# ** CASAVA depth-filtered indel calls **
#$ SEQ_MAX_DEPTH chr22 undefined
#
#$ COLUMNS seq_name pos type ref_upstream ref/indel ref_downstream Q(indel) max_gtype Q(max_gtype) depth alt_reads indel_reads other_reads repeat_unit ref_repeat_count indel_repeat_count
chr22	14502714	3I	GCCACCGCCA	---/CAG	GCGACCATGG	197	het	43	5	1	4	0	CAG	0	1
chr22	14503278	1I	GGGCTCTGAC	-/T	TCACAGCAGC	608	het	144	16	4	11	0	T	1	2
chr22	14635389	3I	GGGGCCTGAC	---/TCG	TCATACTCCT	3070	hom	540	219	1	193	28	TCG	0	1
chr22	14746438	4D	GAATACTTTC	TTGT/----	TTGGTTGGGC	399	hom	22	9	0	8	1	TTGT	1	0
chr22	14785989	1I	GAGGGCATCT	-/C	CCTGCTCCCC	209	hom	12	5	0	4	1	C	2	3
chr22	14794028	3I	GCTCCATCGA	---/CTG	CCAGTACCCA	335	hom	15	7	0	6	1	CTG	0	1
chr22	14795085	2I	ACGTATATTT	--/AC	AGACTCCTGA	398	hom	18	7	0	7	0	AC	0	1
chr22	14795255	4I	CCAAAAACCA	----/CTCG	GTCAATGAAG	272	hom	12	8	0	5	3	CTCG	0	1
chr22	14795375	1I	TCCAATCACC	-/G	ACATTTTTGG	776	hom	36	15	0	13	2	G	0	1
chr22	14796285	3I	CCTGCACCAG	---/CAA	CAACACTTGT	335	hom	15	7	0	6	3	CAA	1	2
chr22	14796319	1I	GAATTTTATC	-/T	TTCCTTAAAA	197	hom	9	5	0	4	1	T	2	3
chr22	14848684	4D	CCATGCAAAA	GCTC/----	GCTCTTTAGT	124	hom	7	3	0	3	0	GCTC	2	1
chr22	15286539	3I	CAAAAGGAAA	---/TGT	TGAGTGAATG	144	hom	7	4	0	3	0	TGT	0	1
chr22	15286574	2I	TCAAGCCATG	--/CA	CCCTAGTCGT	394	hom	18	7	0	7	0	CA	0	1
chr22	15287061	4I	TAAAGCATTC	----/CTTT	CTTTAATTTT	398	hom	17	7	0	7	0	CTTT	1	2
chr22	15287167	1I	TTATAAAATT	-/C	TTGCTTTAAT	209	hom	9	4	0	4	0	C	0	1
chr22	15343370	3D	TCTCTTGCCG	CCA/---	CCATGTAAGA	102	het	102	8	3	3	2	CCA	2	1
chr22	15456297	2I	AAGCTATTTC	--/CA	CTCCTAGCTC	335	hom	15	10	0	6	4	CA	0	1
chr22	15507467	4D	ATCCCGCCAA	CTCC/----	CTCCACCACT	124	hom	7	3	0	3	0	CTCC	2	1
chr22	15533764	1I	AGAGAATTTA	-/T	TTTAAAAGTG	240	hom	12	5	0	5	0	T	3	4
chr22	15720493	2I	GGTCAGACTC	--/TT	TTCAAGTGCA	137	hom	7	3	0	3	0	T	2	4
chr22	15899502	1I	TGTTTTAAAA	-/G	TATTTTTGTT	209	hom	9	5	0	4	1	G	0	1
chr22	15954686	4I	CCTGGTGTTA	----/ATGC	GCATATCTGG	2791	hom	127	46	0	45	0	ATGC	0	1
chr22	16053824	2I	TTGTGAAGCC	--/CA	TGATTGTCAA	598	hom	29	19	0	10	9	CA	0	1
chr22	16053982	2D	TGGGAGCAAC	AA/--	AAAAAAACAA	2560	hom	192	152	4	105	45	A	9	7
chr22	16054071	1I	GATGTGCAAC	-/A	AATCTCCCTG	3070	hom	386	148	0	129	13	A	2	3
chr22	16075020	3I	ACGGAGCATT	---/ACG	ACATTCCCAG	197	het	24	8	1	4	5	ACG	0	1
chr22	16279045	1I	GAGTCCTAGA	-/T	TTTTGTAGCC	214	hom	12	6	0	5	1	T	4	5
chr22	16279073	2D	TTGTAGAGGG	GA/--	GGATAAAAAG	124	hom	7	4	0	3	1	GA	1	0
chr22	16377509	1I	CCAGTTCTGG	-/T	TCTTGGTATC	147	hom	7	5	0	3	2	T	1	2
chr22	16567459	1I	AATCTCAGTT	-/A	AAAGTATTTT	1139	hom	60	21	0	21	0	A	3	4
chr22	16567478	3I	TAAAAATTCT	---/TGG	TAGTTGAGCA	1374	hom	64	23	0	23	0	TGG	0	1
chr22	16590897	1I	TTGCCCCCCG	-/C	CCCTCATCCT	162	het	118	8	3	4	1	C	3	4
chr22	16627387	2I	TGTAGCTTTT	--/GG	TGTTGGGGGG	524	hom	24	9	0	9	0	G	0	2
chr22	16627431	1I	TGAATCAGCT	-/G	GTCCCTATGA	524	hom	24	10	0	9	1	G	1	2
chr22	16952372	4I	CACTGTGTCC	----/TTGG	TTGGTGTTGA	197	het	44	5	1	4	0	TTGG	1	2
chr22	16955888	4I	TTTTTCTTTG	----/TCTA	TGCAGATACA	498	het	29	10	1	9	1	TCTA	0	1
chr22	17543577	2I	GCACTGGAAT	--/CA	CGTGAGACAA	113	het	113	24	14	5	5	CA	0	1
chr22	17543578	2I	CACTGGAATC	--/AT	GTGAGACAAA	222	het	222	22	10	8	5	AT	0	1
chr22	17625424	1I	CAGAGACTGG	-/A	GCCATTACTT	147	hom	7	3	0	3	0	A	0	1
chr22	17626135	3I	GTACGAGGCC	---/CTG	TGGAACATCC	398	hom	17	7	0	7	0	CTG	0	1
chr22	18336263	1I	GCCCTGACTG	-/C	CCCCCCCGGC	343	het	20	17	2	12	3	C	7	8
chr22	18494615	1I	TTTCCTTTCC	-/T	TTTTTTTAAA	86	het	86	47	36	7	5	T	7	8
chr22	18765740	4D	AGAACTTGAT	TGTC/----	TGGCCGCGAA	165	het	50	6	1	4	1	TGTC	1	0
chr22	18766535	1I	CAGGTAGCCT	-/C	GGACACACAT	137	het	46	5	1	3	0	C	0	1
chr22	19167489	1I	AGGACTGGAC	-/T	GTACGTCTCA	209	hom	9	14	0	4	3	T	0	1
chr22	19168030	1I	TCTCTGATCT	-/G	GGGTCCCTTC	1723	hom	92	40	0	32	9	G	3	4
chr22	19168402	3D	TGCTGTCCGG	GGA/---	GGAGAGCAAG	730	hom	41	16	0	14	1	GGA	2	1
chr22	19286643	3D	AATGAAGGTG	TGA/---	GATACCCCGT	124	hom	7	3	0	3	0	TGA	1	0
chr22	19286685	3D	TCTGTAGTTG	TCA/---	TATATTTTGA	124	hom	7	3	0	3	0	TCA	1	0
chr22	19352038	3I	GCAGCCCCTG	---/GGT	GGGGGCCGGC	147	hom	7	3	0	3	0	GGT	0	1
chr22	19352099	1D	CCGGTTGGGG	C/-	CCGCCGCTAG	174	hom	12	5	0	5	0	C	3	2
chr22	19362511	1D	ACTCAAGGTA	G/-	TAGTAAATGA	124	hom	7	4	0	3	0	G	1	0
chr22	19637713	3D	TGTGTTTTAA	AAC/---	AACAACAACA	288	hom	16	12	0	6	6	AAC	9	8
chr22	20801972	3I	GAGTAGTCGT	---/AGG	AGAAGATGTT	461	hom	20	8	0	8	0	AGG	0	1
chr22	20802338	3I	GGCGGGCAGC	---/AGA	AAAGGCAGCA	156	hom	9	4	0	3	2	AGA	0	1
chr22	20955735	1D	ATTTTCAAAG	A/-	AAAAACCTAT	68	hom	7	3	0	3	0	A	6	5
chr22	20988326	5I	TGTAGAGAAA	-----/GAAGT	CAAGGAAGAA	193	het	96	6	2	4	1	GAAGT	0	1
chr22	21220316	1I	CAACTTCCCC	-/T	TTTTTTTCCT	23	het	23	44	32	5	6	T	7	8
chr22	21660565	1I	ACAGAAACTC	-/T	TTGTGGACAA	1682	hom	83	34	0	29	5	T	2	3
chr22	21994870	1D	TCCCCTCTCG	T/-	TGAGTCTTGC	330	hom	21	8	0	8	0	T	2	1
chr22	21995051	3D	TGTTCCTTCA	TGT/---	AGTAGCCTCG	1669	hom	93	32	0	31	1	TGT	1	0
chr22	22601686	1I	GGCTCATGAT	-/C	CCCAGACAAA	128	hom	7	3	0	3	0	C	3	4
chr22	22601696	1I	CCCAGACAAA	-/T	GAGTGGACCC	272	hom	12	5	0	5	0	T	0	1
chr22	22643744	1I	GCCCAATCAT	-/A	AAAAAAGTCA	113	het	113	17	11	5	1	A	6	7
chr22	22678713	1D	TGATCCCCCC	A/-	ACGGAAGCCA	376	hom	24	9	0	9	0	A	2	1
chr22	22678760	1D	GAAGATAAGC	A/-	GGGCGGGCAG	509	hom	27	10	0	10	0	A	1	0
chr22	22678784	1D	AGAAGCACAG	T/-	TTTGAGATGG	385	hom	27	10	0	10	0	T	4	3
chr22	22678854	1I	GGCCCTTCCT	-/G	GGAGGAGTCC	316	hom	15	6	0	6	0	G	2	3
chr22	23413045	2I	AAACATTGAA	--/AT	CAAGGATCTT	730	hom	35	14	0	12	3	AT	0	1
chr22	23413463	5I	TGTAACTAGA	-----/TATCT	TACCAGGTTG	163	het	33	6	1	3	2	TATCT	0	1
chr22	23413543	2I	AAAGAAAAAC	--/TG	TGTTACGTGG	793	hom	38	17	0	13	4	TG	1	2
chr22	23414118	1D	ATTGCCAATC	T/-	TTTGAACTCA	728	hom	52	20	0	18	2	T	4	3
chr22	23414780	2D	ATATAAAAAG	CA/--	CAAGTGTAGT	288	hom	16	9	0	6	2	CA	2	1
chr22	23415093	3I	AGGTTATAAT	---/TGG	TGGTTTAAAA	678	het	20	14	1	12	1	TGG	1	2
chr22	23415155	4D	CATTAGTTTT	TTTG/----	TTTGTTTGTT	102	hom	10	4	0	2	2	TTTG	3	2
chr22	23415417	1D	TCAAATAGTA	C/-	CCATAGATGA	404	hom	27	12	0	10	2	C	3	2
chr22	23415569	3I	TTTGGGGGTG	---/GTA	ACTAAAATCA	209	hom	9	4	0	4	0	GTA	0	1
chr22	23415578	1I	GACTAAAATC	-/A	AAAGAAATTA	184	hom	9	4	0	4	0	A	3	4
chr22	23415680	2I	TGTTAATATT	--/AA	GTGTTTTTTG	491	het	87	14	2	9	3	A	0	2
chr22	23415749	1D	GCCTCAGAAC	A/-	CATGAATAGC	565	hom	30	13	0	11	2	A	1	0
chr22	23415920	2I	ACTTGGCCTT	--/CA	TGGTCCTTTG	258	hom	15	6	0	5	1	CA	0	1
chr22	23416032	3I	GTAGAATTTG	---/TTT	TTGTTTTAAT	376	hom	17	10	0	7	2	T	2	5
chr22	23417584	1D	TGTGTATCGA	T/-	TTTTTTGTTG	89	hom	10	4	0	4	0	T	7	6
chr22	23490791	2I	AAGTTTGCCT	--/GG	GCCATTGGCA	461	hom	21	8	0	8	0	G	1	3
chr22	23490978	3D	TGGAGATAAT	AAC/---	ATAAGGGAGA	399	hom	22	8	0	8	0	AAC	1	0
chr22	23491334	2I	ACAGTCGTCA	--/CT	CTCTATTGTC	147	hom	7	6	0	3	3	CT	2	3
chr22	23491641	2I	ATTCGCTGTA	--/CC	CTTTAAGATA	587	hom	26	10	0	10	0	C	1	3
chr22	23903936	1I	CGTGGTCCCT	-/G	GGTGTGGCTC	914	hom	45	17	0	16	1	G	2	3
chr22	23905336	3I	CGTGCAGCTC	---/CTT	CTCGCGCAGC	342	hom	17	6	0	6	1	CTT	0	1
chr22	23905399	1I	TGAGCTCCAT	-/C	TTGTAGTTGA	587	hom	27	10	0	10	0	C	0	1
chr22	24075579	4D	CCTTCAGATA	CATT/----	CATTGCCAGA	344	hom	19	9	0	7	2	CATT	2	1
chr22	24075895	4I	AAATAAGCTC	----/TTCT	TTCTTCCATG	398	hom	17	8	0	7	1	TTCT	1	2
chr22	24076218	3I	GAGACAAATC	---/TCG	TCGCTCTAAA	375	het	86	10	2	7	2	TCG	1	2
chr22	24076221	3D	ACAAATCTCG	CTC/---	TAAATCTGGA	40	het	40	10	8	2	1	CTC	1	0
chr22	24169475	5I	ATTGACCCCT	-----/TGTTC	CTTGAGACTG	209	hom	9	5	0	4	4	TGTTC	0	1
chr22	24169557	1I	ATGTACCATG	-/T	TTTATAAACC	579	hom	30	13	0	11	0	T	3	4
chr22	24373318	2I	GGTGAGCCAT	--/TA	GGGAGCAGAA	209	hom	9	4	0	4	0	TA	0	1
chr22	24375490	4I	AGGCTACTGC	----/TTAT	TTATAAATCA	272	hom	12	7	0	5	3	TTAT	1	2
chr22	24377472	2I	CTTAGTATTG	--/AC	ACTCTCTACC	209	hom	9	6	0	4	2	AC	1	2
chr22	24377619	1I	CAAAATTATG	-/T	TTATGTACTA	256	hom	12	8	0	5	2	T	2	3
chr22	25148146	3D	AAGCTCCATG	AGT/---	AGTTTTTCCA	3070	hom	308	155	0	98	39	AGT	2	1
chr22	25148537	1I	TGAAAACATC	-/A	TGGAGAGGAT	3070	hom	158	54	0	54	0	A	0	1
chr22	25286462	2I	CACTGGGCGA	--/CT	CTGTGCCTCG	3070	hom	150	53	0	52	2	CT	1	2
chr22	25287144	1I	TCTAGCGCAG	-/T	TTTTTTTTTT	140	het	140	30	12	9	10	T	10	11
chr22	25287205	1I	CCTTTTAAAG	-/A	AAAAAAATTG	33	het	33	64	51	7	6	A	7	8
chr22	25287479	3I	TACGAAATAA	---/TTG	TTATTCTGTT	965	hom	44	18	0	16	3	TTG	0	1
chr22	25287513	3I	CTGTAATTGC	---/AAA	AAAAAGAAAA	84	het	71	10	3	3	4	A	5	8
chr22	25287513	4I	CTGTAATTGC	----/AAAA	AAAAAGAAAA	76	het	68	10	3	3	4	A	5	9
chr22	25613347	4D	TTGCTTGGCC	TTGT/----	TTGTAGCCCA	3070	hom	236	102	0	75	28	TTGT	2	1
chr22	26469548	4I	CGTCCCAAAT	----/CTTC	CTTCTTTCCC	569	hom	12	11	0	10	3	CTTC	1	2
chr22	28488580	1I	ATGAGAATCT	-/A	ATGCCTGTTG	116	hom	7	3	0	3	0	A	1	2
chr22	28771180	1I	GCCCCTGGGT	-/G	GTGGGTCCCT	147	hom	7	5	0	3	1	G	1	2
chr22	28772887	1I	TGGGGTTCAT	-/G	CCGTAGCTGA	268	hom	12	5	0	5	0	G	0	1
chr22	28862803	3I	TGGGCTTCTT	---/CAG	TATTTTTACT	2035	hom	93	34	0	33	2	CAG	0	1
chr22	28863169	1I	TAATCAGGCA	-/G	TTTTTGCCCT	2161	hom	101	35	0	35	0	G	0	1
chr22	28863192	1I	CATCTTCAGT	-/A	ATCAGCTTGA	2050	hom	98	35	0	33	2	A	1	2
chr22	29380459	2I	CTGCTTTTTC	--/TT	GTCATAGGGT	396	hom	18	51	0	7	11	T	0	2
chr22	29380518	1I	GCCTGGCTTC	-/G	CTTGGTCTCG	1775	hom	83	29	0	29	0	G	0	1
chr22	29380545	2I	GCATGCCTCG	--/CA	GGGTCCGCCA	1806	hom	85	30	0	30	0	CA	0	1
chr22	29628210	1I	AGAGCCCCAC	-/T	ACACAGCATA	335	hom	15	9	0	6	2	T	0	1
chr22	29628378	1I	CTTAAGGAAG	-/C	CTTGACATAC	1132	hom	54	19	0	19	1	C	1	2
chr22	29628490	1I	ACCAGATGAC	-/A	GAAGCTTCAG	967	hom	48	21	0	16	4	A	0	1
chr22	29628672	1I	AAACCTCGAA	-/C	TGTTGTGACG	524	hom	24	13	0	9	4	C	0	1
chr22	29628898	3D	GAAACACAGC	TTG/---	TTGTGAGTGC	785	hom	44	15	0	15	0	TTG	2	1
chr22	29629418	1D	ACCCCCTCCC	A/-	AAGTGGACTG	314	hom	21	8	0	8	0	A	3	2
chr22	29629758	1D	TGCCTGTGTG	T/-	TTGTGTTTAT	297	het	33	10	1	8	2	T	3	2
chr22	29629875	5D	TTCCCTTGAT	AAATG/-----	AAATTGTACT	529	het	28	15	1	11	2	AAATG	1	0
chr22	29629906	1I	AGCTGTCAGG	-/A	ACCTTCAGAT	270	hom	12	6	0	5	1	A	1	2
chr22	29630237	1D	CTACTGTATC	T/-	TTGTTACAAG	751	hom	54	23	0	17	7	T	3	2
chr22	29630341	5I	CCAATACTTA	-----/ACTTC	AGAAAGACAT	1468	hom	65	27	0	24	8	ACTTC	0	1
chr22	29630420	3I	GGATAAGATA	---/AAG	AACAAAACAA	587	hom	26	13	0	10	4	AAG	0	1
chr22	29630492	2I	TTCCAAACAC	--/TT	AACACATTCA	650	hom	29	13	0	11	2	T	0	2
chr22	29701927	1I	GCTCAATATC	-/T	TATCATTCGT	125	het	125	9	5	3	0	T	1	2
chr22	30002777	1D	ACTTTCAGAG	C/-	CCCCCCCGGG	240	hom	27	10	0	9	1	C	8	7
chr22	30003297	1I	TTCCACTTTT	-/G	GGATTTTTTT	207	het	207	32	21	6	5	G	2	3
chr22	30003329	2I	CTGATGGGAC	--/TT	TTTGTGTTTT	918	het	19	22	2	18	1	T	3	5
chr22	30683392	2I	TACTTGTAAC	--/TT	TTTTTTTTTT	23	het	6	11	2	6	4	T	14	16
chr22	30996178	2I	TGGCCACCTA	--/CT	CCTTTGAGGT	335	hom	15	6	0	6	0	CT	0	1
chr22	30998401	3D	ATGGCCTTCA	TGG/---	TCGACAGGCA	219	hom	13	6	0	5	1	TGG	1	0
chr22	30999009	2I	GCACCATGGA	--/GC	GCAGCAAGCT	147	hom	7	3	0	3	0	GC	1	2
chr22	31122865	2I	CCACTGGAGG	--/CT	CTATGAGTAA	137	het	29	4	1	3	0	CT	1	2
chr22	31230537	3I	TATCGCCTCC	---/CCT	CCTCACACCT	224	het	41	6	1	4	1	CCT	1	2
chr22	31231533	4D	TGAGACACTT	TAAC/----	TAAATTATCT	206	het	206	11	5	5	2	TAAC	1	0
chr22	31232923	1D	ATTATTCAGG	C/-	CCCCTCCCTT	88	het	88	12	7	4	1	C	5	4
chr22	31232960	1D	CCAGGATTTG	C/-	CCCCACCCAG	45	het	45	17	9	3	5	C	5	4
chr22	31233053	1I	TTCACTGAAT	-/A	AAGTAAAGGC	121	het	117	6	3	3	0	A	2	3
chr22	31233479	3D	ACTGTGCCCC	CAA/---	AAAAAACTTG	75	het	75	18	8	3	7	CAA	1	0
chr22	31233480	3D	CTGTGCCCCC	AAA/---	AAAAACTTGT	70	het	70	14	6	5	6	A	8	5
chr22	31233507	2D	CCTACTATCT	TC/--	TGTCTAGTCA	142	het	142	14	8	4	2	TC	1	0
chr22	31360900	3D	GTCTTAAAAC	ATT/---	ATGAGATTTT	124	hom	7	3	0	3	0	ATT	1	0
chr22	31587379	3I	CAGTGTGAGC	---/AGA	AGAAGCTGAT	314	het	53	9	1	6	3	AGA	1	2
chr22	31649921	3D	ATGAGAACAT	GTG/---	GTATTTGGTT	124	hom	7	3	0	3	0	GTG	1	0
chr22	31649941	1D	GTTTTCTGTT	C/-	CTGTGTTAGT	98	hom	7	3	0	3	0	C	2	1
chr22	33891293	1I	GTATCCTTAT	-/G	GGGAAGCTGT	183	hom	9	4	0	4	0	G	3	4
chr22	33891426	4I	TGTCTTTACT	----/GATC	CATTTGCTGT	461	hom	20	8	0	8	0	GATC	0	1
chr22	33920906	1D	TTGGAGACGA	C/-	TTGAGTGTGT	951	hom	52	31	0	18	13	C	1	0
chr22	35941746	1I	CTTGGTTCTT	-/C	TCCAATATCT	3070	hom	188	64	0	64	0	C	0	1
chr22	36532350	1D	AGGGATTTGC	G/-	GGGGGGGCTT	133	hom	15	10	0	6	4	G	8	7
chr22	37210044	1D	AAAAACCCAG	A/-	ATTTGGTTGT	266	het	266	26	14	8	5	A	2	1
chr22	37210196	1D	TCTGTAAGAT	G/-	GGGGGGGGAC	190	het	171	22	7	11	5	G	9	8
chr22	37211646	2D	TATATATATA	TT/--	TTTTTTTTTT	1	ref	8	10	2	4	4	T	14	12
chr22	37214213	1I	GAACAGAAAC	-/A	AAAAAAAGAC	99	het	99	17	8	5	4	A	7	8
chr22	37448135	2D	CTAGGTAAAC	TA/--	TAAATTTCAA	124	hom	7	4	0	3	0	TA	2	1
chr22	37448201	3I	TTAAAATAAT	---/ACG	ATTCACATTT	738	het	17	14	1	13	0	ACG	0	1
chr22	37448966	4I	GGAAGTTTGC	----/TTAG	TCAAATCTGA	523	hom	23	14	0	9	3	TTAG	0	1
chr22	37449065	3I	TCCACTGAGA	---/CTG	CCACAACTTC	1216	hom	55	21	0	20	1	CTG	0	1
chr22	37449134	1I	TCTGTAGGAC	-/A	CACGAAGGTG	483	hom	24	9	0	8	1	A	0	1
chr22	37449174	1D	AAGCACCAAA	T/-	TATTTCCCCT	516	hom	34	14	0	12	2	T	2	1
chr22	37881822	4D	GTGGGAGGTG	TTTT/----	GTTTTTTTCT	171	hom	13	5	0	5	0	T	4	0
chr22	37881926	1D	TGCTGAAGAT	C/-	CCTTAAGAGC	270	hom	18	8	0	7	1	C	3	2
chr22	38246573	1I	TTTCCCTCCT	-/C	CCCCGCCCTC	319	het	319	36	24	9	3	C	4	5
chr22	38602064	1I	ATTGTTGGTT	-/A	AGAGACTTGG	649	hom	30	14	0	11	3	A	1	2
chr22	38832457	1I	AGATCCTCCA	-/T	GCAGATGATG	3070	hom	590	208	0	197	15	T	0	1
chr22	38832953	1D	ATTCCTTCAC	T/-	TTTTTCTTAA	3070	hom	438	175	0	144	20	T	6	5
chr22	39312808	2I	TGACTGCAAC	--/CG	CCCCTTTCTC	2422	hom	88	47	1	43	3	CG	0	1
chr22	39313066	2I	GCTTGAAGGG	--/CT	CTTTGGATGT	263	hom	23	25	0	4	23	CT	1	2
chr22	39313361	3I	GCGCTGGATA	---/CGG	CGATGGTTTC	648	hom	29	11	0	11	0	CGG	0	1
chr22	39400027	3I	ATGGGGGCAT	---/CAG	CAGAAGGGGC	1673	hom	78	39	0	27	2	CAG	1	2
chr22	39799550	1D	TTTATTTAAC	T/-	TGGTCTCAAG	293	hom	21	19	0	7	14	T	2	1
chr22	39799855	3D	AATGCATCTC	ACG/---	ATATTTGGAA	3070	hom	497	230	1	180	46	ACG	1	0
chr22	39799918	1D	GCCACATTGT	A/-	GAACTTTGGG	3070	hom	307	114	0	100	14	A	1	0
chr22	39800029	1I	ACAACAACAA	-/C	AAATAAAGCC	650	hom	30	24	0	11	15	C	0	1
chr22	39800067	2I	TTTCTATGCA	--/AG	TTAGGTTTTG	2307	hom	109	38	0	37	1	AG	0	1
chr22	39800125	3I	TAGAAGCATT	---/TGC	CGTGGACGAT	3070	hom	256	89	0	89	0	TGC	0	1
chr22	39800597	3I	AGCACAGCTT	---/CTC	CTTGATGTCA	3070	hom	801	312	0	275	59	CTC	0	1
chr22	39800633	1I	CGGCCGTGGT	-/G	GTGAAGCTGT	3070	hom	760	300	0	250	53	G	1	2
chr22	40434495	1I	CTTCAGTGGA	-/C	TACCAAAAAT	2476	hom	116	46	0	40	6	C	0	1
chr22	40434799	1D	GATGTCTGGG	T/-	CTTAAGGGAG	2000	hom	110	55	0	37	16	T	1	0
chr22	40435294	4I	GGTACCTTCT	----/CTCC	CTTCTTTGCA	2412	hom	109	55	0	39	16	CTCC	0	1
chr22	40726463	3D	AATTGAGTCC	CAT/---	CATCATCATC	849	hom	49	21	0	16	5	CAT	6	5
chr22	40727268	1I	CAGTCTGTGC	-/G	ATCATCCAAC	3070	hom	164	71	0	56	15	G	0	1
chr22	40727670	1D	GAGCCTGGGT	G/-	GGGGAAGTAT	1757	hom	137	48	0	44	4	G	5	4
chr22	40727709	3I	TTACCGCACC	---/AGA	AGGACAGGAC	1404	hom	64	28	0	23	5	AGA	0	1
chr22	40729163	2D	TCTCTCCAGA	GG/--	GGTAACCTGC	214	hom	16	7	0	6	1	G	4	2
chr22	40729348	2I	TCCACTTTTT	--/CC	GTAAAATGGG	173	hom	9	4	0	3	1	C	0	2
chr22	40771879	3I	TTGAAGCTAC	---/TTA	TTGTTGATAG	295	hom	15	10	0	6	4	TTA	0	1
chr22	40772616	1D	TTCTAAAAGA	G/-	AAATTTTATG	124	hom	7	3	0	3	0	G	1	0
chr22	40772640	1D	TAAGAGTTAC	T/-	TTTTTGGATT	68	hom	7	3	0	3	0	T	6	5
chr22	40772726	2I	TGGATAAACT	--/TG	TGCTGGTGTT	461	hom	21	8	0	8	0	TG	1	2
chr22	40772936	1I	ATGCAGCATG	-/T	TTTATAAACC	344	hom	18	9	0	7	4	T	3	4
chr22	40773111	2D	TATCTGATGG	AT/--	ATATAAATTT	663	hom	37	17	0	13	4	AT	3	2
chr22	40833584	4I	ATTTTAAAAC	----/AAAT	AAAAATAATT	650	hom	29	11	0	11	0	AAAT	0	1
chr22	40834312	1I	AGCGAACAGG	-/T	TTCTTTTGAT	854	hom	42	18	0	15	3	T	2	3
chr22	40834430	1I	GGCCCAGTCA	-/T	TTCCTCATCT	1452	hom	71	27	0	25	2	T	2	3
chr22	41310362	1I	TCTGGTTTTT	-/C	TTCACTGGGC	248	het	197	10	4	5	1	C	0	1
chr22	41365902	1I	ATCAGATGTT	-/A	AAGACTGGTC	751	hom	39	14	0	13	1	A	2	3
chr22	41543724	1I	TGAGTCAACA	-/T	TTTTTTTTGC	34	het	34	7	4	3	0	T	8	9
chr22	41548345	1I	CCAAACTTCC	-/T	TTTTTTGGCC	63	het	62	6	3	3	0	T	6	7
chr22	41843264	1I	GTGAGCTGTC	-/A	TTTTTTTTTT	209	hom	9	4	0	4	0	A	0	1
chr22	42372558	5I	AAAGAGGAAA	-----/TAAAT	AAAAGTACGC	1612	het	65	32	3	28	5	TAAAT	0	1
chr22	43341709	1I	CCGCGGGGAT	-/A	GACTGGGGTC	461	hom	21	8	0	8	0	A	0	1
chr22	43341746	3I	ATCCAGAACG	---/AGA	AGGAGACCAT	648	hom	29	11	0	11	0	AGA	0	1
chr22	43342218	2I	GGAGGTAGAT	--/GC	CCCCAAATCT	2602	hom	121	45	0	42	3	GC	0	1
chr22	43676237	2I	AAAGCCCAAG	--/AA	GGGGAAGCCC	3070	hom	315	127	0	95	25	A	0	2
chr22	43676402	2I	CTGTTACAAA	--/AC	CAGTTGGTGG	3070	hom	286	109	0	98	11	AC	0	1
chr22	44110931	1I	TTGAAGTTTC	-/A	AAAAAAACGC	49	het	49	7	3	3	1	A	7	8
chr22	45255275	1I	GGTGCCTTGG	-/A	GGGCTCTGGC	272	hom	12	6	0	5	1	A	0	1
chr22	45255336	1I	CACAGGAAAT	-/A	ATAAGCTCTA	335	hom	15	7	0	6	1	A	1	2
chr22	46787465	1I	CTGGCACAAA	-/T	TAGGGCAGCC	977	hom	47	43	0	16	33	T	1	2
chr22	47996138	4I	CAGCAGTTCC	----/TCCT	TCTTCTTCCC	2029	hom	92	53	0	33	18	TCCT	0	1
chr22	48831309	1D	ACACTGCATG	A/-	AAAAAGCATT	68	hom	7	3	0	3	1	A	6	5
chr22	49318790	1I	CTGCGTGAGA	-/G	GGTCATGATC	256	hom	12	5	0	5	0	G	2	3
chr22	49540271	1I	CCTGACGCTC	-/T	TTTAGTTTCA	805	hom	42	16	0	15	1	T	3	4
chr22	49540510	1I	ATATTCTGTT	-/G	TTGTTCACTA	176	hom	9	6	0	3	3	G	0	1
chr22	49584052	2D	CGCAGCCACA	CG/--	CAAAAAAGAA	3070	het	285	117	10	98	11	CG	1	0
chr22	49584396	1I	TTCGATGTTG	-/C	TAACAAAATT	3070	hom	68	104	4	97	2	C	0	1