// data dumped from keyset display

Category : "Gene Expression"
Package	 "Trinity"
Package	 "transrate"
Program	 "Trinity"
Program	 "transrate"
Program	 "Rcorrector"

File : "$doc\/rcorrector.man"
Description	 "Manual page"
Pick_me_to_call	 "$ACE_FILE_LAUNCHER" "$doc\/rcorrector.man"

File : "$doc\/pkg\/pigz\/pigz.help"
Description	 "Help"
Pick_me_to_call	 "$ACE_FILE_LAUNCHER" "$doc\/pkg\/pigz\/pigz.help"

File : "$doc\/pkg\/pigz\/pigz.pdf"
Description	 "Manual"
Pick_me_to_call	 "$ACE_FILE_LAUNCHER" "$doc\/pkg\/pigz\/pigz.pdf"

File : "$doc\/pkg\/transrate\/transrate.examples"
Description	 "Command examples"
Pick_me_to_call	 "$ACE_FILE_LAUNCHER" "$doc\/pkg\/transrate\/transrate.examples"

File : "$doc\/pkg\/transrate\/transrate.help"
Description	 "Help"
Pick_me_to_call	 "$ACE_FILE_LAUNCHER" "$doc\/pkg\/transrate\/transrate.help"

File : "$doc\/pkg\/trinity\/Trinity.help"
Description	 "Manual"
Pick_me_to_call	 "$ACE_FILE_LAUNCHER" "$doc\/pkg\/trinity\/Trinity.help"

File : "$doc\/pkg\/trinity\/Trinity_full_info.help"
Description	 "Manual - full options"
Pick_me_to_call	 "$ACE_FILE_LAUNCHER" "$doc\/pkg\/trinity\/Trinity_full_info.help"

File : "http:\/\/github.com\/trinityrnaseq\/trinityrnaseq\/wiki"
Description	 "Web site"
Pick_me_to_call	 "$ACE_FILE_LAUNCHER" "http:\/\/github.com\/trinityrnaseq\/trinityrnaseq\/wiki"

File : "http:\/\/hibberdlab.com\/transrate"
Description	 "Web site"
Pick_me_to_call	 "$ACE_FILE_LAUNCHER" "http:\/\/hibberdlab.com\/transrate\/"

Package : "cutadapt"
Description	 "finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads"
Category	 "Sequence - DNA Sequencing and Assembly"
Documentation	 "https:\/\/cutadapt.readthedocs.io\/en\/stable\/index.html"
Program	 "cutadapt"
local	

Package : "mourisl"
Documentation	 "https:\/\/github.com\/mourisl"
Program	 "Rcorrector"
local	

Package : "transrate"
Description	 "de-novo transcriptome assembly quality analysis"
Category	 "Gene Expression"
Documentation	 "http:\/\/hibberdlab.com\/transrate"
Program	 "transrate"
local	

Package : "Trinity"
Description	 "RNA-Seq De novo Assembly"
Category	 "Gene Expression"
Documentation	 "http:\/\/github.com\/trinityrnaseq\/trinityrnaseq\/wiki"
Program	 "Trinity"
Platform	 "linux-x86_64"
local	

Program : "cutadapt"
Description	 "finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads"
Category	 "Sequence - DNA Sequencing and Assembly"
command	 "cutadapt options filenames"
Package	 "cutadapt"
Documentation	 "https:\/\/cutadapt.readthedocs.io\/en\/stable\/index.html"
local	

Program : "pigz"
Description	 "A parallel implementation of gzip for modern multi-processor, multi-core machines"
Category	 "Utilities"
command	 "pigz [options] [files ...]"
command	 "unpigz [options] [files...]"
Package	 "pigz"
Documentation	 "$doc\/pkg\/pigz\/pigz.pdf"
Documentation	 "$doc\/pkg\/pigz\/pigz.help"
Platform	 "linux-x86_64"

Program : "Rcorrector"
Description	 "Kmer-based error correction for RNA-seq data"
Description	 "Adjusts threshold for trusted kmers based on kmer frequency"
Category	 "Gene Expression"
command	 "run_rcorrector.pl [options]"
Package	 "mourisl"
Documentation	 "$doc\/rcorrector.man"
local	

Program : "seqkit"
Description	 "FASTA\/Q file manipulation"
Category	 "Sequence - DNA Sequencing and Assembly"
command	 "seqkit [command]"
Package	 "SeqKit"
Documentation	 "http:\/\/bioinf.shenwei.me\/seqkit\/"
Documentation	 "$doc\/seqkit.help"
Platform	 "linux-x86_64"
local	

Program : "transrate"
Description	 "de-novo transcriptome assembly quality analysis"
Category	 "Gene Expression"
command	 "transrate [options]"
Package	 "transrate"
Documentation	 "http:\/\/hibberdlab.com\/transrate"
Documentation	 "$doc\/pkg\/transrate\/transrate.help"
Documentation	 "$doc\/pkg\/transrate\/transrate.examples"
Platform	 "linux-x86_64"
local	

Program : "trim_galore"
Description	 "sequenc quality trimming and adaptor removal"
Category	 "Sequence - DNA Sequencing and Assembly"
command	 "trim_galore [options] <filename(s)>"
Package	 "Babraham Bioinformatics"
Documentation	 "$doc\/pkg\/trim_galore\/Trim_galore_User_Guide_v0.4.1.pdf"
Documentation	 "$doc\/pkg\/trim_galore\/trim_galore.help"
Platform	 "linux-x86_64"
local	

Program : "Trinity"
Description	 "RNA-Seq De novo Assembly"
Category	 "Gene Expression"
command	 "Trinity [options]"
Package	 "Trinity"
Documentation	 "http:\/\/github.com\/trinityrnaseq\/trinityrnaseq\/wiki"
Documentation	 "$doc\/pkg\/trinity\/Trinity.help"
Documentation	 "$doc\/pkg\/trinity\/Trinity_full_info.help"
Platform	 "linux-x86_64"
local