Individual Channel Analysis of Two-Color Microarrays
Convert Gene Alias to Official Gene Symbols
Turn a Microarray Linear Model Object into a Dataframe
Convert marrayNorm Object to an MAList Object
Turn a Microarray Data Object into a Matrix
Between and within sums of squares for matrix
Combine RGList, MAList, EList or EListRaw Objects
Convert Individual Channel Design Matrix to M-A Format
Multiple Testing Genewise Across Contrasts
Set Status of each Spot from List of Spot Types
Estimate Proportion of True Null Hypotheses
Multiple Testing Across Genes and Contrasts
Retrieve the Dimensions of an RGList, MAList or MArrayLM Object
Retrieve the Dimension Names of an RGList, MAList, EList, EListRaw or MArrayLM Object
Empirical Bayes Statistics for Differential Expression
Extract Log-Expression Matrix from MAList
Moment Estimation of Scaled F-Distribution
Extract Basic Data from Microarray Data Objects
Extract the Print Layout of an Array from the GAL File
Fit Linear Model to Microarray Data by Generalized Least Squares
Intra-Spot Correlation for Two Color Data
Fit Linear Model to Microrray Data by Ordinary Least Squares
Fit Linear Model to Individual Channels of Two-Color Data
Two dimensional Moving Averages with 3x3 Window
M-value, A-value Expression List - class
Fit Linear Model to Microrray Data by Robust Regression
Normalize Columns of a Matrix to have the Median Absolute Value
Normalize Single Microarray Using Shrunk Robust Splines
Normalize Columns of a Matrix to have the same Quantiles
Fit Normal+Exp Convolution Model to Observed Intensities
Expected Signal Given Observed Foreground Under Normal+Exp Model
Multidimensional scaling plot of microarray data
Sigma vs A plot for microarray linear model
Pool Sample Variances with Unequal Variances
Identify Order in which Spots were Printed
Read RGList or EListRaw from Image Analysis Output Files
Read Header Information from Image Analysis Raw Data File
Subset RGList, MAList, EList or MArrayLM Objects
Convert Two-Color Targets Dataframe from One-Row-Per-Array to One-Row-Per-Channel
Estimate Scale Factor in Mixture of t-Distributions
Table of Top Genes from Linear Model Fit
Eliminate Duplicate Names from the Gene List
Unwrap Duplicate Spot Values from Rows into Columns