This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by ViennaRNA configure 1.7.2, which was
generated by GNU Autoconf 2.61.  Invocation command line was

  $ ./configure 

## --------- ##
## Platform. ##
## --------- ##

hostname = deneb
uname -m = sun4u
uname -r = 5.10
uname -s = SunOS
uname -v = Generic_139555-08

/usr/bin/uname -p = sparc
/bin/uname -X     = System = SunOS
Node = deneb
Release = 5.10
KernelID = Generic_139555-08
Machine = sun4u
BusType = <unknown>
Serial = <unknown>
Users = <unknown>
OEM# = 0
Origin# = 1
NumCPU = 4

/bin/arch              = sun4
/usr/bin/arch -k       = sun4u
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /home/psgendb/local/script
PATH: /home/psgendb/local/bin-solaris-sparc
PATH: /usr/sfw/bin
PATH: /opt/SUNWspro/bin
PATH: /usr/bin
PATH: /usr/local/bin
PATH: /opt/csw/bin
PATH: /usr/ccs/bin
PATH: /usr/local/adminsys/bin
PATH: /usr/local/sybase/client/bin
PATH: /usr/X11/bin
PATH: /usr/dt/bin
PATH: /usr/openwin/bin
PATH: /usr/openwin/demo
PATH: /home/psgendb/script
PATH: /home/psgendb/bin-solaris-sparc
PATH: /home/psgendb/local/pkg/EMBOSS/solaris-sparc/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:1817: checking for a BSD-compatible install
configure:1873: result: /opt/csw/bin/ginstall -c
configure:1884: checking whether build environment is sane
configure:1927: result: yes
configure:1955: checking for a thread-safe mkdir -p
configure:1994: result: /opt/csw/bin/gmkdir -p
configure:2007: checking for gawk
configure:2023: found /opt/csw/bin/gawk
configure:2034: result: gawk
configure:2045: checking whether make sets $(MAKE)
configure:2066: result: yes
configure:2255: checking if malloc debugging is wanted
configure:2275: result: no
configure:2326: checking build system type
configure:2344: result: sparc-sun-solaris2.10
configure:2366: checking host system type
configure:2381: result: sparc-sun-solaris2.10
configure:2452: checking for gcc
configure:2468: found /usr/sfw/bin/gcc
configure:2479: result: gcc
configure:2717: checking for C compiler version
configure:2724: gcc --version >&5
gcc (GCC) 3.4.3 (csl-sol210-3_4-branch+sol_rpath)
Copyright (C) 2004 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:2727: $? = 0
configure:2734: gcc -v >&5
Reading specs from /usr/sfw/lib/gcc/sparc-sun-solaris2.10/3.4.3/specs
Configured with: /sfw10/builds/build/sfw10-patch/usr/src/cmd/gcc/gcc-3.4.3/configure --prefix=/usr/sfw --with-as=/usr/ccs/bin/as --without-gnu-as --with-ld=/usr/ccs/bin/ld --without-gnu-ld --enable-languages=c,c++ --enable-shared
Thread model: posix
gcc version 3.4.3 (csl-sol210-3_4-branch+sol_rpath)
configure:2737: $? = 0
configure:2744: gcc -V >&5
gcc: `-V' option must have argument
configure:2747: $? = 1
configure:2770: checking for C compiler default output file name
configure:2797: gcc    conftest.c  >&5
configure:2800: $? = 0
configure:2838: result: a.out
configure:2855: checking whether the C compiler works
configure:2865: ./a.out
configure:2868: $? = 0
configure:2885: result: yes
configure:2892: checking whether we are cross compiling
configure:2894: result: no
configure:2897: checking for suffix of executables
configure:2904: gcc -o conftest    conftest.c  >&5
configure:2907: $? = 0
configure:2931: result: 
configure:2937: checking for suffix of object files
configure:2963: gcc -c   conftest.c >&5
configure:2966: $? = 0
configure:2989: result: o
configure:2993: checking whether we are using the GNU C compiler
configure:3022: gcc -c   conftest.c >&5
configure:3028: $? = 0
configure:3045: result: yes
configure:3050: checking whether gcc accepts -g
configure:3080: gcc -c -g  conftest.c >&5
configure:3086: $? = 0
configure:3185: result: yes
configure:3202: checking for gcc option to accept ISO C89
configure:3276: gcc  -c -g -O2  conftest.c >&5
configure:3282: $? = 0
configure:3305: result: none needed
configure:3334: checking for style of include used by make
configure:3362: result: GNU
configure:3387: checking dependency style of gcc
configure:3478: result: gcc3
configure:3496: checking whether gcc accepts -fpic
configure:3522: gcc -c -fpic  conftest.c >&5
configure:3528: $? = 0
configure:3543: result: yes
configure:3577: checking for a BSD-compatible install
configure:3633: result: /opt/csw/bin/ginstall -c
configure:3687: checking for ranlib
configure:3703: found /usr/ccs/bin/ranlib
configure:3714: result: ranlib
configure:3741: checking whether gcc and cc understand -c and -o together
configure:3776: gcc -c conftest.c -o conftest2.o >&5
configure:3779: $? = 0
configure:3785: gcc -c conftest.c -o conftest2.o >&5
configure:3788: $? = 0
configure:3799: cc -c conftest.c >&5
configure:3802: $? = 0
configure:3810: cc -c conftest.c -o conftest2.o >&5
configure:3813: $? = 0
configure:3819: cc -c conftest.c -o conftest2.o >&5
configure:3822: $? = 0
configure:3840: result: yes
configure:3855: checking for perl
configure:3873: found /usr/bin/perl
configure:3885: result: /usr/bin/perl
configure:3977: checking how to run the C preprocessor
configure:4017: gcc -E  conftest.c
configure:4023: $? = 0
configure:4054: gcc -E  conftest.c
conftest.c:11:28: ac_nonexistent.h: No such file or directory
configure:4060: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "ViennaRNA"
| #define PACKAGE_TARNAME "ViennaRNA"
| #define PACKAGE_VERSION "1.7.2"
| #define PACKAGE_STRING "ViennaRNA 1.7.2"
| #define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at"
| #define PACKAGE "ViennaRNA"
| #define VERSION "1.7.2"
| #define UNUSED __attribute__ ((unused))
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:4093: result: gcc -E
configure:4122: gcc -E  conftest.c
configure:4128: $? = 0
configure:4159: gcc -E  conftest.c
conftest.c:11:28: ac_nonexistent.h: No such file or directory
configure:4165: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "ViennaRNA"
| #define PACKAGE_TARNAME "ViennaRNA"
| #define PACKAGE_VERSION "1.7.2"
| #define PACKAGE_STRING "ViennaRNA 1.7.2"
| #define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at"
| #define PACKAGE "ViennaRNA"
| #define VERSION "1.7.2"
| #define UNUSED __attribute__ ((unused))
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:4203: checking for grep that handles long lines and -e
configure:4277: result: /usr/sfw/bin/ggrep
configure:4282: checking for egrep
configure:4360: result: /usr/sfw/bin/ggrep -E
configure:4365: checking for ANSI C header files
configure:4395: gcc -c -g -O2  conftest.c >&5
configure:4401: $? = 0
configure:4500: gcc -o conftest -g -O2   conftest.c  >&5
configure:4503: $? = 0
configure:4509: ./conftest
configure:4512: $? = 0
configure:4529: result: yes
configure:4553: checking for sys/types.h
configure:4574: gcc -c -g -O2  conftest.c >&5
configure:4580: $? = 0
configure:4596: result: yes
configure:4553: checking for sys/stat.h
configure:4574: gcc -c -g -O2  conftest.c >&5
configure:4580: $? = 0
configure:4596: result: yes
configure:4553: checking for stdlib.h
configure:4574: gcc -c -g -O2  conftest.c >&5
configure:4580: $? = 0
configure:4596: result: yes
configure:4553: checking for string.h
configure:4574: gcc -c -g -O2  conftest.c >&5
configure:4580: $? = 0
configure:4596: result: yes
configure:4553: checking for memory.h
configure:4574: gcc -c -g -O2  conftest.c >&5
configure:4580: $? = 0
configure:4596: result: yes
configure:4553: checking for strings.h
configure:4574: gcc -c -g -O2  conftest.c >&5
configure:4580: $? = 0
configure:4596: result: yes
configure:4553: checking for inttypes.h
configure:4574: gcc -c -g -O2  conftest.c >&5
configure:4580: $? = 0
configure:4596: result: yes
configure:4553: checking for stdint.h
configure:4574: gcc -c -g -O2  conftest.c >&5
configure:4580: $? = 0
configure:4596: result: yes
configure:4553: checking for unistd.h
configure:4574: gcc -c -g -O2  conftest.c >&5
configure:4580: $? = 0
configure:4596: result: yes
configure:4625: checking malloc.h usability
configure:4642: gcc -c -g -O2  conftest.c >&5
configure:4648: $? = 0
configure:4662: result: yes
configure:4666: checking malloc.h presence
configure:4681: gcc -E  conftest.c
configure:4687: $? = 0
configure:4701: result: yes
configure:4734: checking for malloc.h
configure:4742: result: yes
configure:4615: checking for strings.h
configure:4621: result: yes
configure:4615: checking for unistd.h
configure:4621: result: yes
configure:4756: checking for an ANSI C-conforming const
configure:4831: gcc -c -g -O2  conftest.c >&5
configure:4837: $? = 0
configure:4852: result: yes
configure:4862: checking for size_t
configure:4892: gcc -c -g -O2  conftest.c >&5
configure:4898: $? = 0
configure:4913: result: yes
configure:4925: checking for inline
configure:4951: gcc -c -g -O2  conftest.c >&5
configure:4957: $? = 0
configure:4975: result: inline
configure:5002: checking for strdup
configure:5058: gcc -o conftest -g -O2   conftest.c  >&5
conftest.c:47: warning: conflicting types for built-in function 'strdup'
configure:5064: $? = 0
configure:5082: result: yes
configure:5002: checking for strstr
configure:5058: gcc -o conftest -g -O2   conftest.c  >&5
conftest.c:48: warning: conflicting types for built-in function 'strstr'
configure:5064: $? = 0
configure:5082: result: yes
configure:5002: checking for strchr
configure:5058: gcc -o conftest -g -O2   conftest.c  >&5
conftest.c:49: warning: conflicting types for built-in function 'strchr'
configure:5064: $? = 0
configure:5082: result: yes
configure:5002: checking for erand48
configure:5058: gcc -o conftest -g -O2   conftest.c  >&5
configure:5064: $? = 0
configure:5082: result: yes
configure:5237: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by ViennaRNA config.status 1.7.2, which was
generated by GNU Autoconf 2.61.  Invocation command line was

  CONFIG_FILES    = 
  CONFIG_HEADERS  = 
  CONFIG_LINKS    = 
  CONFIG_COMMANDS = 
  $ ./config.status 

on deneb

config.status:683: creating Makefile
config.status:683: creating ViennaRNA.spec
config.status:683: creating Utils/Makefile
config.status:683: creating Progs/Makefile
config.status:683: creating lib/Makefile
config.status:683: creating man/Makefile
config.status:683: creating Cluster/Makefile
config.status:683: creating H/Makefile
config.status:683: creating Perl/Makefile
config.status:683: creating man/RNAheat.1
config.status:683: creating man/RNAsubopt.1
config.status:683: creating man/RNAdistance.1
config.status:683: creating man/RNAinverse.1
config.status:683: creating man/RNAeval.1
config.status:683: creating man/RNAfold.1
config.status:683: creating man/RNApdist.1
config.status:683: creating man/RNAplot.1
config.status:683: creating man/RNALfold.1
config.status:683: creating man/RNAalifold.1
config.status:683: creating man/RNAduplex.1
config.status:683: creating man/RNAcofold.1
config.status:683: creating man/RNAplfold.1
config.status:683: creating man/RNAup.1
config.status:683: creating man/RNApaln.1
config.status:683: creating config.h
config.status:963: executing depfiles commands
configure:6594: === configuring in RNAforester (/home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/RNAforester)
configure:6697: running /bin/bash ./configure '--prefix=/usr/local'  --cache-file=/dev/null --srcdir=.
configure:6594: === configuring in Kinfold (/home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/Kinfold)
configure:6697: running /bin/bash ./configure '--prefix=/usr/local'  --cache-file=/dev/null --srcdir=.
configure:6733:
Configure successful with the following options:

  Perl Extension:      yes
  Analyse{Dists,Seqs}: no
  Kinfold:             yes
  RNAforester:         yes

Files will be installed in the following directories:

  Executables:  /usr/local/bin
  Libraries:    /usr/local/lib
  Header files: /usr/local/include
  Extra Data:   ${prefix}/share
  Man pages:    ${prefix}/share/man


## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=sparc-sun-solaris2.10
ac_cv_c_compiler_gnu=yes
ac_cv_c_const=yes
ac_cv_c_inline=inline
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_FPIC_set=
ac_cv_env_FPIC_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_PERLPREFIX_set=
ac_cv_env_PERLPREFIX_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_func_erand48=yes
ac_cv_func_strchr=yes
ac_cv_func_strdup=yes
ac_cv_func_strstr=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_malloc_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_host=sparc-sun-solaris2.10
ac_cv_objext=o
ac_cv_path_EGREP='/usr/sfw/bin/ggrep -E'
ac_cv_path_GREP=/usr/sfw/bin/ggrep
ac_cv_path_PerlCmd=/usr/bin/perl
ac_cv_path_install='/opt/csw/bin/ginstall -c'
ac_cv_path_mkdir=/opt/csw/bin/gmkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_cc_c89=
ac_cv_prog_cc_fpic=yes
ac_cv_prog_cc_g=yes
ac_cv_prog_cc_gcc_c_o=yes
ac_cv_prog_make_make_set=yes
ac_cv_type_size_t=yes
am_cv_CC_dependencies_compiler_type=gcc3

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/missing --run aclocal-1.10'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/missing --run tar'
AUTOCONF='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/missing --run autoconf'
AUTOHEADER='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/missing --run autoheader'
AUTOMAKE='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/missing --run automake-1.10'
AWK='gawk'
CC='gcc'
CCDEPMODE='depmode=gcc3'
CFLAGS='-g -O2'
CPP='gcc -E'
CPPFLAGS=''
CYGPATH_W='echo'
DEFS='-DHAVE_CONFIG_H'
DEPDIR='.deps'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/usr/sfw/bin/ggrep -E'
EXEEXT=''
FPIC='-fpic'
GREP='/usr/sfw/bin/ggrep'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
ISODATE='2010-03-13'
LDFLAGS=''
LIBOBJS=''
LIBS=''
LTLIBOBJS=''
MAKEINFO='${SHELL} /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/missing --run makeinfo'
MAKE_CLUSTER_FALSE=''
MAKE_CLUSTER_TRUE='#'
MAKE_FORESTER_FALSE='#'
MAKE_FORESTER_TRUE=''
MAKE_KINFOLD_FALSE='#'
MAKE_KINFOLD_TRUE=''
MAKE_PERL_EXT_FALSE='#'
MAKE_PERL_EXT_TRUE=''
OBJEXT='o'
PACKAGE='ViennaRNA'
PACKAGE_BUGREPORT='rna@tbi.univie.ac.at'
PACKAGE_NAME='ViennaRNA'
PACKAGE_STRING='ViennaRNA 1.7.2'
PACKAGE_TARNAME='ViennaRNA'
PACKAGE_VERSION='1.7.2'
PATH_SEPARATOR=':'
PERLPREFIX=''
PerlCmd='/usr/bin/perl'
RANLIB='ranlib'
SET_MAKE=''
SHELL='/bin/bash'
STRIP=''
VERSION='1.7.2'
ac_ct_CC='gcc'
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__quote=''
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
bindir='${exec_prefix}/bin'
build='sparc-sun-solaris2.10'
build_alias=''
build_cpu='sparc'
build_os='solaris2.10'
build_vendor='sun'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host='sparc-sun-solaris2.10'
host_alias=''
host_cpu='sparc'
host_os='solaris2.10'
host_vendor='sun'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='$(SHELL) /home/psgendb/install/T-COFFEE_distribution_Version_8.14/bin/download/distributions/RNAplfold/ViennaRNA-1.7.2/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='/opt/csw/bin/gmkdir -p'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr/local'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=' RNAforester Kinfold'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

#define PACKAGE_NAME "ViennaRNA"
#define PACKAGE_TARNAME "ViennaRNA"
#define PACKAGE_VERSION "1.7.2"
#define PACKAGE_STRING "ViennaRNA 1.7.2"
#define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at"
#define PACKAGE "ViennaRNA"
#define VERSION "1.7.2"
#define UNUSED __attribute__ ((unused))
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_MALLOC_H 1
#define HAVE_STRINGS_H 1
#define HAVE_UNISTD_H 1
#define HAVE_STRDUP 1
#define HAVE_STRSTR 1
#define HAVE_STRCHR 1
#define HAVE_ERAND48 1

configure: exit 0