Show Helix This function will highlight all deviances of a sequence from a proposed secondary structure. The secondary structure must be a text sequence containing only ['s, ]'s, and -'s. Any column that represents a 5' side of a helix should have a '[' character, all 3' helix positions should have a ']' and all others should have a '-' character. Example: helix: ---[[[---]]]--- seq: aaagggaaacccaaa To represent: aaa g - c g - c g - c aaa aaa Care must be taken to insure that there are an equal number of ['s and ]'s. Select the sequences that you wish to test, along with the Helix sequence before calling this function. The results are returned as a set of color masks that highlight U-G pairing in light blue, A-U, G-C pairing in dark blue, and all others in gold. Pairing with a gap character is shown in red. Use the File:Properties... menu to disable the color mask, and return the standard character->color display.