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Manpage of PS_LAV
PS_LAV
Section: User Commands (1)
Updated: local
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NAME
ps_lav [-B] [-Z db_size] - plot an "lav" file in postscript.
DESCRIPTION
ps_lav is a simple program to take "lav" format output from "lalign35"
and produce postscript alignment plots (which look like "dot-plots").
It was designed to work with the output of the lalign35 program,
but should work with other lav output as well.
- -B
-
color alignment lines using the "bit" score.
- -Z db_size
-
set the effective database size for an E()-value calculate to db_size,
and color alignment lines using E()-values. Requires bit scores in
the lav ouput.
AUTHOR
Bill Pearson
wrp@virginia.EDU
Index
- NAME
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- DESCRIPTION
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- AUTHOR
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