BLASTP 2.0.12 [Apr-21-2000] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= aaaa (889 letters) Database: /dbase/swissprot/main/release/sp; /dbase/swissprot/main/update/spu 88,201 sequences; 31,957,340 total letters Searching.................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value 100K_RAT Q62671 rattus norvegicus (rat). 100 kda protein (ec... 1516 0.0 HYDP_DROME P51592 drosophila melanogaster (fruit fly). hyper... 513 e-145 PUB1_SCHPO Q92462 schizosaccharomyces pombe (fission yeast).... 95 7e-19 RSP5_YEAST P39940 saccharomyces cerevisiae (baker's yeast). ... 93 3e-18 NED4_HUMAN P46934 homo sapiens (human). nedd-4 protein (ec 6... 88 9e-17 NED4_MOUSE P46935 mus musculus (mouse). nedd-4 protein (ec 6... 87 1e-16 URB1_RAT P51593 rattus norvegicus (rat). dna binding protein... 85 4e-16 UE3A_HUMAN Q05086 homo sapiens (human). ubiquitin-protein li... 84 1e-15 HUL5_YEAST P53119 saccharomyces cerevisiae (baker's yeast). ... 83 2e-15 UE3A_MOUSE O08759 mus musculus (mouse). ubiquitin-protein li... 82 6e-15 HUL4_YEAST P40985 saccharomyces cerevisiae (baker's yeast). ... 69 3e-11 UFD4_YEAST P33202 saccharomyces cerevisiae (baker's yeast). ... 58 7e-08 Y032_HUMAN Q15034 homo sapiens (human). hypothetical protein... 56 3e-07 TR12_HUMAN Q14669 homo sapiens (human). thyroid receptor int... 50 2e-05 PAB1_MOUSE P29341 mus musculus (mouse). polyadenylate-bindin... 49 3e-05 PAB1_HUMAN P11940 homo sapiens (human). polyadenylate-bindin... 49 5e-05 PABP_XENLA P20965 xenopus laevis (african clawed frog). poly... 48 8e-05 PABP_DROME P21187 drosophila melanogaster (fruit fly). polya... 41 0.008 PAB5_ARATH Q05196 arabidopsis thaliana (mouse-ear cress). po... 37 0.15 PAB2_ARATH P42731 arabidopsis thaliana (mouse-ear cress). po... 34 0.99 MCM3_MOUSE P25206 mus musculus (mouse). dna replication lice... 34 1.7 PABP_SCHPO P31209 schizosaccharomyces pombe (fission yeast).... 32 3.8 PROB_SERMA P17856 serratia marcescens. glutamate 5-kinase (e... 32 6.6 ST20_CANAL Q92212 candida albicans (yeast). serine/threonine... 31 8.6 KEND_HUMAN O95613 homo sapiens (human). kendrin (kiaa0402). ... 31 8.6 FIXK_RHIME P13295 rhizobium meliloti (sinorhizobium meliloti... 31 8.6 CC24_YEAST P11433 saccharomyces cerevisiae (baker's yeast). ... 31 8.6 >100K_RAT Q62671 rattus norvegicus (rat). 100 kda protein (ec 6.3.2.-). 7/1999 Length = 889 Score = 1516 bits (3882), Expect = 0.0 Identities = 765/889 (86%), Positives = 765/889 (86%) Query: 1 MMSARGDFLNYALSLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNQQTTLDT 60 MMSARGDFLNYALSLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNQQTTLDT Sbjct: 1 MMSARGDFLNYALSLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNQQTTLDT 60 Query: 61 PQXXXXXXXXXXXXGIXXXXXXXXXXXXTSQSATLNDKDDESLPAETGQNHPFFRRSDSM 120 PQ GI TSQSATLNDKDDESLPAETGQNHPFFRRSDSM Sbjct: 61 PQLERKRTRELLELGIDNEDSEHENDDDTSQSATLNDKDDESLPAETGQNHPFFRRSDSM 120 Query: 121 TFLGCIPPNPFEVPLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSAGSGKCLVEVT 180 TFLGCIPPNPFEVPLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSAGSGKCLVEVT Sbjct: 121 TFLGCIPPNPFEVPLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSAGSGKCLVEVT 180 Query: 181 MDRNCLEVLPTKMSYAANLKNVMNMQNRQKKAGEDQSMLAEEADSSKPGPSAHDVAAQLK 240 MDRNCLEVLPTKMSYAANLKNVMNMQNRQKKAGEDQSMLAEEADSSKPGPSAHDVAAQLK Sbjct: 181 MDRNCLEVLPTKMSYAANLKNVMNMQNRQKKAGEDQSMLAEEADSSKPGPSAHDVAAQLK 240 Query: 241 SSLLAEIGLTESEGPPLTSFRPQCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPG 300 SSLLAEIGLTESEGPPLTSFRPQCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPG Sbjct: 241 SSLLAEIGLTESEGPPLTSFRPQCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPG 300 Query: 301 SILTELGGFEVKESKFRREMEKLRNQQSRDLSLEVDRDRDLLIQQTMRQLNNHFGRRCAT 360 SILTELGGFEVKESKFRREMEKLRNQQSRDLSLEVDRDRDLLIQQTMRQLNNHFGRRCAT Sbjct: 301 SILTELGGFEVKESKFRREMEKLRNQQSRDLSLEVDRDRDLLIQQTMRQLNNHFGRRCAT 360 Query: 361 TPMAVHRVKVTFKDEPGEGSGVARSFYTAIAQAFLSNEKLPNLDCIQNANKGTHTSLMQX 420 TPMAVHRVKVTFKDEPGEGSGVARSFYTAIAQAFLSNEKLPNLDCIQNANKGTHTSLMQ Sbjct: 361 TPMAVHRVKVTFKDEPGEGSGVARSFYTAIAQAFLSNEKLPNLDCIQNANKGTHTSLMQR 420 Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLSIDTRPFRPASEGNPSDDPDP 480 QLSIDTRPFRPASEGNPSDDPDP Sbjct: 421 LRNRGERDREREREREMRRSSGLRAGSRRDRDRDFRRQLSIDTRPFRPASEGNPSDDPDP 480 Query: 481 LPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAMELI 540 LPAHRQALGERLYPRVQAMQPAFASKITGM RARVEEAMELI Sbjct: 481 LPAHRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELI 540 Query: 541 VAHGRENGAXXXXXXXXXXXXEKVQENRKRHGSSRSVVXXXXXXXXXXXXNAPLFYQPGK 600 VAHGRENGA EKVQENRKRHGSSRSVV NAPLFYQPGK Sbjct: 541 VAHGRENGADSILDLGLLDSSEKVQENRKRHGSSRSVVDMDLDDTDDGDDNAPLFYQPGK 600 Query: 601 RGFYTPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAF 660 RGFYTPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAF Sbjct: 601 RGFYTPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAF 660 Query: 661 FDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQN 720 FDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQN Sbjct: 661 FDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQN 720 Query: 721 VYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQML 780 VYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQML Sbjct: 721 VYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQML 780 Query: 781 ISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMP 840 ISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMP Sbjct: 781 ISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMP 840 Query: 841 SITIRPPDDQHLPTANTCISRLYVPXXXXXXXXXXXXXXXXXXXNFGFV 889 SITIRPPDDQHLPTANTCISRLYVP NFGFV Sbjct: 841 SITIRPPDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFGFV 889 >HYDP_DROME P51592 drosophila melanogaster (fruit fly). hyperplastic discs protein (hyd protein) (ec 6.3.2.-). 12/1998 Length = 2895 Score = 513 bits (1308), Expect = e-145 Identities = 281/634 (44%), Positives = 375/634 (58%), Gaps = 32/634 (5%) Query: 263 QCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPGSILTELGGFEVKESKFRREMEK 322 Q +F G+ + +L + L+L+LFGR FM+DVG E GS+L EL GF VKE +FRR MEK Sbjct: 2287 QSNFSGIAPCNFLLSAK--LTLDLFGRPFMDDVGMEHGSVLPELRGFPVKEMRFRRHMEK 2344 Query: 323 LRNQQSRDLSL-EVDRDRDLLIQQTMRQLNNHFGR--RCATTPMAVHRVKVTFKDEPGEG 379 LRN Q RDL L +++R+R+ LI QT ++LN FG R P+ +RVKVTFKDEPGEG Sbjct: 2345 LRNGQQRDLVLCKLERNRESLIVQTFKELNTQFGNQSRRIQPPITFNRVKVTFKDEPGEG 2404 Query: 380 SGVARSFYTAIAQAFLSNEKLPNLDCIQNANKGTHTSLMQXXXXXXXXXXXXXXXXXXXX 439 SGVARSFYT+IA+A L++ K+PNL+ +Q H+ + Sbjct: 2405 SGVARSFYTSIAEALLASAKIPNLESVQVGTN--HSKYVVPFSSILRTTVSGSSRDQSTL 2462 Query: 440 XXXXXXXXXXXXXXXXXXQLSIDTRPFRPASEGN---PSDDPDPLPAHRQALGERLYPRV 496 L++D RP+ P + + P D L H Q +GERLYP++ Sbjct: 2463 QRRGSNSKILWRSARERKALNLDARPYTPPNSSDNATPESLNDHLSVHLQQIGERLYPKI 2522 Query: 497 QAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAMELIVAHGRENGAXXXXXXX 556 ++ A KITGM R +V EA+E+I + + Sbjct: 2523 HSINQTHAPKITGMLLEIPTPQLLSVISSDETLRQKVNEAIEIITFKQKSETSA------ 2576 Query: 557 XXXXXEKVQENRKRHGSSRSVVXXXXXXXXXXXXNAPLFYQPGKRGFYTPRPGKNTEARL 616 Q ++ + S VV N PLFY PGKRGFY PR G + R+ Sbjct: 2577 --------QSSQPKKSPSVVVVDPVDDD------NEPLFYSPGKRGFYIPRQGFASFERI 2622 Query: 617 NCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILAS 676 N FRNIGR++GLCLLQNEL P+ L RHV+K +L RK+ +HD AFFDP +YES RQ+I + Sbjct: 2623 NAFRNIGRLIGLCLLQNELLPLFLQRHVLKYILRRKIKFHDLAFFDPALYESFRQIIQNA 2682 Query: 677 QSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQNVYEYVRKYAEHRMLVV 736 Q+ + + + M+L F +DL KEEG G ELIP G ++ V+ + +Y ++ + Sbjct: 2683 QTKEGEETINRMELCFVIDLMKEEGCGNRELIPGGRDV-VSHRVIYSSTSDAIQNIDXIK 2741 Query: 737 A-EQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAE 795 + E+ L A++ G+ DVLP NS+ +LTAED RLL+NG G++NV LIS+T+FNDES E + Sbjct: 2742 SQEKALEALKDGVFDVLPDNSMINLTAEDLRLLLNGVGDINVSTLISYTTFNDESSEGPD 2801 Query: 796 KLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTA 855 KL +FK+WFWSIVE+M++ ERQ LVYFWT SP+LPASEEGFQP+PS+TIRP DD HLPTA Sbjct: 2802 KLXKFKKWFWSIVEKMNIMERQHLVYFWTGSPALPASEEGFQPLPSVTIRPADDSHLPTA 2861 Query: 856 NTCISRLYVPXXXXXXXXXXXXXXXXXXXNFGFV 889 NTCISRLY+P NFGFV Sbjct: 2862 NTCISRLYIPLYSSKSILRSKMLMAIKSKNFGFV 2895 Score = 110 bits (272), Expect = 1e-23 Identities = 69/209 (33%), Positives = 107/209 (51%), Gaps = 26/209 (12%) Query: 3 SARGDFLNYALSLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNQQTTLDTPQ 62 ++R DF Y LSLMRSH EH D LPVLD+ +L+H+AYV A +Y+++ N D Sbjct: 1913 NSRRDFFTYCLSLMRSHTSEHRDALPVLDITALRHIAYVLDAFVYYMR--NDSGFYDKQD 1970 Query: 63 XXXXXXXXXXXXGIXXXXXXXXXXXXTSQSATLNDKDDE------SLPA--ETGQNHPFF 114 I + A L + + + S+P+ + + H FF Sbjct: 1971 SISGR--------INNLSPMTESYDTDDELANLEEFNADVQMSASSMPSGSQGTRRHAFF 2022 Query: 115 RRSDSMTFLGCIPPNPFEVPLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSAGSGK 174 RS+S LGC P FE+PL A+PLAD+PHLLQPN+++++LF + +++ SG Sbjct: 2023 ARSESTLTLGCSAPEGFELPLDMAMPLADKPHLLQPNSKRQELFANLPLLVTTNANNSG- 2081 Query: 175 CLVEVTMD---RNCLEVLPTKMSYAANLK 200 T D + + PT++ ++ +LK Sbjct: 2082 ----ATNDGDGASIFDYTPTRLGFSNSLK 2106 >PUB1_SCHPO Q92462 schizosaccharomyces pombe (fission yeast). ubiquitin--protein ligase pub1 (ec 6.3.2.-). 12/1998 Length = 767 Score = 94.8 bits (232), Expect = 7e-19 Identities = 69/267 (25%), Positives = 116/267 (42%), Gaps = 22/267 (8%) Query: 606 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVM 665 P G N E LN F+ IGR++GL + K++L +KV D D Sbjct: 491 PHSGINPE-HLNYFKFIGRVIGLAIFHRRFVDAFFVVSFYKMILQKKVTLQDMESMDAEY 549 Query: 666 YESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQNVYEYV 725 Y SL ++ + D FS D F + ++L PNG NI VT +N EYV Sbjct: 550 YRSLVWILDNDITGVLDLTFSVEDNCFGEVVT-------IDLKPNGRNIEVTEENKREYV 602 Query: 726 RKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTS 785 R+ E+ +A +G +++P+ + + LL+ G E++++ T Sbjct: 603 DLVTVWRIQKRIEEQFNAFHEGFSELIPQELINVFDERELELLIGGISEIDMEDWKKHTD 662 Query: 786 FNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQ-------P 838 + S + Q +WFW +++ S ++ L+ F T + +P + GF+ P Sbjct: 663 YRSYSEND-----QIIKWFWELMDEWSNEKKSRLLQFTTGTSRIPVN--GFKDLQGSDGP 715 Query: 839 MPSITIRPPDDQHLPTANTCISRLYVP 865 + + LP A+TC +RL +P Sbjct: 716 RKFTIEKAGEPNKLPKAHTCFNRLDLP 742 >RSP5_YEAST P39940 saccharomyces cerevisiae (baker's yeast). ubiquitin--protein ligase rsp5 (ec 6.3.2.-). 7/1999 Length = 809 Score = 92.8 bits (227), Expect = 3e-18 Identities = 71/267 (26%), Positives = 122/267 (45%), Gaps = 22/267 (8%) Query: 606 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVM 665 P G N E LN F+ IGR++GL + + K++L +KV D D + Sbjct: 533 PNSGINPE-HLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEV 591 Query: 666 YESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQNVYEYV 725 Y SL ++ S D FSA D F + V+L P+G NI VT N EYV Sbjct: 592 YNSLNWMLENSIDGVLDLTFSADDERFGEVVT-------VDLKPDGRNIEVTDGNKKEYV 644 Query: 726 RKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTS 785 Y + R++ ++ A G +++P++ + + LL+ G E++++ T Sbjct: 645 ELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHTD 704 Query: 786 FNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMPS---- 841 + + +++++Q WFW V +R L+ F T + +P + GF+ + Sbjct: 705 Y--RGYQESDEVIQ---WFWKCVSEWDNEQRARLLQFTTGTSRIPVN--GFKDLQGSDGP 757 Query: 842 --ITIRPPDD-QHLPTANTCISRLYVP 865 TI + Q LP ++TC +R+ +P Sbjct: 758 RRFTIEKAGEVQQLPKSHTCFNRVDLP 784 >NED4_HUMAN P46934 homo sapiens (human). nedd-4 protein (ec 6.3.2.-) (kiaa0093) (fragment). 7/1999 Length = 927 Score = 87.8 bits (214), Expect = 9e-17 Identities = 72/268 (26%), Positives = 122/268 (44%), Gaps = 23/268 (8%) Query: 606 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVM 665 P G E L+ F+ IGR+ G+ + +L R K++L + + HD D Sbjct: 649 PNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLHKPITLHDMESVDSEY 708 Query: 666 YESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQV---ELIPNGVNIPVTPQNVY 722 Y SLR ++ +D + +DL F +D EE GQ EL G I VT +N Sbjct: 709 YNSLRWIL----ENDP----TELDLRFIID---EELFGQTHQHELKNGGSEIVVTNKNKK 757 Query: 723 EYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLIS 782 EY+ + R + ++ + A ++G +++P++ ++ + LL+ G G+V+V Sbjct: 758 EYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVNDWRE 817 Query: 783 FTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLP----ASEEGFQP 838 T + + N + + +WFW V M +R L+ F T + +P A G Sbjct: 818 HTKYKNGYSANHQVI----QWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAELYGSNG 873 Query: 839 MPSITIRP-PDDQHLPTANTCISRLYVP 865 S T+ + LP A+TC +RL +P Sbjct: 874 PQSFTVEQWGTPEKLPRAHTCFNRLDLP 901 >NED4_MOUSE P46935 mus musculus (mouse). nedd-4 protein (ec 6.3.2.-) (fragment). 11/1997 Length = 957 Score = 87.0 bits (212), Expect = 1e-16 Identities = 73/270 (27%), Positives = 120/270 (44%), Gaps = 27/270 (10%) Query: 606 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVM 665 P G E L+ F+ IGR+ G+ + +L R K++L + + HD D Sbjct: 679 PNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLQKLITLHDMESVDSEY 738 Query: 666 YESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQV---ELIPNGVNIPVTPQNVY 722 Y SLR ++ + +DL F +D EE GQ EL G I VT +N Sbjct: 739 YSSLRWILENDPTE--------LDLRFIID---EELFGQTHQHELKTGGSEIVVTNKNKK 787 Query: 723 EYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLIS 782 EY+ + R + ++ + A ++G +++P++ ++ + LL+ G G+V+V Sbjct: 788 EYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVNDWRE 847 Query: 783 FTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLP----ASEEGFQP 838 T + + N + + WFW V M +R L+ F T + +P A G Sbjct: 848 HTKYKNGYSMNHQVI----HWFWKAVWMMDSEKRIRLLQFVTGTSRVPMNGFAELYGSNG 903 Query: 839 MPSITIR---PPDDQHLPTANTCISRLYVP 865 S T+ PD LP A+TC +RL +P Sbjct: 904 PQSFTVEQWGTPD--KLPRAHTCFNRLDLP 931 >URB1_RAT P51593 rattus norvegicus (rat). dna binding protein ure-b1 (ec 6.3.2.-). 10/1996 Length = 310 Score = 85.4 bits (208), Expect = 4e-16 Identities = 65/250 (26%), Positives = 110/250 (44%), Gaps = 19/250 (7%) Query: 623 GRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQSSDAD 682 GR + ++ L R K +LG+ V + D D Y+ L L+ + D Sbjct: 45 GRYVAKAVMTTALLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLL------END 98 Query: 683 AVFSAMDLAFAVDLCKEEGGGQV-ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPL 741 DL F+ ++ +E G +V +L PNG NI VT +N EYV + RM + L Sbjct: 99 VSTLGYDLTFSTEV-QEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQL 157 Query: 742 HAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFK 801 A +G +++PK + T ++ LL G +++ L S T ++ + + Sbjct: 158 AAFLEGFYEIIPKRLISIFTEQELELLYTGLPTIDIDDLKSNTEYHKYQSNSIQ-----I 212 Query: 802 RWFWSIVERMSMTERQDLVYFWTSSPSLP----ASEEGFQPMPSITIRPPD--DQHLPTA 855 +WFW + +R + F T + +P A+ EG + I D LP+A Sbjct: 213 QWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSA 272 Query: 856 NTCISRLYVP 865 +TC ++L +P Sbjct: 273 HTCFNQLDLP 282 >UE3A_HUMAN Q05086 homo sapiens (human). ubiquitin-protein ligase e3a (ec 6.3.2.-) (oncogenic protein- associated protein e6-ap) (human papillomavirus e6-associated protein). 5/2000 Length = 875 Score = 83.9 bits (204), Expect = 1e-15 Identities = 68/249 (27%), Positives = 117/249 (46%), Gaps = 12/249 (4%) Query: 619 FRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQS 678 F IG +LGL + N + + V + L+G+K + D PV+Y+SL+ L+ + Sbjct: 612 FTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGN 671 Query: 679 SDADAVFSAMDLAFAVDLCKEEGGGQV-ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVA 737 + D M + F + G + +L NG IP+T +N E+V Y+++ + Sbjct: 672 VEDD-----MMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSV 726 Query: 738 EQPLHAMRKGLLDVLPKNSLEDL-TAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEK 796 E+ A R+G V ++ L+ L E+ LL+ G ++ Q L T + + G + Sbjct: 727 EKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEY--DGGYTRDS 784 Query: 797 LLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTAN 856 +L R FW IV + +++ + F T + P G M I PD + LPT++ Sbjct: 785 VL--IREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKM-IIAKNGPDTERLPTSH 841 Query: 857 TCISRLYVP 865 TC + L +P Sbjct: 842 TCFNVLLLP 850 >HUL5_YEAST P53119 saccharomyces cerevisiae (baker's yeast). probable ubiquitin--protein ligase hul5 (ec 6.3.2.-). 5/2000 Length = 910 Score = 83.1 bits (202), Expect = 2e-15 Identities = 67/252 (26%), Positives = 125/252 (49%), Gaps = 21/252 (8%) Query: 622 IGRILGLCLLQNELCPITLNRHVIKVLL----GRKVNWHDFAFFDPVMYESLRQLILASQ 677 +G+++G CL ++ L ++ +K LL G ++ D +D V+Y +L +L+ + Sbjct: 647 LGKVVGKCLYEHVLIDVSFADFFLKKLLNYSNGFLSSFSDLGSYDSVLYNNLIKLL--NM 704 Query: 678 SSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVA 737 ++D ++DL F +D E V+LIPNG VT NV YV K ++++ Sbjct: 705 TTDE---IKSLDLTFEIDE-PESSAKVVDLIPNGSKTYVTKDNVLLYVTKVTDYKLNKRC 760 Query: 738 EQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGE-VNVQMLISFTSFNDESGENAEK 796 +P+ A GL ++ + +E + + ++L++G + +++ L S T + E+ Sbjct: 761 FKPVSAFHGGLSVIIAPHWMEMFNSIELQMLISGERDNIDLDDLKSNTEYGGYKEED--- 817 Query: 797 LLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPM-PSITIRPPDDQ--HLP 853 Q FW ++ E+ + + F TS P P +GF+ + P IR + LP Sbjct: 818 --QTIVDFWEVLNEFKFEEKLNFLKFVTSVPQAPL--QGFKALDPKFGIRNAGTEKYRLP 873 Query: 854 TANTCISRLYVP 865 TA+TC++ L +P Sbjct: 874 TASTCVNLLKLP 885 >UE3A_MOUSE O08759 mus musculus (mouse). ubiquitin-protein ligase e3a (ec 6.3.2.-) (oncogenic protein- associated protein e6-ap). 5/2000 Length = 885 Score = 81.5 bits (198), Expect = 6e-15 Identities = 67/243 (27%), Positives = 114/243 (46%), Gaps = 12/243 (4%) Query: 625 ILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQSSDADAV 684 ILGL + N + + V + L+G+K + D PV+Y+SL+ L+ S + D Sbjct: 628 ILGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGSVEDD-- 685 Query: 685 FSAMDLAFAVDLCKEEGGGQV-ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPLHA 743 M + F + G + +L NG IP+T +N E+V Y+++ + E+ A Sbjct: 686 ---MMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVISYSDYILNKSVEKQFKA 742 Query: 744 MRKGLLDVLPKNSLEDL-TAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKR 802 R+G V ++ L+ L E+ LL+ G ++ Q L T + + G E ++ R Sbjct: 743 FRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEY--DGGYTRESVV--IR 798 Query: 803 WFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTANTCISRL 862 FW IV + +++ + F T + P G M I PD + LPT++TC + L Sbjct: 799 EFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGLGKLKM-IIAKNGPDTERLPTSHTCFNVL 857 Query: 863 YVP 865 +P Sbjct: 858 LLP 860 >HUL4_YEAST P40985 saccharomyces cerevisiae (baker's yeast). probable ubiquitin--protein ligase hul4 (ec 6.3.2.-). 5/2000 Length = 892 Score = 69.5 bits (167), Expect = 3e-11 Identities = 58/264 (21%), Positives = 114/264 (42%), Gaps = 16/264 (6%) Query: 609 GKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYES 668 GKN++ L + G ++GL + + + + + + K L +++ D++ P + Sbjct: 607 GKNSQLEL--YYLFGVVMGLAIFNSTILDLQFPKALYKKLCSEPLSFEDYSELFPETSRN 664 Query: 669 LRQLILASQSSDADAVFSAMDLAFAV------DLCKEEGGGQVELIPNGVNIPVTPQNVY 722 L +++ ++ + D + + D + VEL NG N+P+T N + Sbjct: 665 LIKMLNYTEDNFEDVFSLTFETTYRNNNWILNDSKSSKEYVTVELCENGRNVPITQSNKH 724 Query: 723 EYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPK-NSLEDLTAEDFRLLVNGCGE---VNVQ 778 E+V K+ E + E + G V + NS++ +E+ LV G E + + Sbjct: 725 EFVMKWVEFYLEKSIEPQYNKFVSGFKRVFAECNSIKLFNSEELERLVCGDEEQTKFDFK 784 Query: 779 MLISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQP 838 L S T + +++ + WFW I+E ++ L+ F T+S +PA+ P Sbjct: 785 SLRSVTKYVGGFSDDSRAVC----WFWEIIESWDYPLQKKLLQFVTASDRIPATGISTIP 840 Query: 839 MPSITIRPPDDQHLPTANTCISRL 862 + D LP A+TC + + Sbjct: 841 FKISLLGSHDSDDLPLAHTCFNEI 864 >UFD4_YEAST P33202 saccharomyces cerevisiae (baker's yeast). ubiquitin fusion degradation protein 4 (ub fusion protein 4). 11/1997 Length = 1483 Score = 58.2 bits (138), Expect = 7e-08 Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 17/210 (8%) Query: 662 DPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQNV 721 DP++ +SL+ ++ + D + ++ L F V G +ELIP G N + NV Sbjct: 1259 DPLLAKSLKYIVA---NKDDNMTLESLSLTFTVP-----GNDDIELIPGGCNKSLNSSNV 1310 Query: 722 YEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLI 781 EY+ + + E+ L A +G V + L ++ + + G E + M Sbjct: 1311 EEYIHGVIDQILGKGIEKQLKAFIEGFSKVFSYERMLILFPDEL-VDIFGRVEEDWSMAT 1369 Query: 782 SFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLP-ASEEGFQPMP 840 +T+ N E G + + F SI+ ER+ + F T SP LP + P Sbjct: 1370 LYTNLNAEHGYTMDSSIIHD--FISIISAFGKHERRLFLQFLTGSPKLPIGGFKSLNPKF 1427 Query: 841 SITIRPPD-----DQHLPTANTCISRLYVP 865 ++ ++ + D++LP+ TC + L +P Sbjct: 1428 TVVLKHAEDGLTADEYLPSVMTCANYLKLP 1457 >Y032_HUMAN Q15034 homo sapiens (human). hypothetical protein kiaa0032. 5/2000 Length = 1050 Score = 56.2 bits (133), Expect = 3e-07 Identities = 60/255 (23%), Positives = 97/255 (37%), Gaps = 21/255 (8%) Query: 617 NCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILAS 676 N F IG GL + + + + + K LL K D P SL++L L Sbjct: 786 NWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQEL-LDY 844 Query: 677 QSSDADAVFSAMDLAFAVDLCKEEGG--GQVELIPNGVNIPVTPQNVYEYVRKYAEHRML 734 D + F L F + C+E G Q +LIP G N+ V N E+V Y + Sbjct: 845 PGEDVEETFC---LNFTI--CRESYGVIEQKKLIPGGDNVTVCKDNRQEFVDAYVNYVFQ 899 Query: 735 VVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENA 794 + + A G L V LE + R ++ G N + L + + Sbjct: 900 ISVHEWYTAFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWEELEETAIYKGDYSATH 959 Query: 795 EKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITI----RPPDDQ 850 + + FW + +++ + F T S +P M S+ I ++ Sbjct: 960 PTV----KLFWETFHEFPLEKKKKFLLFLTGSDRIP-----IYGMASLQIVIQSTASGEE 1010 Query: 851 HLPTANTCISRLYVP 865 +LP A+TC + L +P Sbjct: 1011 YLPVAHTCYNLLDLP 1025 >TR12_HUMAN Q14669 homo sapiens (human). thyroid receptor interacting protein 12 (trip12) (kiaa0045). 12/1998 Length = 1992 Score = 50.4 bits (118), Expect = 2e-05 Identities = 63/289 (21%), Positives = 116/289 (39%), Gaps = 34/289 (11%) Query: 605 TPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNW--HDFAFFD 662 T +P + ++ FR +G+++ ++ L + L K +L ++ + HD D Sbjct: 1684 TAKPAHIAKVKMK-FRFLGKLMAKAIMDFRLVDLPLGLPFYKWMLRQETSLTSHDLFDID 1742 Query: 663 PVMYES---LRQLILASQSSDADAVFSAMDLAFAVDL-----CKEEGGG---------QV 705 PV+ S L ++ + + D + L +A++ C E G + Sbjct: 1743 PVVARSVYHLEDIVRQKKRLEQDKSQTKESLQYALETLTMNGCSVEDLGLDFTLPGFPNI 1802 Query: 706 ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDF 765 EL G +IPVT N+ EY+R + + + R G V P + L+ E+ Sbjct: 1803 ELKKGGKDIPVTIHNLEEYLRLVIFWALNEGVSRQFDSFRDGFESVFPLSHLQYFYPEEL 1862 Query: 766 RLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTS 825 L+ G + G + + ++ + I+ +++ + F T Sbjct: 1863 DQLLCGSKADTWDAKTLMECCRPDHGYTHDS--RAVKFLFEILSSFDNEQQRLFLQFVTG 1920 Query: 826 SPSLPASEEGFQPM-PSITI--------RPPDDQHLPTANTCISRLYVP 865 SP LP GF+ + P +TI PDD LP+ TC++ L +P Sbjct: 1921 SPRLPVG--GFRSLNPPLTIVRKTFESTENPDD-FLPSVMTCVNYLKLP 1966 >PAB1_MOUSE P29341 mus musculus (mouse). polyadenylate-binding protein 1 (poly(a) binding protein 1) (pabp 1). 7/1998 Length = 636 Score = 49.2 bits (115), Expect = 3e-05 Identities = 25/70 (35%), Positives = 36/70 (50%) Query: 480 PLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAMEL 539 P +Q LGERL+P +QAM P+ A KITGM R++V+EA+ + Sbjct: 554 PPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAV 613 Query: 540 IVAHGRENGA 549 + AH + A Sbjct: 614 LQAHQAKEAA 623 >PAB1_HUMAN P11940 homo sapiens (human). polyadenylate-binding protein 1 (poly(a) binding protein 1) (pabp 1). 7/1998 Length = 636 Score = 48.8 bits (114), Expect = 5e-05 Identities = 25/70 (35%), Positives = 35/70 (49%) Query: 480 PLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAMEL 539 P +Q LGERL+P +QAM P A KITGM R++V+EA+ + Sbjct: 554 PPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAV 613 Query: 540 IVAHGRENGA 549 + AH + A Sbjct: 614 LQAHQAKEAA 623 >PABP_XENLA P20965 xenopus laevis (african clawed frog). polyadenylate-binding protein (poly(a) binding protein) (pabp). 7/1998 Length = 633 Score = 48.0 bits (112), Expect = 8e-05 Identities = 25/70 (35%), Positives = 34/70 (47%) Query: 480 PLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAMEL 539 P +Q LGERL+P +QAM P A KITGM R +V+EA+ + Sbjct: 552 PPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRLKVDEAVAV 611 Query: 540 IVAHGRENGA 549 + AH + A Sbjct: 612 LQAHQAKEAA 621 >PABP_DROME P21187 drosophila melanogaster (fruit fly). polyadenylate-binding protein (poly(a) binding protein) (pabp). 2/1995 Length = 632 Score = 41.4 bits (95), Expect = 0.008 Identities = 21/59 (35%), Positives = 29/59 (48%) Query: 485 RQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAMELIVAH 543 +Q LGERLYP ++ M A KITGM +A+VEEA+ ++ H Sbjct: 567 KQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQVH 625 >PAB5_ARATH Q05196 arabidopsis thaliana (mouse-ear cress). polyadenylate-binding protein 5 (poly(a) binding protein 5) (pabp 5). 11/1995 Length = 668 Score = 37.1 bits (84), Expect = 0.15 Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 484 HRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAMELI 540 H + LG+ LYP V+ +PA +K+TGM +A+V EA++++ Sbjct: 590 HPRMLGDHLYPLVEQQEPANPAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVL 646 >PAB2_ARATH P42731 arabidopsis thaliana (mouse-ear cress). polyadenylate-binding protein 2 (poly(a) binding protein 2) (pabp 2). 12/1998 Length = 629 Score = 34.4 bits (77), Expect = 0.99 Identities = 18/56 (32%), Positives = 28/56 (49%) Query: 485 RQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAMELI 540 R LGE LYP V+ ++ A+K+TGM +A+V EAM+++ Sbjct: 556 RTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVL 611 >MCM3_MOUSE P25206 mus musculus (mouse). dna replication licensing factor mcm3 (dna polymerase alpha holoenzyme-associated protein p1) (p1-mcm3). 5/2000 Length = 812 Score = 33.6 bits (75), Expect = 1.7 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Query: 141 LADQPHLLQPNARKEDLFGRPSQGLYSSSAGSGKCLVEVTMDRNCLEVLPTKMSYAANLK 200 L Q + AR + R + L + K + T+D E + YA K Sbjct: 597 LRSQDSMSSDTARTSPVTARTLETLIRLATAHAKARMSKTVDLQDAEEAVELVQYAY-FK 655 Query: 201 NVMNMQNRQKKAGEDQSMLAEEADSSK 227 V+ + ++KKA ED+S L +E + S+ Sbjct: 656 KVLEKEKKRKKASEDESDLEDEEEKSQ 682 >PABP_SCHPO P31209 schizosaccharomyces pombe (fission yeast). polyadenylate-binding protein (poly(a) binding protein) (pabp). 7/1998 Length = 653 Score = 32.5 bits (72), Expect = 3.8 Identities = 18/61 (29%), Positives = 26/61 (42%) Query: 480 PLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAMEL 539 P + +Q LGE LYP+V + + KITGM RV EA+ + Sbjct: 581 PEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERVNEAIGV 640 Query: 540 I 540 + Sbjct: 641 L 641 >PROB_SERMA P17856 serratia marcescens. glutamate 5-kinase (ec 2.7.2.11) (gamma-glutamyl kinase) (gk). 10/1996 Length = 367 Score = 31.7 bits (70), Expect = 6.6 Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 14/99 (14%) Query: 279 RWRLSLELFGRVFMEDVGAEP----GSILTELGGFEVKESKFRREMEKLRNQQSRDLSLE 334 RW G + ++D E GS L G EVK R E+ ++RN RDL+ Sbjct: 267 RWIFGAPPAGEITVDDGAVEAMMARGSSLLPKGIREVKGDFSRGEVIRIRNLTGRDLAHG 326 Query: 335 VDRDRDLLIQQTMRQLNNHFGRRCATT------PMAVHR 367 V R MR + H + + P+AVHR Sbjct: 327 VSRYN----SDAMRMIAGHHSQEISEILGYEYGPVAVHR 361 >ST20_CANAL Q92212 candida albicans (yeast). serine/threonine-protein kinase ste20 homolog (ec 2.7.1.-). 5/2000 Length = 1230 Score = 31.3 bits (69), Expect = 8.6 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 3/100 (3%) Query: 309 FEVKESKFRREMEKLRNQQSRDLSLEVDRDRDLLIQQTMRQLNNHFGRRCATTPMAVHRV 368 +E++++K++ +KLR +++R+L E+ R R+ +Q +Q A+ + Sbjct: 839 YEIQQTKYQEAQQKLREKKARELE-EIQRLREKNERQNRQQETGQNNADTASGGSNIAPP 897 Query: 369 KVTFKDEPGEGSGVARSFYTA--IAQAFLSNEKLPNLDCI 406 +P GSG R A IAQ +K NL I Sbjct: 898 VPVPNKKPPSGSGGGRDAKQAALIAQKKREEKKRKNLQII 937 >KEND_HUMAN O95613 homo sapiens (human). kendrin (kiaa0402). 5/2000 Length = 3321 Score = 31.3 bits (69), Expect = 8.6 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 10/90 (11%) Query: 176 LVEVTMDRNCLEVLPTKMSYAANLK-NVMNMQNRQKKAGEDQSMLAEEA---------DS 225 L E+ + L+V+ T+ S LK + N+Q QK+ ++++ E+ + Sbjct: 1683 LRELEEENTSLKVIYTRSSEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHEL 1742 Query: 226 SKPGPSAHDVAAQLKSSLLAEIGLTESEGP 255 S GP H+V+ SL +E+ +++ GP Sbjct: 1743 SLMGPVVHEVSDSQAGSLQSELLCSQAGGP 1772 >FIXK_RHIME P13295 rhizobium meliloti (sinorhizobium meliloti). nitrogen fixation regulation protein fixk. 5/2000 Length = 211 Score = 31.3 bits (69), Expect = 8.6 Identities = 22/74 (29%), Positives = 39/74 (51%), Gaps = 10/74 (13%) Query: 691 AFAVDLCKEEGGGQVELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVA---EQPLHAMRKG 747 AF VDLC+ +GGG+ + +P++ Q++ +Y+ E VV E+ L A+R Sbjct: 142 AFLVDLCERQGGGR------QLRLPMSRQDIADYLGLTIETVSRVVTKLKERSLIALRDA 195 Query: 748 -LLDVLPKNSLEDL 760 +D++ +L L Sbjct: 196 RTIDIMKPEALRSL 209 >CC24_YEAST P11433 saccharomyces cerevisiae (baker's yeast). cell division control protein 24 (calcium regulatory protein). 7/1999 Length = 854 Score = 31.3 bits (69), Expect = 8.6 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 8/78 (10%) Query: 610 KNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAF--FDPVMYE 667 K EA L+ +NI R + NE T N V+K L GR VNW + F ++Y Sbjct: 435 KELEAALDISKNIARSI------NENQRRTENHQVVKKLYGRVVNWKGYRISKFGELLYF 488 Query: 668 SLRQLILASQSSDADAVF 685 + + SS+ + F Sbjct: 489 DKVFISTTNSSSEPEREF 506 Searching.................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 100K_RAT Q62671 rattus norvegicus (rat). 100 kda protein (ec... 1236 0.0 HYDP_DROME P51592 drosophila melanogaster (fruit fly). hyper... 709 0.0 NED4_HUMAN P46934 homo sapiens (human). nedd-4 protein (ec 6... 344 4e-94 PUB1_SCHPO Q92462 schizosaccharomyces pombe (fission yeast).... 343 1e-93 NED4_MOUSE P46935 mus musculus (mouse). nedd-4 protein (ec 6... 343 1e-93 RSP5_YEAST P39940 saccharomyces cerevisiae (baker's yeast). ... 325 2e-88 UE3A_HUMAN Q05086 homo sapiens (human). ubiquitin-protein li... 314 6e-85 UE3A_MOUSE O08759 mus musculus (mouse). ubiquitin-protein li... 302 2e-81 HUL4_YEAST P40985 saccharomyces cerevisiae (baker's yeast). ... 281 4e-75 URB1_RAT P51593 rattus norvegicus (rat). dna binding protein... 280 8e-75 TR12_HUMAN Q14669 homo sapiens (human). thyroid receptor int... 272 3e-72 Y032_HUMAN Q15034 homo sapiens (human). hypothetical protein... 270 6e-72 HUL5_YEAST P53119 saccharomyces cerevisiae (baker's yeast). ... 251 6e-66 UFD4_YEAST P33202 saccharomyces cerevisiae (baker's yeast). ... 224 4e-58 PAB1_HUMAN P11940 homo sapiens (human). polyadenylate-bindin... 89 5e-17 PABP_XENLA P20965 xenopus laevis (african clawed frog). poly... 88 6e-17 PAB1_MOUSE P29341 mus musculus (mouse). polyadenylate-bindin... 88 8e-17 Sequences not found previously or not previously below threshold: PABP_DROME P21187 drosophila melanogaster (fruit fly). polya... 67 1e-10 PABP_SCHPO P31209 schizosaccharomyces pombe (fission yeast).... 44 0.001 PAB2_ARATH P42731 arabidopsis thaliana (mouse-ear cress). po... 43 0.003 PAB5_ARATH Q05196 arabidopsis thaliana (mouse-ear cress). po... 43 0.003 PABP_YEAST P04147 saccharomyces cerevisiae polyadenylate-bin... 41 0.010 RNR_AQUAE O67834 aquifex aeolicus. ribonuclease r (ec 3.1.-.... 33 2.2 NIRA_EMENI P28348 emericella nidulans (aspergillus nidulans)... 33 2.9 YK44_YEAST P36023 saccharomyces cerevisiae (baker's yeast). ... 31 8.4 SYQ_YEAST P13188 saccharomyces cerevisiae (baker's yeast). g... 31 8.4 >100K_RAT Q62671 rattus norvegicus (rat). 100 kda protein (ec 6.3.2.-). 7/1999 Length = 889 Score = 1236 bits (3163), Expect = 0.0 Identities = 765/889 (86%), Positives = 765/889 (86%) Query: 1 MMSARGDFLNYALSLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNQQTTLDT 60 MMSARGDFLNYALSLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNQQTTLDT Sbjct: 1 MMSARGDFLNYALSLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNQQTTLDT 60 Query: 61 PQXXXXXXXXXXXXGIXXXXXXXXXXXXTSQSATLNDKDDESLPAETGQNHPFFRRSDSM 120 PQ GI TSQSATLNDKDDESLPAETGQNHPFFRRSDSM Sbjct: 61 PQLERKRTRELLELGIDNEDSEHENDDDTSQSATLNDKDDESLPAETGQNHPFFRRSDSM 120 Query: 121 TFLGCIPPNPFEVPLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSAGSGKCLVEVT 180 TFLGCIPPNPFEVPLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSAGSGKCLVEVT Sbjct: 121 TFLGCIPPNPFEVPLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSAGSGKCLVEVT 180 Query: 181 MDRNCLEVLPTKMSYAANLKNVMNMQNRQKKAGEDQSMLAEEADSSKPGPSAHDVAAQLK 240 MDRNCLEVLPTKMSYAANLKNVMNMQNRQKKAGEDQSMLAEEADSSKPGPSAHDVAAQLK Sbjct: 181 MDRNCLEVLPTKMSYAANLKNVMNMQNRQKKAGEDQSMLAEEADSSKPGPSAHDVAAQLK 240 Query: 241 SSLLAEIGLTESEGPPLTSFRPQCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPG 300 SSLLAEIGLTESEGPPLTSFRPQCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPG Sbjct: 241 SSLLAEIGLTESEGPPLTSFRPQCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPG 300 Query: 301 SILTELGGFEVKESKFRREMEKLRNQQSRDLSLEVDRDRDLLIQQTMRQLNNHFGRRCAT 360 SILTELGGFEVKESKFRREMEKLRNQQSRDLSLEVDRDRDLLIQQTMRQLNNHFGRRCAT Sbjct: 301 SILTELGGFEVKESKFRREMEKLRNQQSRDLSLEVDRDRDLLIQQTMRQLNNHFGRRCAT 360 Query: 361 TPMAVHRVKVTFKDEPGEGSGVARSFYTAIAQAFLSNEKLPNLDCIQNANKGTHTSLMQX 420 TPMAVHRVKVTFKDEPGEGSGVARSFYTAIAQAFLSNEKLPNLDCIQNANKGTHTSLMQ Sbjct: 361 TPMAVHRVKVTFKDEPGEGSGVARSFYTAIAQAFLSNEKLPNLDCIQNANKGTHTSLMQR 420 Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLSIDTRPFRPASEGNPSDDPDP 480 QLSIDTRPFRPASEGNPSDDPDP Sbjct: 421 LRNRGERDREREREREMRRSSGLRAGSRRDRDRDFRRQLSIDTRPFRPASEGNPSDDPDP 480 Query: 481 LPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAMELI 540 LPAHRQALGERLYPRVQAMQPAFASKITGM RARVEEAMELI Sbjct: 481 LPAHRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELI 540 Query: 541 VAHGRENGAXXXXXXXXXXXXEKVQENRKRHGSSRSVVXXXXXXXXXXXXNAPLFYQPGK 600 VAHGRENGA EKVQENRKRHGSSRSVV NAPLFYQPGK Sbjct: 541 VAHGRENGADSILDLGLLDSSEKVQENRKRHGSSRSVVDMDLDDTDDGDDNAPLFYQPGK 600 Query: 601 RGFYTPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAF 660 RGFYTPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAF Sbjct: 601 RGFYTPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAF 660 Query: 661 FDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQN 720 FDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQN Sbjct: 661 FDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQN 720 Query: 721 VYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQML 780 VYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQML Sbjct: 721 VYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQML 780 Query: 781 ISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMP 840 ISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMP Sbjct: 781 ISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMP 840 Query: 841 SITIRPPDDQHLPTANTCISRLYVPXXXXXXXXXXXXXXXXXXXNFGFV 889 SITIRPPDDQHLPTANTCISRLYVP NFGFV Sbjct: 841 SITIRPPDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFGFV 889 >HYDP_DROME P51592 drosophila melanogaster (fruit fly). hyperplastic discs protein (hyd protein) (ec 6.3.2.-). 12/1998 Length = 2895 Score = 709 bits (1810), Expect = 0.0 Identities = 281/635 (44%), Positives = 374/635 (58%), Gaps = 34/635 (5%) Query: 263 QCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPGSILTELGGFEVKESKFRREMEK 322 Q +F G+ + +L + L+L+LFGR FM+DVG E GS+L EL GF VKE +FRR MEK Sbjct: 2287 QSNFSGIAPCNFLLSAK--LTLDLFGRPFMDDVGMEHGSVLPELRGFPVKEMRFRRHMEK 2344 Query: 323 LRNQQSRDLSL-EVDRDRDLLIQQTMRQLNNHFGR--RCATTPMAVHRVKVTFKDEPGEG 379 LRN Q RDL L +++R+R+ LI QT ++LN FG R P+ +RVKVTFKDEPGEG Sbjct: 2345 LRNGQQRDLVLCKLERNRESLIVQTFKELNTQFGNQSRRIQPPITFNRVKVTFKDEPGEG 2404 Query: 380 SGVARSFYTAIAQAFLSNEKLPNLDCIQNANKGTHTSLMQXXXXXXXXXXXXXXXXXXXX 439 SGVARSFYT+IA+A L++ K+PNL+ +Q H+ + Sbjct: 2405 SGVARSFYTSIAEALLASAKIPNLESVQVGTN--HSKYVVPFSSILRTTVSGSSRDQSTL 2462 Query: 440 XXXXXXXXXXXXXXXXXXQLSIDTRPFRPASEGN---PSDDPDPLPAHRQALGERLYPRV 496 L++D RP+ P + + P D L H Q +GERLYP++ Sbjct: 2463 QRRGSNSKILWRSARERKALNLDARPYTPPNSSDNATPESLNDHLSVHLQQIGERLYPKI 2522 Query: 497 QAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAMELIVAHGRENGAXXXXXXX 556 ++ A KITGM R +V EA+E+I + + Sbjct: 2523 HSINQTHAPKITGMLLEIPTPQLLSVISSDETLRQKVNEAIEIITFKQKSETSA------ 2576 Query: 557 XXXXXEKVQENRKRHGSSRSVVXXXXXXXXXXXXNAPLFYQPGKRGFYTPRPGKNTEARL 616 Q ++ + S VV N PLFY PGKRGFY PR G + R+ Sbjct: 2577 --------QSSQPKKSPSVVVVDPVDDD------NEPLFYSPGKRGFYIPRQGFASFERI 2622 Query: 617 NCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILAS 676 N FRNIGR++GLCLLQNEL P+ L RHV+K +L RK+ +HD AFFDP +YES RQ+I + Sbjct: 2623 NAFRNIGRLIGLCLLQNELLPLFLQRHVLKYILRRKIKFHDLAFFDPALYESFRQIIQNA 2682 Query: 677 QSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQNVYEYVRKYAEHRM-LV 735 Q+ + + + M+L F +DL KEEG G ELIP G ++ V+ + +Y ++ + Sbjct: 2683 QTKEGEETINRMELCFVIDLMKEEGCGNRELIPGGRDV-VSHRVIYSSTSDAIQNIDXIK 2741 Query: 736 VAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAE 795 E+ L A++ G+ DVLP NS+ +LTAED RLL+NG G++NV LIS+T+FNDES E + Sbjct: 2742 SQEKALEALKDGVFDVLPDNSMINLTAEDLRLLLNGVGDINVSTLISYTTFNDESSEGPD 2801 Query: 796 KL-LQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPT 854 KL +FK+WFWSIVE+M++ ERQ LVYFWT SP+LPASEEGFQP+PS+TIRP DD HLPT Sbjct: 2802 KLX-KFKKWFWSIVEKMNIMERQHLVYFWTGSPALPASEEGFQPLPSVTIRPADDSHLPT 2860 Query: 855 ANTCISRLYVPXXXXXXXXXXXXXXXXXXXNFGFV 889 ANTCISRLY+P NFGFV Sbjct: 2861 ANTCISRLYIPLYSSKSILRSKMLMAIKSKNFGFV 2895 Score = 257 bits (649), Expect = 8e-68 Identities = 69/209 (33%), Positives = 107/209 (51%), Gaps = 26/209 (12%) Query: 3 SARGDFLNYALSLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNQQTTLDTPQ 62 ++R DF Y LSLMRSH EH D LPVLD+ +L+H+AYV A +Y+++ N D Sbjct: 1913 NSRRDFFTYCLSLMRSHTSEHRDALPVLDITALRHIAYVLDAFVYYMR--NDSGFYDKQD 1970 Query: 63 XXXXXXXXXXXXGIXXXXXXXXXXXXTSQSATLNDKDDE------SLPA--ETGQNHPFF 114 I + A L + + + S+P+ + + H FF Sbjct: 1971 SISGR--------INNLSPMTESYDTDDELANLEEFNADVQMSASSMPSGSQGTRRHAFF 2022 Query: 115 RRSDSMTFLGCIPPNPFEVPLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSAGSGK 174 RS+S LGC P FE+PL A+PLAD+PHLLQPN+++++LF + +++ SG Sbjct: 2023 ARSESTLTLGCSAPEGFELPLDMAMPLADKPHLLQPNSKRQELFANLPLLVTTNANNSG- 2081 Query: 175 CLVEVTMD---RNCLEVLPTKMSYAANLK 200 T D + + PT++ ++ +LK Sbjct: 2082 ----ATNDGDGASIFDYTPTRLGFSNSLK 2106 >NED4_HUMAN P46934 homo sapiens (human). nedd-4 protein (ec 6.3.2.-) (kiaa0093) (fragment). 7/1999 Length = 927 Score = 344 bits (873), Expect = 4e-94 Identities = 72/268 (26%), Positives = 119/268 (43%), Gaps = 23/268 (8%) Query: 606 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVM 665 P G E L+ F+ IGR+ G+ + +L R K++L + + HD D Sbjct: 649 PNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLHKPITLHDMESVDSEY 708 Query: 666 YESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQV---ELIPNGVNIPVTPQNVY 722 Y SLR ++ + +DL F +D EE GQ EL G I VT +N Sbjct: 709 YNSLRWILENDPTE--------LDLRFIID---EELFGQTHQHELKNGGSEIVVTNKNKK 757 Query: 723 EYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLIS 782 EY+ + R + ++ + A ++G +++P++ ++ + LL+ G G+V+V Sbjct: 758 EYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVNDWRE 817 Query: 783 FTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLP----ASEEGFQP 838 T + + N Q +WFW V M +R L+ F T + +P A G Sbjct: 818 HTKYKNGYSANH----QVIQWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAELYGSNG 873 Query: 839 MPSITIRP-PDDQHLPTANTCISRLYVP 865 S T+ + LP A+TC +RL +P Sbjct: 874 PQSFTVEQWGTPEKLPRAHTCFNRLDLP 901 >PUB1_SCHPO Q92462 schizosaccharomyces pombe (fission yeast). ubiquitin--protein ligase pub1 (ec 6.3.2.-). 12/1998 Length = 767 Score = 343 bits (870), Expect = 1e-93 Identities = 69/265 (26%), Positives = 115/265 (43%), Gaps = 18/265 (6%) Query: 606 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVM 665 P G N E LN F+ IGR++GL + K++L +KV D D Sbjct: 491 PHSGINPE-HLNYFKFIGRVIGLAIFHRRFVDAFFVVSFYKMILQKKVTLQDMESMDAEY 549 Query: 666 YESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQNVYEYV 725 Y SL ++ + D FS D F + ++L PNG NI VT +N EYV Sbjct: 550 YRSLVWILDNDITGVLDLTFSVEDNCFGEVVT-------IDLKPNGRNIEVTEENKREYV 602 Query: 726 RKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTS 785 R+ E+ +A +G +++P+ + + LL+ G E++++ T Sbjct: 603 DLVTVWRIQKRIEEQFNAFHEGFSELIPQELINVFDERELELLIGGISEIDMEDWKKHTD 662 Query: 786 FNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASE----EGFQPMPS 841 + S + Q +WFW +++ S ++ L+ F T + +P + +G Sbjct: 663 YRSYSEND-----QIIKWFWELMDEWSNEKKSRLLQFTTGTSRIPVNGFKDLQGSDGPRK 717 Query: 842 ITIR-PPDDQHLPTANTCISRLYVP 865 TI + LP A+TC +RL +P Sbjct: 718 FTIEKAGEPNKLPKAHTCFNRLDLP 742 >NED4_MOUSE P46935 mus musculus (mouse). nedd-4 protein (ec 6.3.2.-) (fragment). 11/1997 Length = 957 Score = 343 bits (870), Expect = 1e-93 Identities = 72/268 (26%), Positives = 117/268 (42%), Gaps = 23/268 (8%) Query: 606 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVM 665 P G E L+ F+ IGR+ G+ + +L R K++L + + HD D Sbjct: 679 PNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLQKLITLHDMESVDSEY 738 Query: 666 YESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQV---ELIPNGVNIPVTPQNVY 722 Y SLR ++ + +DL F +D EE GQ EL G I VT +N Sbjct: 739 YSSLRWILENDPTE--------LDLRFIID---EELFGQTHQHELKTGGSEIVVTNKNKK 787 Query: 723 EYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLIS 782 EY+ + R + ++ + A ++G +++P++ ++ + LL+ G G+V+V Sbjct: 788 EYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVNDWRE 847 Query: 783 FTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLP----ASEEGFQP 838 T + + N Q WFW V M +R L+ F T + +P A G Sbjct: 848 HTKYKNGYSMNH----QVIHWFWKAVWMMDSEKRIRLLQFVTGTSRVPMNGFAELYGSNG 903 Query: 839 MPSITIRP-PDDQHLPTANTCISRLYVP 865 S T+ LP A+TC +RL +P Sbjct: 904 PQSFTVEQWGTPDKLPRAHTCFNRLDLP 931 >RSP5_YEAST P39940 saccharomyces cerevisiae (baker's yeast). ubiquitin--protein ligase rsp5 (ec 6.3.2.-). 7/1999 Length = 809 Score = 325 bits (825), Expect = 2e-88 Identities = 69/265 (26%), Positives = 116/265 (43%), Gaps = 18/265 (6%) Query: 606 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVM 665 P G N E LN F+ IGR++GL + + K++L +KV D D + Sbjct: 533 PNSGINPE-HLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEV 591 Query: 666 YESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQNVYEYV 725 Y SL ++ S D FSA D F + V+L P+G NI VT N EYV Sbjct: 592 YNSLNWMLENSIDGVLDLTFSADDERFGEVVT-------VDLKPDGRNIEVTDGNKKEYV 644 Query: 726 RKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTS 785 Y + R++ ++ A G +++P++ + + LL+ G E++++ T Sbjct: 645 ELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHTD 704 Query: 786 FNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASE----EGFQPMPS 841 + + + +WFW V +R L+ F T + +P + +G Sbjct: 705 YRGYQESD-----EVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRR 759 Query: 842 ITIRPPDD-QHLPTANTCISRLYVP 865 TI + Q LP ++TC +R+ +P Sbjct: 760 FTIEKAGEVQQLPKSHTCFNRVDLP 784 >UE3A_HUMAN Q05086 homo sapiens (human). ubiquitin-protein ligase e3a (ec 6.3.2.-) (oncogenic protein- associated protein e6-ap) (human papillomavirus e6-associated protein). 5/2000 Length = 875 Score = 314 bits (795), Expect = 6e-85 Identities = 67/249 (26%), Positives = 116/249 (45%), Gaps = 12/249 (4%) Query: 619 FRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQS 678 F IG +LGL + N + + V + L+G+K + D PV+Y+SL+ L+ + Sbjct: 612 FTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGN 671 Query: 679 SDADAVFSAMDLAFAVDLCKEEGGGQV-ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVA 737 + D M + F + G + +L NG IP+T +N E+V Y+++ + Sbjct: 672 VEDD-----MMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSV 726 Query: 738 EQPLHAMRKGLLDVLPKNSLED-LTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEK 796 E+ A R+G V ++ L+ E+ LL+ G ++ Q L T + + G + Sbjct: 727 EKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEY--DGGYTRDS 784 Query: 797 LLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTAN 856 +L R FW IV + +++ + F T + P G M I PD + LPT++ Sbjct: 785 VL--IREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKM-IIAKNGPDTERLPTSH 841 Query: 857 TCISRLYVP 865 TC + L +P Sbjct: 842 TCFNVLLLP 850 >UE3A_MOUSE O08759 mus musculus (mouse). ubiquitin-protein ligase e3a (ec 6.3.2.-) (oncogenic protein- associated protein e6-ap). 5/2000 Length = 885 Score = 302 bits (765), Expect = 2e-81 Identities = 67/249 (26%), Positives = 115/249 (45%), Gaps = 13/249 (5%) Query: 619 FRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQS 678 F IG + GL + N + + V + L+G+K + D PV+Y+SL+ L+ S Sbjct: 623 FTLIGIL-GLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGS 681 Query: 679 SDADAVFSAMDLAFAVDLCKEEGGGQV-ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVA 737 + D M + F + G + +L NG IP+T +N E+V Y+++ + Sbjct: 682 VEDD-----MMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVISYSDYILNKSV 736 Query: 738 EQPLHAMRKGLLDVLPKNSLED-LTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEK 796 E+ A R+G V ++ L+ E+ LL+ G ++ Q L T + + G E Sbjct: 737 EKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEY--DGGYTRES 794 Query: 797 LLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTAN 856 ++ R FW IV + +++ + F T + P G M I PD + LPT++ Sbjct: 795 VV--IREFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGLGKLKM-IIAKNGPDTERLPTSH 851 Query: 857 TCISRLYVP 865 TC + L +P Sbjct: 852 TCFNVLLLP 860 >HUL4_YEAST P40985 saccharomyces cerevisiae (baker's yeast). probable ubiquitin--protein ligase hul4 (ec 6.3.2.-). 5/2000 Length = 892 Score = 281 bits (711), Expect = 4e-75 Identities = 58/271 (21%), Positives = 116/271 (42%), Gaps = 16/271 (5%) Query: 604 YTPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDP 663 + GKN++ L + G ++GL + + + + + + K L +++ D++ P Sbjct: 602 FDKSKGKNSQLEL--YYLFGVVMGLAIFNSTILDLQFPKALYKKLCSEPLSFEDYSELFP 659 Query: 664 VMYESLRQLILASQSSDADAVFSAMDLAFAV------DLCKEEGGGQVELIPNGVNIPVT 717 +L +++ ++ + D + + D + VEL NG N+P+T Sbjct: 660 ETSRNLIKMLNYTEDNFEDVFSLTFETTYRNNNWILNDSKSSKEYVTVELCENGRNVPIT 719 Query: 718 PQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPK-NSLEDLTAEDFRLLVNGCGE-- 774 N +E+V K+ E + E + G V + NS++ +E+ LV G E Sbjct: 720 QSNKHEFVMKWVEFYLEKSIEPQYNKFVSGFKRVFAECNSIKLFNSEELERLVCGDEEQT 779 Query: 775 -VNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASE 833 + + L S T + +++ + WFW I+E ++ L+ F T+S +PA+ Sbjct: 780 KFDFKSLRSVTKYVGGFSDDSRAVC----WFWEIIESWDYPLQKKLLQFVTASDRIPATG 835 Query: 834 EGFQPMPSITIRPPDDQHLPTANTCISRLYV 864 P + D LP A+TC + + + Sbjct: 836 ISTIPFKISLLGSHDSDDLPLAHTCFNEICL 866 >URB1_RAT P51593 rattus norvegicus (rat). dna binding protein ure-b1 (ec 6.3.2.-). 10/1996 Length = 310 Score = 280 bits (709), Expect = 8e-75 Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 19/250 (7%) Query: 623 GRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQSSDAD 682 GR + ++ L R K +LG+ V + D D Y+ L L+ D Sbjct: 45 GRYVAKAVMTTALLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLEN------D 98 Query: 683 AVFSAMDLAFAVDLCKEEGGGQV-ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPL 741 DL F+ ++ +E G +V +L PNG NI VT +N EYV + RM + L Sbjct: 99 VSTLGYDLTFSTEV-QEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQL 157 Query: 742 HAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFK 801 A +G +++PK + T ++ LL G +++ L S T ++ + + Sbjct: 158 AAFLEGFYEIIPKRLISIFTEQELELLYTGLPTIDIDDLKSNTEYHKYQSNSIQ-----I 212 Query: 802 RWFWSIVERMSMTERQDLVYFWTSSPSLP----ASEEGFQPMPSITIRPPD--DQHLPTA 855 +WFW + +R + F T + +P A+ EG + I D LP+A Sbjct: 213 QWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSA 272 Query: 856 NTCISRLYVP 865 +TC ++L +P Sbjct: 273 HTCFNQLDLP 282 >TR12_HUMAN Q14669 homo sapiens (human). thyroid receptor interacting protein 12 (trip12) (kiaa0045). 12/1998 Length = 1992 Score = 272 bits (687), Expect = 3e-72 Identities = 58/286 (20%), Positives = 109/286 (37%), Gaps = 28/286 (9%) Query: 605 TPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNW--HDFAFFD 662 T +P + ++ FR +G+++ ++ L + L K +L ++ + HD D Sbjct: 1684 TAKPAHIAKVKMK-FRFLGKLMAKAIMDFRLVDLPLGLPFYKWMLRQETSLTSHDLFDID 1742 Query: 663 PVMYES---LRQLILASQSSDADAVFSAMDLAFAVDL-----CKEE---------GGGQV 705 PV+ S L ++ + + D + L +A++ C E G + Sbjct: 1743 PVVARSVYHLEDIVRQKKRLEQDKSQTKESLQYALETLTMNGCSVEDLGLDFTLPGFPNI 1802 Query: 706 ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDF 765 EL G +IPVT N+ EY+R + + + R G V P + L+ E+ Sbjct: 1803 ELKKGGKDIPVTIHNLEEYLRLVIFWALNEGVSRQFDSFRDGFESVFPLSHLQYFYPEEL 1862 Query: 766 RLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTS 825 L+ G + G + + ++ + I+ +++ + F T Sbjct: 1863 DQLLCGSKADTWDAKTLMECCRPDHGYTHDS--RAVKFLFEILSSFDNEQQRLFLQFVTG 1920 Query: 826 SPSLPASEEGFQPMPSITIRP------PDDQHLPTANTCISRLYVP 865 SP LP P +R D LP+ TC++ L +P Sbjct: 1921 SPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLP 1966 >Y032_HUMAN Q15034 homo sapiens (human). hypothetical protein kiaa0032. 5/2000 Length = 1050 Score = 270 bits (684), Expect = 6e-72 Identities = 58/256 (22%), Positives = 96/256 (36%), Gaps = 15/256 (5%) Query: 613 EARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQL 672 N F IG GL + + + + + K LL K D P SL++L Sbjct: 782 FVEHNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQEL 841 Query: 673 ILASQSSDADAVFSAMDLAFAVDLCKEEGGG--QVELIPNGVNIPVTPQNVYEYVRKYAE 730 + D + F L F + C+E G Q +LIP G N+ V N E+V Y Sbjct: 842 LDY-PGEDVEETFC---LNFTI--CRESYGVIEQKKLIPGGDNVTVCKDNRQEFVDAYVN 895 Query: 731 HRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDES 790 + + + A G L V LE + R ++ G N + L + + Sbjct: 896 YVFQISVHEWYTAFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWEELEETAIYKGDY 955 Query: 791 GENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMPS-ITIRPPDD 849 + + FW + +++ + F T S +P G + I + Sbjct: 956 SATHPTV----KLFWETFHEFPLEKKKKFLLFLTGSDRIPI--YGMASLQIVIQSTASGE 1009 Query: 850 QHLPTANTCISRLYVP 865 ++LP A+TC + L +P Sbjct: 1010 EYLPVAHTCYNLLDLP 1025 >HUL5_YEAST P53119 saccharomyces cerevisiae (baker's yeast). probable ubiquitin--protein ligase hul5 (ec 6.3.2.-). 5/2000 Length = 910 Score = 251 bits (633), Expect = 6e-66 Identities = 68/259 (26%), Positives = 126/259 (48%), Gaps = 21/259 (8%) Query: 615 RLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLL----GRKVNWHDFAFFDPVMYESLR 670 +L +G+++G CL ++ L ++ +K LL G ++ D +D V+Y +L Sbjct: 640 KLKYIWFLGKVVGKCLYEHVLIDVSFADFFLKKLLNYSNGFLSSFSDLGSYDSVLYNNLI 699 Query: 671 QLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQNVYEYVRKYAE 730 +L+ ++D ++DL F +D E V+LIPNG VT NV YV K + Sbjct: 700 KLLN--MTTDE---IKSLDLTFEIDE-PESSAKVVDLIPNGSKTYVTKDNVLLYVTKVTD 753 Query: 731 HRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGE-VNVQMLISFTSFNDE 789 +++ +P+ A GL ++ + +E + + ++L++G + +++ L S T + Sbjct: 754 YKLNKRCFKPVSAFHGGLSVIIAPHWMEMFNSIELQMLISGERDNIDLDDLKSNTEYGGY 813 Query: 790 SGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPM-PSITIRPPD 848 E+ Q FW ++ E+ + + F TS P P +GF+ + P IR Sbjct: 814 KEED-----QTIVDFWEVLNEFKFEEKLNFLKFVTSVPQAP--LQGFKALDPKFGIRNAG 866 Query: 849 DQ--HLPTANTCISRLYVP 865 + LPTA+TC++ L +P Sbjct: 867 TEKYRLPTASTCVNLLKLP 885 >UFD4_YEAST P33202 saccharomyces cerevisiae (baker's yeast). ubiquitin fusion degradation protein 4 (ub fusion protein 4). 11/1997 Length = 1483 Score = 224 bits (566), Expect = 4e-58 Identities = 60/277 (21%), Positives = 109/277 (38%), Gaps = 29/277 (10%) Query: 607 RPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLG------------RKVN 654 P N E + F +G + LL N + ++ ++L + Sbjct: 1192 NPFSNNEKVIELFGYLGTFVARSLLDNRILDFRFSKVFFELLHRMSTPNVTTVPSDVETC 1251 Query: 655 WHDFAFFDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNI 714 DP++ +SL+ ++ D + ++ L F V G +ELIP G N Sbjct: 1252 LLMIELVDPLLAKSLKYIVAN---KDDNMTLESLSLTFTVP-----GNDDIELIPGGCNK 1303 Query: 715 PVTPQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGE 774 + NV EY+ + + E+ L A +G V + L ++ + + G E Sbjct: 1304 SLNSSNVEEYIHGVIDQILGKGIEKQLKAFIEGFSKVFSYERMLILFPDEL-VDIFGRVE 1362 Query: 775 VNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLP-ASE 833 + M +T+ N E G + + F SI+ ER+ + F T SP LP Sbjct: 1363 EDWSMATLYTNLNAEHGYTMDSSI--IHDFISIISAFGKHERRLFLQFLTGSPKLPIGGF 1420 Query: 834 EGFQPMPSITIRPPD-----DQHLPTANTCISRLYVP 865 + P ++ ++ + D++LP+ TC + L +P Sbjct: 1421 KSLNPKFTVVLKHAEDGLTADEYLPSVMTCANYLKLP 1457 >PAB1_HUMAN P11940 homo sapiens (human). polyadenylate-binding protein 1 (poly(a) binding protein 1) (pabp 1). 7/1998 Length = 636 Score = 88.6 bits (216), Expect = 5e-17 Identities = 25/70 (35%), Positives = 35/70 (49%) Query: 480 PLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAMEL 539 P +Q LGERL+P +QAM P A KITGM R++V+EA+ + Sbjct: 554 PPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAV 613 Query: 540 IVAHGRENGA 549 + AH + A Sbjct: 614 LQAHQAKEAA 623 >PABP_XENLA P20965 xenopus laevis (african clawed frog). polyadenylate-binding protein (poly(a) binding protein) (pabp). 7/1998 Length = 633 Score = 88.2 bits (215), Expect = 6e-17 Identities = 25/70 (35%), Positives = 34/70 (47%) Query: 480 PLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAMEL 539 P +Q LGERL+P +QAM P A KITGM R +V+EA+ + Sbjct: 552 PPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRLKVDEAVAV 611 Query: 540 IVAHGRENGA 549 + AH + A Sbjct: 612 LQAHQAKEAA 621 >PAB1_MOUSE P29341 mus musculus (mouse). polyadenylate-binding protein 1 (poly(a) binding protein 1) (pabp 1). 7/1998 Length = 636 Score = 87.8 bits (214), Expect = 8e-17 Identities = 25/70 (35%), Positives = 36/70 (50%) Query: 480 PLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAMEL 539 P +Q LGERL+P +QAM P+ A KITGM R++V+EA+ + Sbjct: 554 PPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAV 613 Query: 540 IVAHGRENGA 549 + AH + A Sbjct: 614 LQAHQAKEAA 623 >PABP_DROME P21187 drosophila melanogaster (fruit fly). polyadenylate-binding protein (poly(a) binding protein) (pabp). 2/1995 Length = 632 Score = 67.2 bits (161), Expect = 1e-10 Identities = 22/72 (30%), Positives = 30/72 (41%) Query: 478 PDPLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAM 537 +Q LGERLYP ++ M A KITGM +A+VEEA+ Sbjct: 560 NAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAV 619 Query: 538 ELIVAHGRENGA 549 ++ H A Sbjct: 620 AVLQVHRVTEPA 631 >PABP_SCHPO P31209 schizosaccharomyces pombe (fission yeast). polyadenylate-binding protein (poly(a) binding protein) (pabp). 7/1998 Length = 653 Score = 44.2 bits (102), Expect = 0.001 Identities = 18/62 (29%), Positives = 26/62 (41%) Query: 480 PLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAMEL 539 P + +Q LGE LYP+V + + KITGM RV EA+ + Sbjct: 581 PEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERVNEAIGV 640 Query: 540 IV 541 + Sbjct: 641 LQ 642 >PAB2_ARATH P42731 arabidopsis thaliana (mouse-ear cress). polyadenylate-binding protein 2 (poly(a) binding protein 2) (pabp 2). 12/1998 Length = 629 Score = 43.0 bits (99), Expect = 0.003 Identities = 18/63 (28%), Positives = 28/63 (43%) Query: 478 PDPLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAM 537 R LGE LYP V+ ++ A+K+TGM +A+V EAM Sbjct: 549 NATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 608 Query: 538 ELI 540 +++ Sbjct: 609 DVL 611 >PAB5_ARATH Q05196 arabidopsis thaliana (mouse-ear cress). polyadenylate-binding protein 5 (poly(a) binding protein 5) (pabp 5). 11/1995 Length = 668 Score = 42.6 bits (98), Expect = 0.003 Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 481 LPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAMELI 540 H + LG+ LYP V+ +PA +K+TGM +A+V EA++++ Sbjct: 587 PDKHPRMLGDHLYPLVEQQEPANPAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVL 646 >PABP_YEAST P04147 saccharomyces cerevisiae polyadenylate-binding protein, cytoplasmic and nuclear (pabp) (ars consensus binding protein acbp-67) (polyadenylate tail-binding protein). 2/1996 Length = 576 Score = 41.1 bits (94), Expect = 0.010 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 6/49 (12%) Query: 468 PASEGNPSDDPDP----LPAHRQALGERLYPRVQA--MQPAFASKITGM 510 P G P + D RQALGE+LY +V A A KITGM Sbjct: 484 PPQGGFPRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGM 532 >RNR_AQUAE O67834 aquifex aeolicus. ribonuclease r (ec 3.1.-.-) (rnase r) (vacb protein homolog). 5/2000 Length = 705 Score = 33.3 bits (74), Expect = 2.2 Identities = 17/92 (18%), Positives = 25/92 (26%), Gaps = 13/92 (14%) Query: 686 SAMDLAFAVDLCKEEGGGQ---VELIPNGVNIPVTPQNVYEYVRKY-AEHRMLVVAEQPL 741 L F +D K +EL P G YV + + E Sbjct: 243 LREQLCFTIDPEKAGDFDDAVAIELTPEGY--------YKLYVHIADVSYYVREGTETDK 294 Query: 742 HAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCG 773 A ++G P +L L E + Sbjct: 295 EAYKRGFTYYFPDRALHML-PEKLSAKLCSLR 325 >NIRA_EMENI P28348 emericella nidulans (aspergillus nidulans). nitrogen assimilation transcription factor nira. 4/1993 Length = 892 Score = 32.9 bits (73), Expect = 2.9 Identities = 22/95 (23%), Positives = 35/95 (36%) Query: 219 LAEEADSSKPGPSAHDVAAQLKSSLLAEIGLTESEGPPLTSFRPQCSFMGMVISHDMLLG 278 +A + S+ GP + ++ S A++ E+ P T RP + G V S Sbjct: 702 VASQYSSTPSGPVSVSAMRAVQRSFSAQLAHNEARQPEPTYLRPVSTSYGPVPSTQSAQE 761 Query: 279 RWRLSLELFGRVFMEDVGAEPGSILTELGGFEVKE 313 +W E R F S + L F+ E Sbjct: 762 QWYSPTEAQFRAFTAAHSMPTTSAQSPLTTFDTPE 796 >YK44_YEAST P36023 saccharomyces cerevisiae (baker's yeast). putative 101.8 kda transcriptional regulatory protein in las1-ccp1 intergenic region. 2/1995 Length = 863 Score = 31.3 bits (69), Expect = 8.4 Identities = 26/238 (10%), Positives = 59/238 (23%), Gaps = 45/238 (18%) Query: 600 KRGFYTPRP-GKNTEARLNCFRN----IGRILGLCLLQNELC----PITLNRHVIKVLLG 650 KR F+ + KN + + F I + L LL E+ + + K Sbjct: 523 KRNFHILKSLSKNEKETMRHFDFEMEWIIDLFSLSLLHGEMIFYEYDCNITK-FYK---- 577 Query: 651 RKVNWHDFAFFDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPN 710 ++ D + E S + + D++ + + I Sbjct: 578 ---SFQDLWDMVIHISEKCYNYFFNSDALEVDSLTKFYTNRIVEIVANKVLVIVPAFILR 634 Query: 711 GVN-IPVTPQNVY---EYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKN----------- 755 G + + E++ + + RK + Sbjct: 635 GDRFKTIQYADKKKMIEFLYGVSSVYFNEFGFEYYRCFRKMFTAKIAYKILNRSCEKDAW 694 Query: 756 -SLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVERMS 812 + + +L NG ++ + + F V++ Sbjct: 695 RIILKFLLNELKLEDNGDSYIDYNDMRLN------------DICPIILEFQETVQKYD 740 >SYQ_YEAST P13188 saccharomyces cerevisiae (baker's yeast). glutaminyl-trna synthetase (ec 6.1.1.18) (glutamine--trna ligase) (glnrs). 11/1997 Length = 809 Score = 31.3 bits (69), Expect = 8.4 Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 18/117 (15%) Query: 671 QLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPN-GVNIPVTPQNVYEYVRKYA 729 +LI+ + +D AF E ++ + N GV I +T V YV +Y Sbjct: 71 ELIVNGIINGDLKTSLQVDAAFKYVKANGEASTKMGMNENSGVGIEITEDQVRNYVMQYI 130 Query: 730 E----------HRMLVVAEQPLHAMRK-------GLLDVLPKNSLEDLTAEDFRLLV 769 + ++++ + +++ ++ + L+ L +D R L+ Sbjct: 131 QENKERILTERYKLVPGIFADVKNLKELKWADPRSFKPIIDQEVLKLLGPKDERDLI 187 Searching.................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 100K_RAT Q62671 rattus norvegicus (rat). 100 kda protein (ec... 1228 0.0 HYDP_DROME P51592 drosophila melanogaster (fruit fly). hyper... 702 0.0 PUB1_SCHPO Q92462 schizosaccharomyces pombe (fission yeast).... 340 5e-93 NED4_HUMAN P46934 homo sapiens (human). nedd-4 protein (ec 6... 339 1e-92 NED4_MOUSE P46935 mus musculus (mouse). nedd-4 protein (ec 6... 339 2e-92 RSP5_YEAST P39940 saccharomyces cerevisiae (baker's yeast). ... 330 1e-89 UE3A_HUMAN Q05086 homo sapiens (human). ubiquitin-protein li... 316 1e-85 UE3A_MOUSE O08759 mus musculus (mouse). ubiquitin-protein li... 306 1e-82 HUL4_YEAST P40985 saccharomyces cerevisiae (baker's yeast). ... 289 1e-77 TR12_HUMAN Q14669 homo sapiens (human). thyroid receptor int... 284 5e-76 URB1_RAT P51593 rattus norvegicus (rat). dna binding protein... 279 1e-74 Y032_HUMAN Q15034 homo sapiens (human). hypothetical protein... 274 4e-73 UFD4_YEAST P33202 saccharomyces cerevisiae (baker's yeast). ... 259 2e-68 HUL5_YEAST P53119 saccharomyces cerevisiae (baker's yeast). ... 257 8e-68 PABP_DROME P21187 drosophila melanogaster (fruit fly). polya... 88 6e-17 PAB1_HUMAN P11940 homo sapiens (human). polyadenylate-bindin... 87 1e-16 PABP_XENLA P20965 xenopus laevis (african clawed frog). poly... 86 2e-16 PAB1_MOUSE P29341 mus musculus (mouse). polyadenylate-bindin... 86 3e-16 Sequences not found previously or not previously below threshold: PAB2_ARATH P42731 arabidopsis thaliana (mouse-ear cress). po... 48 1e-04 PABP_SCHPO P31209 schizosaccharomyces pombe (fission yeast).... 45 7e-04 PAB5_ARATH Q05196 arabidopsis thaliana (mouse-ear cress). po... 44 0.001 PABP_YEAST P04147 saccharomyces cerevisiae polyadenylate-bin... 42 0.006 NIRA_EMENI P28348 emericella nidulans (aspergillus nidulans)... 33 2.9 RNR_AQUAE O67834 aquifex aeolicus. ribonuclease r (ec 3.1.-.... 32 3.7 >100K_RAT Q62671 rattus norvegicus (rat). 100 kda protein (ec 6.3.2.-). 7/1999 Length = 889 Score = 1228 bits (3143), Expect = 0.0 Identities = 765/889 (86%), Positives = 765/889 (86%) Query: 1 MMSARGDFLNYALSLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNQQTTLDT 60 MMSARGDFLNYALSLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNQQTTLDT Sbjct: 1 MMSARGDFLNYALSLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNQQTTLDT 60 Query: 61 PQXXXXXXXXXXXXGIXXXXXXXXXXXXTSQSATLNDKDDESLPAETGQNHPFFRRSDSM 120 PQ GI TSQSATLNDKDDESLPAETGQNHPFFRRSDSM Sbjct: 61 PQLERKRTRELLELGIDNEDSEHENDDDTSQSATLNDKDDESLPAETGQNHPFFRRSDSM 120 Query: 121 TFLGCIPPNPFEVPLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSAGSGKCLVEVT 180 TFLGCIPPNPFEVPLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSAGSGKCLVEVT Sbjct: 121 TFLGCIPPNPFEVPLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSAGSGKCLVEVT 180 Query: 181 MDRNCLEVLPTKMSYAANLKNVMNMQNRQKKAGEDQSMLAEEADSSKPGPSAHDVAAQLK 240 MDRNCLEVLPTKMSYAANLKNVMNMQNRQKKAGEDQSMLAEEADSSKPGPSAHDVAAQLK Sbjct: 181 MDRNCLEVLPTKMSYAANLKNVMNMQNRQKKAGEDQSMLAEEADSSKPGPSAHDVAAQLK 240 Query: 241 SSLLAEIGLTESEGPPLTSFRPQCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPG 300 SSLLAEIGLTESEGPPLTSFRPQCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPG Sbjct: 241 SSLLAEIGLTESEGPPLTSFRPQCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPG 300 Query: 301 SILTELGGFEVKESKFRREMEKLRNQQSRDLSLEVDRDRDLLIQQTMRQLNNHFGRRCAT 360 SILTELGGFEVKESKFRREMEKLRNQQSRDLSLEVDRDRDLLIQQTMRQLNNHFGRRCAT Sbjct: 301 SILTELGGFEVKESKFRREMEKLRNQQSRDLSLEVDRDRDLLIQQTMRQLNNHFGRRCAT 360 Query: 361 TPMAVHRVKVTFKDEPGEGSGVARSFYTAIAQAFLSNEKLPNLDCIQNANKGTHTSLMQX 420 TPMAVHRVKVTFKDEPGEGSGVARSFYTAIAQAFLSNEKLPNLDCIQNANKGTHTSLMQ Sbjct: 361 TPMAVHRVKVTFKDEPGEGSGVARSFYTAIAQAFLSNEKLPNLDCIQNANKGTHTSLMQR 420 Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLSIDTRPFRPASEGNPSDDPDP 480 QLSIDTRPFRPASEGNPSDDPDP Sbjct: 421 LRNRGERDREREREREMRRSSGLRAGSRRDRDRDFRRQLSIDTRPFRPASEGNPSDDPDP 480 Query: 481 LPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAMELI 540 LPAHRQALGERLYPRVQAMQPAFASKITGM RARVEEAMELI Sbjct: 481 LPAHRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELI 540 Query: 541 VAHGRENGAXXXXXXXXXXXXEKVQENRKRHGSSRSVVXXXXXXXXXXXXNAPLFYQPGK 600 VAHGRENGA EKVQENRKRHGSSRSVV NAPLFYQPGK Sbjct: 541 VAHGRENGADSILDLGLLDSSEKVQENRKRHGSSRSVVDMDLDDTDDGDDNAPLFYQPGK 600 Query: 601 RGFYTPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAF 660 RGFYTPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAF Sbjct: 601 RGFYTPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAF 660 Query: 661 FDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQN 720 FDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQN Sbjct: 661 FDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQN 720 Query: 721 VYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQML 780 VYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQML Sbjct: 721 VYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQML 780 Query: 781 ISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMP 840 ISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMP Sbjct: 781 ISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMP 840 Query: 841 SITIRPPDDQHLPTANTCISRLYVPXXXXXXXXXXXXXXXXXXXNFGFV 889 SITIRPPDDQHLPTANTCISRLYVP NFGFV Sbjct: 841 SITIRPPDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFGFV 889 >HYDP_DROME P51592 drosophila melanogaster (fruit fly). hyperplastic discs protein (hyd protein) (ec 6.3.2.-). 12/1998 Length = 2895 Score = 702 bits (1792), Expect = 0.0 Identities = 281/635 (44%), Positives = 374/635 (58%), Gaps = 34/635 (5%) Query: 263 QCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPGSILTELGGFEVKESKFRREMEK 322 Q +F G+ + +L + L+L+LFGR FM+DVG E GS+L EL GF VKE +FRR MEK Sbjct: 2287 QSNFSGIAPCNFLLSAK--LTLDLFGRPFMDDVGMEHGSVLPELRGFPVKEMRFRRHMEK 2344 Query: 323 LRNQQSRDLSL-EVDRDRDLLIQQTMRQLNNHFGR--RCATTPMAVHRVKVTFKDEPGEG 379 LRN Q RDL L +++R+R+ LI QT ++LN FG R P+ +RVKVTFKDEPGEG Sbjct: 2345 LRNGQQRDLVLCKLERNRESLIVQTFKELNTQFGNQSRRIQPPITFNRVKVTFKDEPGEG 2404 Query: 380 SGVARSFYTAIAQAFLSNEKLPNLDCIQNANKGTHTSLMQXXXXXXXXXXXXXXXXXXXX 439 SGVARSFYT+IA+A L++ K+PNL+ +Q H+ + Sbjct: 2405 SGVARSFYTSIAEALLASAKIPNLESVQVGTN--HSKYVVPFSSILRTTVSGSSRDQSTL 2462 Query: 440 XXXXXXXXXXXXXXXXXXQLSIDTRPFRPASEGN---PSDDPDPLPAHRQALGERLYPRV 496 L++D RP+ P + + P D L H Q +GERLYP++ Sbjct: 2463 QRRGSNSKILWRSARERKALNLDARPYTPPNSSDNATPESLNDHLSVHLQQIGERLYPKI 2522 Query: 497 QAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAMELIVAHGRENGAXXXXXXX 556 ++ A KITGM R +V EA+E+I + + Sbjct: 2523 HSINQTHAPKITGMLLEIPTPQLLSVISSDETLRQKVNEAIEIITFKQKSETSA------ 2576 Query: 557 XXXXXEKVQENRKRHGSSRSVVXXXXXXXXXXXXNAPLFYQPGKRGFYTPRPGKNTEARL 616 Q ++ + S VV N PLFY PGKRGFY PR G + R+ Sbjct: 2577 --------QSSQPKKSPSVVVVDPVDDD------NEPLFYSPGKRGFYIPRQGFASFERI 2622 Query: 617 NCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILAS 676 N FRNIGR++GLCLLQNEL P+ L RHV+K +L RK+ +HD AFFDP +YES RQ+I + Sbjct: 2623 NAFRNIGRLIGLCLLQNELLPLFLQRHVLKYILRRKIKFHDLAFFDPALYESFRQIIQNA 2682 Query: 677 QSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQNVYEYVRKYAEHRM-LV 735 Q+ + + + M+L F +DL KEEG G ELIP G ++ V+ + +Y ++ + Sbjct: 2683 QTKEGEETINRMELCFVIDLMKEEGCGNRELIPGGRDV-VSHRVIYSSTSDAIQNIDXIK 2741 Query: 736 VAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAE 795 E+ L A++ G+ DVLP NS+ +LTAED RLL+NG G++NV LIS+T+FNDES E + Sbjct: 2742 SQEKALEALKDGVFDVLPDNSMINLTAEDLRLLLNGVGDINVSTLISYTTFNDESSEGPD 2801 Query: 796 KLL-QFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPT 854 K L +FK+WFWSIVE+M++ ERQ LVYFWT SP+LPASEEGFQP+PS+TIRP DD HLPT Sbjct: 2802 K-LXKFKKWFWSIVEKMNIMERQHLVYFWTGSPALPASEEGFQPLPSVTIRPADDSHLPT 2860 Query: 855 ANTCISRLYVPXXXXXXXXXXXXXXXXXXXNFGFV 889 ANTCISRLY+P NFGFV Sbjct: 2861 ANTCISRLYIPLYSSKSILRSKMLMAIKSKNFGFV 2895 Score = 254 bits (643), Expect = 4e-67 Identities = 69/209 (33%), Positives = 107/209 (51%), Gaps = 26/209 (12%) Query: 3 SARGDFLNYALSLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNQQTTLDTPQ 62 ++R DF Y LSLMRSH EH D LPVLD+ +L+H+AYV A +Y+++ N D Sbjct: 1913 NSRRDFFTYCLSLMRSHTSEHRDALPVLDITALRHIAYVLDAFVYYMR--NDSGFYDKQD 1970 Query: 63 XXXXXXXXXXXXGIXXXXXXXXXXXXTSQSATLNDKDDE------SLPA--ETGQNHPFF 114 I + A L + + + S+P+ + + H FF Sbjct: 1971 SISGR--------INNLSPMTESYDTDDELANLEEFNADVQMSASSMPSGSQGTRRHAFF 2022 Query: 115 RRSDSMTFLGCIPPNPFEVPLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSAGSGK 174 RS+S LGC P FE+PL A+PLAD+PHLLQPN+++++LF + +++ SG Sbjct: 2023 ARSESTLTLGCSAPEGFELPLDMAMPLADKPHLLQPNSKRQELFANLPLLVTTNANNSG- 2081 Query: 175 CLVEVTMD---RNCLEVLPTKMSYAANLK 200 T D + + PT++ ++ +LK Sbjct: 2082 ----ATNDGDGASIFDYTPTRLGFSNSLK 2106 >PUB1_SCHPO Q92462 schizosaccharomyces pombe (fission yeast). ubiquitin--protein ligase pub1 (ec 6.3.2.-). 12/1998 Length = 767 Score = 340 bits (864), Expect = 5e-93 Identities = 69/265 (26%), Positives = 115/265 (43%), Gaps = 18/265 (6%) Query: 606 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVM 665 P G N E LN F+ IGR++GL + K++L +KV D D Sbjct: 491 PHSGINPE-HLNYFKFIGRVIGLAIFHRRFVDAFFVVSFYKMILQKKVTLQDMESMDAEY 549 Query: 666 YESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQNVYEYV 725 Y SL ++ + D FS D F + ++L PNG NI VT +N EYV Sbjct: 550 YRSLVWILDNDITGVLDLTFSVEDNCFGEVVT-------IDLKPNGRNIEVTEENKREYV 602 Query: 726 RKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTS 785 R+ E+ +A +G +++P+ + + LL+ G E++++ T Sbjct: 603 DLVTVWRIQKRIEEQFNAFHEGFSELIPQELINVFDERELELLIGGISEIDMEDWKKHTD 662 Query: 786 FNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASE----EGFQPMPS 841 + S + Q +WFW +++ S ++ L+ F T + +P + +G Sbjct: 663 YRSYSEND-----QIIKWFWELMDEWSNEKKSRLLQFTTGTSRIPVNGFKDLQGSDGPRK 717 Query: 842 ITIRPP-DDQHLPTANTCISRLYVP 865 TI + LP A+TC +RL +P Sbjct: 718 FTIEKAGEPNKLPKAHTCFNRLDLP 742 >NED4_HUMAN P46934 homo sapiens (human). nedd-4 protein (ec 6.3.2.-) (kiaa0093) (fragment). 7/1999 Length = 927 Score = 339 bits (860), Expect = 1e-92 Identities = 72/268 (26%), Positives = 119/268 (43%), Gaps = 23/268 (8%) Query: 606 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVM 665 P G E L+ F+ IGR+ G+ + +L R K++L + + HD D Sbjct: 649 PNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLHKPITLHDMESVDSEY 708 Query: 666 YESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQV---ELIPNGVNIPVTPQNVY 722 Y SLR ++ + +DL F +D EE GQ EL G I VT +N Sbjct: 709 YNSLRWILENDPTE--------LDLRFIID---EELFGQTHQHELKNGGSEIVVTNKNKK 757 Query: 723 EYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLIS 782 EY+ + R + ++ + A ++G +++P++ ++ + LL+ G G+V+V Sbjct: 758 EYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVNDWRE 817 Query: 783 FTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLP----ASEEGFQP 838 T + + N Q +WFW V M +R L+ F T + +P A G Sbjct: 818 HTKYKNGYSANH----QVIQWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAELYGSNG 873 Query: 839 MPSITIRP-PDDQHLPTANTCISRLYVP 865 S T+ + LP A+TC +RL +P Sbjct: 874 PQSFTVEQWGTPEKLPRAHTCFNRLDLP 901 >NED4_MOUSE P46935 mus musculus (mouse). nedd-4 protein (ec 6.3.2.-) (fragment). 11/1997 Length = 957 Score = 339 bits (859), Expect = 2e-92 Identities = 72/268 (26%), Positives = 117/268 (42%), Gaps = 23/268 (8%) Query: 606 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVM 665 P G E L+ F+ IGR+ G+ + +L R K++L + + HD D Sbjct: 679 PNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLQKLITLHDMESVDSEY 738 Query: 666 YESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQV---ELIPNGVNIPVTPQNVY 722 Y SLR ++ + +DL F +D EE GQ EL G I VT +N Sbjct: 739 YSSLRWILENDPTE--------LDLRFIID---EELFGQTHQHELKTGGSEIVVTNKNKK 787 Query: 723 EYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLIS 782 EY+ + R + ++ + A ++G +++P++ ++ + LL+ G G+V+V Sbjct: 788 EYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVNDWRE 847 Query: 783 FTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLP----ASEEGFQP 838 T + + N Q WFW V M +R L+ F T + +P A G Sbjct: 848 HTKYKNGYSMNH----QVIHWFWKAVWMMDSEKRIRLLQFVTGTSRVPMNGFAELYGSNG 903 Query: 839 MPSITIRP-PDDQHLPTANTCISRLYVP 865 S T+ LP A+TC +RL +P Sbjct: 904 PQSFTVEQWGTPDKLPRAHTCFNRLDLP 931 >RSP5_YEAST P39940 saccharomyces cerevisiae (baker's yeast). ubiquitin--protein ligase rsp5 (ec 6.3.2.-). 7/1999 Length = 809 Score = 330 bits (836), Expect = 1e-89 Identities = 69/265 (26%), Positives = 116/265 (43%), Gaps = 18/265 (6%) Query: 606 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVM 665 P G N E LN F+ IGR++GL + + K++L +KV D D + Sbjct: 533 PNSGINPE-HLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEV 591 Query: 666 YESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQNVYEYV 725 Y SL ++ S D FSA D F + V+L P+G NI VT N EYV Sbjct: 592 YNSLNWMLENSIDGVLDLTFSADDERFGEVVT-------VDLKPDGRNIEVTDGNKKEYV 644 Query: 726 RKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTS 785 Y + R++ ++ A G +++P++ + + LL+ G E++++ T Sbjct: 645 ELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHTD 704 Query: 786 FNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASE----EGFQPMPS 841 + + + +WFW V +R L+ F T + +P + +G Sbjct: 705 YRGYQESD-----EVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRR 759 Query: 842 ITIRPPDD-QHLPTANTCISRLYVP 865 TI + Q LP ++TC +R+ +P Sbjct: 760 FTIEKAGEVQQLPKSHTCFNRVDLP 784 >UE3A_HUMAN Q05086 homo sapiens (human). ubiquitin-protein ligase e3a (ec 6.3.2.-) (oncogenic protein- associated protein e6-ap) (human papillomavirus e6-associated protein). 5/2000 Length = 875 Score = 316 bits (801), Expect = 1e-85 Identities = 67/249 (26%), Positives = 116/249 (45%), Gaps = 12/249 (4%) Query: 619 FRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQS 678 F IG +LGL + N + + V + L+G+K + D PV+Y+SL+ L+ + Sbjct: 612 FTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGN 671 Query: 679 SDADAVFSAMDLAFAVDLCKEEGGGQV-ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVA 737 + D M + F + G + +L NG IP+T +N E+V Y+++ + Sbjct: 672 VEDD-----MMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSV 726 Query: 738 EQPLHAMRKGLLDVLPKNSLED-LTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEK 796 E+ A R+G V ++ L+ E+ LL+ G ++ Q L T + + G + Sbjct: 727 EKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEY--DGGYTRDS 784 Query: 797 LLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTAN 856 +L R FW IV + +++ + F T + P G M I PD + LPT++ Sbjct: 785 VL--IREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKM-IIAKNGPDTERLPTSH 841 Query: 857 TCISRLYVP 865 TC + L +P Sbjct: 842 TCFNVLLLP 850 >UE3A_MOUSE O08759 mus musculus (mouse). ubiquitin-protein ligase e3a (ec 6.3.2.-) (oncogenic protein- associated protein e6-ap). 5/2000 Length = 885 Score = 306 bits (775), Expect = 1e-82 Identities = 67/249 (26%), Positives = 114/249 (44%), Gaps = 13/249 (5%) Query: 619 FRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQS 678 F IG + GL + N + + V + L+G+K + D PV+Y+SL+ L+ S Sbjct: 623 FTLIGIL-GLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGS 681 Query: 679 SDADAVFSAMDLAFAVDLCKEEGGGQV-ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVA 737 + D M + F + G + +L NG IP+T +N E+V Y+++ + Sbjct: 682 VEDD-----MMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVISYSDYILNKSV 736 Query: 738 EQPLHAMRKGLLDVLPKNSLED-LTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEK 796 E+ A R+G V ++ L+ E+ LL+ G ++ Q L T + + G E Sbjct: 737 EKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEY--DGGYTRES 794 Query: 797 LLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTAN 856 + R FW IV + +++ + F T + P G M I PD + LPT++ Sbjct: 795 V--VIREFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGLGKLKM-IIAKNGPDTERLPTSH 851 Query: 857 TCISRLYVP 865 TC + L +P Sbjct: 852 TCFNVLLLP 860 >HUL4_YEAST P40985 saccharomyces cerevisiae (baker's yeast). probable ubiquitin--protein ligase hul4 (ec 6.3.2.-). 5/2000 Length = 892 Score = 289 bits (733), Expect = 1e-77 Identities = 58/271 (21%), Positives = 116/271 (42%), Gaps = 16/271 (5%) Query: 604 YTPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDP 663 + GKN++ L + G ++GL + + + + + + K L +++ D++ P Sbjct: 602 FDKSKGKNSQLEL--YYLFGVVMGLAIFNSTILDLQFPKALYKKLCSEPLSFEDYSELFP 659 Query: 664 VMYESLRQLILASQSSDADAVFSAMDLAFAV------DLCKEEGGGQVELIPNGVNIPVT 717 +L +++ ++ + D + + D + VEL NG N+P+T Sbjct: 660 ETSRNLIKMLNYTEDNFEDVFSLTFETTYRNNNWILNDSKSSKEYVTVELCENGRNVPIT 719 Query: 718 PQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPK-NSLEDLTAEDFRLLVNGCGE-- 774 N +E+V K+ E + E + G V + NS++ +E+ LV G E Sbjct: 720 QSNKHEFVMKWVEFYLEKSIEPQYNKFVSGFKRVFAECNSIKLFNSEELERLVCGDEEQT 779 Query: 775 -VNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASE 833 + + L S T + +++ + WFW I+E ++ L+ F T+S +PA+ Sbjct: 780 KFDFKSLRSVTKYVGGFSDDSRAVC----WFWEIIESWDYPLQKKLLQFVTASDRIPATG 835 Query: 834 EGFQPMPSITIRPPDDQHLPTANTCISRLYV 864 P + D LP A+TC + + + Sbjct: 836 ISTIPFKISLLGSHDSDDLPLAHTCFNEICL 866 >TR12_HUMAN Q14669 homo sapiens (human). thyroid receptor interacting protein 12 (trip12) (kiaa0045). 12/1998 Length = 1992 Score = 284 bits (719), Expect = 5e-76 Identities = 58/286 (20%), Positives = 109/286 (37%), Gaps = 28/286 (9%) Query: 605 TPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNW--HDFAFFD 662 T +P + ++ FR +G+++ ++ L + L K +L ++ + HD D Sbjct: 1684 TAKPAHIAKVKMK-FRFLGKLMAKAIMDFRLVDLPLGLPFYKWMLRQETSLTSHDLFDID 1742 Query: 663 PVMYES---LRQLILASQSSDADAVFSAMDLAFAVDL-----CKEE---------GGGQV 705 PV+ S L ++ + + D + L +A++ C E G + Sbjct: 1743 PVVARSVYHLEDIVRQKKRLEQDKSQTKESLQYALETLTMNGCSVEDLGLDFTLPGFPNI 1802 Query: 706 ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDF 765 EL G +IPVT N+ EY+R + + + R G V P + L+ E+ Sbjct: 1803 ELKKGGKDIPVTIHNLEEYLRLVIFWALNEGVSRQFDSFRDGFESVFPLSHLQYFYPEEL 1862 Query: 766 RLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTS 825 L+ G + G + + ++ + I+ +++ + F T Sbjct: 1863 DQLLCGSKADTWDAKTLMECCRPDHGYTHDS--RAVKFLFEILSSFDNEQQRLFLQFVTG 1920 Query: 826 SPSLPASEEGFQPMPSITIRP------PDDQHLPTANTCISRLYVP 865 SP LP P +R D LP+ TC++ L +P Sbjct: 1921 SPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLP 1966 >URB1_RAT P51593 rattus norvegicus (rat). dna binding protein ure-b1 (ec 6.3.2.-). 10/1996 Length = 310 Score = 279 bits (707), Expect = 1e-74 Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 19/250 (7%) Query: 623 GRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQSSDAD 682 GR + ++ L R K +LG+ V + D D Y+ L L+ D Sbjct: 45 GRYVAKAVMTTALLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLEN------D 98 Query: 683 AVFSAMDLAFAVDLCKEEGGGQV-ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPL 741 DL F+ ++ +E G +V +L PNG NI VT +N EYV + RM + L Sbjct: 99 VSTLGYDLTFSTEV-QEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQL 157 Query: 742 HAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFK 801 A +G +++PK + T ++ LL G +++ L S T ++ + + Sbjct: 158 AAFLEGFYEIIPKRLISIFTEQELELLYTGLPTIDIDDLKSNTEYHKYQSNSIQ-----I 212 Query: 802 RWFWSIVERMSMTERQDLVYFWTSSPSLP----ASEEGFQPMPSITIRPPD--DQHLPTA 855 +WFW + +R + F T + +P A+ EG + I D LP+A Sbjct: 213 QWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSA 272 Query: 856 NTCISRLYVP 865 +TC ++L +P Sbjct: 273 HTCFNQLDLP 282 >Y032_HUMAN Q15034 homo sapiens (human). hypothetical protein kiaa0032. 5/2000 Length = 1050 Score = 274 bits (694), Expect = 4e-73 Identities = 58/256 (22%), Positives = 96/256 (36%), Gaps = 15/256 (5%) Query: 613 EARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQL 672 N F IG GL + + + + + K LL K D P SL++L Sbjct: 782 FVEHNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQEL 841 Query: 673 ILASQSSDADAVFSAMDLAFAVDLCKEEGGG--QVELIPNGVNIPVTPQNVYEYVRKYAE 730 + D + F L F + C+E G Q +LIP G N+ V N E+V Y Sbjct: 842 LDY-PGEDVEETFC---LNFTI--CRESYGVIEQKKLIPGGDNVTVCKDNRQEFVDAYVN 895 Query: 731 HRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDES 790 + + + A G L V LE + R ++ G N + L + + Sbjct: 896 YVFQISVHEWYTAFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWEELEETAIYKGDY 955 Query: 791 GENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMPS-ITIRPPDD 849 + + FW + +++ + F T S +P G + I + Sbjct: 956 SATHPTV----KLFWETFHEFPLEKKKKFLLFLTGSDRIPI--YGMASLQIVIQSTASGE 1009 Query: 850 QHLPTANTCISRLYVP 865 ++LP A+TC + L +P Sbjct: 1010 EYLPVAHTCYNLLDLP 1025 >UFD4_YEAST P33202 saccharomyces cerevisiae (baker's yeast). ubiquitin fusion degradation protein 4 (ub fusion protein 4). 11/1997 Length = 1483 Score = 259 bits (655), Expect = 2e-68 Identities = 60/277 (21%), Positives = 109/277 (38%), Gaps = 29/277 (10%) Query: 607 RPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLG------------RKVN 654 P N E + F +G + LL N + ++ ++L + Sbjct: 1192 NPFSNNEKVIELFGYLGTFVARSLLDNRILDFRFSKVFFELLHRMSTPNVTTVPSDVETC 1251 Query: 655 WHDFAFFDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNI 714 DP++ +SL+ ++ D + ++ L F V G +ELIP G N Sbjct: 1252 LLMIELVDPLLAKSLKYIVAN---KDDNMTLESLSLTFTVP-----GNDDIELIPGGCNK 1303 Query: 715 PVTPQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGE 774 + NV EY+ + + E+ L A +G V + L ++ + + G E Sbjct: 1304 SLNSSNVEEYIHGVIDQILGKGIEKQLKAFIEGFSKVFSYERMLILFPDEL-VDIFGRVE 1362 Query: 775 VNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASE- 833 + M +T+ N E G + + F SI+ ER+ + F T SP LP Sbjct: 1363 EDWSMATLYTNLNAEHGYTMDSSI--IHDFISIISAFGKHERRLFLQFLTGSPKLPIGGF 1420 Query: 834 EGFQPMPSITIRPPD-----DQHLPTANTCISRLYVP 865 + P ++ ++ + D++LP+ TC + L +P Sbjct: 1421 KSLNPKFTVVLKHAEDGLTADEYLPSVMTCANYLKLP 1457 >HUL5_YEAST P53119 saccharomyces cerevisiae (baker's yeast). probable ubiquitin--protein ligase hul5 (ec 6.3.2.-). 5/2000 Length = 910 Score = 257 bits (649), Expect = 8e-68 Identities = 68/259 (26%), Positives = 125/259 (48%), Gaps = 21/259 (8%) Query: 615 RLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLL----GRKVNWHDFAFFDPVMYESLR 670 +L +G+++G CL ++ L ++ +K LL G ++ D +D V+Y +L Sbjct: 640 KLKYIWFLGKVVGKCLYEHVLIDVSFADFFLKKLLNYSNGFLSSFSDLGSYDSVLYNNLI 699 Query: 671 QLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQNVYEYVRKYAE 730 +L+ ++D ++DL F +D E V+LIPNG VT NV YV K + Sbjct: 700 KLLN--MTTDE---IKSLDLTFEIDE-PESSAKVVDLIPNGSKTYVTKDNVLLYVTKVTD 753 Query: 731 HRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCG-EVNVQMLISFTSFNDE 789 +++ +P+ A GL ++ + +E + + ++L++G +++ L S T + Sbjct: 754 YKLNKRCFKPVSAFHGGLSVIIAPHWMEMFNSIELQMLISGERDNIDLDDLKSNTEYGGY 813 Query: 790 SGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPM-PSITIRPPD 848 E+ Q FW ++ E+ + + F TS P P +GF+ + P IR Sbjct: 814 KEED-----QTIVDFWEVLNEFKFEEKLNFLKFVTSVPQAP--LQGFKALDPKFGIRNAG 866 Query: 849 DQ--HLPTANTCISRLYVP 865 + LPTA+TC++ L +P Sbjct: 867 TEKYRLPTASTCVNLLKLP 885 >PABP_DROME P21187 drosophila melanogaster (fruit fly). polyadenylate-binding protein (poly(a) binding protein) (pabp). 2/1995 Length = 632 Score = 88.2 bits (215), Expect = 6e-17 Identities = 22/72 (30%), Positives = 30/72 (41%) Query: 478 PDPLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAM 537 +Q LGERLYP ++ M A KITGM +A+VEEA+ Sbjct: 560 NAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAV 619 Query: 538 ELIVAHGRENGA 549 ++ H A Sbjct: 620 AVLQVHRVTEPA 631 >PAB1_HUMAN P11940 homo sapiens (human). polyadenylate-binding protein 1 (poly(a) binding protein 1) (pabp 1). 7/1998 Length = 636 Score = 87.4 bits (213), Expect = 1e-16 Identities = 25/71 (35%), Positives = 35/71 (49%) Query: 479 DPLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAME 538 P +Q LGERL+P +QAM P A KITGM R++V+EA+ Sbjct: 553 APPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVA 612 Query: 539 LIVAHGRENGA 549 ++ AH + A Sbjct: 613 VLQAHQAKEAA 623 >PABP_XENLA P20965 xenopus laevis (african clawed frog). polyadenylate-binding protein (poly(a) binding protein) (pabp). 7/1998 Length = 633 Score = 86.2 bits (210), Expect = 2e-16 Identities = 25/71 (35%), Positives = 34/71 (47%) Query: 479 DPLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAME 538 P +Q LGERL+P +QAM P A KITGM R +V+EA+ Sbjct: 551 APPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRLKVDEAVA 610 Query: 539 LIVAHGRENGA 549 ++ AH + A Sbjct: 611 VLQAHQAKEAA 621 >PAB1_MOUSE P29341 mus musculus (mouse). polyadenylate-binding protein 1 (poly(a) binding protein 1) (pabp 1). 7/1998 Length = 636 Score = 85.9 bits (209), Expect = 3e-16 Identities = 25/71 (35%), Positives = 36/71 (50%) Query: 479 DPLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAME 538 P +Q LGERL+P +QAM P+ A KITGM R++V+EA+ Sbjct: 553 APPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVA 612 Query: 539 LIVAHGRENGA 549 ++ AH + A Sbjct: 613 VLQAHQAKEAA 623 >PAB2_ARATH P42731 arabidopsis thaliana (mouse-ear cress). polyadenylate-binding protein 2 (poly(a) binding protein 2) (pabp 2). 12/1998 Length = 629 Score = 47.7 bits (111), Expect = 1e-04 Identities = 18/63 (28%), Positives = 28/63 (43%) Query: 478 PDPLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAM 537 R LGE LYP V+ ++ A+K+TGM +A+V EAM Sbjct: 549 NATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 608 Query: 538 ELI 540 +++ Sbjct: 609 DVL 611 >PABP_SCHPO P31209 schizosaccharomyces pombe (fission yeast). polyadenylate-binding protein (poly(a) binding protein) (pabp). 7/1998 Length = 653 Score = 45.0 bits (104), Expect = 7e-04 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 6/80 (7%) Query: 468 PASEGNPSDDPD------PLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXX 521 PA G P P + +Q LGE LYP+V + + KITGM Sbjct: 563 PAVPGMPERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLE 622 Query: 522 XXXXXXXXRARVEEAMELIV 541 RV EA+ ++ Sbjct: 623 LLEDDSALNERVNEAIGVLQ 642 >PAB5_ARATH Q05196 arabidopsis thaliana (mouse-ear cress). polyadenylate-binding protein 5 (poly(a) binding protein 5) (pabp 5). 11/1995 Length = 668 Score = 43.8 bits (101), Expect = 0.001 Identities = 17/62 (27%), Positives = 29/62 (46%) Query: 479 DPLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAME 538 H + LG+ LYP V+ +PA +K+TGM +A+V EA++ Sbjct: 585 ASPDKHPRMLGDHLYPLVEQQEPANPAKVTGMLLEMDQAEILHLLESPEALKAKVSEALD 644 Query: 539 LI 540 ++ Sbjct: 645 VL 646 >PABP_YEAST P04147 saccharomyces cerevisiae polyadenylate-binding protein, cytoplasmic and nuclear (pabp) (ars consensus binding protein acbp-67) (polyadenylate tail-binding protein). 2/1996 Length = 576 Score = 41.8 bits (96), Expect = 0.006 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 6/49 (12%) Query: 468 PASEGNPSDDPDP----LPAHRQALGERLYPRVQA--MQPAFASKITGM 510 P G P + D RQALGE+LY +V A A KITGM Sbjct: 484 PPQGGFPRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGM 532 >NIRA_EMENI P28348 emericella nidulans (aspergillus nidulans). nitrogen assimilation transcription factor nira. 4/1993 Length = 892 Score = 32.9 bits (73), Expect = 2.9 Identities = 22/95 (23%), Positives = 35/95 (36%) Query: 219 LAEEADSSKPGPSAHDVAAQLKSSLLAEIGLTESEGPPLTSFRPQCSFMGMVISHDMLLG 278 +A + S+ GP + ++ S A++ E+ P T RP + G V S Sbjct: 702 VASQYSSTPSGPVSVSAMRAVQRSFSAQLAHNEARQPEPTYLRPVSTSYGPVPSTQSAQE 761 Query: 279 RWRLSLELFGRVFMEDVGAEPGSILTELGGFEVKE 313 +W E R F S + L F+ E Sbjct: 762 QWYSPTEAQFRAFTAAHSMPTTSAQSPLTTFDTPE 796 >RNR_AQUAE O67834 aquifex aeolicus. ribonuclease r (ec 3.1.-.-) (rnase r) (vacb protein homolog). 5/2000 Length = 705 Score = 32.5 bits (72), Expect = 3.7 Identities = 17/92 (18%), Positives = 25/92 (26%), Gaps = 13/92 (14%) Query: 686 SAMDLAFAVDLCKEEGGGQ---VELIPNGVNIPVTPQNVYEYVRKY-AEHRMLVVAEQPL 741 L F +D K +EL P G YV + + E Sbjct: 243 LREQLCFTIDPEKAGDFDDAVAIELTPEGY--------YKLYVHIADVSYYVREGTETDK 294 Query: 742 HAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCG 773 A ++G P +L L E + Sbjct: 295 EAYKRGFTYYFPDRALHML-PEKLSAKLCSLR 325 Searching.................................................done Results from round 4 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 100K_RAT Q62671 rattus norvegicus (rat). 100 kda protein (ec... 1225 0.0 HYDP_DROME P51592 drosophila melanogaster (fruit fly). hyper... 696 0.0 PUB1_SCHPO Q92462 schizosaccharomyces pombe (fission yeast).... 341 3e-93 NED4_HUMAN P46934 homo sapiens (human). nedd-4 protein (ec 6... 340 9e-93 NED4_MOUSE P46935 mus musculus (mouse). nedd-4 protein (ec 6... 339 1e-92 RSP5_YEAST P39940 saccharomyces cerevisiae (baker's yeast). ... 331 4e-90 UE3A_HUMAN Q05086 homo sapiens (human). ubiquitin-protein li... 316 9e-86 UE3A_MOUSE O08759 mus musculus (mouse). ubiquitin-protein li... 307 8e-83 HUL4_YEAST P40985 saccharomyces cerevisiae (baker's yeast). ... 290 7e-78 TR12_HUMAN Q14669 homo sapiens (human). thyroid receptor int... 284 4e-76 URB1_RAT P51593 rattus norvegicus (rat). dna binding protein... 280 1e-74 Y032_HUMAN Q15034 homo sapiens (human). hypothetical protein... 275 3e-73 UFD4_YEAST P33202 saccharomyces cerevisiae (baker's yeast). ... 259 1e-68 HUL5_YEAST P53119 saccharomyces cerevisiae (baker's yeast). ... 258 4e-68 PAB1_HUMAN P11940 homo sapiens (human). polyadenylate-bindin... 87 2e-16 PABP_DROME P21187 drosophila melanogaster (fruit fly). polya... 86 3e-16 PABP_XENLA P20965 xenopus laevis (african clawed frog). poly... 85 4e-16 PAB1_MOUSE P29341 mus musculus (mouse). polyadenylate-bindin... 85 4e-16 PABP_SCHPO P31209 schizosaccharomyces pombe (fission yeast).... 78 7e-14 PAB2_ARATH P42731 arabidopsis thaliana (mouse-ear cress). po... 66 3e-10 Sequences not found previously or not previously below threshold: PAB5_ARATH Q05196 arabidopsis thaliana (mouse-ear cress). po... 51 9e-06 PABP_YEAST P04147 saccharomyces cerevisiae polyadenylate-bin... 45 5e-04 RNR_AQUAE O67834 aquifex aeolicus. ribonuclease r (ec 3.1.-.... 33 2.9 NIRA_EMENI P28348 emericella nidulans (aspergillus nidulans)... 33 2.9 >100K_RAT Q62671 rattus norvegicus (rat). 100 kda protein (ec 6.3.2.-). 7/1999 Length = 889 Score = 1225 bits (3136), Expect = 0.0 Identities = 765/889 (86%), Positives = 765/889 (86%) Query: 1 MMSARGDFLNYALSLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNQQTTLDT 60 MMSARGDFLNYALSLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNQQTTLDT Sbjct: 1 MMSARGDFLNYALSLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNQQTTLDT 60 Query: 61 PQXXXXXXXXXXXXGIXXXXXXXXXXXXTSQSATLNDKDDESLPAETGQNHPFFRRSDSM 120 PQ GI TSQSATLNDKDDESLPAETGQNHPFFRRSDSM Sbjct: 61 PQLERKRTRELLELGIDNEDSEHENDDDTSQSATLNDKDDESLPAETGQNHPFFRRSDSM 120 Query: 121 TFLGCIPPNPFEVPLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSAGSGKCLVEVT 180 TFLGCIPPNPFEVPLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSAGSGKCLVEVT Sbjct: 121 TFLGCIPPNPFEVPLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSAGSGKCLVEVT 180 Query: 181 MDRNCLEVLPTKMSYAANLKNVMNMQNRQKKAGEDQSMLAEEADSSKPGPSAHDVAAQLK 240 MDRNCLEVLPTKMSYAANLKNVMNMQNRQKKAGEDQSMLAEEADSSKPGPSAHDVAAQLK Sbjct: 181 MDRNCLEVLPTKMSYAANLKNVMNMQNRQKKAGEDQSMLAEEADSSKPGPSAHDVAAQLK 240 Query: 241 SSLLAEIGLTESEGPPLTSFRPQCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPG 300 SSLLAEIGLTESEGPPLTSFRPQCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPG Sbjct: 241 SSLLAEIGLTESEGPPLTSFRPQCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPG 300 Query: 301 SILTELGGFEVKESKFRREMEKLRNQQSRDLSLEVDRDRDLLIQQTMRQLNNHFGRRCAT 360 SILTELGGFEVKESKFRREMEKLRNQQSRDLSLEVDRDRDLLIQQTMRQLNNHFGRRCAT Sbjct: 301 SILTELGGFEVKESKFRREMEKLRNQQSRDLSLEVDRDRDLLIQQTMRQLNNHFGRRCAT 360 Query: 361 TPMAVHRVKVTFKDEPGEGSGVARSFYTAIAQAFLSNEKLPNLDCIQNANKGTHTSLMQX 420 TPMAVHRVKVTFKDEPGEGSGVARSFYTAIAQAFLSNEKLPNLDCIQNANKGTHTSLMQ Sbjct: 361 TPMAVHRVKVTFKDEPGEGSGVARSFYTAIAQAFLSNEKLPNLDCIQNANKGTHTSLMQR 420 Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLSIDTRPFRPASEGNPSDDPDP 480 QLSIDTRPFRPASEGNPSDDPDP Sbjct: 421 LRNRGERDREREREREMRRSSGLRAGSRRDRDRDFRRQLSIDTRPFRPASEGNPSDDPDP 480 Query: 481 LPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAMELI 540 LPAHRQALGERLYPRVQAMQPAFASKITGM RARVEEAMELI Sbjct: 481 LPAHRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELI 540 Query: 541 VAHGRENGAXXXXXXXXXXXXEKVQENRKRHGSSRSVVXXXXXXXXXXXXNAPLFYQPGK 600 VAHGRENGA EKVQENRKRHGSSRSVV NAPLFYQPGK Sbjct: 541 VAHGRENGADSILDLGLLDSSEKVQENRKRHGSSRSVVDMDLDDTDDGDDNAPLFYQPGK 600 Query: 601 RGFYTPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAF 660 RGFYTPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAF Sbjct: 601 RGFYTPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAF 660 Query: 661 FDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQN 720 FDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQN Sbjct: 661 FDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQN 720 Query: 721 VYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQML 780 VYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQML Sbjct: 721 VYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQML 780 Query: 781 ISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMP 840 ISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMP Sbjct: 781 ISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMP 840 Query: 841 SITIRPPDDQHLPTANTCISRLYVPXXXXXXXXXXXXXXXXXXXNFGFV 889 SITIRPPDDQHLPTANTCISRLYVP NFGFV Sbjct: 841 SITIRPPDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFGFV 889 >HYDP_DROME P51592 drosophila melanogaster (fruit fly). hyperplastic discs protein (hyd protein) (ec 6.3.2.-). 12/1998 Length = 2895 Score = 696 bits (1776), Expect = 0.0 Identities = 281/635 (44%), Positives = 374/635 (58%), Gaps = 34/635 (5%) Query: 263 QCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPGSILTELGGFEVKESKFRREMEK 322 Q +F G+ + +L + L+L+LFGR FM+DVG E GS+L EL GF VKE +FRR MEK Sbjct: 2287 QSNFSGIAPCNFLLSAK--LTLDLFGRPFMDDVGMEHGSVLPELRGFPVKEMRFRRHMEK 2344 Query: 323 LRNQQSRDLSL-EVDRDRDLLIQQTMRQLNNHFGR--RCATTPMAVHRVKVTFKDEPGEG 379 LRN Q RDL L +++R+R+ LI QT ++LN FG R P+ +RVKVTFKDEPGEG Sbjct: 2345 LRNGQQRDLVLCKLERNRESLIVQTFKELNTQFGNQSRRIQPPITFNRVKVTFKDEPGEG 2404 Query: 380 SGVARSFYTAIAQAFLSNEKLPNLDCIQNANKGTHTSLMQXXXXXXXXXXXXXXXXXXXX 439 SGVARSFYT+IA+A L++ K+PNL+ +Q H+ + Sbjct: 2405 SGVARSFYTSIAEALLASAKIPNLESVQVGTN--HSKYVVPFSSILRTTVSGSSRDQSTL 2462 Query: 440 XXXXXXXXXXXXXXXXXXQLSIDTRPFRPASEGN---PSDDPDPLPAHRQALGERLYPRV 496 L++D RP+ P + + P D L H Q +GERLYP++ Sbjct: 2463 QRRGSNSKILWRSARERKALNLDARPYTPPNSSDNATPESLNDHLSVHLQQIGERLYPKI 2522 Query: 497 QAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAMELIVAHGRENGAXXXXXXX 556 ++ A KITGM R +V EA+E+I + + Sbjct: 2523 HSINQTHAPKITGMLLEIPTPQLLSVISSDETLRQKVNEAIEIITFKQKSETSA------ 2576 Query: 557 XXXXXEKVQENRKRHGSSRSVVXXXXXXXXXXXXNAPLFYQPGKRGFYTPRPGKNTEARL 616 Q ++ + S VV N PLFY PGKRGFY PR G + R+ Sbjct: 2577 --------QSSQPKKSPSVVVVDPVDDD------NEPLFYSPGKRGFYIPRQGFASFERI 2622 Query: 617 NCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILAS 676 N FRNIGR++GLCLLQNEL P+ L RHV+K +L RK+ +HD AFFDP +YES RQ+I + Sbjct: 2623 NAFRNIGRLIGLCLLQNELLPLFLQRHVLKYILRRKIKFHDLAFFDPALYESFRQIIQNA 2682 Query: 677 QSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQNVYEYVRKYAEHRM-LV 735 Q+ + + + M+L F +DL KEEG G ELIP G ++ V+ + +Y ++ + Sbjct: 2683 QTKEGEETINRMELCFVIDLMKEEGCGNRELIPGGRDV-VSHRVIYSSTSDAIQNIDXIK 2741 Query: 736 VAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAE 795 E+ L A++ G+ DVLP NS+ +LTAED RLL+NG G++NV LIS+T+FNDES E + Sbjct: 2742 SQEKALEALKDGVFDVLPDNSMINLTAEDLRLLLNGVGDINVSTLISYTTFNDESSEGPD 2801 Query: 796 KLL-QFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPT 854 K L +FK+WFWSIVE+M++ ERQ LVYFWT SP+LPASEEGFQP+PS+TIRP DD HLPT Sbjct: 2802 K-LXKFKKWFWSIVEKMNIMERQHLVYFWTGSPALPASEEGFQPLPSVTIRPADDSHLPT 2860 Query: 855 ANTCISRLYVPXXXXXXXXXXXXXXXXXXXNFGFV 889 ANTCISRLY+P NFGFV Sbjct: 2861 ANTCISRLYIPLYSSKSILRSKMLMAIKSKNFGFV 2895 Score = 254 bits (643), Expect = 4e-67 Identities = 69/209 (33%), Positives = 107/209 (51%), Gaps = 26/209 (12%) Query: 3 SARGDFLNYALSLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNQQTTLDTPQ 62 ++R DF Y LSLMRSH EH D LPVLD+ +L+H+AYV A +Y+++ N D Sbjct: 1913 NSRRDFFTYCLSLMRSHTSEHRDALPVLDITALRHIAYVLDAFVYYMR--NDSGFYDKQD 1970 Query: 63 XXXXXXXXXXXXGIXXXXXXXXXXXXTSQSATLNDKDDE------SLPA--ETGQNHPFF 114 I + A L + + + S+P+ + + H FF Sbjct: 1971 SISGR--------INNLSPMTESYDTDDELANLEEFNADVQMSASSMPSGSQGTRRHAFF 2022 Query: 115 RRSDSMTFLGCIPPNPFEVPLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSAGSGK 174 RS+S LGC P FE+PL A+PLAD+PHLLQPN+++++LF + +++ SG Sbjct: 2023 ARSESTLTLGCSAPEGFELPLDMAMPLADKPHLLQPNSKRQELFANLPLLVTTNANNSG- 2081 Query: 175 CLVEVTMD---RNCLEVLPTKMSYAANLK 200 T D + + PT++ ++ +LK Sbjct: 2082 ----ATNDGDGASIFDYTPTRLGFSNSLK 2106 >PUB1_SCHPO Q92462 schizosaccharomyces pombe (fission yeast). ubiquitin--protein ligase pub1 (ec 6.3.2.-). 12/1998 Length = 767 Score = 341 bits (866), Expect = 3e-93 Identities = 69/265 (26%), Positives = 115/265 (43%), Gaps = 18/265 (6%) Query: 606 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVM 665 P G N E LN F+ IGR++GL + K++L +KV D D Sbjct: 491 PHSGINPE-HLNYFKFIGRVIGLAIFHRRFVDAFFVVSFYKMILQKKVTLQDMESMDAEY 549 Query: 666 YESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQNVYEYV 725 Y SL ++ + D FS D F + ++L PNG NI VT +N EYV Sbjct: 550 YRSLVWILDNDITGVLDLTFSVEDNCFGEVVT-------IDLKPNGRNIEVTEENKREYV 602 Query: 726 RKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTS 785 R+ E+ +A +G +++P+ + + LL+ G E++++ T Sbjct: 603 DLVTVWRIQKRIEEQFNAFHEGFSELIPQELINVFDERELELLIGGISEIDMEDWKKHTD 662 Query: 786 FNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASE----EGFQPMPS 841 + S + Q +WFW +++ S ++ L+ F T + +P + +G Sbjct: 663 YRSYSEND-----QIIKWFWELMDEWSNEKKSRLLQFTTGTSRIPVNGFKDLQGSDGPRK 717 Query: 842 ITIRPP-DDQHLPTANTCISRLYVP 865 TI + LP A+TC +RL +P Sbjct: 718 FTIEKAGEPNKLPKAHTCFNRLDLP 742 >NED4_HUMAN P46934 homo sapiens (human). nedd-4 protein (ec 6.3.2.-) (kiaa0093) (fragment). 7/1999 Length = 927 Score = 340 bits (862), Expect = 9e-93 Identities = 71/268 (26%), Positives = 119/268 (43%), Gaps = 23/268 (8%) Query: 606 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVM 665 P G E L+ F+ IGR+ G+ + +L R K++L + + HD D Sbjct: 649 PNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLHKPITLHDMESVDSEY 708 Query: 666 YESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQV---ELIPNGVNIPVTPQNVY 722 Y SLR ++ + +DL F +D EE GQ EL G I VT +N Sbjct: 709 YNSLRWILENDPTE--------LDLRFIID---EELFGQTHQHELKNGGSEIVVTNKNKK 757 Query: 723 EYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLIS 782 EY+ + R + ++ + A ++G +++P++ ++ + LL+ G G+V+V Sbjct: 758 EYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVNDWRE 817 Query: 783 FTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASE----EGFQP 838 T + + N Q +WFW V M +R L+ F T + +P + G Sbjct: 818 HTKYKNGYSANH----QVIQWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAELYGSNG 873 Query: 839 MPSITIRP-PDDQHLPTANTCISRLYVP 865 S T+ + LP A+TC +RL +P Sbjct: 874 PQSFTVEQWGTPEKLPRAHTCFNRLDLP 901 >NED4_MOUSE P46935 mus musculus (mouse). nedd-4 protein (ec 6.3.2.-) (fragment). 11/1997 Length = 957 Score = 339 bits (861), Expect = 1e-92 Identities = 71/268 (26%), Positives = 117/268 (43%), Gaps = 23/268 (8%) Query: 606 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVM 665 P G E L+ F+ IGR+ G+ + +L R K++L + + HD D Sbjct: 679 PNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLQKLITLHDMESVDSEY 738 Query: 666 YESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQV---ELIPNGVNIPVTPQNVY 722 Y SLR ++ + +DL F +D EE GQ EL G I VT +N Sbjct: 739 YSSLRWILENDPTE--------LDLRFIID---EELFGQTHQHELKTGGSEIVVTNKNKK 787 Query: 723 EYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLIS 782 EY+ + R + ++ + A ++G +++P++ ++ + LL+ G G+V+V Sbjct: 788 EYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVNDWRE 847 Query: 783 FTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASE----EGFQP 838 T + + N Q WFW V M +R L+ F T + +P + G Sbjct: 848 HTKYKNGYSMNH----QVIHWFWKAVWMMDSEKRIRLLQFVTGTSRVPMNGFAELYGSNG 903 Query: 839 MPSITIRP-PDDQHLPTANTCISRLYVP 865 S T+ LP A+TC +RL +P Sbjct: 904 PQSFTVEQWGTPDKLPRAHTCFNRLDLP 931 >RSP5_YEAST P39940 saccharomyces cerevisiae (baker's yeast). ubiquitin--protein ligase rsp5 (ec 6.3.2.-). 7/1999 Length = 809 Score = 331 bits (839), Expect = 4e-90 Identities = 69/265 (26%), Positives = 116/265 (43%), Gaps = 18/265 (6%) Query: 606 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVM 665 P G N E LN F+ IGR++GL + + K++L +KV D D + Sbjct: 533 PNSGINPE-HLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEV 591 Query: 666 YESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQNVYEYV 725 Y SL ++ S D FSA D F + V+L P+G NI VT N EYV Sbjct: 592 YNSLNWMLENSIDGVLDLTFSADDERFGEVVT-------VDLKPDGRNIEVTDGNKKEYV 644 Query: 726 RKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTS 785 Y + R++ ++ A G +++P++ + + LL+ G E++++ T Sbjct: 645 ELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHTD 704 Query: 786 FNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASE----EGFQPMPS 841 + + + +WFW V +R L+ F T + +P + +G Sbjct: 705 YRGYQESD-----EVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRR 759 Query: 842 ITIRPPDD-QHLPTANTCISRLYVP 865 TI + Q LP ++TC +R+ +P Sbjct: 760 FTIEKAGEVQQLPKSHTCFNRVDLP 784 >UE3A_HUMAN Q05086 homo sapiens (human). ubiquitin-protein ligase e3a (ec 6.3.2.-) (oncogenic protein- associated protein e6-ap) (human papillomavirus e6-associated protein). 5/2000 Length = 875 Score = 316 bits (802), Expect = 9e-86 Identities = 67/249 (26%), Positives = 116/249 (45%), Gaps = 12/249 (4%) Query: 619 FRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQS 678 F IG +LGL + N + + V + L+G+K + D PV+Y+SL+ L+ + Sbjct: 612 FTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGN 671 Query: 679 SDADAVFSAMDLAFAVDLCKEEGGGQV-ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVA 737 + D M + F + G + +L NG IP+T +N E+V Y+++ + Sbjct: 672 VEDD-----MMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSV 726 Query: 738 EQPLHAMRKGLLDVLPKNSLED-LTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEK 796 E+ A R+G V ++ L+ E+ LL+ G ++ Q L T + + G + Sbjct: 727 EKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEY--DGGYTRDS 784 Query: 797 LLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTAN 856 +L R FW IV + +++ + F T + P G M I PD + LPT++ Sbjct: 785 VL--IREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKM-IIAKNGPDTERLPTSH 841 Query: 857 TCISRLYVP 865 TC + L +P Sbjct: 842 TCFNVLLLP 850 >UE3A_MOUSE O08759 mus musculus (mouse). ubiquitin-protein ligase e3a (ec 6.3.2.-) (oncogenic protein- associated protein e6-ap). 5/2000 Length = 885 Score = 307 bits (777), Expect = 8e-83 Identities = 67/249 (26%), Positives = 114/249 (44%), Gaps = 13/249 (5%) Query: 619 FRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQS 678 F IG + GL + N + + V + L+G+K + D PV+Y+SL+ L+ S Sbjct: 623 FTLIGIL-GLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGS 681 Query: 679 SDADAVFSAMDLAFAVDLCKEEGGGQV-ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVA 737 + D M + F + G + +L NG IP+T +N E+V Y+++ + Sbjct: 682 VEDD-----MMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVISYSDYILNKSV 736 Query: 738 EQPLHAMRKGLLDVLPKNSLED-LTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEK 796 E+ A R+G V ++ L+ E+ LL+ G ++ Q L T + + G E Sbjct: 737 EKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEY--DGGYTRES 794 Query: 797 LLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTAN 856 + R FW IV + +++ + F T + P G M I PD + LPT++ Sbjct: 795 V--VIREFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGLGKLKM-IIAKNGPDTERLPTSH 851 Query: 857 TCISRLYVP 865 TC + L +P Sbjct: 852 TCFNVLLLP 860 >HUL4_YEAST P40985 saccharomyces cerevisiae (baker's yeast). probable ubiquitin--protein ligase hul4 (ec 6.3.2.-). 5/2000 Length = 892 Score = 290 bits (735), Expect = 7e-78 Identities = 58/271 (21%), Positives = 116/271 (42%), Gaps = 16/271 (5%) Query: 604 YTPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDP 663 + GKN++ L + G ++GL + + + + + + K L +++ D++ P Sbjct: 602 FDKSKGKNSQLEL--YYLFGVVMGLAIFNSTILDLQFPKALYKKLCSEPLSFEDYSELFP 659 Query: 664 VMYESLRQLILASQSSDADAVFSAMDLAFAV------DLCKEEGGGQVELIPNGVNIPVT 717 +L +++ ++ + D + + D + VEL NG N+P+T Sbjct: 660 ETSRNLIKMLNYTEDNFEDVFSLTFETTYRNNNWILNDSKSSKEYVTVELCENGRNVPIT 719 Query: 718 PQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPK-NSLEDLTAEDFRLLVNGCGE-- 774 N +E+V K+ E + E + G V + NS++ +E+ LV G E Sbjct: 720 QSNKHEFVMKWVEFYLEKSIEPQYNKFVSGFKRVFAECNSIKLFNSEELERLVCGDEEQT 779 Query: 775 -VNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASE 833 + + L S T + +++ + WFW I+E ++ L+ F T+S +PA+ Sbjct: 780 KFDFKSLRSVTKYVGGFSDDSRAVC----WFWEIIESWDYPLQKKLLQFVTASDRIPATG 835 Query: 834 EGFQPMPSITIRPPDDQHLPTANTCISRLYV 864 P + D LP A+TC + + + Sbjct: 836 ISTIPFKISLLGSHDSDDLPLAHTCFNEICL 866 >TR12_HUMAN Q14669 homo sapiens (human). thyroid receptor interacting protein 12 (trip12) (kiaa0045). 12/1998 Length = 1992 Score = 284 bits (720), Expect = 4e-76 Identities = 58/286 (20%), Positives = 109/286 (37%), Gaps = 28/286 (9%) Query: 605 TPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNW--HDFAFFD 662 T +P + ++ FR +G+++ ++ L + L K +L ++ + HD D Sbjct: 1684 TAKPAHIAKVKMK-FRFLGKLMAKAIMDFRLVDLPLGLPFYKWMLRQETSLTSHDLFDID 1742 Query: 663 PVMYES---LRQLILASQSSDADAVFSAMDLAFAVDL-----CKEE---------GGGQV 705 PV+ S L ++ + + D + L +A++ C E G + Sbjct: 1743 PVVARSVYHLEDIVRQKKRLEQDKSQTKESLQYALETLTMNGCSVEDLGLDFTLPGFPNI 1802 Query: 706 ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDF 765 EL G +IPVT N+ EY+R + + + R G V P + L+ E+ Sbjct: 1803 ELKKGGKDIPVTIHNLEEYLRLVIFWALNEGVSRQFDSFRDGFESVFPLSHLQYFYPEEL 1862 Query: 766 RLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTS 825 L+ G + G + + ++ + I+ +++ + F T Sbjct: 1863 DQLLCGSKADTWDAKTLMECCRPDHGYTHDS--RAVKFLFEILSSFDNEQQRLFLQFVTG 1920 Query: 826 SPSLPASEEGFQPMPSITIRP------PDDQHLPTANTCISRLYVP 865 SP LP P +R D LP+ TC++ L +P Sbjct: 1921 SPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLP 1966 >URB1_RAT P51593 rattus norvegicus (rat). dna binding protein ure-b1 (ec 6.3.2.-). 10/1996 Length = 310 Score = 280 bits (708), Expect = 1e-74 Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 19/250 (7%) Query: 623 GRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQSSDAD 682 GR + ++ L R K +LG+ V + D D Y+ L L+ D Sbjct: 45 GRYVAKAVMTTALLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLEN------D 98 Query: 683 AVFSAMDLAFAVDLCKEEGGGQV-ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPL 741 DL F+ ++ +E G +V +L PNG NI VT +N EYV + RM + L Sbjct: 99 VSTLGYDLTFSTEV-QEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQL 157 Query: 742 HAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFK 801 A +G +++PK + T ++ LL G +++ L S T ++ + + Sbjct: 158 AAFLEGFYEIIPKRLISIFTEQELELLYTGLPTIDIDDLKSNTEYHKYQSNSIQ-----I 212 Query: 802 RWFWSIVERMSMTERQDLVYFWTSSPSLP----ASEEGFQPMPSITIRPPD--DQHLPTA 855 +WFW + +R + F T + +P A+ EG + I D LP+A Sbjct: 213 QWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSA 272 Query: 856 NTCISRLYVP 865 +TC ++L +P Sbjct: 273 HTCFNQLDLP 282 >Y032_HUMAN Q15034 homo sapiens (human). hypothetical protein kiaa0032. 5/2000 Length = 1050 Score = 275 bits (696), Expect = 3e-73 Identities = 58/256 (22%), Positives = 96/256 (36%), Gaps = 15/256 (5%) Query: 613 EARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQL 672 N F IG GL + + + + + K LL K D P SL++L Sbjct: 782 FVEHNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQEL 841 Query: 673 ILASQSSDADAVFSAMDLAFAVDLCKEEGGG--QVELIPNGVNIPVTPQNVYEYVRKYAE 730 + D + F L F + C+E G Q +LIP G N+ V N E+V Y Sbjct: 842 LDY-PGEDVEETFC---LNFTI--CRESYGVIEQKKLIPGGDNVTVCKDNRQEFVDAYVN 895 Query: 731 HRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDES 790 + + + A G L V LE + R ++ G N + L + + Sbjct: 896 YVFQISVHEWYTAFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWEELEETAIYKGDY 955 Query: 791 GENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMPS-ITIRPPDD 849 + + FW + +++ + F T S +P G + I + Sbjct: 956 SATHPTV----KLFWETFHEFPLEKKKKFLLFLTGSDRIPI--YGMASLQIVIQSTASGE 1009 Query: 850 QHLPTANTCISRLYVP 865 ++LP A+TC + L +P Sbjct: 1010 EYLPVAHTCYNLLDLP 1025 >UFD4_YEAST P33202 saccharomyces cerevisiae (baker's yeast). ubiquitin fusion degradation protein 4 (ub fusion protein 4). 11/1997 Length = 1483 Score = 259 bits (656), Expect = 1e-68 Identities = 60/277 (21%), Positives = 109/277 (38%), Gaps = 29/277 (10%) Query: 607 RPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLG------------RKVN 654 P N E + F +G + LL N + ++ ++L + Sbjct: 1192 NPFSNNEKVIELFGYLGTFVARSLLDNRILDFRFSKVFFELLHRMSTPNVTTVPSDVETC 1251 Query: 655 WHDFAFFDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNI 714 DP++ +SL+ ++ D + ++ L F V G +ELIP G N Sbjct: 1252 LLMIELVDPLLAKSLKYIVAN---KDDNMTLESLSLTFTVP-----GNDDIELIPGGCNK 1303 Query: 715 PVTPQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGE 774 + NV EY+ + + E+ L A +G V + L ++ + + G E Sbjct: 1304 SLNSSNVEEYIHGVIDQILGKGIEKQLKAFIEGFSKVFSYERMLILFPDEL-VDIFGRVE 1362 Query: 775 VNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASE- 833 + M +T+ N E G + + F SI+ ER+ + F T SP LP Sbjct: 1363 EDWSMATLYTNLNAEHGYTMDSSI--IHDFISIISAFGKHERRLFLQFLTGSPKLPIGGF 1420 Query: 834 EGFQPMPSITIRPPD-----DQHLPTANTCISRLYVP 865 + P ++ ++ + D++LP+ TC + L +P Sbjct: 1421 KSLNPKFTVVLKHAEDGLTADEYLPSVMTCANYLKLP 1457 >HUL5_YEAST P53119 saccharomyces cerevisiae (baker's yeast). probable ubiquitin--protein ligase hul5 (ec 6.3.2.-). 5/2000 Length = 910 Score = 258 bits (652), Expect = 4e-68 Identities = 68/259 (26%), Positives = 125/259 (48%), Gaps = 21/259 (8%) Query: 615 RLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLL----GRKVNWHDFAFFDPVMYESLR 670 +L +G+++G CL ++ L ++ +K LL G ++ D +D V+Y +L Sbjct: 640 KLKYIWFLGKVVGKCLYEHVLIDVSFADFFLKKLLNYSNGFLSSFSDLGSYDSVLYNNLI 699 Query: 671 QLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQNVYEYVRKYAE 730 +L+ ++D ++DL F +D E V+LIPNG VT NV YV K + Sbjct: 700 KLLN--MTTDE---IKSLDLTFEIDE-PESSAKVVDLIPNGSKTYVTKDNVLLYVTKVTD 753 Query: 731 HRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCG-EVNVQMLISFTSFNDE 789 +++ +P+ A GL ++ + +E + + ++L++G +++ L S T + Sbjct: 754 YKLNKRCFKPVSAFHGGLSVIIAPHWMEMFNSIELQMLISGERDNIDLDDLKSNTEYGGY 813 Query: 790 SGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPM-PSITIRPPD 848 E+ Q FW ++ E+ + + F TS P P +GF+ + P IR Sbjct: 814 KEED-----QTIVDFWEVLNEFKFEEKLNFLKFVTSVPQAP--LQGFKALDPKFGIRNAG 866 Query: 849 DQ--HLPTANTCISRLYVP 865 + LPTA+TC++ L +P Sbjct: 867 TEKYRLPTASTCVNLLKLP 885 >PAB1_HUMAN P11940 homo sapiens (human). polyadenylate-binding protein 1 (poly(a) binding protein 1) (pabp 1). 7/1998 Length = 636 Score = 86.6 bits (211), Expect = 2e-16 Identities = 25/71 (35%), Positives = 35/71 (49%) Query: 479 DPLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAME 538 P +Q LGERL+P +QAM P A KITGM R++V+EA+ Sbjct: 553 APPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVA 612 Query: 539 LIVAHGRENGA 549 ++ AH + A Sbjct: 613 VLQAHQAKEAA 623 >PABP_DROME P21187 drosophila melanogaster (fruit fly). polyadenylate-binding protein (poly(a) binding protein) (pabp). 2/1995 Length = 632 Score = 85.9 bits (209), Expect = 3e-16 Identities = 22/72 (30%), Positives = 30/72 (41%) Query: 478 PDPLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAM 537 +Q LGERLYP ++ M A KITGM +A+VEEA+ Sbjct: 560 NAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAV 619 Query: 538 ELIVAHGRENGA 549 ++ H A Sbjct: 620 AVLQVHRVTEPA 631 >PABP_XENLA P20965 xenopus laevis (african clawed frog). polyadenylate-binding protein (poly(a) binding protein) (pabp). 7/1998 Length = 633 Score = 85.5 bits (208), Expect = 4e-16 Identities = 25/71 (35%), Positives = 34/71 (47%) Query: 479 DPLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAME 538 P +Q LGERL+P +QAM P A KITGM R +V+EA+ Sbjct: 551 APPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRLKVDEAVA 610 Query: 539 LIVAHGRENGA 549 ++ AH + A Sbjct: 611 VLQAHQAKEAA 621 >PAB1_MOUSE P29341 mus musculus (mouse). polyadenylate-binding protein 1 (poly(a) binding protein 1) (pabp 1). 7/1998 Length = 636 Score = 85.5 bits (208), Expect = 4e-16 Identities = 25/71 (35%), Positives = 36/71 (50%) Query: 479 DPLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAME 538 P +Q LGERL+P +QAM P+ A KITGM R++V+EA+ Sbjct: 553 APPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVA 612 Query: 539 LIVAHGRENGA 549 ++ AH + A Sbjct: 613 VLQAHQAKEAA 623 >PABP_SCHPO P31209 schizosaccharomyces pombe (fission yeast). polyadenylate-binding protein (poly(a) binding protein) (pabp). 7/1998 Length = 653 Score = 78.1 bits (189), Expect = 7e-14 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 6/80 (7%) Query: 468 PASEGNPSDDPD------PLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXX 521 PA G P P + +Q LGE LYP+V + + KITGM Sbjct: 563 PAVPGMPERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLE 622 Query: 522 XXXXXXXXRARVEEAMELIV 541 RV EA+ ++ Sbjct: 623 LLEDDSALNERVNEAIGVLQ 642 >PAB2_ARATH P42731 arabidopsis thaliana (mouse-ear cress). polyadenylate-binding protein 2 (poly(a) binding protein 2) (pabp 2). 12/1998 Length = 629 Score = 66.0 bits (158), Expect = 3e-10 Identities = 18/63 (28%), Positives = 28/63 (43%) Query: 478 PDPLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAM 537 R LGE LYP V+ ++ A+K+TGM +A+V EAM Sbjct: 549 NATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 608 Query: 538 ELI 540 +++ Sbjct: 609 DVL 611 >PAB5_ARATH Q05196 arabidopsis thaliana (mouse-ear cress). polyadenylate-binding protein 5 (poly(a) binding protein 5) (pabp 5). 11/1995 Length = 668 Score = 51.2 bits (120), Expect = 9e-06 Identities = 17/62 (27%), Positives = 29/62 (46%) Query: 479 DPLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAME 538 H + LG+ LYP V+ +PA +K+TGM +A+V EA++ Sbjct: 585 ASPDKHPRMLGDHLYPLVEQQEPANPAKVTGMLLEMDQAEILHLLESPEALKAKVSEALD 644 Query: 539 LI 540 ++ Sbjct: 645 VL 646 >PABP_YEAST P04147 saccharomyces cerevisiae polyadenylate-binding protein, cytoplasmic and nuclear (pabp) (ars consensus binding protein acbp-67) (polyadenylate tail-binding protein). 2/1996 Length = 576 Score = 45.3 bits (105), Expect = 5e-04 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 6/49 (12%) Query: 468 PASEGNPSDDPDP----LPAHRQALGERLYPRVQAM--QPAFASKITGM 510 P G P + D RQALGE+LY +V A A KITGM Sbjct: 484 PPQGGFPRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGM 532 >RNR_AQUAE O67834 aquifex aeolicus. ribonuclease r (ec 3.1.-.-) (rnase r) (vacb protein homolog). 5/2000 Length = 705 Score = 32.9 bits (73), Expect = 2.9 Identities = 17/92 (18%), Positives = 25/92 (26%), Gaps = 13/92 (14%) Query: 686 SAMDLAFAVDLCKEEGGGQ---VELIPNGVNIPVTPQNVYEYVRKY-AEHRMLVVAEQPL 741 L F +D K +EL P G YV + + E Sbjct: 243 LREQLCFTIDPEKAGDFDDAVAIELTPEGY--------YKLYVHIADVSYYVREGTETDK 294 Query: 742 HAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCG 773 A ++G P +L L E + Sbjct: 295 EAYKRGFTYYFPDRALHML-PEKLSAKLCSLR 325 >NIRA_EMENI P28348 emericella nidulans (aspergillus nidulans). nitrogen assimilation transcription factor nira. 4/1993 Length = 892 Score = 32.9 bits (73), Expect = 2.9 Identities = 22/95 (23%), Positives = 35/95 (36%) Query: 219 LAEEADSSKPGPSAHDVAAQLKSSLLAEIGLTESEGPPLTSFRPQCSFMGMVISHDMLLG 278 +A + S+ GP + ++ S A++ E+ P T RP + G V S Sbjct: 702 VASQYSSTPSGPVSVSAMRAVQRSFSAQLAHNEARQPEPTYLRPVSTSYGPVPSTQSAQE 761 Query: 279 RWRLSLELFGRVFMEDVGAEPGSILTELGGFEVKE 313 +W E R F S + L F+ E Sbjct: 762 QWYSPTEAQFRAFTAAHSMPTTSAQSPLTTFDTPE 796 Searching.................................................done Results from round 5 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: 100K_RAT Q62671 rattus norvegicus (rat). 100 kda protein (ec... 1214 0.0 HYDP_DROME P51592 drosophila melanogaster (fruit fly). hyper... 689 0.0 PUB1_SCHPO Q92462 schizosaccharomyces pombe (fission yeast).... 342 2e-93 NED4_HUMAN P46934 homo sapiens (human). nedd-4 protein (ec 6... 341 4e-93 NED4_MOUSE P46935 mus musculus (mouse). nedd-4 protein (ec 6... 340 5e-93 RSP5_YEAST P39940 saccharomyces cerevisiae (baker's yeast). ... 331 3e-90 UE3A_HUMAN Q05086 homo sapiens (human). ubiquitin-protein li... 316 9e-86 UE3A_MOUSE O08759 mus musculus (mouse). ubiquitin-protein li... 307 8e-83 HUL4_YEAST P40985 saccharomyces cerevisiae (baker's yeast). ... 290 7e-78 TR12_HUMAN Q14669 homo sapiens (human). thyroid receptor int... 284 4e-76 URB1_RAT P51593 rattus norvegicus (rat). dna binding protein... 280 8e-75 Y032_HUMAN Q15034 homo sapiens (human). hypothetical protein... 275 2e-73 UFD4_YEAST P33202 saccharomyces cerevisiae (baker's yeast). ... 260 9e-69 HUL5_YEAST P53119 saccharomyces cerevisiae (baker's yeast). ... 258 5e-68 PABP_DROME P21187 drosophila melanogaster (fruit fly). polya... 81 1e-14 PAB1_HUMAN P11940 homo sapiens (human). polyadenylate-bindin... 80 2e-14 PAB1_MOUSE P29341 mus musculus (mouse). polyadenylate-bindin... 79 3e-14 PABP_XENLA P20965 xenopus laevis (african clawed frog). poly... 78 5e-14 PABP_SCHPO P31209 schizosaccharomyces pombe (fission yeast).... 70 2e-11 PAB2_ARATH P42731 arabidopsis thaliana (mouse-ear cress). po... 65 7e-10 PAB5_ARATH Q05196 arabidopsis thaliana (mouse-ear cress). po... 64 9e-10 PABP_YEAST P04147 saccharomyces cerevisiae polyadenylate-bin... 58 9e-08 Sequences not found previously or not previously below threshold: RNR_AQUAE O67834 aquifex aeolicus. ribonuclease r (ec 3.1.-.... 33 2.2 NIRA_EMENI P28348 emericella nidulans (aspergillus nidulans)... 33 2.9 CONVERGED! >100K_RAT Q62671 rattus norvegicus (rat). 100 kda protein (ec 6.3.2.-). 7/1999 Length = 889 Score = 1214 bits (3106), Expect = 0.0 Identities = 765/889 (86%), Positives = 765/889 (86%) Query: 1 MMSARGDFLNYALSLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNQQTTLDT 60 MMSARGDFLNYALSLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNQQTTLDT Sbjct: 1 MMSARGDFLNYALSLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNQQTTLDT 60 Query: 61 PQXXXXXXXXXXXXGIXXXXXXXXXXXXTSQSATLNDKDDESLPAETGQNHPFFRRSDSM 120 PQ GI TSQSATLNDKDDESLPAETGQNHPFFRRSDSM Sbjct: 61 PQLERKRTRELLELGIDNEDSEHENDDDTSQSATLNDKDDESLPAETGQNHPFFRRSDSM 120 Query: 121 TFLGCIPPNPFEVPLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSAGSGKCLVEVT 180 TFLGCIPPNPFEVPLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSAGSGKCLVEVT Sbjct: 121 TFLGCIPPNPFEVPLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSAGSGKCLVEVT 180 Query: 181 MDRNCLEVLPTKMSYAANLKNVMNMQNRQKKAGEDQSMLAEEADSSKPGPSAHDVAAQLK 240 MDRNCLEVLPTKMSYAANLKNVMNMQNRQKKAGEDQSMLAEEADSSKPGPSAHDVAAQLK Sbjct: 181 MDRNCLEVLPTKMSYAANLKNVMNMQNRQKKAGEDQSMLAEEADSSKPGPSAHDVAAQLK 240 Query: 241 SSLLAEIGLTESEGPPLTSFRPQCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPG 300 SSLLAEIGLTESEGPPLTSFRPQCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPG Sbjct: 241 SSLLAEIGLTESEGPPLTSFRPQCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPG 300 Query: 301 SILTELGGFEVKESKFRREMEKLRNQQSRDLSLEVDRDRDLLIQQTMRQLNNHFGRRCAT 360 SILTELGGFEVKESKFRREMEKLRNQQSRDLSLEVDRDRDLLIQQTMRQLNNHFGRRCAT Sbjct: 301 SILTELGGFEVKESKFRREMEKLRNQQSRDLSLEVDRDRDLLIQQTMRQLNNHFGRRCAT 360 Query: 361 TPMAVHRVKVTFKDEPGEGSGVARSFYTAIAQAFLSNEKLPNLDCIQNANKGTHTSLMQX 420 TPMAVHRVKVTFKDEPGEGSGVARSFYTAIAQAFLSNEKLPNLDCIQNANKGTHTSLMQ Sbjct: 361 TPMAVHRVKVTFKDEPGEGSGVARSFYTAIAQAFLSNEKLPNLDCIQNANKGTHTSLMQR 420 Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLSIDTRPFRPASEGNPSDDPDP 480 QLSIDTRPFRPASEGNPSDDPDP Sbjct: 421 LRNRGERDREREREREMRRSSGLRAGSRRDRDRDFRRQLSIDTRPFRPASEGNPSDDPDP 480 Query: 481 LPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAMELI 540 LPAHRQALGERLYPRVQAMQPAFASKITGM RARVEEAMELI Sbjct: 481 LPAHRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELI 540 Query: 541 VAHGRENGAXXXXXXXXXXXXEKVQENRKRHGSSRSVVXXXXXXXXXXXXNAPLFYQPGK 600 VAHGRENGA EKVQENRKRHGSSRSVV NAPLFYQPGK Sbjct: 541 VAHGRENGADSILDLGLLDSSEKVQENRKRHGSSRSVVDMDLDDTDDGDDNAPLFYQPGK 600 Query: 601 RGFYTPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAF 660 RGFYTPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAF Sbjct: 601 RGFYTPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAF 660 Query: 661 FDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQN 720 FDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQN Sbjct: 661 FDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQN 720 Query: 721 VYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQML 780 VYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQML Sbjct: 721 VYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQML 780 Query: 781 ISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMP 840 ISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMP Sbjct: 781 ISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMP 840 Query: 841 SITIRPPDDQHLPTANTCISRLYVPXXXXXXXXXXXXXXXXXXXNFGFV 889 SITIRPPDDQHLPTANTCISRLYVP NFGFV Sbjct: 841 SITIRPPDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFGFV 889 >HYDP_DROME P51592 drosophila melanogaster (fruit fly). hyperplastic discs protein (hyd protein) (ec 6.3.2.-). 12/1998 Length = 2895 Score = 689 bits (1758), Expect = 0.0 Identities = 281/635 (44%), Positives = 374/635 (58%), Gaps = 34/635 (5%) Query: 263 QCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPGSILTELGGFEVKESKFRREMEK 322 Q +F G+ + +L + L+L+LFGR FM+DVG E GS+L EL GF VKE +FRR MEK Sbjct: 2287 QSNFSGIAPCNFLLSAK--LTLDLFGRPFMDDVGMEHGSVLPELRGFPVKEMRFRRHMEK 2344 Query: 323 LRNQQSRDLSL-EVDRDRDLLIQQTMRQLNNHFGR--RCATTPMAVHRVKVTFKDEPGEG 379 LRN Q RDL L +++R+R+ LI QT ++LN FG R P+ +RVKVTFKDEPGEG Sbjct: 2345 LRNGQQRDLVLCKLERNRESLIVQTFKELNTQFGNQSRRIQPPITFNRVKVTFKDEPGEG 2404 Query: 380 SGVARSFYTAIAQAFLSNEKLPNLDCIQNANKGTHTSLMQXXXXXXXXXXXXXXXXXXXX 439 SGVARSFYT+IA+A L++ K+PNL+ +Q H+ + Sbjct: 2405 SGVARSFYTSIAEALLASAKIPNLESVQVGTN--HSKYVVPFSSILRTTVSGSSRDQSTL 2462 Query: 440 XXXXXXXXXXXXXXXXXXQLSIDTRPFRPASEGN---PSDDPDPLPAHRQALGERLYPRV 496 L++D RP+ P + + P D L H Q +GERLYP++ Sbjct: 2463 QRRGSNSKILWRSARERKALNLDARPYTPPNSSDNATPESLNDHLSVHLQQIGERLYPKI 2522 Query: 497 QAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAMELIVAHGRENGAXXXXXXX 556 ++ A KITGM R +V EA+E+I + + Sbjct: 2523 HSINQTHAPKITGMLLEIPTPQLLSVISSDETLRQKVNEAIEIITFKQKSETSA------ 2576 Query: 557 XXXXXEKVQENRKRHGSSRSVVXXXXXXXXXXXXNAPLFYQPGKRGFYTPRPGKNTEARL 616 Q ++ + S VV N PLFY PGKRGFY PR G + R+ Sbjct: 2577 --------QSSQPKKSPSVVVVDPVDDD------NEPLFYSPGKRGFYIPRQGFASFERI 2622 Query: 617 NCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILAS 676 N FRNIGR++GLCLLQNEL P+ L RHV+K +L RK+ +HD AFFDP +YES RQ+I + Sbjct: 2623 NAFRNIGRLIGLCLLQNELLPLFLQRHVLKYILRRKIKFHDLAFFDPALYESFRQIIQNA 2682 Query: 677 QSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQNVYEYVRKYAEHRM-LV 735 Q+ + + + M+L F +DL KEEG G ELIP G ++ V+ + +Y ++ + Sbjct: 2683 QTKEGEETINRMELCFVIDLMKEEGCGNRELIPGGRDV-VSHRVIYSSTSDAIQNIDXIK 2741 Query: 736 VAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAE 795 E+ L A++ G+ DVLP NS+ +LTAED RLL+NG G++NV LIS+T+FNDES E + Sbjct: 2742 SQEKALEALKDGVFDVLPDNSMINLTAEDLRLLLNGVGDINVSTLISYTTFNDESSEGPD 2801 Query: 796 KLL-QFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPT 854 K L +FK+WFWSIVE+M++ ERQ LVYFWT SP+LPASEEGFQP+PS+TIRP DD HLPT Sbjct: 2802 K-LXKFKKWFWSIVEKMNIMERQHLVYFWTGSPALPASEEGFQPLPSVTIRPADDSHLPT 2860 Query: 855 ANTCISRLYVPXXXXXXXXXXXXXXXXXXXNFGFV 889 ANTCISRLY+P NFGFV Sbjct: 2861 ANTCISRLYIPLYSSKSILRSKMLMAIKSKNFGFV 2895 Score = 255 bits (644), Expect = 3e-67 Identities = 69/209 (33%), Positives = 107/209 (51%), Gaps = 26/209 (12%) Query: 3 SARGDFLNYALSLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNQQTTLDTPQ 62 ++R DF Y LSLMRSH EH D LPVLD+ +L+H+AYV A +Y+++ N D Sbjct: 1913 NSRRDFFTYCLSLMRSHTSEHRDALPVLDITALRHIAYVLDAFVYYMR--NDSGFYDKQD 1970 Query: 63 XXXXXXXXXXXXGIXXXXXXXXXXXXTSQSATLNDKDDE------SLPA--ETGQNHPFF 114 I + A L + + + S+P+ + + H FF Sbjct: 1971 SISGR--------INNLSPMTESYDTDDELANLEEFNADVQMSASSMPSGSQGTRRHAFF 2022 Query: 115 RRSDSMTFLGCIPPNPFEVPLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSAGSGK 174 RS+S LGC P FE+PL A+PLAD+PHLLQPN+++++LF + +++ SG Sbjct: 2023 ARSESTLTLGCSAPEGFELPLDMAMPLADKPHLLQPNSKRQELFANLPLLVTTNANNSG- 2081 Query: 175 CLVEVTMD---RNCLEVLPTKMSYAANLK 200 T D + + PT++ ++ +LK Sbjct: 2082 ----ATNDGDGASIFDYTPTRLGFSNSLK 2106 >PUB1_SCHPO Q92462 schizosaccharomyces pombe (fission yeast). ubiquitin--protein ligase pub1 (ec 6.3.2.-). 12/1998 Length = 767 Score = 342 bits (867), Expect = 2e-93 Identities = 69/265 (26%), Positives = 115/265 (43%), Gaps = 18/265 (6%) Query: 606 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVM 665 P G N E LN F+ IGR++GL + K++L +KV D D Sbjct: 491 PHSGINPE-HLNYFKFIGRVIGLAIFHRRFVDAFFVVSFYKMILQKKVTLQDMESMDAEY 549 Query: 666 YESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQNVYEYV 725 Y SL ++ + D FS D F + ++L PNG NI VT +N EYV Sbjct: 550 YRSLVWILDNDITGVLDLTFSVEDNCFGEVVT-------IDLKPNGRNIEVTEENKREYV 602 Query: 726 RKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTS 785 R+ E+ +A +G +++P+ + + LL+ G E++++ T Sbjct: 603 DLVTVWRIQKRIEEQFNAFHEGFSELIPQELINVFDERELELLIGGISEIDMEDWKKHTD 662 Query: 786 FNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASE----EGFQPMPS 841 + S + Q +WFW +++ S ++ L+ F T + +P + +G Sbjct: 663 YRSYSEND-----QIIKWFWELMDEWSNEKKSRLLQFTTGTSRIPVNGFKDLQGSDGPRK 717 Query: 842 ITIRPP-DDQHLPTANTCISRLYVP 865 TI + LP A+TC +RL +P Sbjct: 718 FTIEKAGEPNKLPKAHTCFNRLDLP 742 >NED4_HUMAN P46934 homo sapiens (human). nedd-4 protein (ec 6.3.2.-) (kiaa0093) (fragment). 7/1999 Length = 927 Score = 341 bits (865), Expect = 4e-93 Identities = 71/268 (26%), Positives = 119/268 (43%), Gaps = 23/268 (8%) Query: 606 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVM 665 P G E L+ F+ IGR+ G+ + +L R K++L + + HD D Sbjct: 649 PNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLHKPITLHDMESVDSEY 708 Query: 666 YESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQV---ELIPNGVNIPVTPQNVY 722 Y SLR ++ + +DL F +D EE GQ EL G I VT +N Sbjct: 709 YNSLRWILENDPTE--------LDLRFIID---EELFGQTHQHELKNGGSEIVVTNKNKK 757 Query: 723 EYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLIS 782 EY+ + R + ++ + A ++G +++P++ ++ + LL+ G G+V+V Sbjct: 758 EYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVNDWRE 817 Query: 783 FTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASE----EGFQP 838 T + + N Q +WFW V M +R L+ F T + +P + G Sbjct: 818 HTKYKNGYSANH----QVIQWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAELYGSNG 873 Query: 839 MPSITIRP-PDDQHLPTANTCISRLYVP 865 S T+ + LP A+TC +RL +P Sbjct: 874 PQSFTVEQWGTPEKLPRAHTCFNRLDLP 901 >NED4_MOUSE P46935 mus musculus (mouse). nedd-4 protein (ec 6.3.2.-) (fragment). 11/1997 Length = 957 Score = 340 bits (864), Expect = 5e-93 Identities = 71/268 (26%), Positives = 117/268 (43%), Gaps = 23/268 (8%) Query: 606 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVM 665 P G E L+ F+ IGR+ G+ + +L R K++L + + HD D Sbjct: 679 PNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLQKLITLHDMESVDSEY 738 Query: 666 YESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQV---ELIPNGVNIPVTPQNVY 722 Y SLR ++ + +DL F +D EE GQ EL G I VT +N Sbjct: 739 YSSLRWILENDPTE--------LDLRFIID---EELFGQTHQHELKTGGSEIVVTNKNKK 787 Query: 723 EYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLIS 782 EY+ + R + ++ + A ++G +++P++ ++ + LL+ G G+V+V Sbjct: 788 EYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVNDWRE 847 Query: 783 FTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASE----EGFQP 838 T + + N Q WFW V M +R L+ F T + +P + G Sbjct: 848 HTKYKNGYSMNH----QVIHWFWKAVWMMDSEKRIRLLQFVTGTSRVPMNGFAELYGSNG 903 Query: 839 MPSITIRP-PDDQHLPTANTCISRLYVP 865 S T+ LP A+TC +RL +P Sbjct: 904 PQSFTVEQWGTPDKLPRAHTCFNRLDLP 931 >RSP5_YEAST P39940 saccharomyces cerevisiae (baker's yeast). ubiquitin--protein ligase rsp5 (ec 6.3.2.-). 7/1999 Length = 809 Score = 331 bits (840), Expect = 3e-90 Identities = 69/265 (26%), Positives = 116/265 (43%), Gaps = 18/265 (6%) Query: 606 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVM 665 P G N E LN F+ IGR++GL + + K++L +KV D D + Sbjct: 533 PNSGINPE-HLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEV 591 Query: 666 YESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQNVYEYV 725 Y SL ++ S D FSA D F + V+L P+G NI VT N EYV Sbjct: 592 YNSLNWMLENSIDGVLDLTFSADDERFGEVVT-------VDLKPDGRNIEVTDGNKKEYV 644 Query: 726 RKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTS 785 Y + R++ ++ A G +++P++ + + LL+ G E++++ T Sbjct: 645 ELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHTD 704 Query: 786 FNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASE----EGFQPMPS 841 + + + +WFW V +R L+ F T + +P + +G Sbjct: 705 YRGYQESD-----EVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRR 759 Query: 842 ITIRPPDD-QHLPTANTCISRLYVP 865 TI + Q LP ++TC +R+ +P Sbjct: 760 FTIEKAGEVQQLPKSHTCFNRVDLP 784 >UE3A_HUMAN Q05086 homo sapiens (human). ubiquitin-protein ligase e3a (ec 6.3.2.-) (oncogenic protein- associated protein e6-ap) (human papillomavirus e6-associated protein). 5/2000 Length = 875 Score = 316 bits (802), Expect = 9e-86 Identities = 67/249 (26%), Positives = 116/249 (45%), Gaps = 12/249 (4%) Query: 619 FRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQS 678 F IG +LGL + N + + V + L+G+K + D PV+Y+SL+ L+ + Sbjct: 612 FTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGN 671 Query: 679 SDADAVFSAMDLAFAVDLCKEEGGGQV-ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVA 737 + D M + F + G + +L NG IP+T +N E+V Y+++ + Sbjct: 672 VEDD-----MMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSV 726 Query: 738 EQPLHAMRKGLLDVLPKNSLED-LTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEK 796 E+ A R+G V ++ L+ E+ LL+ G ++ Q L T + + G + Sbjct: 727 EKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEY--DGGYTRDS 784 Query: 797 LLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTAN 856 +L R FW IV + +++ + F T + P G M I PD + LPT++ Sbjct: 785 VL--IREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKM-IIAKNGPDTERLPTSH 841 Query: 857 TCISRLYVP 865 TC + L +P Sbjct: 842 TCFNVLLLP 850 >UE3A_MOUSE O08759 mus musculus (mouse). ubiquitin-protein ligase e3a (ec 6.3.2.-) (oncogenic protein- associated protein e6-ap). 5/2000 Length = 885 Score = 307 bits (777), Expect = 8e-83 Identities = 67/249 (26%), Positives = 114/249 (44%), Gaps = 13/249 (5%) Query: 619 FRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQS 678 F IG + GL + N + + V + L+G+K + D PV+Y+SL+ L+ S Sbjct: 623 FTLIGIL-GLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGS 681 Query: 679 SDADAVFSAMDLAFAVDLCKEEGGGQV-ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVA 737 + D M + F + G + +L NG IP+T +N E+V Y+++ + Sbjct: 682 VEDD-----MMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVISYSDYILNKSV 736 Query: 738 EQPLHAMRKGLLDVLPKNSLED-LTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEK 796 E+ A R+G V ++ L+ E+ LL+ G ++ Q L T + + G E Sbjct: 737 EKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEY--DGGYTRES 794 Query: 797 LLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTAN 856 + R FW IV + +++ + F T + P G M I PD + LPT++ Sbjct: 795 V--VIREFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGLGKLKM-IIAKNGPDTERLPTSH 851 Query: 857 TCISRLYVP 865 TC + L +P Sbjct: 852 TCFNVLLLP 860 >HUL4_YEAST P40985 saccharomyces cerevisiae (baker's yeast). probable ubiquitin--protein ligase hul4 (ec 6.3.2.-). 5/2000 Length = 892 Score = 290 bits (735), Expect = 7e-78 Identities = 58/271 (21%), Positives = 116/271 (42%), Gaps = 16/271 (5%) Query: 604 YTPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDP 663 + GKN++ L + G ++GL + + + + + + K L +++ D++ P Sbjct: 602 FDKSKGKNSQLEL--YYLFGVVMGLAIFNSTILDLQFPKALYKKLCSEPLSFEDYSELFP 659 Query: 664 VMYESLRQLILASQSSDADAVFSAMDLAFAV------DLCKEEGGGQVELIPNGVNIPVT 717 +L +++ ++ + D + + D + VEL NG N+P+T Sbjct: 660 ETSRNLIKMLNYTEDNFEDVFSLTFETTYRNNNWILNDSKSSKEYVTVELCENGRNVPIT 719 Query: 718 PQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPK-NSLEDLTAEDFRLLVNGCGE-- 774 N +E+V K+ E + E + G V + NS++ +E+ LV G E Sbjct: 720 QSNKHEFVMKWVEFYLEKSIEPQYNKFVSGFKRVFAECNSIKLFNSEELERLVCGDEEQT 779 Query: 775 -VNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASE 833 + + L S T + +++ + WFW I+E ++ L+ F T+S +PA+ Sbjct: 780 KFDFKSLRSVTKYVGGFSDDSRAVC----WFWEIIESWDYPLQKKLLQFVTASDRIPATG 835 Query: 834 EGFQPMPSITIRPPDDQHLPTANTCISRLYV 864 P + D LP A+TC + + + Sbjct: 836 ISTIPFKISLLGSHDSDDLPLAHTCFNEICL 866 >TR12_HUMAN Q14669 homo sapiens (human). thyroid receptor interacting protein 12 (trip12) (kiaa0045). 12/1998 Length = 1992 Score = 284 bits (720), Expect = 4e-76 Identities = 58/286 (20%), Positives = 109/286 (37%), Gaps = 28/286 (9%) Query: 605 TPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNW--HDFAFFD 662 T +P + ++ FR +G+++ ++ L + L K +L ++ + HD D Sbjct: 1684 TAKPAHIAKVKMK-FRFLGKLMAKAIMDFRLVDLPLGLPFYKWMLRQETSLTSHDLFDID 1742 Query: 663 PVMYES---LRQLILASQSSDADAVFSAMDLAFAVDL-----CKEE---------GGGQV 705 PV+ S L ++ + + D + L +A++ C E G + Sbjct: 1743 PVVARSVYHLEDIVRQKKRLEQDKSQTKESLQYALETLTMNGCSVEDLGLDFTLPGFPNI 1802 Query: 706 ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDF 765 EL G +IPVT N+ EY+R + + + R G V P + L+ E+ Sbjct: 1803 ELKKGGKDIPVTIHNLEEYLRLVIFWALNEGVSRQFDSFRDGFESVFPLSHLQYFYPEEL 1862 Query: 766 RLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTS 825 L+ G + G + + ++ + I+ +++ + F T Sbjct: 1863 DQLLCGSKADTWDAKTLMECCRPDHGYTHDS--RAVKFLFEILSSFDNEQQRLFLQFVTG 1920 Query: 826 SPSLPASEEGFQPMPSITIRP------PDDQHLPTANTCISRLYVP 865 SP LP P +R D LP+ TC++ L +P Sbjct: 1921 SPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLP 1966 >URB1_RAT P51593 rattus norvegicus (rat). dna binding protein ure-b1 (ec 6.3.2.-). 10/1996 Length = 310 Score = 280 bits (709), Expect = 8e-75 Identities = 64/250 (25%), Positives = 107/250 (42%), Gaps = 19/250 (7%) Query: 623 GRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQSSDAD 682 GR + ++ L R K +LG+ V + D D Y+ L L+ D Sbjct: 45 GRYVAKAVMTTALLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLEN------D 98 Query: 683 AVFSAMDLAFAVDLCKEEGGGQV-ELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPL 741 DL F+ ++ +E G +V +L PNG NI VT +N EYV + RM + L Sbjct: 99 VSTLGYDLTFSTEV-QEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQL 157 Query: 742 HAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFK 801 A +G +++PK + T ++ LL G +++ L S T ++ + + Sbjct: 158 AAFLEGFYEIIPKRLISIFTEQELELLYTGLPTIDIDDLKSNTEYHKYQSNSIQ-----I 212 Query: 802 RWFWSIVERMSMTERQDLVYFWTSSPSLPASE----EGFQPMPSITIRPPD--DQHLPTA 855 +WFW + +R + F T + +P EG + I D LP+A Sbjct: 213 QWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSA 272 Query: 856 NTCISRLYVP 865 +TC ++L +P Sbjct: 273 HTCFNQLDLP 282 >Y032_HUMAN Q15034 homo sapiens (human). hypothetical protein kiaa0032. 5/2000 Length = 1050 Score = 275 bits (697), Expect = 2e-73 Identities = 58/256 (22%), Positives = 96/256 (36%), Gaps = 15/256 (5%) Query: 613 EARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQL 672 N F IG GL + + + + + K LL K D P SL++L Sbjct: 782 FVEHNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQEL 841 Query: 673 ILASQSSDADAVFSAMDLAFAVDLCKEEGGG--QVELIPNGVNIPVTPQNVYEYVRKYAE 730 + D + F L F + C+E G Q +LIP G N+ V N E+V Y Sbjct: 842 LDY-PGEDVEETFC---LNFTI--CRESYGVIEQKKLIPGGDNVTVCKDNRQEFVDAYVN 895 Query: 731 HRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDES 790 + + + A G L V LE + R ++ G N + L + + Sbjct: 896 YVFQISVHEWYTAFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWEELEETAIYKGDY 955 Query: 791 GENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMPS-ITIRPPDD 849 + + FW + +++ + F T S +P G + I + Sbjct: 956 SATHPTV----KLFWETFHEFPLEKKKKFLLFLTGSDRIPI--YGMASLQIVIQSTASGE 1009 Query: 850 QHLPTANTCISRLYVP 865 ++LP A+TC + L +P Sbjct: 1010 EYLPVAHTCYNLLDLP 1025 >UFD4_YEAST P33202 saccharomyces cerevisiae (baker's yeast). ubiquitin fusion degradation protein 4 (ub fusion protein 4). 11/1997 Length = 1483 Score = 260 bits (657), Expect = 9e-69 Identities = 60/277 (21%), Positives = 109/277 (38%), Gaps = 29/277 (10%) Query: 607 RPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLG------------RKVN 654 P N E + F +G + LL N + ++ ++L + Sbjct: 1192 NPFSNNEKVIELFGYLGTFVARSLLDNRILDFRFSKVFFELLHRMSTPNVTTVPSDVETC 1251 Query: 655 WHDFAFFDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNI 714 DP++ +SL+ ++ D + ++ L F V G +ELIP G N Sbjct: 1252 LLMIELVDPLLAKSLKYIVAN---KDDNMTLESLSLTFTVP-----GNDDIELIPGGCNK 1303 Query: 715 PVTPQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGE 774 + NV EY+ + + E+ L A +G V + L ++ + + G E Sbjct: 1304 SLNSSNVEEYIHGVIDQILGKGIEKQLKAFIEGFSKVFSYERMLILFPDEL-VDIFGRVE 1362 Query: 775 VNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASE- 833 + M +T+ N E G + + F SI+ ER+ + F T SP LP Sbjct: 1363 EDWSMATLYTNLNAEHGYTMDSSI--IHDFISIISAFGKHERRLFLQFLTGSPKLPIGGF 1420 Query: 834 EGFQPMPSITIRPPD-----DQHLPTANTCISRLYVP 865 + P ++ ++ + D++LP+ TC + L +P Sbjct: 1421 KSLNPKFTVVLKHAEDGLTADEYLPSVMTCANYLKLP 1457 >HUL5_YEAST P53119 saccharomyces cerevisiae (baker's yeast). probable ubiquitin--protein ligase hul5 (ec 6.3.2.-). 5/2000 Length = 910 Score = 258 bits (651), Expect = 5e-68 Identities = 66/258 (25%), Positives = 120/258 (45%), Gaps = 19/258 (7%) Query: 615 RLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLL----GRKVNWHDFAFFDPVMYESLR 670 +L +G+++G CL ++ L ++ +K LL G ++ D +D V+Y +L Sbjct: 640 KLKYIWFLGKVVGKCLYEHVLIDVSFADFFLKKLLNYSNGFLSSFSDLGSYDSVLYNNLI 699 Query: 671 QLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQNVYEYVRKYAE 730 +L+ ++D ++DL F +D E V+LIPNG VT NV YV K + Sbjct: 700 KLLN--MTTDE---IKSLDLTFEIDE-PESSAKVVDLIPNGSKTYVTKDNVLLYVTKVTD 753 Query: 731 HRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCG-EVNVQMLISFTSFNDE 789 +++ +P+ A GL ++ + +E + + ++L++G +++ L S T + Sbjct: 754 YKLNKRCFKPVSAFHGGLSVIIAPHWMEMFNSIELQMLISGERDNIDLDDLKSNTEYGGY 813 Query: 790 SGENAEKLLQFKRWFWSIVERMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDD 849 E+ Q FW ++ E+ + + F TS P P P IR Sbjct: 814 KEED-----QTIVDFWEVLNEFKFEEKLNFLKFVTSVPQAPLQGFKALD-PKFGIRNAGT 867 Query: 850 Q--HLPTANTCISRLYVP 865 + LPTA+TC++ L +P Sbjct: 868 EKYRLPTASTCVNLLKLP 885 >PABP_DROME P21187 drosophila melanogaster (fruit fly). polyadenylate-binding protein (poly(a) binding protein) (pabp). 2/1995 Length = 632 Score = 80.8 bits (196), Expect = 1e-14 Identities = 22/73 (30%), Positives = 30/73 (40%) Query: 477 DPDPLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEA 536 +Q LGERLYP ++ M A KITGM +A+VEEA Sbjct: 559 ANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEA 618 Query: 537 MELIVAHGRENGA 549 + ++ H A Sbjct: 619 VAVLQVHRVTEPA 631 >PAB1_HUMAN P11940 homo sapiens (human). polyadenylate-binding protein 1 (poly(a) binding protein 1) (pabp 1). 7/1998 Length = 636 Score = 80.0 bits (194), Expect = 2e-14 Identities = 25/73 (34%), Positives = 35/73 (47%) Query: 477 DPDPLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEA 536 P +Q LGERL+P +QAM P A KITGM R++V+EA Sbjct: 551 ASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEA 610 Query: 537 MELIVAHGRENGA 549 + ++ AH + A Sbjct: 611 VAVLQAHQAKEAA 623 >PAB1_MOUSE P29341 mus musculus (mouse). polyadenylate-binding protein 1 (poly(a) binding protein 1) (pabp 1). 7/1998 Length = 636 Score = 79.2 bits (192), Expect = 3e-14 Identities = 25/73 (34%), Positives = 36/73 (49%) Query: 477 DPDPLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEA 536 P +Q LGERL+P +QAM P+ A KITGM R++V+EA Sbjct: 551 ASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEA 610 Query: 537 MELIVAHGRENGA 549 + ++ AH + A Sbjct: 611 VAVLQAHQAKEAA 623 >PABP_XENLA P20965 xenopus laevis (african clawed frog). polyadenylate-binding protein (poly(a) binding protein) (pabp). 7/1998 Length = 633 Score = 78.5 bits (190), Expect = 5e-14 Identities = 25/71 (35%), Positives = 34/71 (47%) Query: 479 DPLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAME 538 P +Q LGERL+P +QAM P A KITGM R +V+EA+ Sbjct: 551 APPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRLKVDEAVA 610 Query: 539 LIVAHGRENGA 549 ++ AH + A Sbjct: 611 VLQAHQAKEAA 621 >PABP_SCHPO P31209 schizosaccharomyces pombe (fission yeast). polyadenylate-binding protein (poly(a) binding protein) (pabp). 7/1998 Length = 653 Score = 69.9 bits (168), Expect = 2e-11 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 6/80 (7%) Query: 468 PASEGNPSDDPD------PLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXX 521 PA G P P + +Q LGE LYP+V + + KITGM Sbjct: 563 PAVPGMPERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLE 622 Query: 522 XXXXXXXXRARVEEAMELIV 541 RV EA+ ++ Sbjct: 623 LLEDDSALNERVNEAIGVLQ 642 >PAB2_ARATH P42731 arabidopsis thaliana (mouse-ear cress). polyadenylate-binding protein 2 (poly(a) binding protein 2) (pabp 2). 12/1998 Length = 629 Score = 64.8 bits (155), Expect = 7e-10 Identities = 18/63 (28%), Positives = 28/63 (43%) Query: 478 PDPLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAM 537 R LGE LYP V+ ++ A+K+TGM +A+V EAM Sbjct: 549 NATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 608 Query: 538 ELI 540 +++ Sbjct: 609 DVL 611 >PAB5_ARATH Q05196 arabidopsis thaliana (mouse-ear cress). polyadenylate-binding protein 5 (poly(a) binding protein 5) (pabp 5). 11/1995 Length = 668 Score = 64.4 bits (154), Expect = 9e-10 Identities = 17/62 (27%), Positives = 29/62 (46%) Query: 479 DPLPAHRQALGERLYPRVQAMQPAFASKITGMXXXXXXXXXXXXXXXXXXXRARVEEAME 538 H + LG+ LYP V+ +PA +K+TGM +A+V EA++ Sbjct: 585 ASPDKHPRMLGDHLYPLVEQQEPANPAKVTGMLLEMDQAEILHLLESPEALKAKVSEALD 644 Query: 539 LI 540 ++ Sbjct: 645 VL 646 >PABP_YEAST P04147 saccharomyces cerevisiae polyadenylate-binding protein, cytoplasmic and nuclear (pabp) (ars consensus binding protein acbp-67) (polyadenylate tail-binding protein). 2/1996 Length = 576 Score = 57.8 bits (137), Expect = 9e-08 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 6/49 (12%) Query: 468 PASEGNPSDDPDP----LPAHRQALGERLYPRVQAM--QPAFASKITGM 510 P G P + D RQALGE+LY +V A A KITGM Sbjct: 484 PPQGGFPRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGM 532 >RNR_AQUAE O67834 aquifex aeolicus. ribonuclease r (ec 3.1.-.-) (rnase r) (vacb protein homolog). 5/2000 Length = 705 Score = 33.3 bits (74), Expect = 2.2 Identities = 17/92 (18%), Positives = 25/92 (26%), Gaps = 13/92 (14%) Query: 686 SAMDLAFAVDLCKEEGGGQ---VELIPNGVNIPVTPQNVYEYVRKY-AEHRMLVVAEQPL 741 L F +D K +EL P G YV + + E Sbjct: 243 LREQLCFTIDPEKAGDFDDAVAIELTPEGY--------YKLYVHIADVSYYVREGTETDK 294 Query: 742 HAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCG 773 A ++G P +L L E + Sbjct: 295 EAYKRGFTYYFPDRALHML-PEKLSAKLCSLR 325 >NIRA_EMENI P28348 emericella nidulans (aspergillus nidulans). nitrogen assimilation transcription factor nira. 4/1993 Length = 892 Score = 32.9 bits (73), Expect = 2.9 Identities = 22/95 (23%), Positives = 35/95 (36%) Query: 219 LAEEADSSKPGPSAHDVAAQLKSSLLAEIGLTESEGPPLTSFRPQCSFMGMVISHDMLLG 278 +A + S+ GP + ++ S A++ E+ P T RP + G V S Sbjct: 702 VASQYSSTPSGPVSVSAMRAVQRSFSAQLAHNEARQPEPTYLRPVSTSYGPVPSTQSAQE 761 Query: 279 RWRLSLELFGRVFMEDVGAEPGSILTELGGFEVKE 313 +W E R F S + L F+ E Sbjct: 762 QWYSPTEAQFRAFTAAHSMPTTSAQSPLTTFDTPE 796 Database: /dbase/swissprot/main/release/sp Posted date: Jun 21, 2000 12:39 PM Number of letters in database: 31,411,157 Number of sequences in database: 86,593 Database: /dbase/swissprot/main/update/spu Posted date: Nov 3, 1999 8:09 PM Number of letters in database: 546,183 Number of sequences in database: 1608 Lambda K H 0.318 0.131 0.369 Lambda K H 0.270 0.0458 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 221707272 Number of Sequences: 88201 Number of extensions: 8189338 Number of successful extensions: 22743 Number of sequences better than 10.0: 125 Number of HSP's better than 10.0 without gapping: 105 Number of HSP's successfully gapped in prelim test: 20 Number of HSP's that attempted gapping in prelim test: 22304 Number of HSP's gapped (non-prelim): 150 length of query: 889 length of database: 31,957,340 effective HSP length: 55 effective length of query: 834 effective length of database: 27,106,285 effective search space: 22606641690 effective search space used: 22606641690 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.7 bits) S2: 69 (31.3 bits)