BLASTX 2.2.26+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: NCBI Protein Reference Sequences 11,879,989 sequences; 4,140,237,112 total letters Query= gi|356995852:1-490 Mus musculus POU domain, class 5, transcription factor 1 (Pou5f1), transcript variant 1, mRNA Length=490 Score E Sequences producing significant alignments: (Bits) Value ref|NP_038661.2| POU domain, class 5, transcription factor 1 iso... 192 4e-57 ref|NP_001009178.1| POU class 5 homeobox 1 [Rattus norvegicus] 179 3e-52 ref|XP_003505911.1| PREDICTED: POU domain, class 5, transcriptio... 147 7e-40 ref|XP_001490158.1| PREDICTED: POU domain, class 5, transcriptio... 141 8e-38 ref|XP_001135162.1| PREDICTED: POU domain, class 5, transcriptio... 138 1e-36 ref|NP_002692.2| POU domain, class 5, transcription factor 1 iso... 138 2e-36 ref|XP_002809144.1| PREDICTED: POU domain, class 5, transcriptio... 137 2e-36 ref|XP_528230.1| PREDICTED: putative POU domain, class 5, transc... 133 1e-34 ref|XP_002746363.1| PREDICTED: POU domain, class 5, transcriptio... 133 1e-34 ref|NP_001108427.1| POU domain, class 5, transcription factor 1 ... 133 1e-34 ref|NP_001106531.1| POU domain, class 5, transcription factor 1 ... 133 1e-34 ref|XP_002752527.1| PREDICTED: POU domain, class 5, transcriptio... 132 2e-34 ref|NP_001166912.1| POU domain, class 5, transcription factor 1 ... 131 6e-34 ref|NP_777005.1| POU domain, class 5, transcription factor 1 [Bo... 131 6e-34 ref|NP_001153014.1| putative POU domain, class 5, transcription ... 128 6e-33 ref|NP_001093427.1| POU domain, class 5, transcription factor 1 ... 127 2e-32 ref|XP_538830.1| PREDICTED: POU domain, class 5, transcription f... 119 1e-29 ref|XP_003422494.1| PREDICTED: POU domain, class 5, transcriptio... 118 4e-29 ref|XP_003474038.1| PREDICTED: POU domain, class 5, transcriptio... 117 7e-29 ref|XP_003271964.1| PREDICTED: LOW QUALITY PROTEIN: POU domain, ... 111 7e-27 >ref|NP_038661.2| POU domain, class 5, transcription factor 1 isoform 1 [Mus musculus] Length=352 Score = 192 bits (487), Expect = 4e-57 Identities = 140/140 (100%), Positives = 140/140 (100%), Gaps = 0/140 (0%) Frame = +3 Query 69 MAGHLAsdfafspppgggdgsagLEPGWVDPRTWLSFQgppggpgigpgSEVLGISPCPP 248 MAGHLASDFAFSPPPGGGDGSAGLEPGWVDPRTWLSFQGPPGGPGIGPGSEVLGISPCPP Sbjct 1 MAGHLASDFAFSPPPGGGDGSAGLEPGWVDPRTWLSFQGPPGGPGIGPGSEVLGISPCPP 60 Query 249 AYEFCGGMAYCgpqvglglvpqvgvETLQPEGQAGARVESNSEGTSSEPCADRPNAVKLE 428 AYEFCGGMAYCGPQVGLGLVPQVGVETLQPEGQAGARVESNSEGTSSEPCADRPNAVKLE Sbjct 61 AYEFCGGMAYCGPQVGLGLVPQVGVETLQPEGQAGARVESNSEGTSSEPCADRPNAVKLE 120 Query 429 KVEPTPEESQDMKALQKELE 488 KVEPTPEESQDMKALQKELE Sbjct 121 KVEPTPEESQDMKALQKELE 140 >ref|NP_001009178.1| POU class 5 homeobox 1 [Rattus norvegicus] Length=352 Score = 179 bits (454), Expect = 3e-52 Identities = 133/140 (95%), Positives = 135/140 (96%), Gaps = 0/140 (0%) Frame = +3 Query 69 MAGHLAsdfafspppgggdgsagLEPGWVDPRTWLSFQgppggpgigpgSEVLGISPCPP 248 MAGHLASDFAFSPPPGGGDGSAGLEPGWVDPRTWLSFQGPP GPGIGPGSEVLGISPCPP Sbjct 1 MAGHLASDFAFSPPPGGGDGSAGLEPGWVDPRTWLSFQGPPSGPGIGPGSEVLGISPCPP 60 Query 249 AYEFCGGMAYCgpqvglglvpqvgvETLQPEGQAGARVESNSEGTSSEPCADRPNAVKLE 428 AYEFCGGMAYCGPQVGLGLVPQVGVETLQPEGQAGARVESNSEG SS PC RP+AVKLE Sbjct 61 AYEFCGGMAYCGPQVGLGLVPQVGVETLQPEGQAGARVESNSEGASSGPCTARPSAVKLE 120 Query 429 KVEPTPEESQDMKALQKELE 488 KVEP+PEESQDMKALQKELE Sbjct 121 KVEPSPEESQDMKALQKELE 140 >ref|XP_003505911.1| PREDICTED: POU domain, class 5, transcription factor 1-like [Cricetulus griseus] Length=358 Score = 147 bits (370), Expect = 7e-40 Identities = 120/145 (83%), Positives = 128/145 (88%), Gaps = 5/145 (3%) Frame = +3 Query 69 MAGHLAsdfafspppgggdgsagLEPGWVDPRTWLSFQgppggpgigpg----SEVLGIS 236 MAGHLASDFAFSPPPGGGDGS GLEPGWVDPRTWLSFQGPPGGPGIGPG SEVLGIS Sbjct 1 MAGHLASDFAFSPPPGGGDGSGGLEPGWVDPRTWLSFQGPPGGPGIGPGVGPGSEVLGIS 60 Query 237 PCPPAYEFCGGMAYCgpqvglglvpqvgvETLQPEGQAGARVESNSEGTSSEPCADRPNA 416 PCPP YEFCGG+AYCGPQVGLGLVP VG+ET QPEGQ+GA VE++SE +S PC RP Sbjct 61 PCPPPYEFCGGVAYCGPQVGLGLVPPVGLETSQPEGQSGAGVENDSEESSPGPCTARPIV 120 Query 417 -VKLEKVEPTPEESQDMKALQKELE 488 VKLEKVEP+PEESQD+KALQKELE Sbjct 121 PVKLEKVEPSPEESQDVKALQKELE 145 >ref|XP_001490158.1| PREDICTED: POU domain, class 5, transcription factor 1-like [Equus caballus] Length=360 Score = 141 bits (356), Expect = 8e-38 Identities = 93/122 (76%), Positives = 101/122 (83%), Gaps = 6/122 (5%) Frame = +3 Query 141 EPGWVDPRTWLSFQgppggpgigpg----SEVLGISPCPPAYEFCGGMAYCgpqvglglv 308 EPGWVDPRTWLSFQGPP G GIGPG +EV GI PCPP YEFCGGMAYCGPQVG+GLV Sbjct 26 EPGWVDPRTWLSFQGPPSGSGIGPGVGPGAEVWGIPPCPPPYEFCGGMAYCGPQVGVGLV 85 Query 309 pqvgvETLQPEGQAGARVESNSEGTSSEPCADRPNAVKL--EKVEPTPEESQDMKALQKE 482 PQ +ET QPEG+AGARVESNSEG S EPCA P AVK+ EK+E PEESQD+KALQK+ Sbjct 86 PQGSLETSQPEGEAGARVESNSEGASPEPCAAPPGAVKVDKEKLEQNPEESQDIKALQKD 145 Query 483 LE 488 LE Sbjct 146 LE 147 >ref|XP_001135162.1| PREDICTED: POU domain, class 5, transcription factor 1 isoform 2 [Pan troglodytes] Length=359 Score = 138 bits (348), Expect = 1e-36 Identities = 95/121 (79%), Positives = 101/121 (83%), Gaps = 5/121 (4%) Frame = +3 Query 141 EPGWVDPRTWLSFQgppggpgigpg----SEVLGISPCPPAYEFCGGMAYCgpqvglglv 308 EPGWVDPRTWLSFQGPPGGPGIGPG SEV GI PCPP YEFCGGMAYCGPQVG+GLV Sbjct 26 EPGWVDPRTWLSFQGPPGGPGIGPGVGPGSEVWGIPPCPPPYEFCGGMAYCGPQVGVGLV 85 Query 309 pqvgvETLQPEGQAGARVESNSEGTSSEPCADRPNAVKLE-KVEPTPEESQDMKALQKEL 485 PQ G+ET QPEG+AG VESNS+G S EPC P AVKLE K+E PEESQD+KALQKEL Sbjct 86 PQGGLETSQPEGEAGVGVESNSDGASPEPCTVTPGAVKLEKKLEQNPEESQDIKALQKEL 145 Query 486 E 488 E Sbjct 146 E 146 >ref|NP_002692.2| POU domain, class 5, transcription factor 1 isoform 1 [Homo sapiens] ref|NP_001238970.1| POU domain, class 5, transcription factor 1 [Pan troglodytes] Length=360 Score = 138 bits (347), Expect = 2e-36 Identities = 95/122 (78%), Positives = 101/122 (83%), Gaps = 6/122 (5%) Frame = +3 Query 141 EPGWVDPRTWLSFQgppggpgigpg----SEVLGISPCPPAYEFCGGMAYCgpqvglglv 308 EPGWVDPRTWLSFQGPPGGPGIGPG SEV GI PCPP YEFCGGMAYCGPQVG+GLV Sbjct 26 EPGWVDPRTWLSFQGPPGGPGIGPGVGPGSEVWGIPPCPPPYEFCGGMAYCGPQVGVGLV 85 Query 309 pqvgvETLQPEGQAGARVESNSEGTSSEPCADRPNAVKL--EKVEPTPEESQDMKALQKE 482 PQ G+ET QPEG+AG VESNS+G S EPC P AVKL EK+E PEESQD+KALQKE Sbjct 86 PQGGLETSQPEGEAGVGVESNSDGASPEPCTVTPGAVKLEKEKLEQNPEESQDIKALQKE 145 Query 483 LE 488 LE Sbjct 146 LE 147 >ref|XP_002809144.1| PREDICTED: POU domain, class 5, transcription factor 1-like [Pongo abelii] Length=360 Score = 137 bits (346), Expect = 2e-36 Identities = 94/122 (77%), Positives = 100/122 (82%), Gaps = 6/122 (5%) Frame = +3 Query 141 EPGWVDPRTWLSFQgppggpgigpg----SEVLGISPCPPAYEFCGGMAYCgpqvglglv 308 EPGWVDPRTWLSFQGPPGGPGIGPG SEV GI PCPP YEFCGGMAYCGPQVG+GLV Sbjct 26 EPGWVDPRTWLSFQGPPGGPGIGPGVGPGSEVWGIPPCPPPYEFCGGMAYCGPQVGVGLV 85 Query 309 pqvgvETLQPEGQAGARVESNSEGTSSEPCADRPNAVKL--EKVEPTPEESQDMKALQKE 482 PQ +ET QPEG+AG VESNS+G S EPC P AVKL EK+E PEESQD+KALQKE Sbjct 86 PQGSLETSQPEGEAGVGVESNSDGASPEPCTVPPGAVKLEKEKLEQNPEESQDIKALQKE 145 Query 483 LE 488 LE Sbjct 146 LE 147 >ref|XP_528230.1| PREDICTED: putative POU domain, class 5, transcription factor 1B [Pan troglodytes] Length=359 Score = 133 bits (334), Expect = 1e-34 Identities = 93/122 (76%), Positives = 98/122 (80%), Gaps = 6/122 (5%) Frame = +3 Query 141 EPGWVDPRTWLSFQgppggpgigpg----SEVLGISPCPPAYEFCGGMAYCgpqvglglv 308 EPGWVDP TWL FQGPPGGPGIGPG SEV GI PCPP YEFCGGMAYCGPQVG GLV Sbjct 26 EPGWVDPLTWLRFQGPPGGPGIGPGVGPGSEVWGIPPCPPPYEFCGGMAYCGPQVGAGLV 85 Query 309 pqvgvETLQPEGQAGARVESNSEGTSSEPCADRPNAVKL--EKVEPTPEESQDMKALQKE 482 PQ G+ET QPEG+AG VESNS+G S EPC P AVKL EK+E PEESQD+KALQKE Sbjct 86 PQGGLETSQPEGEAGVGVESNSDGASPEPCTVPPGAVKLEKEKLEQNPEESQDIKALQKE 145 Query 483 LE 488 LE Sbjct 146 LE 147 >ref|XP_002746363.1| PREDICTED: POU domain, class 5, transcription factor 1-like [Callithrix jacchus] Length=360 Score = 133 bits (334), Expect = 1e-34 Identities = 94/122 (77%), Positives = 100/122 (82%), Gaps = 6/122 (5%) Frame = +3 Query 141 EPGWVDPRTWLSFQgppggpgigpg----SEVLGISPCPPAYEFCGGMAYCgpqvglglv 308 E GWVDPRTWLSFQGPPGGPGIGPG +EV GI PCPP YEFCGGMAYCGPQVG+GLV Sbjct 26 ETGWVDPRTWLSFQGPPGGPGIGPGVGPGAEVWGIPPCPPPYEFCGGMAYCGPQVGVGLV 85 Query 309 pqvgvETLQPEGQAGARVESNSEGTSSEPCADRPNAVKL--EKVEPTPEESQDMKALQKE 482 PQ G+ET QPEG+AGA VESNSEG S EPC P AVKL EK+E EESQD+KALQKE Sbjct 86 PQGGLETSQPEGEAGAGVESNSEGASPEPCTIPPGAVKLEKEKLEQNTEESQDIKALQKE 145 Query 483 LE 488 LE Sbjct 146 LE 147 >ref|NP_001108427.1| POU domain, class 5, transcription factor 1 [Macaca mulatta] Length=360 Score = 133 bits (334), Expect = 1e-34 Identities = 94/122 (77%), Positives = 100/122 (82%), Gaps = 6/122 (5%) Frame = +3 Query 141 EPGWVDPRTWLSFQgppggpgigpg----SEVLGISPCPPAYEFCGGMAYCgpqvglglv 308 E GWVDPRTWLSFQGPPGGPGIGPG SEV GI PCPP YEFCGGMAYCGPQVG+GLV Sbjct 26 ETGWVDPRTWLSFQGPPGGPGIGPGVGPGSEVWGIPPCPPPYEFCGGMAYCGPQVGVGLV 85 Query 309 pqvgvETLQPEGQAGARVESNSEGTSSEPCADRPNAVKL--EKVEPTPEESQDMKALQKE 482 PQ G+ET QPEG+AGA VESNS+G S EPC AVKL EK+E PEESQD+KALQKE Sbjct 86 PQGGLETSQPEGEAGAGVESNSDGASPEPCTVPTGAVKLEKEKLEQNPEESQDIKALQKE 145 Query 483 LE 488 LE Sbjct 146 LE 147 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 104017620564 Database: NCBI Protein Reference Sequences Posted date: Mar 18, 2012 8:41 PM Number of letters in database: 4,140,237,112 Number of sequences in database: 11,879,989 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 12 Window for multiple hits: 40