Start: Sun Jun 13 13:12:37 CDT 2021
/home/psgendb/BIRCHDEV/pkg/quast-4.6.3/quast.py --eukaryote --threads 32 -o /local/genbank/workspace/reads.all3.spades1/K21/quast_results /local/genbank/workspace/reads.all3.spades1/K21/simplified_contigs.fasta

Version: 4.6.3

System information:
  OS: Linux-3.10.0-1160.25.1.el7.x86_64-x86_64-with-redhat-7.9-Maipo (linux_64)
  Python version: 2.7.5
  CPUs number: 64

Started: 2021-06-13 13:12:37

Logging to /local/genbank/workspace/reads.all3.spades1/K21/quast_results/quast.log

CWD: /local/genbank/workspace/reads.all3.spades1/K21
Main parameters: 
  Threads: 32, eukaryotic: true, minimum contig length: 500, ambiguity: one, threshold for extensive misassembly size: 1000

Contigs:
  Pre-processing...
  /local/genbank/workspace/reads.all3.spades1/K21/simplified_contigs.fasta ==> simplified_contigs

2021-06-13 13:13:48
Running Basic statistics processor...
  Contig files: 
    simplified_contigs
  Calculating N50 and L50...
    simplified_contigs, N50 = 1092, L50 = 40769, Total length = 143934436, GC % = 53.11, # N's per 100 kbp =  0.00
  Drawing Nx plot...
    saved to /local/genbank/workspace/reads.all3.spades1/K21/quast_results/basic_stats/Nx_plot.pdf
  Drawing cumulative plot...
    saved to /local/genbank/workspace/reads.all3.spades1/K21/quast_results/basic_stats/cumulative_plot.pdf
  Drawing GC content plot...
    saved to /local/genbank/workspace/reads.all3.spades1/K21/quast_results/basic_stats/GC_content_plot.pdf
  Drawing simplified_contigs GC content plot...
    saved to /local/genbank/workspace/reads.all3.spades1/K21/quast_results/basic_stats/simplified_contigs_GC_content_plot.pdf
  Drawing Coverage histogram (bin size: 1x)...
    saved to /local/genbank/workspace/reads.all3.spades1/K21/quast_results/basic_stats/coverage_histogram.pdf
  Drawing simplified_contigs coverage histogram (bin size: 1x)...
    saved to /local/genbank/workspace/reads.all3.spades1/K21/quast_results/basic_stats/simplified_contigs_coverage_histogram.pdf
Done.

NOTICE: Genes are not predicted by default. Use --gene-finding option to enable it.

2021-06-13 13:14:29
Creating large visual summaries...
This may take a while: press Ctrl-C to skip this step..
  1 of 2: Creating Icarus viewers...
  2 of 2: Creating PDF with all tables and plots...
Done

2021-06-13 13:14:46
RESULTS:
  Text versions of total report are saved to /local/genbank/workspace/reads.all3.spades1/K21/quast_results/report.txt, report.tsv, and report.tex
  Text versions of transposed total report are saved to /local/genbank/workspace/reads.all3.spades1/K21/quast_results/transposed_report.txt, transposed_report.tsv, and transposed_report.tex
  HTML version (interactive tables and plots) saved to /local/genbank/workspace/reads.all3.spades1/K21/quast_results/report.html
  PDF version (tables and plots) is saved to /local/genbank/workspace/reads.all3.spades1/K21/quast_results/report.pdf
  Icarus (contig browser) is saved to /local/genbank/workspace/reads.all3.spades1/K21/quast_results/icarus.html
  Log saved to /local/genbank/workspace/reads.all3.spades1/K21/quast_results/quast.log

Finished: 2021-06-13 13:14:47
Elapsed time: 0:02:09.652175
NOTICEs: 1; WARNINGs: 0; non-fatal ERRORs: 0

Thank you for using QUAST!
Finish: Sun Jun 13 13:14:47 CDT 2021