Package: XYLEM

XYLEM - Create and manipulate database subsets
Documentation
Data
Platforms: linux-intel, solaris-sparc, solaris-amd64, linux-x86_64, osx-x86_64
Installation:
Programs:
clu2ig - Translate multiply aligned sequences in clustal format to Intelligenetics format features - extract features from GenBank flatfile entries fetch - retrieve entries from local flatfile database by name or accession number findkey - Keyword search on local flatfile database flat2phyl - Convert a GDE flatfile into a Phylip discrete character file getloc - retrieve entries from a local flatfile database getob - Parse features from GenBank flatfiles phyl2flat - Convert a Phylip discrete character file into a GDE flatfile prot2nuc - Reverse translate protein to degenerate DNA reform - print a multiple alignment using plain text ribosome - Translate nucleic acid to protein splitdb - split a GenBank flatfile into a database containing annotation, sequence and index xylem_identify - used by FINDKEY to extract LOCUS names from database hits xylem_shuffle - randomize sequences using a sliding window