BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: NCBI Transcript Reference Sequences 2,903,055 sequences; 4,626,651,242 total letters Query= gi|356995852:1-490 Mus musculus POU domain, class 5, transcription factor 1 (Pou5f1), transcript variant 1, mRNA Length=490 Score E Sequences producing significant alignments: (Bits) Value ref|NM_013633.3| Mus musculus POU domain, class 5, transcription... 905 0.0 ref|XR_141831.1| PREDICTED: Mus musculus predicted gene, 19553 (... 900 0.0 ref|XR_107064.1| PREDICTED: Mus musculus hypothetical LOC1005051... 872 0.0 ref|XR_105908.1| PREDICTED: Mus musculus hypothetical LOC1005051... 872 0.0 ref|NM_001009178.2| Rattus norvegicus POU class 5 homeobox 1 (Po... 734 0.0 ref|NR_033594.1| Mus musculus predicted gene 5712 (Gm5712), non-... 446 1e-122 ref|XM_003505863.1| PREDICTED: Cricetulus griseus POU domain, cl... 433 8e-119 ref|NM_001252452.1| Mus musculus POU domain, class 5, transcript... 73.1 2e-10 >ref|NM_013633.3| Mus musculus POU domain, class 5, transcription factor 1 (Pou5f1), transcript variant 1, mRNA Length=1353 Score = 905 bits (490), Expect = 0.0 Identities = 490/490 (100%), Gaps = 0/490 (0%) Strand=Plus/Plus Query 1 GAGGTGAAACCGTCCCTAGGTGAGCCGTCTTTCCACCAGGCCCCCGGCTCGGGGTGCCCA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GAGGTGAAACCGTCCCTAGGTGAGCCGTCTTTCCACCAGGCCCCCGGCTCGGGGTGCCCA 60 Query 61 CCTTCCCCATGGCTGGACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCAGGTGGGG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CCTTCCCCATGGCTGGACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCAGGTGGGG 120 Query 121 GTGATGGGTCAGCAGGGCTGGAGCCGGGCTGGGTGGATCCTCGAACCTGGCTAAGCTTCC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GTGATGGGTCAGCAGGGCTGGAGCCGGGCTGGGTGGATCCTCGAACCTGGCTAAGCTTCC 180 Query 181 AAGGGCCTCCAGGTGGGCCTGGAATCGGACCAGGCTCAGAGGTATTGGGGATCTCCCCAT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AAGGGCCTCCAGGTGGGCCTGGAATCGGACCAGGCTCAGAGGTATTGGGGATCTCCCCAT 240 Query 241 GTCCGCCCGCATACGAGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGGACTGG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GTCCGCCCGCATACGAGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGGACTGG 300 Query 301 GCCTAGTCCCCCAAGTTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGCAGGAGCACGAG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GCCTAGTCCCCCAAGTTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGCAGGAGCACGAG 360 Query 361 TGGAAAGCAACTCAGAGGGAACCTCCTCTGAGCCCTGTGCCGACCGCCCCAATGCCGTGA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TGGAAAGCAACTCAGAGGGAACCTCCTCTGAGCCCTGTGCCGACCGCCCCAATGCCGTGA 420 Query 421 AGTTGGAGAAGGTGGAACCAACTCCCGAGGAGTCCCAGGACATGAAAGCCCTGCAGAAGG 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AGTTGGAGAAGGTGGAACCAACTCCCGAGGAGTCCCAGGACATGAAAGCCCTGCAGAAGG 480 Query 481 AGCTAGAACA 490 |||||||||| Sbjct 481 AGCTAGAACA 490 >ref|XR_141831.1| PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA ref|XR_105837.2| PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA ref|XR_141464.1| PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA ref|XR_141446.1| PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA Length=570 Score = 900 bits (487), Expect = 0.0 Identities = 489/490 (99%), Gaps = 0/490 (0%) Strand=Plus/Minus Query 1 GAGGTGAAACCGTCCCTAGGTGAGCCGTCTTTCCACCAGGCCCCCGGCTCGGGGTGCCCA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 570 GAGGTGAAACCGTCCCTAGGTGAGCCGTCTTTCCACCAGGCCCCCGGCTCGGGGTGCCCA 511 Query 61 CCTTCCCCATGGCTGGACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCAGGTGGGG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 510 CCTTCCCCATGGCTGGACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCAGGTGGGG 451 Query 121 GTGATGGGTCAGCAGGGCTGGAGCCGGGCTGGGTGGATCCTCGAACCTGGCTAAGCTTCC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 450 GTGATGGGTCAGCAGGGCTGGAGCCGGGCTGGGTGGATCCTCGAACCTGGCTAAGCTTCC 391 Query 181 AAGGGCCTCCAGGTGGGCCTGGAATCGGACCAGGCTCAGAGGTATTGGGGATCTCCCCAT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 390 AAGGGCCTCCAGGTGGGCCTGGAATCGGACCAGGCTCAGAGGTATTGGGGATCTCCCCAT 331 Query 241 GTCCGCCCGCATACGAGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGGACTGG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 330 GTCCGCCCGCATACGAGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGGACTGG 271 Query 301 GCCTAGTCCCCCAAGTTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGCAGGAGCACGAG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 270 GCCTAGTCCCCCAAGTTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGCAGGAGCACGAG 211 Query 361 TGGAAAGCAACTCAGAGGGAACCTCCTCTGAGCCCTGTGCCGACCGCCCCAATGCCGTGA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 210 TGGAAAGCAACTCAGAGGGAACCTCCTCTGAGCCCTGTGCCGACCGCCCCAATGCCGTGA 151 Query 421 AGTTGGAGAAGGTGGAACCAACTCCCGAGGAGTCCCAGGACATGAAAGCCCTGCAGAAGG 480 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 150 AGTTGGAGAAGGTGGAACCAACTCCAGAGGAGTCCCAGGACATGAAAGCCCTGCAGAAGG 91 Query 481 AGCTAGAACA 490 |||||||||| Sbjct 90 AGCTAGAACA 81 >ref|XR_107064.1| PREDICTED: Mus musculus hypothetical LOC100505104 (LOC100505104), partial miscRNA Length=505 Score = 872 bits (472), Expect = 0.0 Identities = 474/475 (99%), Gaps = 0/475 (0%) Strand=Plus/Minus Query 16 CTAGGTGAGCCGTCTTTCCACCAGGCCCCCGGCTCGGGGTGCCCACCTTCCCCATGGCTG 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 505 CTAGGTGAGCCGTCTTTCCACCAGGCCCCCGGCTCGGGGTGCCCACCTTCCCCATGGCTG 446 Query 76 GACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCAGGTGGGGGTGATGGGTCAGCAG 135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 445 GACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCAGGTGGGGGTGATGGGTCAGCAG 386 Query 136 GGCTGGAGCCGGGCTGGGTGGATCCTCGAACCTGGCTAAGCTTCCAAGGGCCTCCAGGTG 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 385 GGCTGGAGCCGGGCTGGGTGGATCCTCGAACCTGGCTAAGCTTCCAAGGGCCTCCAGGTG 326 Query 196 GGCCTGGAATCGGACCAGGCTCAGAGGTATTGGGGATCTCCCCATGTCCGCCCGCATACG 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 325 GGCCTGGAATCGGACCAGGCTCAGAGGTATTGGGGATCTCCCCATGTCCGCCCGCATACG 266 Query 256 AGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGGACTGGGCCTAGTCCCCCAAG 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 265 AGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGGACTGGGCCTAGTCCCCCAAG 206 Query 316 TTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGCAGGAGCACGAGTGGAAAGCAACTCAG 375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 205 TTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGCAGGAGCACGAGTGGAAAGCAACTCAG 146 Query 376 AGGGAACCTCCTCTGAGCCCTGTGCCGACCGCCCCAATGCCGTGAAGTTGGAGAAGGTGG 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 145 AGGGAACCTCCTCTGAGCCCTGTGCCGACCGCCCCAATGCCGTGAAGTTGGAGAAGGTGG 86 Query 436 AACCAACTCCCGAGGAGTCCCAGGACATGAAAGCCCTGCAGAAGGAGCTAGAACA 490 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 85 AACCAACTCCAGAGGAGTCCCAGGACATGAAAGCCCTGCAGAAGGAGCTAGAACA 31 >ref|XR_105908.1| PREDICTED: Mus musculus hypothetical LOC100505104 (LOC100505104), partial miscRNA Length=505 Score = 872 bits (472), Expect = 0.0 Identities = 474/475 (99%), Gaps = 0/475 (0%) Strand=Plus/Minus Query 16 CTAGGTGAGCCGTCTTTCCACCAGGCCCCCGGCTCGGGGTGCCCACCTTCCCCATGGCTG 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 505 CTAGGTGAGCCGTCTTTCCACCAGGCCCCCGGCTCGGGGTGCCCACCTTCCCCATGGCTG 446 Query 76 GACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCAGGTGGGGGTGATGGGTCAGCAG 135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 445 GACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCAGGTGGGGGTGATGGGTCAGCAG 386 Query 136 GGCTGGAGCCGGGCTGGGTGGATCCTCGAACCTGGCTAAGCTTCCAAGGGCCTCCAGGTG 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 385 GGCTGGAGCCGGGCTGGGTGGATCCTCGAACCTGGCTAAGCTTCCAAGGGCCTCCAGGTG 326 Query 196 GGCCTGGAATCGGACCAGGCTCAGAGGTATTGGGGATCTCCCCATGTCCGCCCGCATACG 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 325 GGCCTGGAATCGGACCAGGCTCAGAGGTATTGGGGATCTCCCCATGTCCGCCCGCATACG 266 Query 256 AGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGGACTGGGCCTAGTCCCCCAAG 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 265 AGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGGACTGGGCCTAGTCCCCCAAG 206 Query 316 TTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGCAGGAGCACGAGTGGAAAGCAACTCAG 375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 205 TTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGCAGGAGCACGAGTGGAAAGCAACTCAG 146 Query 376 AGGGAACCTCCTCTGAGCCCTGTGCCGACCGCCCCAATGCCGTGAAGTTGGAGAAGGTGG 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 145 AGGGAACCTCCTCTGAGCCCTGTGCCGACCGCCCCAATGCCGTGAAGTTGGAGAAGGTGG 86 Query 436 AACCAACTCCCGAGGAGTCCCAGGACATGAAAGCCCTGCAGAAGGAGCTAGAACA 490 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 85 AACCAACTCCAGAGGAGTCCCAGGACATGAAAGCCCTGCAGAAGGAGCTAGAACA 31 >ref|NM_001009178.2| Rattus norvegicus POU class 5 homeobox 1 (Pou5f1), mRNA gb|BC158566.1| Rattus norvegicus POU class 5 homeobox 1, mRNA (cDNA clone MGC:187285 IMAGE:9092936), complete cds Length=1388 Score = 734 bits (397), Expect = 0.0 Identities = 459/489 (94%), Gaps = 3/489 (1%) Strand=Plus/Plus Query 1 GAGGTG-AAACCGTCCCTAGGTGAGCCGTCTTTCCACCAGGCCCCCGGCTCGGGGTGCCC 59 |||||| |||| ||||||||||||| |||| |||||||||||||||||||||||| |||| Sbjct 12 GAGGTGCAAACAGTCCCTAGGTGAGTCGTCCTTCCACCAGGCCCCCGGCTCGGGGAGCCC 71 Query 60 ACCTTCCCCATGGCTGGACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCAGGTGGG 119 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 72 ACCTTCCCCATGGCTGGACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCTGGTGGG 131 Query 120 GGTGATGGGTCAGCAGGGCTGGAGCCGGGCTGGGTGGATCCTCGAACCTGGCTAAGCTTC 179 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 132 GGTGATGGGTCAGCAGGGCTGGAGCCGGGCTGGGTGGACCCTCGAACCTGGCTAAGCTTC 191 Query 180 CAAGGGCCTCCAGGTGGGCCTGGAATCGGACCAGGCTCAGAGGTATTGGGGATCTCCCCA 239 || ||||||||| |||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 192 CAGGGGCCTCCAAGTGGGCCTGGAATCGGACCAGGTTCAGAGGTGCTGGGGATCTCCCCG 251 Query 240 TGTCCGCCC-GCATACGAGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGGACT 298 ||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 252 TGTCC-CCCAGCATACGAGTTCTGTGGAGGGATGGCATACTGTGGACCTCAGGTTGGACT 310 Query 299 GGGCCTAGTCCCCCAAGTTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGCAGGAGCACG 358 ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct 311 GGGCCTAGTCCCCCAAGTTGGCGTGGAGACTCTGCAGCCCGAGGGCCAGGCAGGAGCACG 370 Query 359 AGTGGAAAGCAACTCAGAGGGAACCTCCTCTGAGCCCTGTGCCGACCGCCCCAATGCCGT 418 |||||| |||||||| |||||| ||||||||| ||||||| | | |||||||| ||||| Sbjct 371 AGTGGAGAGCAACTCGGAGGGAGCCTCCTCTGGGCCCTGTACTGCCCGCCCCAGCGCCGT 430 Query 419 GAAGTTGGAGAAGGTGGAACCAACTCCCGAGGAGTCCCAGGACATGAAAGCCCTGCAGAA 478 ||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||| Sbjct 431 GAAGTTGGAGAAGGTGGAACCTAGTCCCGAGGAGTCCCAGGATATGAAAGCCCTGCAGAA 490 Query 479 GGAGCTAGA 487 ||||||||| Sbjct 491 GGAGCTAGA 499 >ref|NR_033594.1| Mus musculus predicted gene 5712 (Gm5712), non-coding RNA Length=1040 Score = 446 bits (241), Expect = 1e-122 Identities = 367/422 (87%), Gaps = 32/422 (8%) Strand=Plus/Plus Query 69 ATGGCTGGACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCAGGTGGGGGTGATGGG 128 |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 1 ATGGCTGGACACCTGGCTTCAGACTTCGCCTTCTCACCCC-ACCAGGTGGGGGCGATGGG 59 Query 129 TCAGCAGGGCTGGAGCCGGGCTGGGTGGATCCTCGAACCTGGCTAAGCTTCCAAGGGCCT 188 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 60 TCAGCAGGGCTGGAGCCGGGCTGGGTGGACCCTCGAACCTGGCTAAGCTTCCAAGGGCCT 119 Query 189 CCAGGTGGGCCTGGAATCGGACCAGGCTCAGAGGTATTGGGGATCTCCCCATGTCCGCCC 248 | |||||||||||||| |||||||||| |||||||||||| |||||||||||||| || Sbjct 120 CTGGGTGGGCCTGGAATAGGACCAGGCTTAGAGGTATTGGG-ATCTCCCCATGTCCACCG 178 Query 249 GCATACGAGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGGACTGGGCCTAGTC 308 | ||| ||||||||||||||||||||||||||||||||||||| |||| | || Sbjct 179 GTATATGAGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGG-----CTGG-C---GT- 228 Query 309 CCCCAAGTTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGCAGGAGCACGAGTGGAAAGC 368 | | ||||||||||||||||| |||||||| ||||| | ||||| ||| Sbjct 229 ------G--G------AGACTTTGCAGCCTGAGAGCCAGGCAAGAGCAGGTGTGGAGAGC 274 Query 369 AACTCAGAGGGAA-CCTCCTCTGAGCCCTGTGCCGACCGCCCCAATGCCGTGAAGTTGGA 427 |||||||||| || ||| ||||| ||| |||||||||| ||||| ||||||||||||||| Sbjct 275 AACTCAGAGG-AAGCCTTCTCTGGGCCTTGTGCCGACCACCCCAGTGCCGTGAAGTTGGA 333 Query 428 GAAG-GTGGAACCAAC-TCCCGAGGAGTCCCAGGACATGAAAGCCCTGCAGAAGGAGCTA 485 || | | ||||||| | |||||||| ||||||||||||||||| |||||||||||||||| Sbjct 334 GATGAG-GGAACCA-CGTCCCGAGGGGTCCCAGGACATGAAAGTCCTGCAGAAGGAGCTA 391 Query 486 GA 487 || Sbjct 392 GA 393 >ref|XM_003505863.1| PREDICTED: Cricetulus griseus POU domain, class 5, transcription factor 1-like (LOC100754998), mRNA Length=1077 Score = 433 bits (234), Expect = 8e-119 Identities = 377/442 (85%), Gaps = 25/442 (6%) Strand=Plus/Plus Query 69 ATGGCTGGACACCTGGCTTCAGACTTCGCCTTCTCACCCCCACCAGGTGGGGGTGATGGG 128 |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| Sbjct 1 ATGGCTGGACACCTGGCTTCAGACTTTGCCTTCTCACCTCCACCTGGTGGGGGTGATGGG 60 Query 129 TCAGCAGGGCTGGAGCCGGGCTGGGTGGATCCTCGAACCTGGCTAAGCTTCCAAGGGCCT 188 |||| |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| Sbjct 61 TCAGGAGGGCTGGAGCCTGGCTGGGTGGACCCTCGGACCTGGCTAAGCTTCCAAGGGCCA 120 Query 189 CCAGGTGGGCCTGGAAT-----C-------GGACCAGGCTCAGAGGTATTGGGGATCTCC 236 ||||||||||||||||| | |||||||||||||| || ||||||| ||| Sbjct 121 CCAGGTGGGCCTGGAATCGGGCCAGGGGTTGGACCAGGCTCAGAAGTGCTGGGGATTTCC 180 Query 237 CCATGTCCGCCC-GCATACGAGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGG 295 || ||||| ||| ||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 181 CCTTGTCC-CCCACCATACGAGTTCTGTGGAGGGGTGGCATACTGTGGACCTCAGGTTGG 239 Query 296 ACTGGGCCTAGTCCC-CCAAGTTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGCAGGAG 354 |||||| ||||| || ||| |||||| ||||||||| ||||||||||||||| |||||| Sbjct 240 ACTGGGTCTAGTGCCGCCA-GTTGGCCTGGAGACTTCACAGCCTGAGGGCCAGTCAGGAG 298 Query 355 CACGAGTGGA-AAGCAACTCAGAGG-GAACCTCCTCTGAGCCCTGTGCCGACC-GCCCCA 411 || ||||||| || | |||| |||| | ||||| ||| ||||||| | | || | |||| Sbjct 299 CAGGAGTGGAGAA-CGACTCGGAGGAGT-CCTCCCCTGGGCCCTGTACTG-CCAGGCCCA 355 Query 412 ATG-CC--GTGAAGTTGGAGAAGGTGGAACCAACTCCCGAGGAGTCCCAGGACATGAAAG 468 || || ||||||||||||||||||||||| | |||||||||||||||||| |||| | Sbjct 356 TTGTCCCCGTGAAGTTGGAGAAGGTGGAACCGAGTCCCGAGGAGTCCCAGGATGTGAAGG 415 Query 469 CCCTGCAGAAGGAGCTAGAACA 490 || |||||||||| || ||||| Sbjct 416 CCTTGCAGAAGGAACTGGAACA 437 >ref|NM_001252452.1| Mus musculus POU domain, class 5, transcription factor 1 (Pou5f1), transcript variant 2, mRNA Length=991 Score = 73.1 bits (39), Expect = 2e-10 Identities = 39/39 (100%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 452 GTCCCAGGACATGAAAGCCCTGCAGAAGGAGCTAGAACA 490 ||||||||||||||||||||||||||||||||||||||| Sbjct 90 GTCCCAGGACATGAAAGCCCTGCAGAAGGAGCTAGAACA 128 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 2088197412320 Database: NCBI Transcript Reference Sequences Posted date: Mar 1, 2012 8:32 PM Number of letters in database: 4,626,651,242 Number of sequences in database: 2,903,055 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5