Command line: /home/psgendb/BIRCHDEV/bin-linux-x86_64/spades.py	-1	/local/genbank/workspace/reads.all/AB2kb_R1.illumina-1.8+_valid_1P.fq.corrected.fq	-2	/local/genbank/workspace/reads.all/AB2kb_R2.illumina-1.8+_valid_2P.fq.corrected.fq	-1	/local/genbank/workspace/reads.all/AB4kb_R1.illumina-1.8+_valid_1P.fq.corrected.fq	-2	/local/genbank/workspace/reads.all/AB4kb_R2.illumina-1.8+_valid_2P.fq.corrected.fq	-1	/local/genbank/workspace/reads.all/20090202_7_1_1P.fastq.corrected.fq	-2	/local/genbank/workspace/reads.all/20090202_7_2_2P.fastq.corrected.fq	-1	/local/genbank/workspace/reads.all/20090202_8_1_valid_1P.fq.corrected.fq	-2	/local/genbank/workspace/reads.all/20090202_8_2_valid_2P.fq.corrected.fq	-1	/local/genbank/workspace/reads.all/Algae6.2GB_6_1_1P.fastq.corrected.fq	-2	/local/genbank/workspace/reads.all/Algae6.2GB_6_2_2P.fastq.corrected.fq	-1	/local/genbank/workspace/reads.all/Algae6.2GB_7_1_1P.fastq.corrected.fq	-2	/local/genbank/workspace/reads.all/Algae6.2GB_7_2_2P.fastq.corrected.fq	-1	/local/genbank/workspace/reads.all/Algae6.2GB_8_1_1P.fastq.corrected.fq	-2	/local/genbank/workspace/reads.all/Algae6.2GB_8_2_2P.fastq.corrected.fq	-1	/local/genbank/workspace/reads.all/Algae7.2GB_6_1_1P.fastq.corrected.fq	-2	/local/genbank/workspace/reads.all/Algae7.2GB_6_2_2P.fastq.corrected.fq	-1	/local/genbank/workspace/reads.all/Algae7.2GB_7_1_1P.fastq.corrected.fq	-2	/local/genbank/workspace/reads.all/Algae7.2GB_7_2_2P.fastq.corrected.fq	-1	/local/genbank/workspace/reads.all/Algae7.2GB_8_1_1P.fastq.corrected.fq	-2	/local/genbank/workspace/reads.all/Algae7.2GB_8_2_2P.fastq.corrected.fq	-s	/local/genbank/workspace/reads.all/454.corrected.fq	-s	/local/genbank/workspace/reads.all/2008SE.fq	-s	/local/genbank/workspace/reads.all/20090202.pollux.unpaired.fq	-s	/local/genbank/workspace/reads.all/367GB.fq	-s	/local/genbank/workspace/reads.all/AB4kbUnpaired.fq	--only-assembler	-k	21,33,41	-m	63	-t	32	-o	/local/genbank/workspace/reads.all/spades1	

System information:
  SPAdes version: 3.13.0
  Python version: 2.7.5
  OS: Linux-3.10.0-1160.25.1.el7.x86_64-x86_64-with-redhat-7.9-Maipo

Output dir: /local/genbank/workspace/reads.all/spades1
Mode: ONLY assembling (without read error correction)
Debug mode is turned OFF

Dataset parameters:
  Multi-cell mode (you should set '--sc' flag if input data was obtained with MDA (single-cell) technology or --meta flag if processing metagenomic dataset)
  Reads:
    Library number: 1, library type: paired-end
      orientation: fr
      left reads: ['/local/genbank/workspace/reads.all/AB2kb_R1.illumina-1.8+_valid_1P.fq.corrected.fq', '/local/genbank/workspace/reads.all/AB4kb_R1.illumina-1.8+_valid_1P.fq.corrected.fq', '/local/genbank/workspace/reads.all/20090202_7_1_1P.fastq.corrected.fq', '/local/genbank/workspace/reads.all/20090202_8_1_valid_1P.fq.corrected.fq', '/local/genbank/workspace/reads.all/Algae6.2GB_6_1_1P.fastq.corrected.fq', '/local/genbank/workspace/reads.all/Algae6.2GB_7_1_1P.fastq.corrected.fq', '/local/genbank/workspace/reads.all/Algae6.2GB_8_1_1P.fastq.corrected.fq', '/local/genbank/workspace/reads.all/Algae7.2GB_6_1_1P.fastq.corrected.fq', '/local/genbank/workspace/reads.all/Algae7.2GB_7_1_1P.fastq.corrected.fq', '/local/genbank/workspace/reads.all/Algae7.2GB_8_1_1P.fastq.corrected.fq']
      right reads: ['/local/genbank/workspace/reads.all/AB2kb_R2.illumina-1.8+_valid_2P.fq.corrected.fq', '/local/genbank/workspace/reads.all/AB4kb_R2.illumina-1.8+_valid_2P.fq.corrected.fq', '/local/genbank/workspace/reads.all/20090202_7_2_2P.fastq.corrected.fq', '/local/genbank/workspace/reads.all/20090202_8_2_valid_2P.fq.corrected.fq', '/local/genbank/workspace/reads.all/Algae6.2GB_6_2_2P.fastq.corrected.fq', '/local/genbank/workspace/reads.all/Algae6.2GB_7_2_2P.fastq.corrected.fq', '/local/genbank/workspace/reads.all/Algae6.2GB_8_2_2P.fastq.corrected.fq', '/local/genbank/workspace/reads.all/Algae7.2GB_6_2_2P.fastq.corrected.fq', '/local/genbank/workspace/reads.all/Algae7.2GB_7_2_2P.fastq.corrected.fq', '/local/genbank/workspace/reads.all/Algae7.2GB_8_2_2P.fastq.corrected.fq']
      interlaced reads: not specified
      single reads: ['/local/genbank/workspace/reads.all/454.corrected.fq', '/local/genbank/workspace/reads.all/2008SE.fq', '/local/genbank/workspace/reads.all/20090202.pollux.unpaired.fq', '/local/genbank/workspace/reads.all/367GB.fq', '/local/genbank/workspace/reads.all/AB4kbUnpaired.fq']
      merged reads: not specified
Assembly parameters:
  k: [21, 33, 41]
  Repeat resolution is enabled
  Mismatch careful mode is turned OFF
  MismatchCorrector will be SKIPPED
  Coverage cutoff is turned OFF
Other parameters:
  Dir for temp files: /local/genbank/workspace/reads.all/spades1/tmp
  Threads: 32
  Memory limit (in Gb): 63