Program align bachrest blastcl3 CAP2 clique consense contml contrast d3hom d4hom dbstat dialign-tx dnacomp dnadist dnainvar dnaml dnamlk dnamove dnapars dnapenny dollop dolmove dolpenny drawgram drawtree factor fitch flat2phyl funnel garnier gel gendist getloc getob grease intrest kitsch mix move mrtrans multidigest neighbor numseq p1hom p2hom pars penny phyl2flat primer3 primer3_core prostat prot2nuc protdist protpars reform restdist restml ribosome seqboot shuffle splitdb tace tacg testcode treedist weighbor xace xylem_identify