name        "SeqKit - Remove ALL gaps from alignment"
icon    "$BIRCH/public_html/images/birch_black_ico.png"
tip    "remove ALL gaps from a protein sequence alignment. This is the inverse of a multiple alignment."
#exec        "(tr ""~"" ""-"" <%in1% | readseq -a -degap=- -p -f=PEARSON | sed ""s/\*//"" > %in1%.fsa; $RM_CMD %in1%; blprotein %in1%.fsa;$RM_CMD -f %in1%.fsa)&"
exec        "seqkit seq --remove-gaps %in1% | sed ""s/\*//"" > %in1%.fsa; $RM_CMD %in1%; blprotein %in1%.fsa;$RM_CMD -f %in1%.fsa"
var "in1"
    type        tempfile
    direction   in
    format      fasta
    save        true