This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by RNAforester configure 1.5, which was
generated by GNU Autoconf 2.61.  Invocation command line was

  $ ./configure --prefix=/usr/local --cache-file=/dev/null --srcdir=.

## --------- ##
## Platform. ##
## --------- ##

hostname = deneb
uname -m = sun4u
uname -r = 5.10
uname -s = SunOS
uname -v = Generic_139555-08

/usr/bin/uname -p = sparc
/bin/uname -X     = System = SunOS
Node = deneb
Release = 5.10
KernelID = Generic_139555-08
Machine = sun4u
BusType = <unknown>
Serial = <unknown>
Users = <unknown>
OEM# = 0
Origin# = 1
NumCPU = 4

/bin/arch              = sun4
/usr/bin/arch -k       = sun4u
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /home/psgendb/local/script
PATH: /home/psgendb/local/bin-solaris-sparc
PATH: /usr/sfw/bin
PATH: /opt/SUNWspro/bin
PATH: /usr/bin
PATH: /usr/local/bin
PATH: /opt/csw/bin
PATH: /usr/ccs/bin
PATH: /usr/local/adminsys/bin
PATH: /usr/local/sybase/client/bin
PATH: /usr/X11/bin
PATH: /usr/dt/bin
PATH: /usr/openwin/bin
PATH: /usr/openwin/demo
PATH: /home/psgendb/script
PATH: /home/psgendb/bin-solaris-sparc
PATH: /home/psgendb/local/pkg/EMBOSS/solaris-sparc/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:1791: checking for a BSD-compatible install
configure:1847: result: /opt/csw/bin/ginstall -c
configure:1858: checking whether build environment is sane
configure:1901: result: yes
configure:1929: checking for a thread-safe mkdir -p
configure:1968: result: /opt/csw/bin/gmkdir -p
configure:1981: checking for gawk
configure:1997: found /opt/csw/bin/gawk
configure:2008: result: gawk
configure:2019: checking whether make sets $(MAKE)
configure:2040: result: yes
configure:2290: checking for g++
configure:2306: found /usr/sfw/bin/g++
configure:2317: result: g++
configure:2348: checking for C++ compiler version
configure:2355: g++ --version >&5
g++ (GCC) 3.4.3 (csl-sol210-3_4-branch+sol_rpath)
Copyright (C) 2004 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:2358: $? = 0
configure:2365: g++ -v >&5
Reading specs from /usr/sfw/lib/gcc/sparc-sun-solaris2.10/3.4.3/specs
Configured with: /sfw10/builds/build/sfw10-patch/usr/src/cmd/gcc/gcc-3.4.3/configure --prefix=/usr/sfw --with-as=/usr/ccs/bin/as --without-gnu-as --with-ld=/usr/ccs/bin/ld --without-gnu-ld --enable-languages=c,c++ --enable-shared
Thread model: posix
gcc version 3.4.3 (csl-sol210-3_4-branch+sol_rpath)
configure:2368: $? = 0
configure:2375: g++ -V >&5
g++: `-V' option must have argument
configure:2378: $? = 1
configure:2401: checking for C++ compiler default output file name
configure:2428: g++    conftest.cpp  >&5
configure:2431: $? = 0
configure:2469: result: a.out
configure:2486: checking whether the C++ compiler works
configure:2496: ./a.out
configure:2499: $? = 0
configure:2516: result: yes
configure:2523: checking whether we are cross compiling
configure:2525: result: no
configure:2528: checking for suffix of executables
configure:2535: g++ -o conftest    conftest.cpp  >&5
configure:2538: $? = 0
configure:2562: result: 
configure:2568: checking for suffix of object files
configure:2594: g++ -c   conftest.cpp >&5
configure:2597: $? = 0
configure:2620: result: o
configure:2624: checking whether we are using the GNU C++ compiler
configure:2653: g++ -c   conftest.cpp >&5
configure:2659: $? = 0
configure:2676: result: yes
configure:2681: checking whether g++ accepts -g
configure:2711: g++ -c -g  conftest.cpp >&5
configure:2717: $? = 0
configure:2816: result: yes
configure:2850: checking for style of include used by make
configure:2878: result: GNU
configure:2903: checking dependency style of g++
configure:2994: result: gcc3
configure:3057: checking for gcc
configure:3073: found /usr/sfw/bin/gcc
configure:3084: result: gcc
configure:3322: checking for C compiler version
configure:3329: gcc --version >&5
gcc (GCC) 3.4.3 (csl-sol210-3_4-branch+sol_rpath)
Copyright (C) 2004 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3332: $? = 0
configure:3339: gcc -v >&5
Reading specs from /usr/sfw/lib/gcc/sparc-sun-solaris2.10/3.4.3/specs
Configured with: /sfw10/builds/build/sfw10-patch/usr/src/cmd/gcc/gcc-3.4.3/configure --prefix=/usr/sfw --with-as=/usr/ccs/bin/as --without-gnu-as --with-ld=/usr/ccs/bin/ld --without-gnu-ld --enable-languages=c,c++ --enable-shared
Thread model: posix
gcc version 3.4.3 (csl-sol210-3_4-branch+sol_rpath)
configure:3342: $? = 0
configure:3349: gcc -V >&5
gcc: `-V' option must have argument
configure:3352: $? = 1
configure:3355: checking whether we are using the GNU C compiler
configure:3384: gcc -c   conftest.c >&5
configure:3390: $? = 0
configure:3407: result: yes
configure:3412: checking whether gcc accepts -g
configure:3442: gcc -c -g  conftest.c >&5
configure:3448: $? = 0
configure:3547: result: yes
configure:3564: checking for gcc option to accept ISO C89
configure:3638: gcc  -c -g -O2  conftest.c >&5
configure:3644: $? = 0
configure:3667: result: none needed
configure:3687: checking dependency style of gcc
configure:3778: result: gcc3
configure:3817: result: using (to be built) libRNA.a in ../lib
configure:3830: checking for gdImageLine in -lgd
configure:3865: g++ -o conftest -g -O2 -Ig2-0.70/src/ -Lg2-0.70/  -L../../lib  conftest.cpp -lgd  -lRNA  >&5
ld: fatal: library -lgd: not found
ld: fatal: library -lRNA: not found
ld: fatal: File processing errors. No output written to conftest
collect2: ld returned 1 exit status
configure:3871: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "RNAforester"
| #define PACKAGE_TARNAME "RNAforester"
| #define PACKAGE_VERSION "1.5"
| #define PACKAGE_STRING "RNAforester 1.5"
| #define PACKAGE_BUGREPORT "mhoechsm@techfak.uni-bielefeld.de"
| #define PACKAGE "RNAforester"
| #define VERSION "1.5"
| #define HAVE_LIBRNA 1
| /* end confdefs.h.  */
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char gdImageLine ();
| int
| main ()
| {
| return gdImageLine ();
|   ;
|   return 0;
| }
configure:3889: result: no
configure:3906: checking how to run the C++ preprocessor
configure:3942: g++ -E -Ig2-0.70/src/ -Lg2-0.70/  conftest.cpp
configure:3948: $? = 0
configure:3979: g++ -E -Ig2-0.70/src/ -Lg2-0.70/  conftest.cpp
conftest.cpp:11:28: ac_nonexistent.h: No such file or directory
configure:3985: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "RNAforester"
| #define PACKAGE_TARNAME "RNAforester"
| #define PACKAGE_VERSION "1.5"
| #define PACKAGE_STRING "RNAforester 1.5"
| #define PACKAGE_BUGREPORT "mhoechsm@techfak.uni-bielefeld.de"
| #define PACKAGE "RNAforester"
| #define VERSION "1.5"
| #define HAVE_LIBRNA 1
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:4018: result: g++ -E
configure:4047: g++ -E -Ig2-0.70/src/ -Lg2-0.70/  conftest.cpp
configure:4053: $? = 0
configure:4084: g++ -E -Ig2-0.70/src/ -Lg2-0.70/  conftest.cpp
conftest.cpp:11:28: ac_nonexistent.h: No such file or directory
configure:4090: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "RNAforester"
| #define PACKAGE_TARNAME "RNAforester"
| #define PACKAGE_VERSION "1.5"
| #define PACKAGE_STRING "RNAforester 1.5"
| #define PACKAGE_BUGREPORT "mhoechsm@techfak.uni-bielefeld.de"
| #define PACKAGE "RNAforester"
| #define VERSION "1.5"
| #define HAVE_LIBRNA 1
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:4128: checking for grep that handles long lines and -e
configure:4202: result: /usr/sfw/bin/ggrep
configure:4207: checking for egrep
configure:4285: result: /usr/sfw/bin/ggrep -E
configure:4290: checking for ANSI C header files
configure:4320: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/  conftest.cpp >&5
configure:4326: $? = 0
configure:4425: g++ -o conftest -g -O2 -Ig2-0.70/src/ -Lg2-0.70/  -L../../lib  conftest.cpp -lRNA  >&5
ld: fatal: library -lRNA: not found
ld: fatal: File processing errors. No output written to conftest
collect2: ld returned 1 exit status
configure:4428: $? = 1
configure: program exited with status 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "RNAforester"
| #define PACKAGE_TARNAME "RNAforester"
| #define PACKAGE_VERSION "1.5"
| #define PACKAGE_STRING "RNAforester 1.5"
| #define PACKAGE_BUGREPORT "mhoechsm@techfak.uni-bielefeld.de"
| #define PACKAGE "RNAforester"
| #define VERSION "1.5"
| #define HAVE_LIBRNA 1
| /* end confdefs.h.  */
| #include <ctype.h>
| #include <stdlib.h>
| #if ((' ' & 0x0FF) == 0x020)
| # define ISLOWER(c) ('a' <= (c) && (c) <= 'z')
| # define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c))
| #else
| # define ISLOWER(c) 		   (('a' <= (c) && (c) <= 'i') 		     || ('j' <= (c) && (c) <= 'r') 		     || ('s' <= (c) && (c) <= 'z'))
| # define TOUPPER(c) (ISLOWER(c) ? ((c) | 0x40) : (c))
| #endif
| 
| #define XOR(e, f) (((e) && !(f)) || (!(e) && (f)))
| int
| main ()
| {
|   int i;
|   for (i = 0; i < 256; i++)
|     if (XOR (islower (i), ISLOWER (i))
| 	|| toupper (i) != TOUPPER (i))
|       return 2;
|   return 0;
| }
configure:4454: result: no
configure:4478: checking for sys/types.h
configure:4499: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/  conftest.cpp >&5
configure:4505: $? = 0
configure:4521: result: yes
configure:4478: checking for sys/stat.h
configure:4499: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/  conftest.cpp >&5
configure:4505: $? = 0
configure:4521: result: yes
configure:4478: checking for stdlib.h
configure:4499: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/  conftest.cpp >&5
configure:4505: $? = 0
configure:4521: result: yes
configure:4478: checking for string.h
configure:4499: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/  conftest.cpp >&5
configure:4505: $? = 0
configure:4521: result: yes
configure:4478: checking for memory.h
configure:4499: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/  conftest.cpp >&5
configure:4505: $? = 0
configure:4521: result: yes
configure:4478: checking for strings.h
configure:4499: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/  conftest.cpp >&5
configure:4505: $? = 0
configure:4521: result: yes
configure:4478: checking for inttypes.h
configure:4499: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/  conftest.cpp >&5
configure:4505: $? = 0
configure:4521: result: yes
configure:4478: checking for stdint.h
configure:4499: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/  conftest.cpp >&5
configure:4505: $? = 0
configure:4521: result: yes
configure:4478: checking for unistd.h
configure:4499: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/  conftest.cpp >&5
configure:4505: $? = 0
configure:4521: result: yes
configure:4543: checking g2.h usability
configure:4560: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/  conftest.cpp >&5
configure:4566: $? = 0
configure:4580: result: yes
configure:4584: checking g2.h presence
configure:4599: g++ -E -Ig2-0.70/src/ -Lg2-0.70/  conftest.cpp
configure:4605: $? = 0
configure:4619: result: yes
configure:4652: checking for g2.h
configure:4659: result: yes
configure:4676: checking for an ANSI C-conforming const
configure:4751: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/  conftest.cpp >&5
configure:4757: $? = 0
configure:4772: result: yes
configure:4782: checking for inline
configure:4808: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/  conftest.cpp >&5
configure:4814: $? = 0
configure:4832: result: inline
configure:4851: checking for size_t
configure:4881: g++ -c -g -O2 -Ig2-0.70/src/ -Lg2-0.70/  conftest.cpp >&5
configure:4887: $? = 0
configure:4902: result: yes
configure:5053: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by RNAforester config.status 1.5, which was
generated by GNU Autoconf 2.61.  Invocation command line was

  CONFIG_FILES    = 
  CONFIG_HEADERS  = 
  CONFIG_LINKS    = 
  CONFIG_COMMANDS = 
  $ ./config.status 

on deneb

config.status:644: creating Makefile
config.status:644: creating src/Makefile
config.status:644: creating man/Makefile
config.status:644: creating config.h
config.status:917: executing depfiles commands
configure:6333: === configuring in g2-0.70 (/home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/RNAforester/g2-0.70)
configure:6436: running /bin/bash ./configure '--prefix=/usr/local'  --cache-file=/dev/null --srcdir=.

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_c_compiler_gnu=yes
ac_cv_c_const=yes
ac_cv_c_inline=inline
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_header_g2_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=no
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_lib_gd_gdImageLine=no
ac_cv_objext=o
ac_cv_path_EGREP='/usr/sfw/bin/ggrep -E'
ac_cv_path_GREP=/usr/sfw/bin/ggrep
ac_cv_path_install='/opt/csw/bin/ginstall -c'
ac_cv_path_mkdir=/opt/csw/bin/gmkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_CXXCPP='g++ -E'
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_type_size_t=yes
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/RNAforester/missing --run aclocal-1.10'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/RNAforester/missing --run tar'
AUTOCONF='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/RNAforester/missing --run autoconf'
AUTOHEADER='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/RNAforester/missing --run autoheader'
AUTOMAKE='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/RNAforester/missing --run automake-1.10'
AWK='gawk'
CC='gcc'
CCDEPMODE='depmode=gcc3'
CFLAGS='-g -O2'
CPPFLAGS='	-I../g2-0.70/include/'
CXX='g++'
CXXCPP='g++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-g -O2'
CYGPATH_W='echo'
DEFS='-DHAVE_CONFIG_H'
DEPDIR='.deps'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/usr/sfw/bin/ggrep -E'
EXEEXT=''
GREP='/usr/sfw/bin/ggrep'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LDFLAGS='-L../g2-0.70 -L../../lib '
LIBOBJS=''
LIBS='-lg2 -lRNA '
LTLIBOBJS=''
MAKEINFO='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/RNAforester/missing --run makeinfo'
OBJEXT='o'
PACKAGE='RNAforester'
PACKAGE_BUGREPORT='mhoechsm@techfak.uni-bielefeld.de'
PACKAGE_NAME='RNAforester'
PACKAGE_STRING='RNAforester 1.5'
PACKAGE_TARNAME='RNAforester'
PACKAGE_VERSION='1.5'
PATH_SEPARATOR=':'
SET_MAKE=''
SHELL='/bin/bash'
STRIP=''
VERSION='1.5'
ac_ct_CC='gcc'
ac_ct_CXX='g++'
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__quote=''
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
bindir='${exec_prefix}/bin'
build_alias=''
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host_alias=''
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='$(SHELL) /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/RNAforester/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='/opt/csw/bin/gmkdir -p'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr/local'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=' g2-0.70'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

#define PACKAGE_NAME "RNAforester"
#define PACKAGE_TARNAME "RNAforester"
#define PACKAGE_VERSION "1.5"
#define PACKAGE_STRING "RNAforester 1.5"
#define PACKAGE_BUGREPORT "mhoechsm@techfak.uni-bielefeld.de"
#define PACKAGE "RNAforester"
#define VERSION "1.5"
#define HAVE_LIBRNA 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_LIBG2 1

configure: exit 0