All statistics are based on contigs of size >= 500 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs).

Assembly                    SOAPdenovo2.scafSeq  SOAPdenovo2.scafSeq_broken
# contigs (>= 0 bp)         460832               -                         
# contigs (>= 1000 bp)      52963                42521                     
# contigs (>= 5000 bp)      15310                2650                      
# contigs (>= 10000 bp)     4029                 754                       
# contigs (>= 25000 bp)     348                  78                        
# contigs (>= 50000 bp)     65                   11                        
Total length (>= 0 bp)      341557143            -                         
Total length (>= 1000 bp)   238700704            94617133                  
Total length (>= 5000 bp)   142785220            25694191                  
Total length (>= 10000 bp)  65449439             12909605                  
Total length (>= 25000 bp)  13809407             2960585                   
Total length (>= 50000 bp)  4528785              745412                    
# contigs                   81683                122248                    
Largest contig              131125               110960                    
Total length                258047143            149486868                 
GC (%)                      54.98                55.25                     
N50                         5616                 1346                      
N75                         2807                 793                       
L50                         12713                25253                     
L75                         28913                62248                     
# N's per 100 kbp           31576.15             27.95