Command line: /home/psgendb/BIRCHDEV/bin-linux-x86_64/spades.py	-1	/local/genbank/workspace/reads.uncorr/20090202_7_R1.fq	-2	/local/genbank/workspace/reads.uncorr/20090202_7_R2.fq	-1	/local/genbank/workspace/reads.uncorr/20090202_8_R1.fq	-2	/local/genbank/workspace/reads.uncorr/20090202_8_R2.fq	-1	/local/genbank/workspace/reads.uncorr/AB2kb_R1.fq	-2	/local/genbank/workspace/reads.uncorr/AB2kb_R2.fq	-1	/local/genbank/workspace/reads.uncorr/AB4kb_R1.fq	-2	/local/genbank/workspace/reads.uncorr/AB4kb_R2.fq	-1	/local/genbank/workspace/reads.uncorr/Algae6.2GB_6_R1.fq	-2	/local/genbank/workspace/reads.uncorr/Algae6.2GB_6_R2.fq	-1	/local/genbank/workspace/reads.uncorr/Algae6.2GB_7_R1.fq	-2	/local/genbank/workspace/reads.uncorr/Algae6.2GB_7_R2.fq	-1	/local/genbank/workspace/reads.uncorr/Algae6.2GB_8_R1.fq	-2	/local/genbank/workspace/reads.uncorr/Algae6.2GB_8_R2.fq	-1	/local/genbank/workspace/reads.uncorr/Algae7.2GB_6_R1.fq	-2	/local/genbank/workspace/reads.uncorr/Algae7.2GB_6_R2.fq	-1	/local/genbank/workspace/reads.uncorr/Algae7.2GB_7_R1.fq	-2	/local/genbank/workspace/reads.uncorr/Algae7.2GB_7_R2.fq	-1	/local/genbank/workspace/reads.uncorr/Algae7.2GB_8_R1.fq	-2	/local/genbank/workspace/reads.uncorr/Algae7.2GB_8_R2.fq	-s	/local/genbank/workspace/reads.uncorr/2008-09allU.fq	-s	/local/genbank/workspace/reads.uncorr/3-6.2-7.2allU.fq	-s	/local/genbank/workspace/reads.uncorr/AGRFallU.fq	-s	/local/genbank/workspace/reads.uncorr/454all.fq	-m	204	-t	32	-o	/local/genbank/workspace/reads.uncorr.spades1	

System information:
  SPAdes version: 3.13.0
  Python version: 2.7.5
  OS: Linux-3.10.0-1160.25.1.el7.x86_64-x86_64-with-redhat-7.9-Maipo

Output dir: /local/genbank/workspace/reads.uncorr.spades1
Mode: read error correction and assembling
Debug mode is turned OFF

Dataset parameters:
  Multi-cell mode (you should set '--sc' flag if input data was obtained with MDA (single-cell) technology or --meta flag if processing metagenomic dataset)
  Reads:
    Library number: 1, library type: paired-end
      orientation: fr
      left reads: ['/local/genbank/workspace/reads.uncorr/20090202_7_R1.fq', '/local/genbank/workspace/reads.uncorr/20090202_8_R1.fq', '/local/genbank/workspace/reads.uncorr/AB2kb_R1.fq', '/local/genbank/workspace/reads.uncorr/AB4kb_R1.fq', '/local/genbank/workspace/reads.uncorr/Algae6.2GB_6_R1.fq', '/local/genbank/workspace/reads.uncorr/Algae6.2GB_7_R1.fq', '/local/genbank/workspace/reads.uncorr/Algae6.2GB_8_R1.fq', '/local/genbank/workspace/reads.uncorr/Algae7.2GB_6_R1.fq', '/local/genbank/workspace/reads.uncorr/Algae7.2GB_7_R1.fq', '/local/genbank/workspace/reads.uncorr/Algae7.2GB_8_R1.fq']
      right reads: ['/local/genbank/workspace/reads.uncorr/20090202_7_R2.fq', '/local/genbank/workspace/reads.uncorr/20090202_8_R2.fq', '/local/genbank/workspace/reads.uncorr/AB2kb_R2.fq', '/local/genbank/workspace/reads.uncorr/AB4kb_R2.fq', '/local/genbank/workspace/reads.uncorr/Algae6.2GB_6_R2.fq', '/local/genbank/workspace/reads.uncorr/Algae6.2GB_7_R2.fq', '/local/genbank/workspace/reads.uncorr/Algae6.2GB_8_R2.fq', '/local/genbank/workspace/reads.uncorr/Algae7.2GB_6_R2.fq', '/local/genbank/workspace/reads.uncorr/Algae7.2GB_7_R2.fq', '/local/genbank/workspace/reads.uncorr/Algae7.2GB_8_R2.fq']
      interlaced reads: not specified
      single reads: ['/local/genbank/workspace/reads.uncorr/2008-09allU.fq', '/local/genbank/workspace/reads.uncorr/3-6.2-7.2allU.fq', '/local/genbank/workspace/reads.uncorr/AGRFallU.fq', '/local/genbank/workspace/reads.uncorr/454all.fq']
      merged reads: not specified
Read error correction parameters:
  Iterations: 1
  PHRED offset will be auto-detected
  Corrected reads will be compressed
Assembly parameters:
  k: automatic selection based on read length
  Repeat resolution is enabled
  Mismatch careful mode is turned OFF
  MismatchCorrector will be SKIPPED
  Coverage cutoff is turned OFF
Other parameters:
  Dir for temp files: /local/genbank/workspace/reads.uncorr.spades1/tmp
  Threads: 32
  Memory limit (in Gb): 204