################################################################################
##
## Copyright (c) 2007-2011 Illumina, Inc.
##
## This software is covered by the "Illumina Genome Analyzer Software 
## License Agreement" and the "Illumina Source Code License Agreement", 
## and certain third party copyright/licenses, and any user of this 
## source file is bound by the terms therein (see accompanying files
## Illumina_Genome_Analyzer_Software_License_Agreement.pdf and
## Illumina_Source_Code_License_Agreement.pdf and third party 
## copyright/license notices).
##
## This file is part of the Consensus Assessment of Sequence And VAriation
## (CASAVA) software package.
##
## file ValidationConfig.mk
##
## brief Example validation dataset configuration 
##
## author Roman Petrovski
##
################################################################################

EXECUTE_BCL_TO_FASTQ_PARAMS := KEEP_INTERMEDIARY:=no
# the original RTA dataset was 101,7,101 cycles cycles above 76 are removed
# Force an explict mask as the one detected from RunInfo.xml is incorrect
CONFIGURE_BCL_TO_FASTQ_PARAMS := --use-bases-mask 'y76n*,I6n,y76n*'