# ** CASAVA snp calls removed due to high depth ** #$ SEQ_MAX_DEPTH phi 0.196620868919421 # #$ COLUMNS seq_name pos bcalls_used bcalls_filt ref Q(snp) max_gt Q(max_gt) max_gt|poly_site Q(max_gt|poly_site) A_used C_used G_used T_used phi 4504 1 0 C 10 CT 3 CT 3 0 0 0 1 phi 4505 1 0 G 10 AG 3 AG 3 1 0 0 0