#NEXUS
[written Sat Jun 07 12:28:17 PDT 2008 by Mesquite  version 2.5 BETA 2 (build j76) at Thrandina.local/192.168.0.136 (Wayne Maddison)]
BEGIN NOTES;

	TEXT  FILE TEXT = 'Example files for coalescence calculations^n^nThe files linked to this one illustrate some of the coalescence calculations that can be done by the package of coalescence modules of the Mesquite system.  To learn more about this package, use the Coalescence Package menu item of the Help menu, or touch on the banner in the Mesquite Startup window. (It should take you to your web browser, perhaps after asking you to locate the browser.)^n^nTo go from one file to another, hit the "Go" button in the green window.';

END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		getWindow;
		tell It;
			setResourcesState false true 80;
			setPopoutState 400;
			setExplanationSize 0;
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			setLocation 4 22;
			setFont SanSerif;
			setFontSize 10;
		endTell;
		newAssistant  #mesquite.basic.ExamplesNavigator.ExamplesNavigator;
		tell It;
			setNextFileName '01-gcContentChart.nex';
			getWindow;
			tell It;
					setExplanationSize 0;
					setAnnotationSize 0;
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					setSize 810 447;
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					setFont SanSerif;
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					setActive;
				setExplanation 'Example files for molecular evolution and phylogeny^n^nThe files linked to this one illustrate some of the calculations for DNA and protein sequence data that can be done by Mesquite.  These examples are incomplete.  More examples can be found in the Simulations folder, in connection with the Simulations & Randomizations section of the manual, and in the Coalescence folder.^n^nTo go to the first example, hit the "Next" button above.';
				setTitle Molecular_Evolution_&_Phylogeny;
				toggleFileNames off;
				setPrevButtonName Previous;
				setNextButtonName Next;
				addWebLink Simulations  'mesquite:docs/Simulating DNA Evolution';
				addFileLink Coalescence  '../Coalescence/00-introduction.nex';
				addFileLink Return_to_main_Introduction  '../Introduction.nex';
			endTell;
			showWindow;
		endTell;
		endTell;
end;