Processed file: nad3.pir
Number of sequences: 17
Alignment assumed to be: Protein
New number of positions: 61 (selected positions are underlined in blue)
10 20 30 40 50 60 =========+=========+=========+=========+=========+=========+ nad3_parde ------MEYLLQEYLPILVFLGMASALAIVLILAAAVIAVRN--PDPEKVSAYECGFNAF nad3_acaca ---------MTLEYIYIFIFFWGAFFISCLLIFLSYFLVYQE--SDIEKNSAYECGFQPF nad3_allma --------------MTYLVYIVFTIVLTVGLILVSYLLSQAQ--PDSEKVSAYECGFSPL nad3_apec -----------IFNFLTLFVSILIFLITTLITFAAHFLPSRN-TD-SEKSSPYECGFDPL nad3_arath ---------MMSEFAPISIYLVISLLVSLILLGVPFPFASNS-STYPEKLSAYECGFDPS nad3_balca -------------MNSFLIYLLIAITLSFILSIVGHRLPTRN-MD-QEKLSPYECGFDPQ nad3_chocr ------MKLIFTEYSAILIFFAISSLLSSVIFLLSYFLIPQK--PDQEKVSAYECGFNPF nad3_drome -------------MFSIIFIALLILLITTIVMFLASILSKKA-LIDREKSSPFECGFDPK nad3_human -------------MN-FALILMINTLLALLLMIITFWLPQLN-GY-MEKSTPYECGFDPM nad3_ktun -------------MFFVLSLVLFTFLLSLVLLSVSLSLTKKK-MMNREKSSPFECGFDPK nad3_lter -------------MILTALSSAIALLVPIIILGAAWVLASRS-TEDREKSSPFECGFDPK nad3_marpo -----------MEFAPIFVYLVISLLLSLILIGVSFLFASSSSLAYPEKLSAYECGFDPF nad3_metse ---------MYTEFYGILVLLIFSVVLSAIISGASYILGDKQ--PDREKVSAYECGFDPF nad3_picca MLNYFVYPYGIENDMGMKFYMMLVPMMSMVLMMINYMMTNKS-DNNMNKTGPYECGFDSF nad3_podan -------------MSSMTLFILFVSIIALLFLFINLIFAPHN--PYQEKYSIFECGFHSF nad3_prowi ----------MYEFLGILIYFFIALALSLLLLGLPFLVSTRK--ADPEKISAYECGFDPF nad3_recam -----MNTMILSEYLSVLIFFIFSFGLSCIILGLSYVLATQN--ADTEKLSPYECGFNPF ############# 70 80 90 100 110 120 =========+=========+=========+=========+=========+=========+ nad3_parde D-DARMKFDVRFYLVSILFIIFDLEVAFLFPWAVSFASLS-DVAFWGLMVFLAVLTVGFA nad3_acaca E-DTRSKFNVRYYLIAILFMIFDLEIMYLFPWSISISTGS-FFGVWAIFLFLIILTVGFI nad3_allma G-DARQKFDVSFYLIAILFIIFDLEVVFILPFASVIHNVS-LLGGWITIIFLVILTIGFI nad3_apec N-SARVPFSFRFFLVAILFLLFDLEIALLFPLPFSVFFH--P--IHTP----LILTVGLI nad3_arath G-DARSRFDIRFYLVSILFLIPDLEVTFFFPWAVPPNKID-LFGFWSMMAFLFILTIGFL nad3_balca A-SARLPFSLRFFLVAILFLLFDLEIALLLPFPAALSARDPQLSFTLAFLILLILTIGLI nad3_chocr D-DARATFDIRFYLVAILFLIFDLEISFLFPWSLVLGEIS-IIGFWSMIVFLVILTIGFI nad3_drome S-SSRLPFSLRFFLITIIFLIFDVEIALILPMIIIMKYSNIMIWTITSIIFILILLIGLY nad3_human S-PARVPFSMKFFLVAITFLLFDLEIALLLPLPWALQTTNLPLMVMSSLLLIIILALSLA nad3_ktun S-SARLPFSMRFFLITVVFLVFDVEIVLLLPYLFSSGWSIDVFSLVGSMMILVILIIGVL nad3_lter S-TARIPFSTRFFLLAIIFIVFDIEIVLLMPLPTILHTSDVFTTVTTSVLFLMILLIGLI nad3_marpo D-DARSRFDIRFYLVSILFIIFDLEVTFLFPWAVSLNKIG-LFGFWSMMVFLFILTIGFV nad3_metse G-TPGRPFSIRFFLIGILFLIFDLEISFLFPWCVVCNQVF-PFGYWTMIVFLAVLTLGLV nad3_picca R-QSRTTYSIKFILIAILFLPFDLELTSILPYTLSMYNTN-IYGLFILLYFLLPLIIGFI nad3_podan LGQNRTQFGVKFFIFALVYLLLDLEILLTFPFAVSEYVNN-IYGLIILLGFITIITIGFV nad3_prowi D-DARGRFDIQFYLVAILFIIFDLEVAFLFPWALTLNKIG-YFGFWSMMLFLFILTVGFI nad3_recam D-DARGAFDVRFYLVAILFIIFDLEVAFLFPWAVALSDVT-IFGFWTMFIFLLILTVGFI ############################### ######### 130 140 150 =========+=========+=========+=== nad3_parde YEWKKGALEWA---------------------- nad3_acaca YEWQKGALEWD---------------------- nad3_allma YEFVSGAITDSF--------------------- nad3_apec FEWVQGGLDWAE--------------------- nad3_arath YEWKRGASDRE---------------------- nad3_balca YEWMEGGLEWAE--------------------- nad3_chocr YEWYKGALEWE---------------------- nad3_drome HEWNQGMLNWSN--------------------- nad3_human YEWLQKGLDWTE--------------------- nad3_ktun HEWSEGSLEWFSSSN------------------ nad3_lter HEWKEGSLDWSS--------------------- nad3_marpo YEWKKGALDWE---------------------- nad3_metse YEWLKGGLEWE---------------------- nad3_picca IEINTKAIYMTKMFNRNVKSMTSYVKYNNKI-- nad3_podan YELGKSALKIDSRQVITMTRFNYSSTIEYLGKI nad3_prowi YEWRKGALDWS---------------------- nad3_recam YEWKKGALDWE---------------------- ########
Parameters used Minimum Number Of Sequences For A Conserved Position: 9 Minimum Number Of Sequences For A Flanking Position: 14 Maximum Number Of Contiguous Nonconserved Positions: 8 Minimum Length Of A Block: 6 Allowed Gap Positions: All Use Similarity Matrices: Yes
Flank positions of the 2 selected block(s) Flanks: [48 91] [112 128] New number of positions in nad3.pir-gb: 61 (39% of the original 153 positions)