name        "extract"
icon    "$BIRCH/public_html/images/birch_black_ico.png"
tip    "open a new BioLegato window with the selected sequences"

var "in1"
    type        tempfile
    direction   in
    format      fasta
    save        true

var "in2"
    type        tempfile
    direction   in
    format      genbank
    save        true
    
#Note: extract uses gde as the output format in all other
# bioLegato instances. We use genbank format here because
# the bioLegato 0.8.0 does not save GenBank annotation in gde format.
# The trade off is that comments are not preserved. See BIRCH
# bugzilla bug #1189 for further discussion.

panel
    var "Run1"
        type        button
        label       "Extract fasta - sequences only"
        shell       "(blprotein %in1%;$RM_CMD -f %in1%)&"
        close       true
    var "Run2"
        type        button
        label       "Extract GenBank entries"
        shell       "(blprotein %in2%;$RM_CMD -f %in2%)&"
        close       true