acedemo align ArrayNorm artemis atv bachrest bestscor biolegato birchconfig birchdb birchhome.sh birchstats blastcl3 BLExtractSubset.py blrevcomp bluejay boxshade browser.csh btail.csh CAP2 clique CloneIt clu2ig clustalw clustalx Cn3D consense consensus contml contrast csv2phyl.sh customdoc.py d3hom d4hom dat2ace.sh dbstat dGDE dialign-tx dnacomp dnadist dnainvar dnaml dnamlk dnamove dnapars dnapenny doc2ace.sh dollop dolmove dolpenny drawgram drawtree ExpressConverter factor fasta fastDNAml fastf fastm fasts fastx fasty features fetch fil.py findkey fitch flat2phyl fromgb funnel garnier gbupdate gcua gde gel gendist generic_ncbi_data_fetcher.pl genographer getloc getob ggsearch glsearch gmat-inf-gc gp grease htmldoc.py intrest Jalview kitsch lalign lbirchdb lgbirchdb MakeCons makemenus.py Mapmaker MapmakerQTL mbiolegato mesquite mGDE midas mix move mrbayes mrtrans multidigest MWCalculator neighbor numseq osp ospX p1hom p2hom pars patser penny phyl2flat pirupdate primer3 primer3_core prostat prot2nuc protdist protpars randseq readseq reform relate restdist restml reticulate ribosome ruler seqboot sequin shuffle splitdb ssearch tace tacg tbiolegato tcoffee testcode tfastf tfasts tfastx tfasty tGDE tmev TraceView treedist treetool UNINSTALL-birch.sh wconsensus weighbor xace xylem_identify