Table 1. Codes for --dblist
|
Code
|
Description
|
nt |
Non-redundant nucleotide |
refseqgene |
RefSeq Gene |
refseq_rna |
RefSeq RNA |
human_genomic |
Human Genomic - RefSeq Human
chromosomal |
refseq_genomic |
RefSeq Genomic |
human_genomic_transcript |
Human Genomic plus
Transcripts |
mouse_genomic_transcript |
Mouse Genomic plus
Transcripts |
Representative_Genomes |
Representative Genomes |
other_genomic |
Other Genomic - RefSeq
non-human chromosomal seqs |
vector |
Vector |
patnt |
Patented Nucleotide |
pdbnt |
Nucleotide sequences from PDB
3D nucl. acid structures |
16SMicrobial |
16S Microbial |
nr |
Non-redundant protein |
refseq_protein |
RefSeq Protein |
swissprot |
Uniprot |
pataa |
Patented Protein |
pdbaa |
Protein sequences from PDB 3D
protein structures |
cdd_delta |
Conserved Domain Database for
DeltaBlast |
env_nt |
Environmental - Nucleotide |
env_nr |
Environmental - Protein |
est |
Expressed Sequence Tags |
est_human |
Expressed Sequence Tags -
Human |
est_mouse |
Expressed Sequence Tags -
Mouse |
est_others |
Expressed Sequence Tags -
Other |
sts |
Sequence-Tagged Sites |
gss |
Genome Survey Sequences |
gss_annot |
Genome Survey Sequences -
Annotation |
htgs |
High Throughput Genomic
Sequencing |
tsa_nt |
Transcriptome Shotgun
Assembly nucleotide |
wgs |
Whole Genome Sequencing |
taxdb |
Taxonomy |