BLASTP 2.0.10 [Aug-26-1999] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|132349|sp|P15394|REPA_AGRTU REPLICATING PROTEIN (250 letters) Database: data/swissprot 82,258 sequences; 29,652,561 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|132349|sp|P15394|REPA_AGRTU REPLICATING PROTEIN 514 e-146 gi|123932|sp|P19922|HYIN_BRAJA INDOLEACETAMIDE HYDROLASE (IAH) ... 34 0.29 gi|137670|sp|P06422|VE2_HPV08 REGULATORY PROTEIN E2 32 0.86 gi|5921693|sp|Q05152|CCAB_RABIT VOLTAGE-DEPENDENT N-TYPE CALCIU... 32 1.5 gi|121952|sp|P02256|H1_PARAN HISTONE H1, GONADAL 31 2.5 gi|124141|sp|P08392|ICP4_HSV11 TRANS-ACTING TRANSCRIPTIONAL PRO... 31 3.3 gi|3915729|sp|P51592|HYDP_DROME HYPERPLASTIC DISCS PROTEIN (HYD... 31 3.3 gi|462182|sp|P33438|GLT_DROME GLUTACTIN PRECURSOR 31 3.3 gi|731294|sp|P39713|YAG1_YEAST HYPOTHETICAL ZINC-TYPE ALCOHOL D... 30 4.3 gi|1708851|sp|P55268|LMB2_HUMAN LAMININ BETA-2 CHAIN PRECURSOR ... 30 4.3 gi|2495137|sp|Q24704|H1_DROVI HISTONE H1 29 7.5 gi|1172635|sp|P46466|PRS4_ORYSA 26S PROTEASE REGULATORY SUBUNIT... 29 9.8 gi|6093970|sp|Q61085|RHOP_MOUSE GTP-RHO BINDING PROTEIN 1 (RHOP... 29 9.8 gi|547963|sp|Q01989|MYS9_DROME MYOSIN HEAVY CHAIN 95F (95F MHC) 29 9.8 gi|6226905|sp|Q59567|TOP1_MYCTU DNA TOPOISOMERASE I (OMEGA-PROT... 29 9.8 QUERY 1 MFQQIGAVQAKSGTDEPAHPCEKFPPERKCEAVFWKPLPRHEAREILLAARKYELAMKQP 60 0 1 MFQQIGAVQAKSGTDEPAHPCEKFPPERKCEAVFWKPLPRHEAREILLAARKYELAMKQP 60 6011 ------------------------------------------------------------ 42735 ------------------------------------------------------------ 14903 ------------------------------------------------------------ 36499 ------------------------------------------------------------ 36850 ------------------------------------------------------------ 76818 ------------------------------------------------------------ 14245 ------------------------------------------------------------ 47667 228 -----------------------------------------------------ELAEKMG 234 57583 ------------------------------------------------------------ 59981 ------------------------------------------------------------ 23110 ------------------------------------------------------------ 58685 ------------------------------------------------------------ 14284 ------------------------------------------------------------ 72095 ------------------------------------------------------------ QUERY 61 GKRTGPLGHVALEVLDYLTNLVDFGNGRLDPSISTIMEKIGRAESCMSALYPNRQRGRRP 120 0 61 GKRTGPLGHVALEVLDYLTNLVDFGNGRLDPSISTIMEKIGRAESCMSALYPNRQRGRRP 120 6011 ------------------------------------------------------------ 42735 ------------------------------------------------------------ 14903 822 ---------------------------------------------------PGRDAPRGP 830 36499 ------------------------------------------------------------ 36850 59 -----------------------------------------------------RRDGRAP 65 76818 ------------------------------------------------------------ 14245 644 -------------------------------------EYVRAQEARQQEFIREREQRRRE 666 47667 235 ARVYDPTAHAAKESIDYLRSIADGGDG--------------------------------- 261 57583 1671 --------------------------------------KLKRAGNSLAASTAEETAGSAQ 1692 59981 ------------------------------------------------------------ 23110 19 ---------------------------------------------------------RKP 21 58685 ------------------------------------------------------------ 14284 ------------------------------------------------------------ 72095 842 -----------------------------------------------------KRRGRQS 848 QUERY 121 AGAADKQRLPLEPAGARPRALLGKYVRK------AA---PL---PDDAAQAR-------- 160 0 121 AGAADKQRLPLEPAGARPRALLGKYVRK------AA---PL---PDDAAQAR-------- 160 6011 ------------------------------------------------------------ 42735 258 --------------------------------------------PQKEQRRS-------- 265 14903 831 PGGKSRPDGSEAPEGADPPRRHHRHRDK------DK---AP---ATVPSAGE-------- 870 36499 147 AAAKRKAALAKKKAAAAKRKAAAKAKKA------KK---PK---KKAAKKAK-------- 186 36850 66 AAGTDAGEDAGDAVSPRQLALLASMVEE------AVRTIPT---PDPAASPP-------- 108 76818 ------------------------------------------------------------ 14245 667 QQLRDQQRYPQQ----EPREQQDERIRQ------QR---EQ---EERLRQQR-------- 702 47667 260 ------------------------------------------------------------ 261 57583 1693 GRAQEAEQLLRGPLGDQYQTVKALAERK------AQ---GVLAAQARAEQLR-------- 1735 59981 124 ---------------AKPKA--SAVEKK------TK---KV---NASAARAT-------- 146 23110 22 GGDGDKKDRKFEPSAAPSR--VGRKQRKQKGPEAAA---RL---PNVAPLSKCRLRLLKL 73 58685 ------------------------------------------------------------ 14284 936 ---------------------------R------AA---KE---AEEQRQRE-------- 948 72095 849 ASAPPLRELGTDPASGKPMVI--KDGRF------GP---YV---TDGETNAS-------- 886 QUERY 161 Q----ERHDTIKAHMDS---LSPADRLR----ET--VEDRTRAEQLAG-YVE-RAAQNR- 204 0 161 Q----ERHDTIKAHMDS---LSPADRLR----ET--VEDRTRAEQLAG-YVE-RAAQNR- 204 6011 12 -----QRRDLRGRDRRS---ASRTDARR----QS--AAERGCRRSQRG-SAE-GCACGR- 54 42735 266 R----SRHRT-RSRSRS---LSRVRAVG----ST--TVSRSRSSSLTK-AVR-PRSRSR- 308 14903 871 Q----DRAEALRAEGGE---LGPREERG----RP----RRSRSKEAPG-APEVRSDRGRG 914 36499 187 K----PAKKSPKKAKKP---AKKSPKKK----KA--KRSPKKAKKAAG-KRK-PAAKKA- 230 36850 109 RTPAFRADDDDGDEYDD---AADAAGDR----AP--ARGREREAPLRGAYPD-PTDRLS- 157 76818 1967 -----DKQDSISGRINN---LSPMTESY----DT--DDELANLEEFNA-DVQ-MSASSM- 2009 14245 703 E----QE-----------------ERLR----QQRELEERIRQQQERE-QYE-REQQER- 734 47667 260 ------------------------------------------------------------ 261 57583 1736 D----EARDLLQAAQDK---LQRLQELE----GT--YEENERA----------------- 1765 59981 147 K----SKSSTSTTKKAA---GAADKKLS----KS--AAAKKNVEKKKA-DKE-KAKDAK- 190 23110 74 E----RVKDYLLMEEEF---VAAQERLRPTEDKT--EEDRSKVDDLRG------------ 112 58685 584 ----------------------------------------------------------R- 584 14284 949 E----IENKRLKAEMETRRKAAEAQRLR----QE--EEDRRAALALQE-QLE-KEAKDD- 995 72095 887 L----RKGDDVASITD--------ERAA----EL--LADRRARGPAKR-PAR-KAARKV- 925 QUERY 205 --PSGPRKAARRRQQSRCSFTTPNRPRRTLPS------SHPQKFG---GTKGRKAFE 250 0 205 --PSGPRKAARRRQQSRCSFTTPNRPRRTLPS------SHPQKFG---GTKGRKAFE 250 6011 55 --QTGPRAA-----RSACCTACPSRSRRMSTT------EGRPNFN---GVPANKDF- 94 42735 309 --SRGRATATSRRRAGRGS---PRRRRSTSRSPSTNTFKRSQRGG---GRRGR---- 353 14903 915 PCPEGGRRHHRRGSPEEAAEREPRRHRAHRHG------PDPGKEGPASGTRGER--- 962 36499 231 --RRSPRKAGKRRSPKK---------------------------------------- 245 36850 158 --PRPPAQPPRRRRHGR---------------------------------------- 172 76818 2010 --PSGSQGTRRH------AFFARSESTLTLGC------SAPEGF------------- 2039 14245 735 --EQREREELERQQRER---------------------------------------- 749 47667 260 --------------------------------------------------------- 261 57583 1764 --------------------------------------------------------- 1765 59981 191 --KTGTIKAKPTTAKAKSSATKPKTPKPKTTS------AKPKK-------------- 225 23110 111 --------------------------------------------------------- 112 58685 585 --GTGPRRAALLWNQRECGFETP-MPTRTRP-------------------------- 612 14284 996 --AKYRQQLEQERRDHELALRLANESNGQVED------SPP---------------- 1028 72095 926 --PA--KKAAKR--------------------------------------------- 933 Database: data/swissprot Posted date: Nov 15, 1999 2:55 PM Number of letters in database: 29,652,561 Number of sequences in database: 82,258 Lambda K H 0.317 0.133 0.395 Lambda K H 0.270 0.0470 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14679054 Number of Sequences: 82258 Number of extensions: 599117 Number of successful extensions: 1508 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 1504 Number of HSP's gapped (non-prelim): 15 length of query: 250 length of database: 29,652,561 effective HSP length: 51 effective length of query: 199 effective length of database: 25,457,403 effective search space: 5066023197 effective search space used: 5066023197 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.7 bits) S2: 63 (29.0 bits)