BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: NCBI Transcript Reference Sequences 2,903,055 sequences; 4,626,651,242 total letters Query= hg19_dna range=chr1:1207307-1207372 5'pad=0 3'pad=0 strand=+ repeatMasking=none Length=66 Score E Sequences producing significant alignments: (Bits) Value ref|XM_003267724.1| PREDICTED: Nomascus leucogenys ATG14 autopha... 115 3e-24 ref|NM_001040441.1| Homo sapiens zinc finger and BTB domain cont... 115 3e-24 ref|XM_003318468.1| PREDICTED: Pan troglodytes zinc finger prote... 111 4e-23 ref|XM_527768.3| PREDICTED: Pan troglodytes zinc finger protein ... 111 4e-23 ref|XM_003276378.1| PREDICTED: Nomascus leucogenys S100P binding... 111 4e-23 ref|XM_003276377.1| PREDICTED: Nomascus leucogenys S100P binding... 111 4e-23 ref|XM_001082839.2| PREDICTED: Macaca mulatta transmembrane prot... 111 4e-23 ref|NM_001132567.1| Pongo abelii zinc finger protein 665 (ZNF665... 111 4e-23 ref|XM_003311344.1| PREDICTED: Pan troglodytes hypothetical prot... 110 1e-22 ref|XM_516695.3| PREDICTED: Pan troglodytes poly (ADP-ribose) po... 110 1e-22 ref|XM_003268225.1| PREDICTED: Nomascus leucogenys ankyrin repea... 110 1e-22 ref|XM_003268224.1| PREDICTED: Nomascus leucogenys ankyrin repea... 110 1e-22 ref|XR_121161.1| PREDICTED: Nomascus leucogenys zinc/RING finger... 110 1e-22 ref|XM_002812147.1| PREDICTED: Pongo abelii spastin-like (LOC100... 110 1e-22 ref|XM_002805124.1| PREDICTED: Macaca mulatta putative uncharact... 110 1e-22 ref|NM_173511.3| Homo sapiens family with sequence similarity 11... 110 1e-22 ref|XM_515388.2| PREDICTED: Pan troglodytes spastin, transcript ... 110 1e-22 ref|XM_001164367.1| PREDICTED: Pan troglodytes spastin, transcri... 110 1e-22 ref|XM_003315843.1| PREDICTED: Pan troglodytes desmocollin 1, tr... 108 5e-22 ref|XM_518630.3| PREDICTED: Pan troglodytes arginyl-tRNA synthet... 108 5e-22 >ref|XM_003267724.1| PREDICTED: Nomascus leucogenys ATG14 autophagy related 14 homolog (S. cerevisiae) (ATG14), mRNA Length=4771 Score = 115 bits (62), Expect = 3e-24 Identities = 62/62 (100%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 5 GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaaaaaa 64 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2865 GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAA 2924 Query 65 aa 66 || Sbjct 2925 AA 2926 >ref|NM_001040441.1| Homo sapiens zinc finger and BTB domain containing 8A (ZBTB8A), mRNA Length=7333 Score = 115 bits (62), Expect = 3e-24 Identities = 62/62 (100%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 5 GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaaaaaa 64 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3677 GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAA 3736 Query 65 aa 66 || Sbjct 3737 AA 3738 Score = 99.0 bits (53), Expect = 3e-19 Identities = 53/53 (100%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 6 CCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaa 58 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2824 CCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAA 2876 >ref|XM_003318468.1| PREDICTED: Pan troglodytes zinc finger protein 273, transcript variant 1 (ZNF273), mRNA Length=4430 Score = 111 bits (60), Expect = 4e-23 Identities = 64/66 (97%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 1 TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaa 60 ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2800 TCACGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCGTCTCAAAAAAAAAAAA 2741 Query 61 aaaaaa 66 |||||| Sbjct 2740 AAAAAA 2735 >ref|XM_527768.3| PREDICTED: Pan troglodytes zinc finger protein 273, transcript variant 2 (ZNF273), mRNA Length=4335 Score = 111 bits (60), Expect = 4e-23 Identities = 64/66 (97%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 1 TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaa 60 ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2705 TCACGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCGTCTCAAAAAAAAAAAA 2646 Query 61 aaaaaa 66 |||||| Sbjct 2645 AAAAAA 2640 >ref|XM_003276378.1| PREDICTED: Nomascus leucogenys S100P binding protein, transcript variant 2 (S100PBP), mRNA Length=4345 Score = 111 bits (60), Expect = 4e-23 Identities = 64/66 (97%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 1 TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaa 60 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2857 TCATGCCACTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAA 2798 Query 61 aaaaaa 66 |||||| Sbjct 2797 AAAAAA 2792 >ref|XM_003276377.1| PREDICTED: Nomascus leucogenys S100P binding protein, transcript variant 1 (S100PBP), mRNA Length=4359 Score = 111 bits (60), Expect = 4e-23 Identities = 64/66 (97%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 1 TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaa 60 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2871 TCATGCCACTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAA 2812 Query 61 aaaaaa 66 |||||| Sbjct 2811 AAAAAA 2806 >ref|XM_001082839.2| PREDICTED: Macaca mulatta transmembrane protein 150B-like (LOC694136), mRNA Length=3419 Score = 111 bits (60), Expect = 4e-23 Identities = 64/66 (97%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 1 TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaa 60 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2716 TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCATCTCAAAAAAAAAAAA 2775 Query 61 aaaaaa 66 ||||| Sbjct 2776 GAAAAA 2781 >ref|NM_001132567.1| Pongo abelii zinc finger protein 665 (ZNF665), mRNA emb|CR859627.1| Pongo abelii mRNA; cDNA DKFZp459D1134 (from clone DKFZp459D1134) Length=2274 Score = 111 bits (60), Expect = 4e-23 Identities = 64/66 (97%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 1 TCAAGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaa 60 ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2209 TCATGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCGTCTCAAAAAAAAAAAA 2268 Query 61 aaaaaa 66 |||||| Sbjct 2269 AAAAAA 2274 >ref|XM_003311344.1| PREDICTED: Pan troglodytes hypothetical protein LOC100608148 (LOC100608148), mRNA Length=7609 Score = 110 bits (59), Expect = 1e-22 Identities = 61/62 (98%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 5 GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaaaaaa 64 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 6139 GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCTGTCTCAAAAAAAAAAAAAAAA 6080 Query 65 aa 66 || Sbjct 6079 AA 6078 >ref|XM_516695.3| PREDICTED: Pan troglodytes poly (ADP-ribose) polymerase family, member 14 (PARP14), mRNA Length=7914 Score = 110 bits (59), Expect = 1e-22 Identities = 61/62 (98%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 5 GCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCaaaaaaaaaaaaaaaa 64 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 6571 GCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCGTCTCAAAAAAAAAAAAAAAA 6512 Query 65 aa 66 || Sbjct 6511 AA 6510 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 177382481523 Database: NCBI Transcript Reference Sequences Posted date: Mar 1, 2012 8:32 PM Number of letters in database: 4,626,651,242 Number of sequences in database: 2,903,055 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5