# ** CASAVA depth-filtered snp calls **
#$ SEQ_MAX_DEPTH phi 11.9621240252506
#
#$ COLUMNS seq_name pos bcalls_used bcalls_filt ref Q(snp) max_gt Q(max_gt) max_gt|poly_site Q(max_gt|poly_site) A_used C_used G_used T_used
phi	89	1	1	A	10	AC	3	AC	3	0	1	0	0
phi	90	1	1	C	10	AC	3	AC	3	1	0	0	0
phi	883	1	0	T	2	TT	4	GT	3	0	0	1	0
phi	922	1	0	T	2	TT	4	GT	3	0	0	1	0
phi	934	1	0	T	1	TT	6	GT	3	0	0	1	0
phi	1034	1	0	C	1	CC	8	AC	3	1	0	0	0
phi	1301	9	1	A	146	GG	24	GG	24	0	0	9	0
phi	1312	5	1	T	1	TT	8	CT	26	0	1	0	4
phi	1722	1	0	C	2	CC	5	CT	3	0	0	0	1
phi	1870	1	0	T	10	GT	3	GT	3	0	0	1	0
phi	1873	1	0	T	10	AT	3	AT	3	1	0	0	0
phi	2224	2	0	A	4	AT	4	AT	31	1	0	0	1
phi	2230	2	0	T	1	TT	6	AT	26	1	0	0	1
phi	2271	3	0	T	1	TT	7	CT	26	0	1	0	2
phi	2564	1	0	T	10	AT	3	AT	3	1	0	0	0
phi	2565	1	0	T	10	GT	3	GT	3	0	0	1	0
phi	2607	2	0	G	5	AG	5	AG	30	1	0	1	0
phi	2784	6	0	C	1	CC	9	AC	25	1	5	0	0
phi	2793	8	0	T	134	CC	21	CC	21	0	8	0	0
phi	2800	8	0	C	30	CT	30	CT	63	0	6	0	2
phi	2831	2	0	T	1	TT	6	CT	26	0	1	0	1
phi	3133	8	0	C	139	TT	21	TT	21	0	0	0	8
phi	3747	1	0	T	10	CT	3	CT	3	0	1	0	0
phi	3806	3	1	T	3	TT	4	CT	31	0	1	0	2
phi	3807	3	1	G	3	GG	4	GT	31	0	0	2	1
phi	3816	2	1	G	5	GT	5	GT	33	0	0	1	1
phi	3817	2	1	A	5	AT	5	AT	33	1	0	0	1
phi	4189	2	0	G	5	GT	5	GT	34	0	0	1	1
phi	4294	1	0	T	1	TT	9	CT	3	0	1	0	0
phi	4583	2	0	C	5	CG	5	CG	34	0	1	1	0
phi	4591	1	0	C	10	CT	3	CT	3	0	0	0	1
phi	4775	1	0	T	9	CT	2	CT	3	0	1	0	0
phi	4791	1	0	C	7	CT	2	CT	3	0	0	0	1
phi	5062	1	0	T	5	TT	2	CT	3	0	1	0	0
phi	5063	1	0	A	10	AT	3	AT	3	0	0	0	1
phi	5103	1	1	T	1	TT	8	CT	3	0	1	0	0