BLASTP 2.2.26+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: NCBI Protein Reference Sequences 11,879,989 sequences; 4,140,237,112 total letters Query= gi|16080617|ref|NP_391444.1| membrane bound lipoprotein [Bacillus subtilis subsp. subtilis str. 168] Length=102 Score E Sequences producing significant alignments: (Bits) Value ref|NP_391444.1| membrane bound lipoprotein [Bacillus subtilis s... 205 1e-66 ref|YP_003922001.1| membrane bound lipoprotein [Bacillus amyloli... 139 1e-40 ref|YP_005132038.1| lytA gene product [Bacillus amyloliquefacien... 89.0 4e-21 ref|YP_001422840.1| LytA [Bacillus amyloliquefaciens FZB42] 89.0 5e-21 ref|YP_003974994.1| unnamed protein product [Bacillus atrophaeus... 83.2 9e-19 ref|ZP_06872708.1| hypothetical protein BSU6633_03962 [Bacillus ... 78.2 9e-17 ref|YP_003973943.1| unnamed protein product [Bacillus atrophaeus... 69.7 1e-13 ref|YP_001488429.1| lipoprotein [Bacillus pumilus SAFR-032] 65.5 5e-12 ref|ZP_03053924.1| LytA [Bacillus pumilus ATCC 7061] 65.1 7e-12 ref|YP_004879120.1| membrane-bound protein LytA [Bacillus subtil... 64.3 1e-11 ref|YP_079743.1| hypothetical protein BL01515 [Bacillus lichenif... 63.5 3e-11 ref|ZP_07999323.1| YqiH protein [Bacillus sp. BT1B_CT2] 63.9 3e-11 ref|NP_390300.2| lipoprotein [Bacillus subtilis subsp. subtilis ... 58.9 1e-09 ref|YP_004877911.1| hypothetical protein GYO_2666 [Bacillus subt... 58.2 2e-09 ref|YP_004204188.1| unnamed protein product [Bacillus subtilis B... 57.0 7e-09 ref|ZP_03592187.1| hypothetical protein Bsubs1_13266 [Bacillus s... 57.0 8e-09 ref|ZP_08002186.1| hypothetical protein HMPREF1012_03225 [Bacill... 53.1 2e-07 ref|YP_080891.1| membrane bound lipoprotein [Bacillus lichenifor... 52.8 2e-07 ref|YP_003974991.1| unnamed protein product [Bacillus atrophaeus... 52.0 5e-07 ref|YP_001421840.1| hypothetical protein RBAM_022480 [Bacillus a... 49.3 3e-06 >ref|NP_391444.1| membrane bound lipoprotein [Bacillus subtilis subsp. subtilis str. 168] ref|ZP_03593363.1| membrane bound lipoprotein [Bacillus subtilis subsp. subtilis str. 168] ref|ZP_03597648.1| membrane bound lipoprotein [Bacillus subtilis subsp. subtilis str. NCIB 3610] ref|ZP_03602051.1| membrane bound lipoprotein [Bacillus subtilis subsp. subtilis str. JH642] ref|ZP_03606337.1| membrane bound lipoprotein [Bacillus subtilis subsp. subtilis str. SMY] ref|YP_004205398.1| unnamed protein product [Bacillus subtilis BSn5] Length=102 Score = 205 bits (521), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 102/102 (100%), Positives = 102/102 (100%), Gaps = 0/102 (0%) Query 1 MKKFIALLFFILLLSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVDNEPV 60 MKKFIALLFFILLLSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVDNEPV Sbjct 1 MKKFIALLFFILLLSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVDNEPV 60 Query 61 SLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIERAN 102 SLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIERAN Sbjct 61 SLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIERAN 102 >ref|YP_003922001.1| membrane bound lipoprotein [Bacillus amyloliquefaciens DSM 7] Length=100 Score = 139 bits (350), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 69/102 (68%), Positives = 81/102 (79%), Gaps = 2/102 (2%) Query 1 MKKFIALLFFILLLSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVDNEPV 60 MKK LFFILLL+GCGV ++KSQGED + TKEGTYVGLADTHTIEVTVD+EPV Sbjct 1 MKKIFGCLFFILLLAGCGVTNEKSQGEDAG--EKLVTKEGTYVGLADTHTIEVTVDHEPV 58 Query 61 SLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIERAN 102 S DITEES D+ N+G+KVT+ Y+KN +GQL+LKDIE AN Sbjct 59 SFDITEESADDVKNLNNGEKVTVKYQKNSKGQLVLKDIEPAN 100 >ref|YP_005132038.1| lytA gene product [Bacillus amyloliquefaciens CAU-B946] Length=105 Score = 89.0 bits (219), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 48/105 (46%), Positives = 69/105 (66%), Gaps = 5/105 (5%) Query 1 MKKFIALLFFILL----LSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVD 56 MKK IA F ILL L+ CG Q +G S ++ + + YVG+ADTHTIEV VD Sbjct 1 MKKTIAASFLILLFSVVLAACGTAEQSKKGSG-SSENQAQKETAYYVGMADTHTIEVKVD 59 Query 57 NEPVSLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIERA 101 ++PVS + +++ + L+KF+ DKV+ITY ND+GQ +K+IE+A Sbjct 60 DQPVSFEFSDDFSDVLNKFSENDKVSITYFTNDKGQKEIKEIEKA 104 >ref|YP_001422840.1| LytA [Bacillus amyloliquefaciens FZB42] Length=105 Score = 89.0 bits (219), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 48/105 (46%), Positives = 69/105 (66%), Gaps = 5/105 (5%) Query 1 MKKFIALLFFILL----LSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVD 56 MKK IA F ILL L+ CG Q +G S ++ + + YVG+ADTHTIEV VD Sbjct 1 MKKTIAASFLILLFSVVLAACGTADQSKKGSG-SSENQAQKETAYYVGMADTHTIEVKVD 59 Query 57 NEPVSLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIERA 101 ++PVS + +++ + L+KF+ DKV+ITY ND+GQ +K+IE+A Sbjct 60 DQPVSFEFSDDFSDVLNKFSENDKVSITYFTNDKGQKEIKEIEKA 104 >ref|YP_003974994.1| unnamed protein product [Bacillus atrophaeus 1942] Length=105 Score = 83.2 bits (204), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 5/104 (5%) Query 1 MKKFIALLFFILL----LSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVD 56 MKK +A F ILL L+ CG Q +G + S S ++ + YVG+ADTHTIEV +D Sbjct 1 MKKNVASSFLILLFSIILAACGTAEQSKEG-NGSSSSQVQNETAYYVGMADTHTIEVKID 59 Query 57 NEPVSLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIER 100 ++PVS + T++ + L++F DKV I+Y ND+GQ L +IE+ Sbjct 60 DQPVSFEFTDDFSEILNEFEENDKVNISYLTNDKGQKELTEIEK 103 >ref|ZP_06872708.1| hypothetical protein BSU6633_03962 [Bacillus subtilis subsp. spizizenii ATCC 6633] ref|YP_003867840.1| lytA gene product [Bacillus subtilis subsp. spizizenii str. W23] Length=107 Score = 78.2 bits (191), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 45/105 (43%), Positives = 62/105 (59%), Gaps = 6/105 (6%) Query 1 MKKFIALLF-FILLLSGCGV--NSQKSQGEDVSPDSNIE---TKEGTYVGLADTHTIEVT 54 MKKF L F +LLLS CG NS S+ S D+ E TKEGT+ GLAD+HTI VT Sbjct 1 MKKFAILTFSMLLLLSACGTAENSSGSETNSGSQDAAAEETVTKEGTFAGLADSHTIAVT 60 Query 55 VDNEPVSLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIE 99 +D + S+ + + ++ + G KV + Y K+ G L+LKD+E Sbjct 61 IDGKETSIQVGSDLQDKMNNISEGQKVVVKYTKDSNGVLMLKDLE 105 >ref|YP_003973943.1| unnamed protein product [Bacillus atrophaeus 1942] Length=100 Score = 69.7 bits (169), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 58/99 (59%), Gaps = 4/99 (4%) Query 1 MKKFIALLFFILLLSGCGVNSQKSQGEDVSPDSNIETKEGTYVGLADTHTIEVTVDNEPV 60 M++ + LLF +L+L+GCG + +Q D SP T+EG Y+G AD HTI V +D E Sbjct 1 MRQTVLLLFGVLMLAGCGAAASANQA-DSSPKF---TQEGKYIGAADRHTIAVNIDGEEK 56 Query 61 SLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIE 99 +++ + ++ + KV + Y K+D G L L+DI+ Sbjct 57 MIEVPKNKRAECESLPDYTKVQVKYTKDDNGTLKLEDIK 95 >ref|YP_001488429.1| lipoprotein [Bacillus pumilus SAFR-032] Length=107 Score = 65.5 bits (158), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 63/107 (59%), Gaps = 7/107 (7%) Query 1 MKKFIALLFFILLL----SGCGVNSQKSQGEDVSPDSNIETKE--GTYVGLADTHTIEVT 54 MKK + L F ILLL + CG +++S GE+ + S + E ++G+AD HT+EV Sbjct 1 MKKIVVLPFLILLLGIVLTACG-TAEQSSGENKTSSSTPQVLEEKAEFIGMADAHTVEVK 59 Query 55 VDNEPVSLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIERA 101 N ++ + T+ L++FN GDKV I+Y ND GQ +++I++ Sbjct 60 KVNTTLNYEFTDNFKDVLNEFNPGDKVEISYFINDSGQKEIQEIKKV 106 >ref|ZP_03053924.1| LytA [Bacillus pumilus ATCC 7061] Length=107 Score = 65.1 bits (157), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 40/106 (38%), Positives = 61/106 (58%), Gaps = 7/106 (7%) Query 1 MKKFIALLFFILLL----SGCGVNSQKSQGEDVSPDSNIETKE--GTYVGLADTHTIEVT 54 MKK + L F ILLL + CG +++S GE+ + S + E ++G+AD HT+EV Sbjct 1 MKKIVVLPFLILLLGIVLTACG-TAEQSSGENNTSSSTPQVLEEKAEFIGMADAHTVEVK 59 Query 55 VDNEPVSLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIER 100 N +S + T+ L++F GDKV I+Y ND GQ ++ IE+ Sbjct 60 KVNTTLSYEFTDNFKDVLNEFKPGDKVEISYFINDSGQKEIQKIEK 105 >ref|YP_004879120.1| membrane-bound protein LytA [Bacillus subtilis subsp. spizizenii TU-B-10] Length=107 Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/105 (42%), Positives = 62/105 (59%), Gaps = 6/105 (6%) Query 1 MKKF-IALLFFILLLSGCGV--NSQKSQGEDVSPDSNIE---TKEGTYVGLADTHTIEVT 54 MKKF I + +LLLS CG NS S+ S D+ E TKEGT+ GLAD+HTI VT Sbjct 1 MKKFAILMFSMLLLLSACGTTENSSGSETNSGSQDAAAEETVTKEGTFAGLADSHTIAVT 60 Query 55 VDNEPVSLDITEESTSDLDKFNSGDKVTITYEKNDEGQLLLKDIE 99 +D + S+ + + ++ + G KV + Y K+ G L+LKD+E Sbjct 61 IDGKETSIQVGSDLQDKMNSISEGQKVVVKYTKDANGVLMLKDLE 105 Lambda K H 0.310 0.131 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 102199494683 Database: NCBI Protein Reference Sequences Posted date: Mar 18, 2012 8:41 PM Number of letters in database: 4,140,237,112 Number of sequences in database: 11,879,989 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40