TBLASTN 2.2.26+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: minirefseq_mrna 23 sequences; 67,750 total letters Query= random_s00 Length=32 ***** No hits found ***** Effective search space used: 0 Query= gi|16080617|ref|NP_391444.1| membrane bound lipoprotein [Bacillus subtilis subsp. subtilis str. 168] Length=102 Score E Sequences producing significant alignments: (Bits) Value gi|145479850|ref|XM_001425911.1| Paramecium tetraurelia hypothe... 34.7 1e-05 gi|72012412|ref|XM_777959.1| PREDICTED: Strongylocentrotus purp... 31.6 1e-04 gi|115975252|ref|XM_001180111.1| PREDICTED: Strongylocentrotus ... 31.6 1e-04 > gi|145479850|ref|XM_001425911.1| Paramecium tetraurelia hypothetical protein (GSPATT00004923001) partial mRNA Length=4632 Score = 34.7 bits (78), Expect = 1e-05, Method: Composition-based stats. Identities = 15/43 (35%), Positives = 26/43 (60%), Gaps = 0/43 (0%) Frame = +1 Query 31 PDSNIETKEGTYVGLADTHTIEVTVDNEPVSLDITEESTSDLD 73 P + TK+GT +GL HTI + + +SL++ E++ D+D Sbjct 1744 PKTATGTKKGTIIGLLSIHTILFILTSHALSLEVKEQT*KDID 1872 > gi|72012412|ref|XM_777959.1| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC577746 (LOC577746), mRNA Length=1593 Score = 31.6 bits (70), Expect = 1e-04, Method: Composition-based stats. Identities = 20/59 (34%), Positives = 29/59 (49%), Gaps = 8/59 (14%) Frame = +1 Query 44 GLADTHTIEVTVDNEPVSLDITEESTSDLDKFNSG--------DKVTITYEKNDEGQLL 94 GL HT+ + V + LD+TEE ++LD+F S K + YE+N Q L Sbjct 1057 GLVPDHTLILPVGHYQSMLDLTEEVQTELDQFKSALRKYYLSKGKTCVIYERNFRTQHL 1233 > gi|115975252|ref|XM_001180111.1| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC577746 (LOC577746), mRNA Length=1593 Score = 31.6 bits (70), Expect = 1e-04, Method: Composition-based stats. Identities = 20/59 (34%), Positives = 29/59 (49%), Gaps = 8/59 (14%) Frame = +1 Query 44 GLADTHTIEVTVDNEPVSLDITEESTSDLDKFNSG--------DKVTITYEKNDEGQLL 94 GL HT+ + V + LD+TEE ++LD+F S K + YE+N Q L Sbjct 1057 GLVPDHTLILPVGHYQSMLDLTEEVQTELDQFKSALRKYYLSKGKTCVIYERNFRTQHL 1233 Lambda K H 0.302 0.125 0.332 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1205400 Query= gi|11464971:4-101 pleckstrin [Mus musculus] Length=98 Score E Sequences producing significant alignments: (Bits) Value gi|350596019|ref|XM_003360601.2| PREDICTED: Sus scrofa pleckstr... 199 2e-67 gi|301779869|ref|XM_002925302.1| PREDICTED: Ailuropoda melanole... 202 2e-67 gi|296223671|ref|XM_002757683.1| PREDICTED: Callithrix jacchus ... 202 4e-67 gi|338714227|ref|XM_001492113.3| PREDICTED: Equus caballus plec... 202 2e-66 gi|365982352|ref|XM_003667962.1| Naumovozyma dairenensis CBS 42... 19.6 1.7 gi|94721341|ref|NM_001040441.1| Homo sapiens zinc finger and BT... 17.7 6.3 gi|332865370|ref|XM_527768.3| PREDICTED: Pan troglodytes zinc f... 17.3 8.7 gi|332865372|ref|XM_003318468.1| PREDICTED: Pan troglodytes zin... 17.3 8.7 > gi|350596019|ref|XM_003360601.2| PREDICTED: Sus scrofa pleckstrin-like (LOC100626968), mRNA Length=772 Score = 199 bits (506), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 94/98 (96%), Positives = 96/98 (98%), Gaps = 0/98 (0%) Frame = +2 Query 1 KRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFG 60 KRIREGYLVKKGS+FNTWKPMWV+LLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFG Sbjct 95 KRIREGYLVKKGSMFNTWKPMWVILLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFG 274 Query 61 KRMFVLKITTTKQQDHFFQAAFLEERDAWVRDIKKAIK 98 KRMFV KITTTKQQDHFFQAAFLEERD WVRDIKKAIK Sbjct 275 KRMFVFKITTTKQQDHFFQAAFLEERDGWVRDIKKAIK 388 Score = 32.7 bits (73), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 21/71 (30%), Positives = 33/71 (46%), Gaps = 4/71 (6%) Frame = +2 Query 30 IEFYKKKSDNSPKGMIPLKGSTLTS-PCQDFGKRMFVLK---ITTTKQQDHFFQAAFLEE 85 + +Y P G I L+G +TS GK F+ + T + +F QAA +E Sbjct 542 LHYYDPAGGEDPLGAIHLRGCVVTSVESNTDGKNGFLWERAXXITADEVHYFLQAANPKE 721 Query 86 RDAWVRDIKKA 96 R W++ I+ A Sbjct 722 RTEWIKAIQVA 754 > gi|301779869|ref|XM_002925302.1| PREDICTED: Ailuropoda melanoleuca pleckstrin-like (LOC100466932), mRNA Length=1144 Score = 202 bits (515), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 96/98 (98%), Positives = 97/98 (99%), Gaps = 0/98 (0%) Frame = +3 Query 1 KRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFG 60 KRIREGYLVK+GSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFG Sbjct 78 KRIREGYLVKRGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFG 257 Query 61 KRMFVLKITTTKQQDHFFQAAFLEERDAWVRDIKKAIK 98 KRMFV KITTTKQQDHFFQAAFLEERDAWVRDIKKAIK Sbjct 258 KRMFVFKITTTKQQDHFFQAAFLEERDAWVRDIKKAIK 371 Score = 45.1 bits (105), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 6/100 (6%) Frame = +3 Query 3 IREGYLVKKGSVFNTWKPMWVVLLEDG--IEFYKKKSDNSPKGMIPLKGSTLTS----PC 56 I++G L+K+G WK +L ED + +Y P G I L+G +TS P Sbjct 804 IKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGGEDPLGAIHLRGCVVTSVESNPD 983 Query 57 QDFGKRMFVLKITTTKQQDHFFQAAFLEERDAWVRDIKKA 96 + + +I T + +F QAA +ER W++ I+ A Sbjct 984 VRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQVA 1103 > gi|296223671|ref|XM_002757683.1| PREDICTED: Callithrix jacchus pleckstrin (PLEK), mRNA Length=1183 Score = 202 bits (515), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 96/98 (98%), Positives = 97/98 (99%), Gaps = 0/98 (0%) Frame = +2 Query 1 KRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFG 60 KRIREGYLVKKGS+FNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFG Sbjct 161 KRIREGYLVKKGSMFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFG 340 Query 61 KRMFVLKITTTKQQDHFFQAAFLEERDAWVRDIKKAIK 98 KRMFV KITTTKQQDHFFQAAFLEERDAWVRDIKKAIK Sbjct 341 KRMFVFKITTTKQQDHFFQAAFLEERDAWVRDIKKAIK 454 Score = 45.1 bits (105), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 6/100 (6%) Frame = +2 Query 3 IREGYLVKKGSVFNTWKPMWVVLLEDG--IEFYKKKSDNSPKGMIPLKGSTLTSPCQDFG 60 I++G L+K+G WK +L ED + +Y P G I L+G +TS + Sbjct 866 IKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGGEDPLGAIHLRGCVVTSVESNSD 1045 Query 61 KRMF----VLKITTTKQQDHFFQAAFLEERDAWVRDIKKA 96 R + +I T + +F QAA +ER W++ I+ A Sbjct 1046 GRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQVA 1165 > gi|338714227|ref|XM_001492113.3| PREDICTED: Equus caballus pleckstrin-like (LOC100051039), mRNA Length=1390 Score = 202 bits (515), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 96/98 (98%), Positives = 97/98 (99%), Gaps = 0/98 (0%) Frame = +2 Query 1 KRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFG 60 KRIREGYLVK+GSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFG Sbjct 173 KRIREGYLVKRGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFG 352 Query 61 KRMFVLKITTTKQQDHFFQAAFLEERDAWVRDIKKAIK 98 KRMFV KITTTKQQDHFFQAAFLEERDAWVRDIKKAIK Sbjct 353 KRMFVFKITTTKQQDHFFQAAFLEERDAWVRDIKKAIK 466 Score = 46.6 bits (109), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 6/100 (6%) Frame = +2 Query 3 IREGYLVKKGSVFNTWKPMWVVLLEDG--IEFYKKKSDNSPKGMIPLKGSTLTS----PC 56 I++G L+K+G WK VL ED + +Y P G I L+G +TS P Sbjct 899 IKQGCLLKQGHRRKNWKVRKFVLREDPAYVHYYDPAGGEEPLGAIHLRGCVVTSVEGNPD 1078 Query 57 QDFGKRMFVLKITTTKQQDHFFQAAFLEERDAWVRDIKKA 96 + + +I T + +F QAA +ER W++ I+ A Sbjct 1079 GKKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQVA 1198 > gi|365982352|ref|XM_003667962.1| Naumovozyma dairenensis CBS 421 hypothetical protein (NDAI0A06120), mRNA Length=4932 Score = 19.6 bits (39), Expect = 1.7, Method: Compositional matrix adjust. Identities = 16/52 (31%), Positives = 23/52 (44%), Gaps = 9/52 (17%) Frame = +1 Query 12 GSVFNTWKPMWVVLL---------EDGIEFYKKKSDNSPKGMIPLKGSTLTS 54 GS F TW +++ +L E E K D + KG++ L S TS Sbjct 3181 GSCFPTWDLIFIEVLNPFLKEKLWEADNEEISKFVDLTLKGLVDLYPSHFTS 3336 Lambda K H 0.321 0.137 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1119300 Database: minirefseq_mrna Posted date: Jun 9, 2012 2:05 PM Number of letters in database: 67,750 Number of sequences in database: 23 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40