SYNCH_EXPORT1 0 task export1 waiting N/A /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/sortExport.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --target=check EXP_LANE_SPLIT_1 0 task Split export set 1 waiting SYNCH_EXPORT1 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/sortExport.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --exportSet=1 --read1Export=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Aligned/Project_FC626BWAAXX/Sample_lane4/lane4_NoIndex_L004_R1_001_export.txt.gz --read2Export=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Aligned/Project_FC626BWAAXX/Sample_lane4/lane4_NoIndex_L004_R2_001_export.txt.gz --target=split SYNCH_EXPORT2 0 synch export2 waiting N/A TASKS (EXP_LANE_SPLIT_1[0],) SYNCH_EXPORT3 0 task export3 waiting SYNCH_EXPORT2 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/sortExport.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --target=commit SYNCH_EXPORT5 0 synch export5 finished N/A TASKS () SAMPLE_INDEX_CAGATC/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_CAGATC' --binId=0000 --target=split CTE2_550bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_550bp' --binId=0000 --target=split CTE2_450bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_450bp' --binId=0000 --target=split CTE2_250bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_250bp' --binId=0000 --target=split CTE1_423bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_423bp' --binId=0000 --target=split CTE2_750bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_750bp' --binId=0000 --target=split SAMPLE_INDEX_ACAGTG/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_ACAGTG' --binId=0000 --target=split CTA_450bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_450bp' --binId=0000 --target=split CTL_550bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_550bp' --binId=0000 --target=split CTE1_523bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_523bp' --binId=0000 --target=split phi/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='phi' --binId=0000 --target=split CTE2_150bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_150bp' --binId=0000 --target=split CTL_650bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_650bp' --binId=0000 --target=split CTA_150bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_150bp' --binId=0000 --target=split CTA_750bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_750bp' --binId=0000 --target=split CTE1_723bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_723bp' --binId=0000 --target=split SAMPLE_INDEX_GCCAAT/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_GCCAAT' --binId=0000 --target=split CTE1_123bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_123bp' --binId=0000 --target=split CTL_150bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_150bp' --binId=0000 --target=split CTE1_623bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_623bp' --binId=0000 --target=split CTE1_223bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_223bp' --binId=0000 --target=split CONTROL_INDEX/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CONTROL_INDEX' --binId=0000 --target=split CTE1_323bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_323bp' --binId=0000 --target=split CTE2_650bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_650bp' --binId=0000 --target=split SAMPLE_INDEX_GATCAG/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_GATCAG' --binId=0000 --target=split CTL_850bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_850bp' --binId=0000 --target=split CTL_450bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_450bp' --binId=0000 --target=split SAMPLE_INDEX_TTAGGC/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_TTAGGC' --binId=0000 --target=split SAMPLE_INDEX_ATCACG/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_ATCACG' --binId=0000 --target=split SAMPLE_INDEX_TAGCTT/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_TAGCTT' --binId=0000 --target=split CTA_650bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_650bp' --binId=0000 --target=split CTA_850bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_850bp' --binId=0000 --target=split SAMPLE_INDEX_CGATGT/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_CGATGT' --binId=0000 --target=split SAMPLE_INDEX_ACTTGA/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_ACTTGA' --binId=0000 --target=split CTA_250bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_250bp' --binId=0000 --target=split CTA_350bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_350bp' --binId=0000 --target=split CTA_550bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_550bp' --binId=0000 --target=split SAMPLE_INDEX_CTTGTA/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_CTTGTA' --binId=0000 --target=split CTE1_823bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_823bp' --binId=0000 --target=split TAGSET1/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='TAGSET1' --binId=0000 --target=split CTE2_350bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_350bp' --binId=0000 --target=split CTL_750bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_750bp' --binId=0000 --target=split CTL_350bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_350bp' --binId=0000 --target=split CTL_250bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_250bp' --binId=0000 --target=split CTE2_850bp/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_850bp' --binId=0000 --target=split SAMPLE_INDEX_GGCTAC/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_GGCTAC' --binId=0000 --target=split SAMPLE_INDEX_TGACCA/0000 0 task sortRmDupSplit waiting SYNCH_EXPORT3 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_TGACCA' --binId=0000 --target=split SYNCH_SORT 0 synch sortRmDupSplit waiting N/A TASKS (SAMPLE_INDEX_CAGATC/0000[0],CTE2_550bp/0000[0],CTE2_450bp/0000[0],CTE2_250bp/0000[0],CTE1_423bp/0000[0],CTE2_750bp/0000[0],SAMPLE_INDEX_ACAGTG/0000[0],CTA_450bp/0000[0],CTL_550bp/0000[0],CTE1_523bp/0000[0],phi/0000[0],CTE2_150bp/0000[0],CTL_650bp/0000[0],CTA_150bp/0000[0],CTA_750bp/0000[0],CTE1_723bp/0000[0],SAMPLE_INDEX_GCCAAT/0000[0],CTE1_123bp/0000[0],CTL_150bp/0000[0],CTE1_623bp/0000[0],CTE1_223bp/0000[0],CONTROL_INDEX/0000[0],CTE1_323bp/0000[0],CTE2_650bp/0000[0],SAMPLE_INDEX_GATCAG/0000[0],CTL_850bp/0000[0],CTL_450bp/0000[0],SAMPLE_INDEX_TTAGGC/0000[0],SAMPLE_INDEX_ATCACG/0000[0],SAMPLE_INDEX_TAGCTT/0000[0],CTA_650bp/0000[0],CTA_850bp/0000[0],SAMPLE_INDEX_CGATGT/0000[0],SAMPLE_INDEX_ACTTGA/0000[0],CTA_250bp/0000[0],CTA_350bp/0000[0],CTA_550bp/0000[0],SAMPLE_INDEX_CTTGTA/0000[0],CTE1_823bp/0000[0],TAGSET1/0000[0],CTE2_350bp/0000[0],CTL_750bp/0000[0],CTL_350bp/0000[0],CTL_250bp/0000[0],CTE2_850bp/0000[0],SAMPLE_INDEX_GGCTAC/0000[0],SAMPLE_INDEX_TGACCA/0000[0],) SYNC_RM_SPLIT_TEMP 0 synch syncRmSplitTemp waiting N/A TASKS (SYNCH_SORT[0],) SYNCH_SORT2 0 task sortRemoveTemps waiting SYNC_RM_SPLIT_TEMP /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/sortExport.pl --projectDir='/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4' --target=removeTemps SYNCH_DUPL2 0 task sortDupStats waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/generateStats.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --target=duplicates REPORT 0 task sortDupReport waiting SYNCH_DUPL2 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/generateReports.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --target=duplicates buildSAMPLE_INDEX_CAGATC/0000 0 task sortMerge to BAM for SAMPLE_INDEX_CAGATC waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_CAGATC' --binId=0000 --target=merge SYNCH_MERGE_BAM_SAMPLE_INDEX_CAGATC_DONE 0 synch sortMerge to BAM for SAMPLE_INDEX_CAGATC waiting N/A TASKS (buildSAMPLE_INDEX_CAGATC/0000[0],) SORTED2BAM_SAMPLE_INDEX_CAGATC 0 task Merging BAMs for SAMPLE_INDEX_CAGATC waiting SYNCH_MERGE_BAM_SAMPLE_INDEX_CAGATC_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_CAGATC SYNCH_MERGE_SAMPLE_INDEX_CAGATC_DONE 0 synch sortMerge for SAMPLE_INDEX_CAGATC waiting N/A TASKS (SORTED2BAM_SAMPLE_INDEX_CAGATC[0],) buildCTE2_550bp/0000 0 task sortMerge to BAM for CTE2_550bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_550bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTE2_550bp_DONE 0 synch sortMerge to BAM for CTE2_550bp waiting N/A TASKS (buildCTE2_550bp/0000[0],) SORTED2BAM_CTE2_550bp 0 task Merging BAMs for CTE2_550bp waiting SYNCH_MERGE_BAM_CTE2_550bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE2_550bp SYNCH_MERGE_CTE2_550bp_DONE 0 synch sortMerge for CTE2_550bp waiting N/A TASKS (SORTED2BAM_CTE2_550bp[0],) buildCTE2_450bp/0000 0 task sortMerge to BAM for CTE2_450bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_450bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTE2_450bp_DONE 0 synch sortMerge to BAM for CTE2_450bp waiting N/A TASKS (buildCTE2_450bp/0000[0],) SORTED2BAM_CTE2_450bp 0 task Merging BAMs for CTE2_450bp waiting SYNCH_MERGE_BAM_CTE2_450bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE2_450bp SYNCH_MERGE_CTE2_450bp_DONE 0 synch sortMerge for CTE2_450bp waiting N/A TASKS (SORTED2BAM_CTE2_450bp[0],) buildCTE2_250bp/0000 0 task sortMerge to BAM for CTE2_250bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_250bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTE2_250bp_DONE 0 synch sortMerge to BAM for CTE2_250bp waiting N/A TASKS (buildCTE2_250bp/0000[0],) SORTED2BAM_CTE2_250bp 0 task Merging BAMs for CTE2_250bp waiting SYNCH_MERGE_BAM_CTE2_250bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE2_250bp SYNCH_MERGE_CTE2_250bp_DONE 0 synch sortMerge for CTE2_250bp waiting N/A TASKS (SORTED2BAM_CTE2_250bp[0],) buildCTE1_423bp/0000 0 task sortMerge to BAM for CTE1_423bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_423bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTE1_423bp_DONE 0 synch sortMerge to BAM for CTE1_423bp waiting N/A TASKS (buildCTE1_423bp/0000[0],) SORTED2BAM_CTE1_423bp 0 task Merging BAMs for CTE1_423bp waiting SYNCH_MERGE_BAM_CTE1_423bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE1_423bp SYNCH_MERGE_CTE1_423bp_DONE 0 synch sortMerge for CTE1_423bp waiting N/A TASKS (SORTED2BAM_CTE1_423bp[0],) buildCTE2_750bp/0000 0 task sortMerge to BAM for CTE2_750bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_750bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTE2_750bp_DONE 0 synch sortMerge to BAM for CTE2_750bp waiting N/A TASKS (buildCTE2_750bp/0000[0],) SORTED2BAM_CTE2_750bp 0 task Merging BAMs for CTE2_750bp waiting SYNCH_MERGE_BAM_CTE2_750bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE2_750bp SYNCH_MERGE_CTE2_750bp_DONE 0 synch sortMerge for CTE2_750bp waiting N/A TASKS (SORTED2BAM_CTE2_750bp[0],) buildSAMPLE_INDEX_ACAGTG/0000 0 task sortMerge to BAM for SAMPLE_INDEX_ACAGTG waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_ACAGTG' --binId=0000 --target=merge SYNCH_MERGE_BAM_SAMPLE_INDEX_ACAGTG_DONE 0 synch sortMerge to BAM for SAMPLE_INDEX_ACAGTG waiting N/A TASKS (buildSAMPLE_INDEX_ACAGTG/0000[0],) SORTED2BAM_SAMPLE_INDEX_ACAGTG 0 task Merging BAMs for SAMPLE_INDEX_ACAGTG waiting SYNCH_MERGE_BAM_SAMPLE_INDEX_ACAGTG_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_ACAGTG SYNCH_MERGE_SAMPLE_INDEX_ACAGTG_DONE 0 synch sortMerge for SAMPLE_INDEX_ACAGTG waiting N/A TASKS (SORTED2BAM_SAMPLE_INDEX_ACAGTG[0],) buildCTA_450bp/0000 0 task sortMerge to BAM for CTA_450bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_450bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTA_450bp_DONE 0 synch sortMerge to BAM for CTA_450bp waiting N/A TASKS (buildCTA_450bp/0000[0],) SORTED2BAM_CTA_450bp 0 task Merging BAMs for CTA_450bp waiting SYNCH_MERGE_BAM_CTA_450bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTA_450bp SYNCH_MERGE_CTA_450bp_DONE 0 synch sortMerge for CTA_450bp waiting N/A TASKS (SORTED2BAM_CTA_450bp[0],) buildCTL_550bp/0000 0 task sortMerge to BAM for CTL_550bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_550bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTL_550bp_DONE 0 synch sortMerge to BAM for CTL_550bp waiting N/A TASKS (buildCTL_550bp/0000[0],) SORTED2BAM_CTL_550bp 0 task Merging BAMs for CTL_550bp waiting SYNCH_MERGE_BAM_CTL_550bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTL_550bp SYNCH_MERGE_CTL_550bp_DONE 0 synch sortMerge for CTL_550bp waiting N/A TASKS (SORTED2BAM_CTL_550bp[0],) buildCTE1_523bp/0000 0 task sortMerge to BAM for CTE1_523bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_523bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTE1_523bp_DONE 0 synch sortMerge to BAM for CTE1_523bp waiting N/A TASKS (buildCTE1_523bp/0000[0],) SORTED2BAM_CTE1_523bp 0 task Merging BAMs for CTE1_523bp waiting SYNCH_MERGE_BAM_CTE1_523bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE1_523bp SYNCH_MERGE_CTE1_523bp_DONE 0 synch sortMerge for CTE1_523bp waiting N/A TASKS (SORTED2BAM_CTE1_523bp[0],) buildphi/0000 0 task sortMerge to BAM for phi waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='phi' --binId=0000 --target=merge SYNCH_MERGE_BAM_phi_DONE 0 synch sortMerge to BAM for phi waiting N/A TASKS (buildphi/0000[0],) SORTED2BAM_phi 0 task Merging BAMs for phi waiting SYNCH_MERGE_BAM_phi_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=phi SYNCH_MERGE_phi_DONE 0 synch sortMerge for phi waiting N/A TASKS (SORTED2BAM_phi[0],) buildCTE2_150bp/0000 0 task sortMerge to BAM for CTE2_150bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_150bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTE2_150bp_DONE 0 synch sortMerge to BAM for CTE2_150bp waiting N/A TASKS (buildCTE2_150bp/0000[0],) SORTED2BAM_CTE2_150bp 0 task Merging BAMs for CTE2_150bp waiting SYNCH_MERGE_BAM_CTE2_150bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE2_150bp SYNCH_MERGE_CTE2_150bp_DONE 0 synch sortMerge for CTE2_150bp waiting N/A TASKS (SORTED2BAM_CTE2_150bp[0],) buildCTL_650bp/0000 0 task sortMerge to BAM for CTL_650bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_650bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTL_650bp_DONE 0 synch sortMerge to BAM for CTL_650bp waiting N/A TASKS (buildCTL_650bp/0000[0],) SORTED2BAM_CTL_650bp 0 task Merging BAMs for CTL_650bp waiting SYNCH_MERGE_BAM_CTL_650bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTL_650bp SYNCH_MERGE_CTL_650bp_DONE 0 synch sortMerge for CTL_650bp waiting N/A TASKS (SORTED2BAM_CTL_650bp[0],) buildCTA_150bp/0000 0 task sortMerge to BAM for CTA_150bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_150bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTA_150bp_DONE 0 synch sortMerge to BAM for CTA_150bp waiting N/A TASKS (buildCTA_150bp/0000[0],) SORTED2BAM_CTA_150bp 0 task Merging BAMs for CTA_150bp waiting SYNCH_MERGE_BAM_CTA_150bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTA_150bp SYNCH_MERGE_CTA_150bp_DONE 0 synch sortMerge for CTA_150bp waiting N/A TASKS (SORTED2BAM_CTA_150bp[0],) buildCTA_750bp/0000 0 task sortMerge to BAM for CTA_750bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_750bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTA_750bp_DONE 0 synch sortMerge to BAM for CTA_750bp waiting N/A TASKS (buildCTA_750bp/0000[0],) SORTED2BAM_CTA_750bp 0 task Merging BAMs for CTA_750bp waiting SYNCH_MERGE_BAM_CTA_750bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTA_750bp SYNCH_MERGE_CTA_750bp_DONE 0 synch sortMerge for CTA_750bp waiting N/A TASKS (SORTED2BAM_CTA_750bp[0],) buildCTE1_723bp/0000 0 task sortMerge to BAM for CTE1_723bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_723bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTE1_723bp_DONE 0 synch sortMerge to BAM for CTE1_723bp waiting N/A TASKS (buildCTE1_723bp/0000[0],) SORTED2BAM_CTE1_723bp 0 task Merging BAMs for CTE1_723bp waiting SYNCH_MERGE_BAM_CTE1_723bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE1_723bp SYNCH_MERGE_CTE1_723bp_DONE 0 synch sortMerge for CTE1_723bp waiting N/A TASKS (SORTED2BAM_CTE1_723bp[0],) buildSAMPLE_INDEX_GCCAAT/0000 0 task sortMerge to BAM for SAMPLE_INDEX_GCCAAT waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_GCCAAT' --binId=0000 --target=merge SYNCH_MERGE_BAM_SAMPLE_INDEX_GCCAAT_DONE 0 synch sortMerge to BAM for SAMPLE_INDEX_GCCAAT waiting N/A TASKS (buildSAMPLE_INDEX_GCCAAT/0000[0],) SORTED2BAM_SAMPLE_INDEX_GCCAAT 0 task Merging BAMs for SAMPLE_INDEX_GCCAAT waiting SYNCH_MERGE_BAM_SAMPLE_INDEX_GCCAAT_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_GCCAAT SYNCH_MERGE_SAMPLE_INDEX_GCCAAT_DONE 0 synch sortMerge for SAMPLE_INDEX_GCCAAT waiting N/A TASKS (SORTED2BAM_SAMPLE_INDEX_GCCAAT[0],) buildCTE1_123bp/0000 0 task sortMerge to BAM for CTE1_123bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_123bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTE1_123bp_DONE 0 synch sortMerge to BAM for CTE1_123bp waiting N/A TASKS (buildCTE1_123bp/0000[0],) SORTED2BAM_CTE1_123bp 0 task Merging BAMs for CTE1_123bp waiting SYNCH_MERGE_BAM_CTE1_123bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE1_123bp SYNCH_MERGE_CTE1_123bp_DONE 0 synch sortMerge for CTE1_123bp waiting N/A TASKS (SORTED2BAM_CTE1_123bp[0],) buildCTL_150bp/0000 0 task sortMerge to BAM for CTL_150bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_150bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTL_150bp_DONE 0 synch sortMerge to BAM for CTL_150bp waiting N/A TASKS (buildCTL_150bp/0000[0],) SORTED2BAM_CTL_150bp 0 task Merging BAMs for CTL_150bp waiting SYNCH_MERGE_BAM_CTL_150bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTL_150bp SYNCH_MERGE_CTL_150bp_DONE 0 synch sortMerge for CTL_150bp waiting N/A TASKS (SORTED2BAM_CTL_150bp[0],) buildCTE1_623bp/0000 0 task sortMerge to BAM for CTE1_623bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_623bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTE1_623bp_DONE 0 synch sortMerge to BAM for CTE1_623bp waiting N/A TASKS (buildCTE1_623bp/0000[0],) SORTED2BAM_CTE1_623bp 0 task Merging BAMs for CTE1_623bp waiting SYNCH_MERGE_BAM_CTE1_623bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE1_623bp SYNCH_MERGE_CTE1_623bp_DONE 0 synch sortMerge for CTE1_623bp waiting N/A TASKS (SORTED2BAM_CTE1_623bp[0],) buildCTE1_223bp/0000 0 task sortMerge to BAM for CTE1_223bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_223bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTE1_223bp_DONE 0 synch sortMerge to BAM for CTE1_223bp waiting N/A TASKS (buildCTE1_223bp/0000[0],) SORTED2BAM_CTE1_223bp 0 task Merging BAMs for CTE1_223bp waiting SYNCH_MERGE_BAM_CTE1_223bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE1_223bp SYNCH_MERGE_CTE1_223bp_DONE 0 synch sortMerge for CTE1_223bp waiting N/A TASKS (SORTED2BAM_CTE1_223bp[0],) buildCONTROL_INDEX/0000 0 task sortMerge to BAM for CONTROL_INDEX waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CONTROL_INDEX' --binId=0000 --target=merge SYNCH_MERGE_BAM_CONTROL_INDEX_DONE 0 synch sortMerge to BAM for CONTROL_INDEX waiting N/A TASKS (buildCONTROL_INDEX/0000[0],) SORTED2BAM_CONTROL_INDEX 0 task Merging BAMs for CONTROL_INDEX waiting SYNCH_MERGE_BAM_CONTROL_INDEX_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CONTROL_INDEX SYNCH_MERGE_CONTROL_INDEX_DONE 0 synch sortMerge for CONTROL_INDEX waiting N/A TASKS (SORTED2BAM_CONTROL_INDEX[0],) buildCTE1_323bp/0000 0 task sortMerge to BAM for CTE1_323bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_323bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTE1_323bp_DONE 0 synch sortMerge to BAM for CTE1_323bp waiting N/A TASKS (buildCTE1_323bp/0000[0],) SORTED2BAM_CTE1_323bp 0 task Merging BAMs for CTE1_323bp waiting SYNCH_MERGE_BAM_CTE1_323bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE1_323bp SYNCH_MERGE_CTE1_323bp_DONE 0 synch sortMerge for CTE1_323bp waiting N/A TASKS (SORTED2BAM_CTE1_323bp[0],) buildCTE2_650bp/0000 0 task sortMerge to BAM for CTE2_650bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_650bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTE2_650bp_DONE 0 synch sortMerge to BAM for CTE2_650bp waiting N/A TASKS (buildCTE2_650bp/0000[0],) SORTED2BAM_CTE2_650bp 0 task Merging BAMs for CTE2_650bp waiting SYNCH_MERGE_BAM_CTE2_650bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE2_650bp SYNCH_MERGE_CTE2_650bp_DONE 0 synch sortMerge for CTE2_650bp waiting N/A TASKS (SORTED2BAM_CTE2_650bp[0],) buildSAMPLE_INDEX_GATCAG/0000 0 task sortMerge to BAM for SAMPLE_INDEX_GATCAG waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_GATCAG' --binId=0000 --target=merge SYNCH_MERGE_BAM_SAMPLE_INDEX_GATCAG_DONE 0 synch sortMerge to BAM for SAMPLE_INDEX_GATCAG waiting N/A TASKS (buildSAMPLE_INDEX_GATCAG/0000[0],) SORTED2BAM_SAMPLE_INDEX_GATCAG 0 task Merging BAMs for SAMPLE_INDEX_GATCAG waiting SYNCH_MERGE_BAM_SAMPLE_INDEX_GATCAG_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_GATCAG SYNCH_MERGE_SAMPLE_INDEX_GATCAG_DONE 0 synch sortMerge for SAMPLE_INDEX_GATCAG waiting N/A TASKS (SORTED2BAM_SAMPLE_INDEX_GATCAG[0],) buildCTL_850bp/0000 0 task sortMerge to BAM for CTL_850bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_850bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTL_850bp_DONE 0 synch sortMerge to BAM for CTL_850bp waiting N/A TASKS (buildCTL_850bp/0000[0],) SORTED2BAM_CTL_850bp 0 task Merging BAMs for CTL_850bp waiting SYNCH_MERGE_BAM_CTL_850bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTL_850bp SYNCH_MERGE_CTL_850bp_DONE 0 synch sortMerge for CTL_850bp waiting N/A TASKS (SORTED2BAM_CTL_850bp[0],) buildCTL_450bp/0000 0 task sortMerge to BAM for CTL_450bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_450bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTL_450bp_DONE 0 synch sortMerge to BAM for CTL_450bp waiting N/A TASKS (buildCTL_450bp/0000[0],) SORTED2BAM_CTL_450bp 0 task Merging BAMs for CTL_450bp waiting SYNCH_MERGE_BAM_CTL_450bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTL_450bp SYNCH_MERGE_CTL_450bp_DONE 0 synch sortMerge for CTL_450bp waiting N/A TASKS (SORTED2BAM_CTL_450bp[0],) buildSAMPLE_INDEX_TTAGGC/0000 0 task sortMerge to BAM for SAMPLE_INDEX_TTAGGC waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_TTAGGC' --binId=0000 --target=merge SYNCH_MERGE_BAM_SAMPLE_INDEX_TTAGGC_DONE 0 synch sortMerge to BAM for SAMPLE_INDEX_TTAGGC waiting N/A TASKS (buildSAMPLE_INDEX_TTAGGC/0000[0],) SORTED2BAM_SAMPLE_INDEX_TTAGGC 0 task Merging BAMs for SAMPLE_INDEX_TTAGGC waiting SYNCH_MERGE_BAM_SAMPLE_INDEX_TTAGGC_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_TTAGGC SYNCH_MERGE_SAMPLE_INDEX_TTAGGC_DONE 0 synch sortMerge for SAMPLE_INDEX_TTAGGC waiting N/A TASKS (SORTED2BAM_SAMPLE_INDEX_TTAGGC[0],) buildSAMPLE_INDEX_ATCACG/0000 0 task sortMerge to BAM for SAMPLE_INDEX_ATCACG waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_ATCACG' --binId=0000 --target=merge SYNCH_MERGE_BAM_SAMPLE_INDEX_ATCACG_DONE 0 synch sortMerge to BAM for SAMPLE_INDEX_ATCACG waiting N/A TASKS (buildSAMPLE_INDEX_ATCACG/0000[0],) SORTED2BAM_SAMPLE_INDEX_ATCACG 0 task Merging BAMs for SAMPLE_INDEX_ATCACG waiting SYNCH_MERGE_BAM_SAMPLE_INDEX_ATCACG_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_ATCACG SYNCH_MERGE_SAMPLE_INDEX_ATCACG_DONE 0 synch sortMerge for SAMPLE_INDEX_ATCACG waiting N/A TASKS (SORTED2BAM_SAMPLE_INDEX_ATCACG[0],) buildSAMPLE_INDEX_TAGCTT/0000 0 task sortMerge to BAM for SAMPLE_INDEX_TAGCTT waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_TAGCTT' --binId=0000 --target=merge SYNCH_MERGE_BAM_SAMPLE_INDEX_TAGCTT_DONE 0 synch sortMerge to BAM for SAMPLE_INDEX_TAGCTT waiting N/A TASKS (buildSAMPLE_INDEX_TAGCTT/0000[0],) SORTED2BAM_SAMPLE_INDEX_TAGCTT 0 task Merging BAMs for SAMPLE_INDEX_TAGCTT waiting SYNCH_MERGE_BAM_SAMPLE_INDEX_TAGCTT_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_TAGCTT SYNCH_MERGE_SAMPLE_INDEX_TAGCTT_DONE 0 synch sortMerge for SAMPLE_INDEX_TAGCTT waiting N/A TASKS (SORTED2BAM_SAMPLE_INDEX_TAGCTT[0],) buildCTA_650bp/0000 0 task sortMerge to BAM for CTA_650bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_650bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTA_650bp_DONE 0 synch sortMerge to BAM for CTA_650bp waiting N/A TASKS (buildCTA_650bp/0000[0],) SORTED2BAM_CTA_650bp 0 task Merging BAMs for CTA_650bp waiting SYNCH_MERGE_BAM_CTA_650bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTA_650bp SYNCH_MERGE_CTA_650bp_DONE 0 synch sortMerge for CTA_650bp waiting N/A TASKS (SORTED2BAM_CTA_650bp[0],) buildCTA_850bp/0000 0 task sortMerge to BAM for CTA_850bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_850bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTA_850bp_DONE 0 synch sortMerge to BAM for CTA_850bp waiting N/A TASKS (buildCTA_850bp/0000[0],) SORTED2BAM_CTA_850bp 0 task Merging BAMs for CTA_850bp waiting SYNCH_MERGE_BAM_CTA_850bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTA_850bp SYNCH_MERGE_CTA_850bp_DONE 0 synch sortMerge for CTA_850bp waiting N/A TASKS (SORTED2BAM_CTA_850bp[0],) buildSAMPLE_INDEX_CGATGT/0000 0 task sortMerge to BAM for SAMPLE_INDEX_CGATGT waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_CGATGT' --binId=0000 --target=merge SYNCH_MERGE_BAM_SAMPLE_INDEX_CGATGT_DONE 0 synch sortMerge to BAM for SAMPLE_INDEX_CGATGT waiting N/A TASKS (buildSAMPLE_INDEX_CGATGT/0000[0],) SORTED2BAM_SAMPLE_INDEX_CGATGT 0 task Merging BAMs for SAMPLE_INDEX_CGATGT waiting SYNCH_MERGE_BAM_SAMPLE_INDEX_CGATGT_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_CGATGT SYNCH_MERGE_SAMPLE_INDEX_CGATGT_DONE 0 synch sortMerge for SAMPLE_INDEX_CGATGT waiting N/A TASKS (SORTED2BAM_SAMPLE_INDEX_CGATGT[0],) buildSAMPLE_INDEX_ACTTGA/0000 0 task sortMerge to BAM for SAMPLE_INDEX_ACTTGA waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_ACTTGA' --binId=0000 --target=merge SYNCH_MERGE_BAM_SAMPLE_INDEX_ACTTGA_DONE 0 synch sortMerge to BAM for SAMPLE_INDEX_ACTTGA waiting N/A TASKS (buildSAMPLE_INDEX_ACTTGA/0000[0],) SORTED2BAM_SAMPLE_INDEX_ACTTGA 0 task Merging BAMs for SAMPLE_INDEX_ACTTGA waiting SYNCH_MERGE_BAM_SAMPLE_INDEX_ACTTGA_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_ACTTGA SYNCH_MERGE_SAMPLE_INDEX_ACTTGA_DONE 0 synch sortMerge for SAMPLE_INDEX_ACTTGA waiting N/A TASKS (SORTED2BAM_SAMPLE_INDEX_ACTTGA[0],) buildCTA_250bp/0000 0 task sortMerge to BAM for CTA_250bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_250bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTA_250bp_DONE 0 synch sortMerge to BAM for CTA_250bp waiting N/A TASKS (buildCTA_250bp/0000[0],) SORTED2BAM_CTA_250bp 0 task Merging BAMs for CTA_250bp waiting SYNCH_MERGE_BAM_CTA_250bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTA_250bp SYNCH_MERGE_CTA_250bp_DONE 0 synch sortMerge for CTA_250bp waiting N/A TASKS (SORTED2BAM_CTA_250bp[0],) buildCTA_350bp/0000 0 task sortMerge to BAM for CTA_350bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_350bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTA_350bp_DONE 0 synch sortMerge to BAM for CTA_350bp waiting N/A TASKS (buildCTA_350bp/0000[0],) SORTED2BAM_CTA_350bp 0 task Merging BAMs for CTA_350bp waiting SYNCH_MERGE_BAM_CTA_350bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTA_350bp SYNCH_MERGE_CTA_350bp_DONE 0 synch sortMerge for CTA_350bp waiting N/A TASKS (SORTED2BAM_CTA_350bp[0],) buildCTA_550bp/0000 0 task sortMerge to BAM for CTA_550bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_550bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTA_550bp_DONE 0 synch sortMerge to BAM for CTA_550bp waiting N/A TASKS (buildCTA_550bp/0000[0],) SORTED2BAM_CTA_550bp 0 task Merging BAMs for CTA_550bp waiting SYNCH_MERGE_BAM_CTA_550bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTA_550bp SYNCH_MERGE_CTA_550bp_DONE 0 synch sortMerge for CTA_550bp waiting N/A TASKS (SORTED2BAM_CTA_550bp[0],) buildSAMPLE_INDEX_CTTGTA/0000 0 task sortMerge to BAM for SAMPLE_INDEX_CTTGTA waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_CTTGTA' --binId=0000 --target=merge SYNCH_MERGE_BAM_SAMPLE_INDEX_CTTGTA_DONE 0 synch sortMerge to BAM for SAMPLE_INDEX_CTTGTA waiting N/A TASKS (buildSAMPLE_INDEX_CTTGTA/0000[0],) SORTED2BAM_SAMPLE_INDEX_CTTGTA 0 task Merging BAMs for SAMPLE_INDEX_CTTGTA waiting SYNCH_MERGE_BAM_SAMPLE_INDEX_CTTGTA_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_CTTGTA SYNCH_MERGE_SAMPLE_INDEX_CTTGTA_DONE 0 synch sortMerge for SAMPLE_INDEX_CTTGTA waiting N/A TASKS (SORTED2BAM_SAMPLE_INDEX_CTTGTA[0],) buildCTE1_823bp/0000 0 task sortMerge to BAM for CTE1_823bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_823bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTE1_823bp_DONE 0 synch sortMerge to BAM for CTE1_823bp waiting N/A TASKS (buildCTE1_823bp/0000[0],) SORTED2BAM_CTE1_823bp 0 task Merging BAMs for CTE1_823bp waiting SYNCH_MERGE_BAM_CTE1_823bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE1_823bp SYNCH_MERGE_CTE1_823bp_DONE 0 synch sortMerge for CTE1_823bp waiting N/A TASKS (SORTED2BAM_CTE1_823bp[0],) buildTAGSET1/0000 0 task sortMerge to BAM for TAGSET1 waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='TAGSET1' --binId=0000 --target=merge SYNCH_MERGE_BAM_TAGSET1_DONE 0 synch sortMerge to BAM for TAGSET1 waiting N/A TASKS (buildTAGSET1/0000[0],) SORTED2BAM_TAGSET1 0 task Merging BAMs for TAGSET1 waiting SYNCH_MERGE_BAM_TAGSET1_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=TAGSET1 SYNCH_MERGE_TAGSET1_DONE 0 synch sortMerge for TAGSET1 waiting N/A TASKS (SORTED2BAM_TAGSET1[0],) buildCTE2_350bp/0000 0 task sortMerge to BAM for CTE2_350bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_350bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTE2_350bp_DONE 0 synch sortMerge to BAM for CTE2_350bp waiting N/A TASKS (buildCTE2_350bp/0000[0],) SORTED2BAM_CTE2_350bp 0 task Merging BAMs for CTE2_350bp waiting SYNCH_MERGE_BAM_CTE2_350bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE2_350bp SYNCH_MERGE_CTE2_350bp_DONE 0 synch sortMerge for CTE2_350bp waiting N/A TASKS (SORTED2BAM_CTE2_350bp[0],) buildCTL_750bp/0000 0 task sortMerge to BAM for CTL_750bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_750bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTL_750bp_DONE 0 synch sortMerge to BAM for CTL_750bp waiting N/A TASKS (buildCTL_750bp/0000[0],) SORTED2BAM_CTL_750bp 0 task Merging BAMs for CTL_750bp waiting SYNCH_MERGE_BAM_CTL_750bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTL_750bp SYNCH_MERGE_CTL_750bp_DONE 0 synch sortMerge for CTL_750bp waiting N/A TASKS (SORTED2BAM_CTL_750bp[0],) buildCTL_350bp/0000 0 task sortMerge to BAM for CTL_350bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_350bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTL_350bp_DONE 0 synch sortMerge to BAM for CTL_350bp waiting N/A TASKS (buildCTL_350bp/0000[0],) SORTED2BAM_CTL_350bp 0 task Merging BAMs for CTL_350bp waiting SYNCH_MERGE_BAM_CTL_350bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTL_350bp SYNCH_MERGE_CTL_350bp_DONE 0 synch sortMerge for CTL_350bp waiting N/A TASKS (SORTED2BAM_CTL_350bp[0],) buildCTL_250bp/0000 0 task sortMerge to BAM for CTL_250bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_250bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTL_250bp_DONE 0 synch sortMerge to BAM for CTL_250bp waiting N/A TASKS (buildCTL_250bp/0000[0],) SORTED2BAM_CTL_250bp 0 task Merging BAMs for CTL_250bp waiting SYNCH_MERGE_BAM_CTL_250bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTL_250bp SYNCH_MERGE_CTL_250bp_DONE 0 synch sortMerge for CTL_250bp waiting N/A TASKS (SORTED2BAM_CTL_250bp[0],) buildCTE2_850bp/0000 0 task sortMerge to BAM for CTE2_850bp waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_850bp' --binId=0000 --target=merge SYNCH_MERGE_BAM_CTE2_850bp_DONE 0 synch sortMerge to BAM for CTE2_850bp waiting N/A TASKS (buildCTE2_850bp/0000[0],) SORTED2BAM_CTE2_850bp 0 task Merging BAMs for CTE2_850bp waiting SYNCH_MERGE_BAM_CTE2_850bp_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE2_850bp SYNCH_MERGE_CTE2_850bp_DONE 0 synch sortMerge for CTE2_850bp waiting N/A TASKS (SORTED2BAM_CTE2_850bp[0],) buildSAMPLE_INDEX_GGCTAC/0000 0 task sortMerge to BAM for SAMPLE_INDEX_GGCTAC waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_GGCTAC' --binId=0000 --target=merge SYNCH_MERGE_BAM_SAMPLE_INDEX_GGCTAC_DONE 0 synch sortMerge to BAM for SAMPLE_INDEX_GGCTAC waiting N/A TASKS (buildSAMPLE_INDEX_GGCTAC/0000[0],) SORTED2BAM_SAMPLE_INDEX_GGCTAC 0 task Merging BAMs for SAMPLE_INDEX_GGCTAC waiting SYNCH_MERGE_BAM_SAMPLE_INDEX_GGCTAC_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_GGCTAC SYNCH_MERGE_SAMPLE_INDEX_GGCTAC_DONE 0 synch sortMerge for SAMPLE_INDEX_GGCTAC waiting N/A TASKS (SORTED2BAM_SAMPLE_INDEX_GGCTAC[0],) buildSAMPLE_INDEX_TGACCA/0000 0 task sortMerge to BAM for SAMPLE_INDEX_TGACCA waiting SYNCH_SORT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_TGACCA' --binId=0000 --target=merge SYNCH_MERGE_BAM_SAMPLE_INDEX_TGACCA_DONE 0 synch sortMerge to BAM for SAMPLE_INDEX_TGACCA waiting N/A TASKS (buildSAMPLE_INDEX_TGACCA/0000[0],) SORTED2BAM_SAMPLE_INDEX_TGACCA 0 task Merging BAMs for SAMPLE_INDEX_TGACCA waiting SYNCH_MERGE_BAM_SAMPLE_INDEX_TGACCA_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/concatChromBam.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_TGACCA SYNCH_MERGE_SAMPLE_INDEX_TGACCA_DONE 0 synch sortMerge for SAMPLE_INDEX_TGACCA waiting N/A TASKS (SORTED2BAM_SAMPLE_INDEX_TGACCA[0],) SYNCH_MERGE_BAM_DONE 0 synch sortMerge to BAM waiting N/A TASKS (SYNCH_MERGE_BAM_SAMPLE_INDEX_CAGATC_DONE[0],SYNCH_MERGE_BAM_CTE2_550bp_DONE[0],SYNCH_MERGE_BAM_CTE2_450bp_DONE[0],SYNCH_MERGE_BAM_CTE2_250bp_DONE[0],SYNCH_MERGE_BAM_CTE1_423bp_DONE[0],SYNCH_MERGE_BAM_CTE2_750bp_DONE[0],SYNCH_MERGE_BAM_SAMPLE_INDEX_ACAGTG_DONE[0],SYNCH_MERGE_BAM_CTA_450bp_DONE[0],SYNCH_MERGE_BAM_CTL_550bp_DONE[0],SYNCH_MERGE_BAM_CTE1_523bp_DONE[0],SYNCH_MERGE_BAM_phi_DONE[0],SYNCH_MERGE_BAM_CTE2_150bp_DONE[0],SYNCH_MERGE_BAM_CTL_650bp_DONE[0],SYNCH_MERGE_BAM_CTA_150bp_DONE[0],SYNCH_MERGE_BAM_CTA_750bp_DONE[0],SYNCH_MERGE_BAM_CTE1_723bp_DONE[0],SYNCH_MERGE_BAM_SAMPLE_INDEX_GCCAAT_DONE[0],SYNCH_MERGE_BAM_CTE1_123bp_DONE[0],SYNCH_MERGE_BAM_CTL_150bp_DONE[0],SYNCH_MERGE_BAM_CTE1_623bp_DONE[0],SYNCH_MERGE_BAM_CTE1_223bp_DONE[0],SYNCH_MERGE_BAM_CONTROL_INDEX_DONE[0],SYNCH_MERGE_BAM_CTE1_323bp_DONE[0],SYNCH_MERGE_BAM_CTE2_650bp_DONE[0],SYNCH_MERGE_BAM_SAMPLE_INDEX_GATCAG_DONE[0],SYNCH_MERGE_BAM_CTL_850bp_DONE[0],SYNCH_MERGE_BAM_CTL_450bp_DONE[0],SYNCH_MERGE_BAM_SAMPLE_INDEX_TTAGGC_DONE[0],SYNCH_MERGE_BAM_SAMPLE_INDEX_ATCACG_DONE[0],SYNCH_MERGE_BAM_SAMPLE_INDEX_TAGCTT_DONE[0],SYNCH_MERGE_BAM_CTA_650bp_DONE[0],SYNCH_MERGE_BAM_CTA_850bp_DONE[0],SYNCH_MERGE_BAM_SAMPLE_INDEX_CGATGT_DONE[0],SYNCH_MERGE_BAM_SAMPLE_INDEX_ACTTGA_DONE[0],SYNCH_MERGE_BAM_CTA_250bp_DONE[0],SYNCH_MERGE_BAM_CTA_350bp_DONE[0],SYNCH_MERGE_BAM_CTA_550bp_DONE[0],SYNCH_MERGE_BAM_SAMPLE_INDEX_CTTGTA_DONE[0],SYNCH_MERGE_BAM_CTE1_823bp_DONE[0],SYNCH_MERGE_BAM_TAGSET1_DONE[0],SYNCH_MERGE_BAM_CTE2_350bp_DONE[0],SYNCH_MERGE_BAM_CTL_750bp_DONE[0],SYNCH_MERGE_BAM_CTL_350bp_DONE[0],SYNCH_MERGE_BAM_CTL_250bp_DONE[0],SYNCH_MERGE_BAM_CTE2_850bp_DONE[0],SYNCH_MERGE_BAM_SAMPLE_INDEX_GGCTAC_DONE[0],SYNCH_MERGE_BAM_SAMPLE_INDEX_TGACCA_DONE[0],) SYNCH_SORT2 1 task sortRemoveTemps waiting SYNCH_MERGE_BAM_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/splitUnSorted.pl --projectDir='/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4' --target=removeTemps SYNCH_MERGE_DONE 0 synch sortMerge waiting N/A TASKS (SYNCH_MERGE_SAMPLE_INDEX_CAGATC_DONE[0],SYNCH_MERGE_CTE2_550bp_DONE[0],SYNCH_MERGE_CTE2_450bp_DONE[0],SYNCH_MERGE_CTE2_250bp_DONE[0],SYNCH_MERGE_CTE1_423bp_DONE[0],SYNCH_MERGE_CTE2_750bp_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_ACAGTG_DONE[0],SYNCH_MERGE_CTA_450bp_DONE[0],SYNCH_MERGE_CTL_550bp_DONE[0],SYNCH_MERGE_CTE1_523bp_DONE[0],SYNCH_MERGE_phi_DONE[0],SYNCH_MERGE_CTE2_150bp_DONE[0],SYNCH_MERGE_CTL_650bp_DONE[0],SYNCH_MERGE_CTA_150bp_DONE[0],SYNCH_MERGE_CTA_750bp_DONE[0],SYNCH_MERGE_CTE1_723bp_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_GCCAAT_DONE[0],SYNCH_MERGE_CTE1_123bp_DONE[0],SYNCH_MERGE_CTL_150bp_DONE[0],SYNCH_MERGE_CTE1_623bp_DONE[0],SYNCH_MERGE_CTE1_223bp_DONE[0],SYNCH_MERGE_CONTROL_INDEX_DONE[0],SYNCH_MERGE_CTE1_323bp_DONE[0],SYNCH_MERGE_CTE2_650bp_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_GATCAG_DONE[0],SYNCH_MERGE_CTL_850bp_DONE[0],SYNCH_MERGE_CTL_450bp_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_TTAGGC_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_ATCACG_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_TAGCTT_DONE[0],SYNCH_MERGE_CTA_650bp_DONE[0],SYNCH_MERGE_CTA_850bp_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_CGATGT_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_ACTTGA_DONE[0],SYNCH_MERGE_CTA_250bp_DONE[0],SYNCH_MERGE_CTA_350bp_DONE[0],SYNCH_MERGE_CTA_550bp_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_CTTGTA_DONE[0],SYNCH_MERGE_CTE1_823bp_DONE[0],SYNCH_MERGE_TAGSET1_DONE[0],SYNCH_MERGE_CTE2_350bp_DONE[0],SYNCH_MERGE_CTL_750bp_DONE[0],SYNCH_MERGE_CTL_350bp_DONE[0],SYNCH_MERGE_CTL_250bp_DONE[0],SYNCH_MERGE_CTE2_850bp_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_GGCTAC_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_TGACCA_DONE[0],) PREREQ_refSeq_DONE 0 synch RefSeq prerequisites waiting N/A TASKS (SYNCH_EXPORT1[0],) SPLIT_REF_SEQ 0 task Split reference waiting PREREQ_refSeq_DONE /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/transformFasta.pl --chromNameSource=contigName --targetPath=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4/cachedRefSeq /illumina/development/casava/Version_1_8_branch/share/CASAVA-1.8.2/examples/Validation/100723_EAS346_0188_FC626BWAAXX/Data/Intensities/BaseCalls/controls.fasta && /illumina/development/casava/Version_1_8_branch/bin/configureBuild.pl --chromNameSource=fileName --refSequences=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4/cachedRefSeq --maskRefSeqFiles='*' --outDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --targets continue refSeq_DONE 0 synch Split reference into single-entry fastas. waiting N/A TASKS (SPLIT_REF_SEQ[0],) PREREQ_INDEL_FINDER_SAMPLE_INDEX_CAGATC/0000 0 synch Indel finder prereq for SAMPLE_INDEX_CAGATC/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_CAGATC_DONE[0],) INDEL_FINDER_SAMPLE_INDEX_CAGATC/0000 0 task GROUPER SAMPLE_INDEX_CAGATC 0000 waiting PREREQ_INDEL_FINDER_SAMPLE_INDEX_CAGATC/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_CAGATC --binId=0000 INDEL_FINDER_SAMPLE_INDEX_CAGATC 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_SAMPLE_INDEX_CAGATC/0000[0],) PREREQ_INDEL_FINDER_CTE2_550bp/0000 0 synch Indel finder prereq for CTE2_550bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE2_550bp_DONE[0],) INDEL_FINDER_CTE2_550bp/0000 0 task GROUPER CTE2_550bp 0000 waiting PREREQ_INDEL_FINDER_CTE2_550bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE2_550bp --binId=0000 INDEL_FINDER_CTE2_550bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTE2_550bp/0000[0],) PREREQ_INDEL_FINDER_CTE2_450bp/0000 0 synch Indel finder prereq for CTE2_450bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE2_450bp_DONE[0],) INDEL_FINDER_CTE2_450bp/0000 0 task GROUPER CTE2_450bp 0000 waiting PREREQ_INDEL_FINDER_CTE2_450bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE2_450bp --binId=0000 INDEL_FINDER_CTE2_450bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTE2_450bp/0000[0],) PREREQ_INDEL_FINDER_CTE2_250bp/0000 0 synch Indel finder prereq for CTE2_250bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE2_250bp_DONE[0],) INDEL_FINDER_CTE2_250bp/0000 0 task GROUPER CTE2_250bp 0000 waiting PREREQ_INDEL_FINDER_CTE2_250bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE2_250bp --binId=0000 INDEL_FINDER_CTE2_250bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTE2_250bp/0000[0],) PREREQ_INDEL_FINDER_CTE1_423bp/0000 0 synch Indel finder prereq for CTE1_423bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE1_423bp_DONE[0],) INDEL_FINDER_CTE1_423bp/0000 0 task GROUPER CTE1_423bp 0000 waiting PREREQ_INDEL_FINDER_CTE1_423bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE1_423bp --binId=0000 INDEL_FINDER_CTE1_423bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTE1_423bp/0000[0],) PREREQ_INDEL_FINDER_CTE2_750bp/0000 0 synch Indel finder prereq for CTE2_750bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE2_750bp_DONE[0],) INDEL_FINDER_CTE2_750bp/0000 0 task GROUPER CTE2_750bp 0000 waiting PREREQ_INDEL_FINDER_CTE2_750bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE2_750bp --binId=0000 INDEL_FINDER_CTE2_750bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTE2_750bp/0000[0],) PREREQ_INDEL_FINDER_SAMPLE_INDEX_ACAGTG/0000 0 synch Indel finder prereq for SAMPLE_INDEX_ACAGTG/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_ACAGTG_DONE[0],) INDEL_FINDER_SAMPLE_INDEX_ACAGTG/0000 0 task GROUPER SAMPLE_INDEX_ACAGTG 0000 waiting PREREQ_INDEL_FINDER_SAMPLE_INDEX_ACAGTG/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_ACAGTG --binId=0000 INDEL_FINDER_SAMPLE_INDEX_ACAGTG 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_SAMPLE_INDEX_ACAGTG/0000[0],) PREREQ_INDEL_FINDER_CTA_450bp/0000 0 synch Indel finder prereq for CTA_450bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTA_450bp_DONE[0],) INDEL_FINDER_CTA_450bp/0000 0 task GROUPER CTA_450bp 0000 waiting PREREQ_INDEL_FINDER_CTA_450bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTA_450bp --binId=0000 INDEL_FINDER_CTA_450bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTA_450bp/0000[0],) PREREQ_INDEL_FINDER_CTL_550bp/0000 0 synch Indel finder prereq for CTL_550bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTL_550bp_DONE[0],) INDEL_FINDER_CTL_550bp/0000 0 task GROUPER CTL_550bp 0000 waiting PREREQ_INDEL_FINDER_CTL_550bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTL_550bp --binId=0000 INDEL_FINDER_CTL_550bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTL_550bp/0000[0],) PREREQ_INDEL_FINDER_CTE1_523bp/0000 0 synch Indel finder prereq for CTE1_523bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE1_523bp_DONE[0],) INDEL_FINDER_CTE1_523bp/0000 0 task GROUPER CTE1_523bp 0000 waiting PREREQ_INDEL_FINDER_CTE1_523bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE1_523bp --binId=0000 INDEL_FINDER_CTE1_523bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTE1_523bp/0000[0],) PREREQ_INDEL_FINDER_phi/0000 0 synch Indel finder prereq for phi/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_phi_DONE[0],) INDEL_FINDER_phi/0000 0 task GROUPER phi 0000 waiting PREREQ_INDEL_FINDER_phi/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=phi --binId=0000 INDEL_FINDER_phi 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_phi/0000[0],) PREREQ_INDEL_FINDER_CTE2_150bp/0000 0 synch Indel finder prereq for CTE2_150bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE2_150bp_DONE[0],) INDEL_FINDER_CTE2_150bp/0000 0 task GROUPER CTE2_150bp 0000 waiting PREREQ_INDEL_FINDER_CTE2_150bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE2_150bp --binId=0000 INDEL_FINDER_CTE2_150bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTE2_150bp/0000[0],) PREREQ_INDEL_FINDER_CTL_650bp/0000 0 synch Indel finder prereq for CTL_650bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTL_650bp_DONE[0],) INDEL_FINDER_CTL_650bp/0000 0 task GROUPER CTL_650bp 0000 waiting PREREQ_INDEL_FINDER_CTL_650bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTL_650bp --binId=0000 INDEL_FINDER_CTL_650bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTL_650bp/0000[0],) PREREQ_INDEL_FINDER_CTA_150bp/0000 0 synch Indel finder prereq for CTA_150bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTA_150bp_DONE[0],) INDEL_FINDER_CTA_150bp/0000 0 task GROUPER CTA_150bp 0000 waiting PREREQ_INDEL_FINDER_CTA_150bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTA_150bp --binId=0000 INDEL_FINDER_CTA_150bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTA_150bp/0000[0],) PREREQ_INDEL_FINDER_CTA_750bp/0000 0 synch Indel finder prereq for CTA_750bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTA_750bp_DONE[0],) INDEL_FINDER_CTA_750bp/0000 0 task GROUPER CTA_750bp 0000 waiting PREREQ_INDEL_FINDER_CTA_750bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTA_750bp --binId=0000 INDEL_FINDER_CTA_750bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTA_750bp/0000[0],) PREREQ_INDEL_FINDER_CTE1_723bp/0000 0 synch Indel finder prereq for CTE1_723bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE1_723bp_DONE[0],) INDEL_FINDER_CTE1_723bp/0000 0 task GROUPER CTE1_723bp 0000 waiting PREREQ_INDEL_FINDER_CTE1_723bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE1_723bp --binId=0000 INDEL_FINDER_CTE1_723bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTE1_723bp/0000[0],) PREREQ_INDEL_FINDER_SAMPLE_INDEX_GCCAAT/0000 0 synch Indel finder prereq for SAMPLE_INDEX_GCCAAT/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_GCCAAT_DONE[0],) INDEL_FINDER_SAMPLE_INDEX_GCCAAT/0000 0 task GROUPER SAMPLE_INDEX_GCCAAT 0000 waiting PREREQ_INDEL_FINDER_SAMPLE_INDEX_GCCAAT/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_GCCAAT --binId=0000 INDEL_FINDER_SAMPLE_INDEX_GCCAAT 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_SAMPLE_INDEX_GCCAAT/0000[0],) PREREQ_INDEL_FINDER_CTE1_123bp/0000 0 synch Indel finder prereq for CTE1_123bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE1_123bp_DONE[0],) INDEL_FINDER_CTE1_123bp/0000 0 task GROUPER CTE1_123bp 0000 waiting PREREQ_INDEL_FINDER_CTE1_123bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE1_123bp --binId=0000 INDEL_FINDER_CTE1_123bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTE1_123bp/0000[0],) PREREQ_INDEL_FINDER_CTL_150bp/0000 0 synch Indel finder prereq for CTL_150bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTL_150bp_DONE[0],) INDEL_FINDER_CTL_150bp/0000 0 task GROUPER CTL_150bp 0000 waiting PREREQ_INDEL_FINDER_CTL_150bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTL_150bp --binId=0000 INDEL_FINDER_CTL_150bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTL_150bp/0000[0],) PREREQ_INDEL_FINDER_CTE1_623bp/0000 0 synch Indel finder prereq for CTE1_623bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE1_623bp_DONE[0],) INDEL_FINDER_CTE1_623bp/0000 0 task GROUPER CTE1_623bp 0000 waiting PREREQ_INDEL_FINDER_CTE1_623bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE1_623bp --binId=0000 INDEL_FINDER_CTE1_623bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTE1_623bp/0000[0],) PREREQ_INDEL_FINDER_CTE1_223bp/0000 0 synch Indel finder prereq for CTE1_223bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE1_223bp_DONE[0],) INDEL_FINDER_CTE1_223bp/0000 0 task GROUPER CTE1_223bp 0000 waiting PREREQ_INDEL_FINDER_CTE1_223bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE1_223bp --binId=0000 INDEL_FINDER_CTE1_223bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTE1_223bp/0000[0],) PREREQ_INDEL_FINDER_CONTROL_INDEX/0000 0 synch Indel finder prereq for CONTROL_INDEX/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CONTROL_INDEX_DONE[0],) INDEL_FINDER_CONTROL_INDEX/0000 0 task GROUPER CONTROL_INDEX 0000 waiting PREREQ_INDEL_FINDER_CONTROL_INDEX/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CONTROL_INDEX --binId=0000 INDEL_FINDER_CONTROL_INDEX 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CONTROL_INDEX/0000[0],) PREREQ_INDEL_FINDER_CTE1_323bp/0000 0 synch Indel finder prereq for CTE1_323bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE1_323bp_DONE[0],) INDEL_FINDER_CTE1_323bp/0000 0 task GROUPER CTE1_323bp 0000 waiting PREREQ_INDEL_FINDER_CTE1_323bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE1_323bp --binId=0000 INDEL_FINDER_CTE1_323bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTE1_323bp/0000[0],) PREREQ_INDEL_FINDER_CTE2_650bp/0000 0 synch Indel finder prereq for CTE2_650bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE2_650bp_DONE[0],) INDEL_FINDER_CTE2_650bp/0000 0 task GROUPER CTE2_650bp 0000 waiting PREREQ_INDEL_FINDER_CTE2_650bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE2_650bp --binId=0000 INDEL_FINDER_CTE2_650bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTE2_650bp/0000[0],) PREREQ_INDEL_FINDER_SAMPLE_INDEX_GATCAG/0000 0 synch Indel finder prereq for SAMPLE_INDEX_GATCAG/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_GATCAG_DONE[0],) INDEL_FINDER_SAMPLE_INDEX_GATCAG/0000 0 task GROUPER SAMPLE_INDEX_GATCAG 0000 waiting PREREQ_INDEL_FINDER_SAMPLE_INDEX_GATCAG/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_GATCAG --binId=0000 INDEL_FINDER_SAMPLE_INDEX_GATCAG 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_SAMPLE_INDEX_GATCAG/0000[0],) PREREQ_INDEL_FINDER_CTL_850bp/0000 0 synch Indel finder prereq for CTL_850bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTL_850bp_DONE[0],) INDEL_FINDER_CTL_850bp/0000 0 task GROUPER CTL_850bp 0000 waiting PREREQ_INDEL_FINDER_CTL_850bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTL_850bp --binId=0000 INDEL_FINDER_CTL_850bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTL_850bp/0000[0],) PREREQ_INDEL_FINDER_CTL_450bp/0000 0 synch Indel finder prereq for CTL_450bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTL_450bp_DONE[0],) INDEL_FINDER_CTL_450bp/0000 0 task GROUPER CTL_450bp 0000 waiting PREREQ_INDEL_FINDER_CTL_450bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTL_450bp --binId=0000 INDEL_FINDER_CTL_450bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTL_450bp/0000[0],) PREREQ_INDEL_FINDER_SAMPLE_INDEX_TTAGGC/0000 0 synch Indel finder prereq for SAMPLE_INDEX_TTAGGC/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_TTAGGC_DONE[0],) INDEL_FINDER_SAMPLE_INDEX_TTAGGC/0000 0 task GROUPER SAMPLE_INDEX_TTAGGC 0000 waiting PREREQ_INDEL_FINDER_SAMPLE_INDEX_TTAGGC/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_TTAGGC --binId=0000 INDEL_FINDER_SAMPLE_INDEX_TTAGGC 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_SAMPLE_INDEX_TTAGGC/0000[0],) PREREQ_INDEL_FINDER_SAMPLE_INDEX_ATCACG/0000 0 synch Indel finder prereq for SAMPLE_INDEX_ATCACG/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_ATCACG_DONE[0],) INDEL_FINDER_SAMPLE_INDEX_ATCACG/0000 0 task GROUPER SAMPLE_INDEX_ATCACG 0000 waiting PREREQ_INDEL_FINDER_SAMPLE_INDEX_ATCACG/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_ATCACG --binId=0000 INDEL_FINDER_SAMPLE_INDEX_ATCACG 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_SAMPLE_INDEX_ATCACG/0000[0],) PREREQ_INDEL_FINDER_SAMPLE_INDEX_TAGCTT/0000 0 synch Indel finder prereq for SAMPLE_INDEX_TAGCTT/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_TAGCTT_DONE[0],) INDEL_FINDER_SAMPLE_INDEX_TAGCTT/0000 0 task GROUPER SAMPLE_INDEX_TAGCTT 0000 waiting PREREQ_INDEL_FINDER_SAMPLE_INDEX_TAGCTT/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_TAGCTT --binId=0000 INDEL_FINDER_SAMPLE_INDEX_TAGCTT 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_SAMPLE_INDEX_TAGCTT/0000[0],) PREREQ_INDEL_FINDER_CTA_650bp/0000 0 synch Indel finder prereq for CTA_650bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTA_650bp_DONE[0],) INDEL_FINDER_CTA_650bp/0000 0 task GROUPER CTA_650bp 0000 waiting PREREQ_INDEL_FINDER_CTA_650bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTA_650bp --binId=0000 INDEL_FINDER_CTA_650bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTA_650bp/0000[0],) PREREQ_INDEL_FINDER_CTA_850bp/0000 0 synch Indel finder prereq for CTA_850bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTA_850bp_DONE[0],) INDEL_FINDER_CTA_850bp/0000 0 task GROUPER CTA_850bp 0000 waiting PREREQ_INDEL_FINDER_CTA_850bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTA_850bp --binId=0000 INDEL_FINDER_CTA_850bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTA_850bp/0000[0],) PREREQ_INDEL_FINDER_SAMPLE_INDEX_CGATGT/0000 0 synch Indel finder prereq for SAMPLE_INDEX_CGATGT/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_CGATGT_DONE[0],) INDEL_FINDER_SAMPLE_INDEX_CGATGT/0000 0 task GROUPER SAMPLE_INDEX_CGATGT 0000 waiting PREREQ_INDEL_FINDER_SAMPLE_INDEX_CGATGT/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_CGATGT --binId=0000 INDEL_FINDER_SAMPLE_INDEX_CGATGT 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_SAMPLE_INDEX_CGATGT/0000[0],) PREREQ_INDEL_FINDER_SAMPLE_INDEX_ACTTGA/0000 0 synch Indel finder prereq for SAMPLE_INDEX_ACTTGA/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_ACTTGA_DONE[0],) INDEL_FINDER_SAMPLE_INDEX_ACTTGA/0000 0 task GROUPER SAMPLE_INDEX_ACTTGA 0000 waiting PREREQ_INDEL_FINDER_SAMPLE_INDEX_ACTTGA/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_ACTTGA --binId=0000 INDEL_FINDER_SAMPLE_INDEX_ACTTGA 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_SAMPLE_INDEX_ACTTGA/0000[0],) PREREQ_INDEL_FINDER_CTA_250bp/0000 0 synch Indel finder prereq for CTA_250bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTA_250bp_DONE[0],) INDEL_FINDER_CTA_250bp/0000 0 task GROUPER CTA_250bp 0000 waiting PREREQ_INDEL_FINDER_CTA_250bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTA_250bp --binId=0000 INDEL_FINDER_CTA_250bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTA_250bp/0000[0],) PREREQ_INDEL_FINDER_CTA_350bp/0000 0 synch Indel finder prereq for CTA_350bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTA_350bp_DONE[0],) INDEL_FINDER_CTA_350bp/0000 0 task GROUPER CTA_350bp 0000 waiting PREREQ_INDEL_FINDER_CTA_350bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTA_350bp --binId=0000 INDEL_FINDER_CTA_350bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTA_350bp/0000[0],) PREREQ_INDEL_FINDER_CTA_550bp/0000 0 synch Indel finder prereq for CTA_550bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTA_550bp_DONE[0],) INDEL_FINDER_CTA_550bp/0000 0 task GROUPER CTA_550bp 0000 waiting PREREQ_INDEL_FINDER_CTA_550bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTA_550bp --binId=0000 INDEL_FINDER_CTA_550bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTA_550bp/0000[0],) PREREQ_INDEL_FINDER_SAMPLE_INDEX_CTTGTA/0000 0 synch Indel finder prereq for SAMPLE_INDEX_CTTGTA/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_CTTGTA_DONE[0],) INDEL_FINDER_SAMPLE_INDEX_CTTGTA/0000 0 task GROUPER SAMPLE_INDEX_CTTGTA 0000 waiting PREREQ_INDEL_FINDER_SAMPLE_INDEX_CTTGTA/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_CTTGTA --binId=0000 INDEL_FINDER_SAMPLE_INDEX_CTTGTA 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_SAMPLE_INDEX_CTTGTA/0000[0],) PREREQ_INDEL_FINDER_CTE1_823bp/0000 0 synch Indel finder prereq for CTE1_823bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE1_823bp_DONE[0],) INDEL_FINDER_CTE1_823bp/0000 0 task GROUPER CTE1_823bp 0000 waiting PREREQ_INDEL_FINDER_CTE1_823bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE1_823bp --binId=0000 INDEL_FINDER_CTE1_823bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTE1_823bp/0000[0],) PREREQ_INDEL_FINDER_TAGSET1/0000 0 synch Indel finder prereq for TAGSET1/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_TAGSET1_DONE[0],) INDEL_FINDER_TAGSET1/0000 0 task GROUPER TAGSET1 0000 waiting PREREQ_INDEL_FINDER_TAGSET1/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=TAGSET1 --binId=0000 INDEL_FINDER_TAGSET1 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_TAGSET1/0000[0],) PREREQ_INDEL_FINDER_CTE2_350bp/0000 0 synch Indel finder prereq for CTE2_350bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE2_350bp_DONE[0],) INDEL_FINDER_CTE2_350bp/0000 0 task GROUPER CTE2_350bp 0000 waiting PREREQ_INDEL_FINDER_CTE2_350bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE2_350bp --binId=0000 INDEL_FINDER_CTE2_350bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTE2_350bp/0000[0],) PREREQ_INDEL_FINDER_CTL_750bp/0000 0 synch Indel finder prereq for CTL_750bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTL_750bp_DONE[0],) INDEL_FINDER_CTL_750bp/0000 0 task GROUPER CTL_750bp 0000 waiting PREREQ_INDEL_FINDER_CTL_750bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTL_750bp --binId=0000 INDEL_FINDER_CTL_750bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTL_750bp/0000[0],) PREREQ_INDEL_FINDER_CTL_350bp/0000 0 synch Indel finder prereq for CTL_350bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTL_350bp_DONE[0],) INDEL_FINDER_CTL_350bp/0000 0 task GROUPER CTL_350bp 0000 waiting PREREQ_INDEL_FINDER_CTL_350bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTL_350bp --binId=0000 INDEL_FINDER_CTL_350bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTL_350bp/0000[0],) PREREQ_INDEL_FINDER_CTL_250bp/0000 0 synch Indel finder prereq for CTL_250bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTL_250bp_DONE[0],) INDEL_FINDER_CTL_250bp/0000 0 task GROUPER CTL_250bp 0000 waiting PREREQ_INDEL_FINDER_CTL_250bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTL_250bp --binId=0000 INDEL_FINDER_CTL_250bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTL_250bp/0000[0],) PREREQ_INDEL_FINDER_CTE2_850bp/0000 0 synch Indel finder prereq for CTE2_850bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE2_850bp_DONE[0],) INDEL_FINDER_CTE2_850bp/0000 0 task GROUPER CTE2_850bp 0000 waiting PREREQ_INDEL_FINDER_CTE2_850bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=CTE2_850bp --binId=0000 INDEL_FINDER_CTE2_850bp 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_CTE2_850bp/0000[0],) PREREQ_INDEL_FINDER_SAMPLE_INDEX_GGCTAC/0000 0 synch Indel finder prereq for SAMPLE_INDEX_GGCTAC/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_GGCTAC_DONE[0],) INDEL_FINDER_SAMPLE_INDEX_GGCTAC/0000 0 task GROUPER SAMPLE_INDEX_GGCTAC 0000 waiting PREREQ_INDEL_FINDER_SAMPLE_INDEX_GGCTAC/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_GGCTAC --binId=0000 INDEL_FINDER_SAMPLE_INDEX_GGCTAC 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_SAMPLE_INDEX_GGCTAC/0000[0],) PREREQ_INDEL_FINDER_SAMPLE_INDEX_TGACCA/0000 0 synch Indel finder prereq for SAMPLE_INDEX_TGACCA/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_TGACCA_DONE[0],) INDEL_FINDER_SAMPLE_INDEX_TGACCA/0000 0 task GROUPER SAMPLE_INDEX_TGACCA 0000 waiting PREREQ_INDEL_FINDER_SAMPLE_INDEX_TGACCA/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/runGrouperBin.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom=SAMPLE_INDEX_TGACCA --binId=0000 INDEL_FINDER_SAMPLE_INDEX_TGACCA 0 synch Indel finder bin-level processing waiting N/A TASKS (INDEL_FINDER_SAMPLE_INDEX_TGACCA/0000[0],) INDEL_FINDER 0 synch Indel finder chrom-level processing waiting N/A TASKS (INDEL_FINDER_SAMPLE_INDEX_CAGATC[0],INDEL_FINDER_CTE2_550bp[0],INDEL_FINDER_CTE2_450bp[0],INDEL_FINDER_CTE2_250bp[0],INDEL_FINDER_CTE1_423bp[0],INDEL_FINDER_CTE2_750bp[0],INDEL_FINDER_SAMPLE_INDEX_ACAGTG[0],INDEL_FINDER_CTA_450bp[0],INDEL_FINDER_CTL_550bp[0],INDEL_FINDER_CTE1_523bp[0],INDEL_FINDER_phi[0],INDEL_FINDER_CTE2_150bp[0],INDEL_FINDER_CTL_650bp[0],INDEL_FINDER_CTA_150bp[0],INDEL_FINDER_CTA_750bp[0],INDEL_FINDER_CTE1_723bp[0],INDEL_FINDER_SAMPLE_INDEX_GCCAAT[0],INDEL_FINDER_CTE1_123bp[0],INDEL_FINDER_CTL_150bp[0],INDEL_FINDER_CTE1_623bp[0],INDEL_FINDER_CTE1_223bp[0],INDEL_FINDER_CONTROL_INDEX[0],INDEL_FINDER_CTE1_323bp[0],INDEL_FINDER_CTE2_650bp[0],INDEL_FINDER_SAMPLE_INDEX_GATCAG[0],INDEL_FINDER_CTL_850bp[0],INDEL_FINDER_CTL_450bp[0],INDEL_FINDER_SAMPLE_INDEX_TTAGGC[0],INDEL_FINDER_SAMPLE_INDEX_ATCACG[0],INDEL_FINDER_SAMPLE_INDEX_TAGCTT[0],INDEL_FINDER_CTA_650bp[0],INDEL_FINDER_CTA_850bp[0],INDEL_FINDER_SAMPLE_INDEX_CGATGT[0],INDEL_FINDER_SAMPLE_INDEX_ACTTGA[0],INDEL_FINDER_CTA_250bp[0],INDEL_FINDER_CTA_350bp[0],INDEL_FINDER_CTA_550bp[0],INDEL_FINDER_SAMPLE_INDEX_CTTGTA[0],INDEL_FINDER_CTE1_823bp[0],INDEL_FINDER_TAGSET1[0],INDEL_FINDER_CTE2_350bp[0],INDEL_FINDER_CTL_750bp[0],INDEL_FINDER_CTL_350bp[0],INDEL_FINDER_CTL_250bp[0],INDEL_FINDER_CTE2_850bp[0],INDEL_FINDER_SAMPLE_INDEX_GGCTAC[0],INDEL_FINDER_SAMPLE_INDEX_TGACCA[0],) PREREQ_VARIANTS_SAMPLE_INDEX_CAGATC/0000 0 synch Variants prereq for SAMPLE_INDEX_CAGATC/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_CAGATC_DONE[0],INDEL_FINDER_SAMPLE_INDEX_CAGATC/0000[0],) VARIANTS_SAMPLE_INDEX_CAGATC/0000 0 task Computing small variants for SAMPLE_INDEX_CAGATC 0000 waiting PREREQ_VARIANTS_SAMPLE_INDEX_CAGATC/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_CAGATC' --binId=0000 VARIANTS_SAMPLE_INDEX_CAGATC 0 synch Small variant caller bin-level processing for chrom SAMPLE_INDEX_CAGATC waiting N/A TASKS (VARIANTS_SAMPLE_INDEX_CAGATC/0000[0],) VARIANTS_FILTER_SAMPLE_INDEX_CAGATC 0 task Aggregating small variant calls for SAMPLE_INDEX_CAGATC waiting VARIANTS_SAMPLE_INDEX_CAGATC /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_CAGATC' PREREQ_VARIANTS_CTE2_550bp/0000 0 synch Variants prereq for CTE2_550bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE2_550bp_DONE[0],INDEL_FINDER_CTE2_550bp/0000[0],) VARIANTS_CTE2_550bp/0000 0 task Computing small variants for CTE2_550bp 0000 waiting PREREQ_VARIANTS_CTE2_550bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_550bp' --binId=0000 VARIANTS_CTE2_550bp 0 synch Small variant caller bin-level processing for chrom CTE2_550bp waiting N/A TASKS (VARIANTS_CTE2_550bp/0000[0],) VARIANTS_FILTER_CTE2_550bp 0 task Aggregating small variant calls for CTE2_550bp waiting VARIANTS_CTE2_550bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_550bp' PREREQ_VARIANTS_CTE2_450bp/0000 0 synch Variants prereq for CTE2_450bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE2_450bp_DONE[0],INDEL_FINDER_CTE2_450bp/0000[0],) VARIANTS_CTE2_450bp/0000 0 task Computing small variants for CTE2_450bp 0000 waiting PREREQ_VARIANTS_CTE2_450bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_450bp' --binId=0000 VARIANTS_CTE2_450bp 0 synch Small variant caller bin-level processing for chrom CTE2_450bp waiting N/A TASKS (VARIANTS_CTE2_450bp/0000[0],) VARIANTS_FILTER_CTE2_450bp 0 task Aggregating small variant calls for CTE2_450bp waiting VARIANTS_CTE2_450bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_450bp' PREREQ_VARIANTS_CTE2_250bp/0000 0 synch Variants prereq for CTE2_250bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE2_250bp_DONE[0],INDEL_FINDER_CTE2_250bp/0000[0],) VARIANTS_CTE2_250bp/0000 0 task Computing small variants for CTE2_250bp 0000 waiting PREREQ_VARIANTS_CTE2_250bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_250bp' --binId=0000 VARIANTS_CTE2_250bp 0 synch Small variant caller bin-level processing for chrom CTE2_250bp waiting N/A TASKS (VARIANTS_CTE2_250bp/0000[0],) VARIANTS_FILTER_CTE2_250bp 0 task Aggregating small variant calls for CTE2_250bp waiting VARIANTS_CTE2_250bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_250bp' PREREQ_VARIANTS_CTE1_423bp/0000 0 synch Variants prereq for CTE1_423bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE1_423bp_DONE[0],INDEL_FINDER_CTE1_423bp/0000[0],) VARIANTS_CTE1_423bp/0000 0 task Computing small variants for CTE1_423bp 0000 waiting PREREQ_VARIANTS_CTE1_423bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_423bp' --binId=0000 VARIANTS_CTE1_423bp 0 synch Small variant caller bin-level processing for chrom CTE1_423bp waiting N/A TASKS (VARIANTS_CTE1_423bp/0000[0],) VARIANTS_FILTER_CTE1_423bp 0 task Aggregating small variant calls for CTE1_423bp waiting VARIANTS_CTE1_423bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_423bp' PREREQ_VARIANTS_CTE2_750bp/0000 0 synch Variants prereq for CTE2_750bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE2_750bp_DONE[0],INDEL_FINDER_CTE2_750bp/0000[0],) VARIANTS_CTE2_750bp/0000 0 task Computing small variants for CTE2_750bp 0000 waiting PREREQ_VARIANTS_CTE2_750bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_750bp' --binId=0000 VARIANTS_CTE2_750bp 0 synch Small variant caller bin-level processing for chrom CTE2_750bp waiting N/A TASKS (VARIANTS_CTE2_750bp/0000[0],) VARIANTS_FILTER_CTE2_750bp 0 task Aggregating small variant calls for CTE2_750bp waiting VARIANTS_CTE2_750bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_750bp' PREREQ_VARIANTS_SAMPLE_INDEX_ACAGTG/0000 0 synch Variants prereq for SAMPLE_INDEX_ACAGTG/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_ACAGTG_DONE[0],INDEL_FINDER_SAMPLE_INDEX_ACAGTG/0000[0],) VARIANTS_SAMPLE_INDEX_ACAGTG/0000 0 task Computing small variants for SAMPLE_INDEX_ACAGTG 0000 waiting PREREQ_VARIANTS_SAMPLE_INDEX_ACAGTG/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_ACAGTG' --binId=0000 VARIANTS_SAMPLE_INDEX_ACAGTG 0 synch Small variant caller bin-level processing for chrom SAMPLE_INDEX_ACAGTG waiting N/A TASKS (VARIANTS_SAMPLE_INDEX_ACAGTG/0000[0],) VARIANTS_FILTER_SAMPLE_INDEX_ACAGTG 0 task Aggregating small variant calls for SAMPLE_INDEX_ACAGTG waiting VARIANTS_SAMPLE_INDEX_ACAGTG /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_ACAGTG' PREREQ_VARIANTS_CTA_450bp/0000 0 synch Variants prereq for CTA_450bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTA_450bp_DONE[0],INDEL_FINDER_CTA_450bp/0000[0],) VARIANTS_CTA_450bp/0000 0 task Computing small variants for CTA_450bp 0000 waiting PREREQ_VARIANTS_CTA_450bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_450bp' --binId=0000 VARIANTS_CTA_450bp 0 synch Small variant caller bin-level processing for chrom CTA_450bp waiting N/A TASKS (VARIANTS_CTA_450bp/0000[0],) VARIANTS_FILTER_CTA_450bp 0 task Aggregating small variant calls for CTA_450bp waiting VARIANTS_CTA_450bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_450bp' PREREQ_VARIANTS_CTL_550bp/0000 0 synch Variants prereq for CTL_550bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTL_550bp_DONE[0],INDEL_FINDER_CTL_550bp/0000[0],) VARIANTS_CTL_550bp/0000 0 task Computing small variants for CTL_550bp 0000 waiting PREREQ_VARIANTS_CTL_550bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_550bp' --binId=0000 VARIANTS_CTL_550bp 0 synch Small variant caller bin-level processing for chrom CTL_550bp waiting N/A TASKS (VARIANTS_CTL_550bp/0000[0],) VARIANTS_FILTER_CTL_550bp 0 task Aggregating small variant calls for CTL_550bp waiting VARIANTS_CTL_550bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_550bp' PREREQ_VARIANTS_CTE1_523bp/0000 0 synch Variants prereq for CTE1_523bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE1_523bp_DONE[0],INDEL_FINDER_CTE1_523bp/0000[0],) VARIANTS_CTE1_523bp/0000 0 task Computing small variants for CTE1_523bp 0000 waiting PREREQ_VARIANTS_CTE1_523bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_523bp' --binId=0000 VARIANTS_CTE1_523bp 0 synch Small variant caller bin-level processing for chrom CTE1_523bp waiting N/A TASKS (VARIANTS_CTE1_523bp/0000[0],) VARIANTS_FILTER_CTE1_523bp 0 task Aggregating small variant calls for CTE1_523bp waiting VARIANTS_CTE1_523bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_523bp' PREREQ_VARIANTS_phi/0000 0 synch Variants prereq for phi/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_phi_DONE[0],INDEL_FINDER_phi/0000[0],) VARIANTS_phi/0000 0 task Computing small variants for phi 0000 waiting PREREQ_VARIANTS_phi/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='phi' --binId=0000 VARIANTS_phi 0 synch Small variant caller bin-level processing for chrom phi waiting N/A TASKS (VARIANTS_phi/0000[0],) VARIANTS_FILTER_phi 0 task Aggregating small variant calls for phi waiting VARIANTS_phi /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='phi' PREREQ_VARIANTS_CTE2_150bp/0000 0 synch Variants prereq for CTE2_150bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE2_150bp_DONE[0],INDEL_FINDER_CTE2_150bp/0000[0],) VARIANTS_CTE2_150bp/0000 0 task Computing small variants for CTE2_150bp 0000 waiting PREREQ_VARIANTS_CTE2_150bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_150bp' --binId=0000 VARIANTS_CTE2_150bp 0 synch Small variant caller bin-level processing for chrom CTE2_150bp waiting N/A TASKS (VARIANTS_CTE2_150bp/0000[0],) VARIANTS_FILTER_CTE2_150bp 0 task Aggregating small variant calls for CTE2_150bp waiting VARIANTS_CTE2_150bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_150bp' PREREQ_VARIANTS_CTL_650bp/0000 0 synch Variants prereq for CTL_650bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTL_650bp_DONE[0],INDEL_FINDER_CTL_650bp/0000[0],) VARIANTS_CTL_650bp/0000 0 task Computing small variants for CTL_650bp 0000 waiting PREREQ_VARIANTS_CTL_650bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_650bp' --binId=0000 VARIANTS_CTL_650bp 0 synch Small variant caller bin-level processing for chrom CTL_650bp waiting N/A TASKS (VARIANTS_CTL_650bp/0000[0],) VARIANTS_FILTER_CTL_650bp 0 task Aggregating small variant calls for CTL_650bp waiting VARIANTS_CTL_650bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_650bp' PREREQ_VARIANTS_CTA_150bp/0000 0 synch Variants prereq for CTA_150bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTA_150bp_DONE[0],INDEL_FINDER_CTA_150bp/0000[0],) VARIANTS_CTA_150bp/0000 0 task Computing small variants for CTA_150bp 0000 waiting PREREQ_VARIANTS_CTA_150bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_150bp' --binId=0000 VARIANTS_CTA_150bp 0 synch Small variant caller bin-level processing for chrom CTA_150bp waiting N/A TASKS (VARIANTS_CTA_150bp/0000[0],) VARIANTS_FILTER_CTA_150bp 0 task Aggregating small variant calls for CTA_150bp waiting VARIANTS_CTA_150bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_150bp' PREREQ_VARIANTS_CTA_750bp/0000 0 synch Variants prereq for CTA_750bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTA_750bp_DONE[0],INDEL_FINDER_CTA_750bp/0000[0],) VARIANTS_CTA_750bp/0000 0 task Computing small variants for CTA_750bp 0000 waiting PREREQ_VARIANTS_CTA_750bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_750bp' --binId=0000 VARIANTS_CTA_750bp 0 synch Small variant caller bin-level processing for chrom CTA_750bp waiting N/A TASKS (VARIANTS_CTA_750bp/0000[0],) VARIANTS_FILTER_CTA_750bp 0 task Aggregating small variant calls for CTA_750bp waiting VARIANTS_CTA_750bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_750bp' PREREQ_VARIANTS_CTE1_723bp/0000 0 synch Variants prereq for CTE1_723bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE1_723bp_DONE[0],INDEL_FINDER_CTE1_723bp/0000[0],) VARIANTS_CTE1_723bp/0000 0 task Computing small variants for CTE1_723bp 0000 waiting PREREQ_VARIANTS_CTE1_723bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_723bp' --binId=0000 VARIANTS_CTE1_723bp 0 synch Small variant caller bin-level processing for chrom CTE1_723bp waiting N/A TASKS (VARIANTS_CTE1_723bp/0000[0],) VARIANTS_FILTER_CTE1_723bp 0 task Aggregating small variant calls for CTE1_723bp waiting VARIANTS_CTE1_723bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_723bp' PREREQ_VARIANTS_SAMPLE_INDEX_GCCAAT/0000 0 synch Variants prereq for SAMPLE_INDEX_GCCAAT/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_GCCAAT_DONE[0],INDEL_FINDER_SAMPLE_INDEX_GCCAAT/0000[0],) VARIANTS_SAMPLE_INDEX_GCCAAT/0000 0 task Computing small variants for SAMPLE_INDEX_GCCAAT 0000 waiting PREREQ_VARIANTS_SAMPLE_INDEX_GCCAAT/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_GCCAAT' --binId=0000 VARIANTS_SAMPLE_INDEX_GCCAAT 0 synch Small variant caller bin-level processing for chrom SAMPLE_INDEX_GCCAAT waiting N/A TASKS (VARIANTS_SAMPLE_INDEX_GCCAAT/0000[0],) VARIANTS_FILTER_SAMPLE_INDEX_GCCAAT 0 task Aggregating small variant calls for SAMPLE_INDEX_GCCAAT waiting VARIANTS_SAMPLE_INDEX_GCCAAT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_GCCAAT' PREREQ_VARIANTS_CTE1_123bp/0000 0 synch Variants prereq for CTE1_123bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE1_123bp_DONE[0],INDEL_FINDER_CTE1_123bp/0000[0],) VARIANTS_CTE1_123bp/0000 0 task Computing small variants for CTE1_123bp 0000 waiting PREREQ_VARIANTS_CTE1_123bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_123bp' --binId=0000 VARIANTS_CTE1_123bp 0 synch Small variant caller bin-level processing for chrom CTE1_123bp waiting N/A TASKS (VARIANTS_CTE1_123bp/0000[0],) VARIANTS_FILTER_CTE1_123bp 0 task Aggregating small variant calls for CTE1_123bp waiting VARIANTS_CTE1_123bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_123bp' PREREQ_VARIANTS_CTL_150bp/0000 0 synch Variants prereq for CTL_150bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTL_150bp_DONE[0],INDEL_FINDER_CTL_150bp/0000[0],) VARIANTS_CTL_150bp/0000 0 task Computing small variants for CTL_150bp 0000 waiting PREREQ_VARIANTS_CTL_150bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_150bp' --binId=0000 VARIANTS_CTL_150bp 0 synch Small variant caller bin-level processing for chrom CTL_150bp waiting N/A TASKS (VARIANTS_CTL_150bp/0000[0],) VARIANTS_FILTER_CTL_150bp 0 task Aggregating small variant calls for CTL_150bp waiting VARIANTS_CTL_150bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_150bp' PREREQ_VARIANTS_CTE1_623bp/0000 0 synch Variants prereq for CTE1_623bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE1_623bp_DONE[0],INDEL_FINDER_CTE1_623bp/0000[0],) VARIANTS_CTE1_623bp/0000 0 task Computing small variants for CTE1_623bp 0000 waiting PREREQ_VARIANTS_CTE1_623bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_623bp' --binId=0000 VARIANTS_CTE1_623bp 0 synch Small variant caller bin-level processing for chrom CTE1_623bp waiting N/A TASKS (VARIANTS_CTE1_623bp/0000[0],) VARIANTS_FILTER_CTE1_623bp 0 task Aggregating small variant calls for CTE1_623bp waiting VARIANTS_CTE1_623bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_623bp' PREREQ_VARIANTS_CTE1_223bp/0000 0 synch Variants prereq for CTE1_223bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE1_223bp_DONE[0],INDEL_FINDER_CTE1_223bp/0000[0],) VARIANTS_CTE1_223bp/0000 0 task Computing small variants for CTE1_223bp 0000 waiting PREREQ_VARIANTS_CTE1_223bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_223bp' --binId=0000 VARIANTS_CTE1_223bp 0 synch Small variant caller bin-level processing for chrom CTE1_223bp waiting N/A TASKS (VARIANTS_CTE1_223bp/0000[0],) VARIANTS_FILTER_CTE1_223bp 0 task Aggregating small variant calls for CTE1_223bp waiting VARIANTS_CTE1_223bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_223bp' PREREQ_VARIANTS_CONTROL_INDEX/0000 0 synch Variants prereq for CONTROL_INDEX/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CONTROL_INDEX_DONE[0],INDEL_FINDER_CONTROL_INDEX/0000[0],) VARIANTS_CONTROL_INDEX/0000 0 task Computing small variants for CONTROL_INDEX 0000 waiting PREREQ_VARIANTS_CONTROL_INDEX/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CONTROL_INDEX' --binId=0000 VARIANTS_CONTROL_INDEX 0 synch Small variant caller bin-level processing for chrom CONTROL_INDEX waiting N/A TASKS (VARIANTS_CONTROL_INDEX/0000[0],) VARIANTS_FILTER_CONTROL_INDEX 0 task Aggregating small variant calls for CONTROL_INDEX waiting VARIANTS_CONTROL_INDEX /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CONTROL_INDEX' PREREQ_VARIANTS_CTE1_323bp/0000 0 synch Variants prereq for CTE1_323bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE1_323bp_DONE[0],INDEL_FINDER_CTE1_323bp/0000[0],) VARIANTS_CTE1_323bp/0000 0 task Computing small variants for CTE1_323bp 0000 waiting PREREQ_VARIANTS_CTE1_323bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_323bp' --binId=0000 VARIANTS_CTE1_323bp 0 synch Small variant caller bin-level processing for chrom CTE1_323bp waiting N/A TASKS (VARIANTS_CTE1_323bp/0000[0],) VARIANTS_FILTER_CTE1_323bp 0 task Aggregating small variant calls for CTE1_323bp waiting VARIANTS_CTE1_323bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_323bp' PREREQ_VARIANTS_CTE2_650bp/0000 0 synch Variants prereq for CTE2_650bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE2_650bp_DONE[0],INDEL_FINDER_CTE2_650bp/0000[0],) VARIANTS_CTE2_650bp/0000 0 task Computing small variants for CTE2_650bp 0000 waiting PREREQ_VARIANTS_CTE2_650bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_650bp' --binId=0000 VARIANTS_CTE2_650bp 0 synch Small variant caller bin-level processing for chrom CTE2_650bp waiting N/A TASKS (VARIANTS_CTE2_650bp/0000[0],) VARIANTS_FILTER_CTE2_650bp 0 task Aggregating small variant calls for CTE2_650bp waiting VARIANTS_CTE2_650bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_650bp' PREREQ_VARIANTS_SAMPLE_INDEX_GATCAG/0000 0 synch Variants prereq for SAMPLE_INDEX_GATCAG/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_GATCAG_DONE[0],INDEL_FINDER_SAMPLE_INDEX_GATCAG/0000[0],) VARIANTS_SAMPLE_INDEX_GATCAG/0000 0 task Computing small variants for SAMPLE_INDEX_GATCAG 0000 waiting PREREQ_VARIANTS_SAMPLE_INDEX_GATCAG/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_GATCAG' --binId=0000 VARIANTS_SAMPLE_INDEX_GATCAG 0 synch Small variant caller bin-level processing for chrom SAMPLE_INDEX_GATCAG waiting N/A TASKS (VARIANTS_SAMPLE_INDEX_GATCAG/0000[0],) VARIANTS_FILTER_SAMPLE_INDEX_GATCAG 0 task Aggregating small variant calls for SAMPLE_INDEX_GATCAG waiting VARIANTS_SAMPLE_INDEX_GATCAG /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_GATCAG' PREREQ_VARIANTS_CTL_850bp/0000 0 synch Variants prereq for CTL_850bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTL_850bp_DONE[0],INDEL_FINDER_CTL_850bp/0000[0],) VARIANTS_CTL_850bp/0000 0 task Computing small variants for CTL_850bp 0000 waiting PREREQ_VARIANTS_CTL_850bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_850bp' --binId=0000 VARIANTS_CTL_850bp 0 synch Small variant caller bin-level processing for chrom CTL_850bp waiting N/A TASKS (VARIANTS_CTL_850bp/0000[0],) VARIANTS_FILTER_CTL_850bp 0 task Aggregating small variant calls for CTL_850bp waiting VARIANTS_CTL_850bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_850bp' PREREQ_VARIANTS_CTL_450bp/0000 0 synch Variants prereq for CTL_450bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTL_450bp_DONE[0],INDEL_FINDER_CTL_450bp/0000[0],) VARIANTS_CTL_450bp/0000 0 task Computing small variants for CTL_450bp 0000 waiting PREREQ_VARIANTS_CTL_450bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_450bp' --binId=0000 VARIANTS_CTL_450bp 0 synch Small variant caller bin-level processing for chrom CTL_450bp waiting N/A TASKS (VARIANTS_CTL_450bp/0000[0],) VARIANTS_FILTER_CTL_450bp 0 task Aggregating small variant calls for CTL_450bp waiting VARIANTS_CTL_450bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_450bp' PREREQ_VARIANTS_SAMPLE_INDEX_TTAGGC/0000 0 synch Variants prereq for SAMPLE_INDEX_TTAGGC/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_TTAGGC_DONE[0],INDEL_FINDER_SAMPLE_INDEX_TTAGGC/0000[0],) VARIANTS_SAMPLE_INDEX_TTAGGC/0000 0 task Computing small variants for SAMPLE_INDEX_TTAGGC 0000 waiting PREREQ_VARIANTS_SAMPLE_INDEX_TTAGGC/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_TTAGGC' --binId=0000 VARIANTS_SAMPLE_INDEX_TTAGGC 0 synch Small variant caller bin-level processing for chrom SAMPLE_INDEX_TTAGGC waiting N/A TASKS (VARIANTS_SAMPLE_INDEX_TTAGGC/0000[0],) VARIANTS_FILTER_SAMPLE_INDEX_TTAGGC 0 task Aggregating small variant calls for SAMPLE_INDEX_TTAGGC waiting VARIANTS_SAMPLE_INDEX_TTAGGC /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_TTAGGC' PREREQ_VARIANTS_SAMPLE_INDEX_ATCACG/0000 0 synch Variants prereq for SAMPLE_INDEX_ATCACG/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_ATCACG_DONE[0],INDEL_FINDER_SAMPLE_INDEX_ATCACG/0000[0],) VARIANTS_SAMPLE_INDEX_ATCACG/0000 0 task Computing small variants for SAMPLE_INDEX_ATCACG 0000 waiting PREREQ_VARIANTS_SAMPLE_INDEX_ATCACG/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_ATCACG' --binId=0000 VARIANTS_SAMPLE_INDEX_ATCACG 0 synch Small variant caller bin-level processing for chrom SAMPLE_INDEX_ATCACG waiting N/A TASKS (VARIANTS_SAMPLE_INDEX_ATCACG/0000[0],) VARIANTS_FILTER_SAMPLE_INDEX_ATCACG 0 task Aggregating small variant calls for SAMPLE_INDEX_ATCACG waiting VARIANTS_SAMPLE_INDEX_ATCACG /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_ATCACG' PREREQ_VARIANTS_SAMPLE_INDEX_TAGCTT/0000 0 synch Variants prereq for SAMPLE_INDEX_TAGCTT/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_TAGCTT_DONE[0],INDEL_FINDER_SAMPLE_INDEX_TAGCTT/0000[0],) VARIANTS_SAMPLE_INDEX_TAGCTT/0000 0 task Computing small variants for SAMPLE_INDEX_TAGCTT 0000 waiting PREREQ_VARIANTS_SAMPLE_INDEX_TAGCTT/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_TAGCTT' --binId=0000 VARIANTS_SAMPLE_INDEX_TAGCTT 0 synch Small variant caller bin-level processing for chrom SAMPLE_INDEX_TAGCTT waiting N/A TASKS (VARIANTS_SAMPLE_INDEX_TAGCTT/0000[0],) VARIANTS_FILTER_SAMPLE_INDEX_TAGCTT 0 task Aggregating small variant calls for SAMPLE_INDEX_TAGCTT waiting VARIANTS_SAMPLE_INDEX_TAGCTT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_TAGCTT' PREREQ_VARIANTS_CTA_650bp/0000 0 synch Variants prereq for CTA_650bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTA_650bp_DONE[0],INDEL_FINDER_CTA_650bp/0000[0],) VARIANTS_CTA_650bp/0000 0 task Computing small variants for CTA_650bp 0000 waiting PREREQ_VARIANTS_CTA_650bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_650bp' --binId=0000 VARIANTS_CTA_650bp 0 synch Small variant caller bin-level processing for chrom CTA_650bp waiting N/A TASKS (VARIANTS_CTA_650bp/0000[0],) VARIANTS_FILTER_CTA_650bp 0 task Aggregating small variant calls for CTA_650bp waiting VARIANTS_CTA_650bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_650bp' PREREQ_VARIANTS_CTA_850bp/0000 0 synch Variants prereq for CTA_850bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTA_850bp_DONE[0],INDEL_FINDER_CTA_850bp/0000[0],) VARIANTS_CTA_850bp/0000 0 task Computing small variants for CTA_850bp 0000 waiting PREREQ_VARIANTS_CTA_850bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_850bp' --binId=0000 VARIANTS_CTA_850bp 0 synch Small variant caller bin-level processing for chrom CTA_850bp waiting N/A TASKS (VARIANTS_CTA_850bp/0000[0],) VARIANTS_FILTER_CTA_850bp 0 task Aggregating small variant calls for CTA_850bp waiting VARIANTS_CTA_850bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_850bp' PREREQ_VARIANTS_SAMPLE_INDEX_CGATGT/0000 0 synch Variants prereq for SAMPLE_INDEX_CGATGT/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_CGATGT_DONE[0],INDEL_FINDER_SAMPLE_INDEX_CGATGT/0000[0],) VARIANTS_SAMPLE_INDEX_CGATGT/0000 0 task Computing small variants for SAMPLE_INDEX_CGATGT 0000 waiting PREREQ_VARIANTS_SAMPLE_INDEX_CGATGT/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_CGATGT' --binId=0000 VARIANTS_SAMPLE_INDEX_CGATGT 0 synch Small variant caller bin-level processing for chrom SAMPLE_INDEX_CGATGT waiting N/A TASKS (VARIANTS_SAMPLE_INDEX_CGATGT/0000[0],) VARIANTS_FILTER_SAMPLE_INDEX_CGATGT 0 task Aggregating small variant calls for SAMPLE_INDEX_CGATGT waiting VARIANTS_SAMPLE_INDEX_CGATGT /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_CGATGT' PREREQ_VARIANTS_SAMPLE_INDEX_ACTTGA/0000 0 synch Variants prereq for SAMPLE_INDEX_ACTTGA/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_ACTTGA_DONE[0],INDEL_FINDER_SAMPLE_INDEX_ACTTGA/0000[0],) VARIANTS_SAMPLE_INDEX_ACTTGA/0000 0 task Computing small variants for SAMPLE_INDEX_ACTTGA 0000 waiting PREREQ_VARIANTS_SAMPLE_INDEX_ACTTGA/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_ACTTGA' --binId=0000 VARIANTS_SAMPLE_INDEX_ACTTGA 0 synch Small variant caller bin-level processing for chrom SAMPLE_INDEX_ACTTGA waiting N/A TASKS (VARIANTS_SAMPLE_INDEX_ACTTGA/0000[0],) VARIANTS_FILTER_SAMPLE_INDEX_ACTTGA 0 task Aggregating small variant calls for SAMPLE_INDEX_ACTTGA waiting VARIANTS_SAMPLE_INDEX_ACTTGA /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_ACTTGA' PREREQ_VARIANTS_CTA_250bp/0000 0 synch Variants prereq for CTA_250bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTA_250bp_DONE[0],INDEL_FINDER_CTA_250bp/0000[0],) VARIANTS_CTA_250bp/0000 0 task Computing small variants for CTA_250bp 0000 waiting PREREQ_VARIANTS_CTA_250bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_250bp' --binId=0000 VARIANTS_CTA_250bp 0 synch Small variant caller bin-level processing for chrom CTA_250bp waiting N/A TASKS (VARIANTS_CTA_250bp/0000[0],) VARIANTS_FILTER_CTA_250bp 0 task Aggregating small variant calls for CTA_250bp waiting VARIANTS_CTA_250bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_250bp' PREREQ_VARIANTS_CTA_350bp/0000 0 synch Variants prereq for CTA_350bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTA_350bp_DONE[0],INDEL_FINDER_CTA_350bp/0000[0],) VARIANTS_CTA_350bp/0000 0 task Computing small variants for CTA_350bp 0000 waiting PREREQ_VARIANTS_CTA_350bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_350bp' --binId=0000 VARIANTS_CTA_350bp 0 synch Small variant caller bin-level processing for chrom CTA_350bp waiting N/A TASKS (VARIANTS_CTA_350bp/0000[0],) VARIANTS_FILTER_CTA_350bp 0 task Aggregating small variant calls for CTA_350bp waiting VARIANTS_CTA_350bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_350bp' PREREQ_VARIANTS_CTA_550bp/0000 0 synch Variants prereq for CTA_550bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTA_550bp_DONE[0],INDEL_FINDER_CTA_550bp/0000[0],) VARIANTS_CTA_550bp/0000 0 task Computing small variants for CTA_550bp 0000 waiting PREREQ_VARIANTS_CTA_550bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_550bp' --binId=0000 VARIANTS_CTA_550bp 0 synch Small variant caller bin-level processing for chrom CTA_550bp waiting N/A TASKS (VARIANTS_CTA_550bp/0000[0],) VARIANTS_FILTER_CTA_550bp 0 task Aggregating small variant calls for CTA_550bp waiting VARIANTS_CTA_550bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTA_550bp' PREREQ_VARIANTS_SAMPLE_INDEX_CTTGTA/0000 0 synch Variants prereq for SAMPLE_INDEX_CTTGTA/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_CTTGTA_DONE[0],INDEL_FINDER_SAMPLE_INDEX_CTTGTA/0000[0],) VARIANTS_SAMPLE_INDEX_CTTGTA/0000 0 task Computing small variants for SAMPLE_INDEX_CTTGTA 0000 waiting PREREQ_VARIANTS_SAMPLE_INDEX_CTTGTA/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_CTTGTA' --binId=0000 VARIANTS_SAMPLE_INDEX_CTTGTA 0 synch Small variant caller bin-level processing for chrom SAMPLE_INDEX_CTTGTA waiting N/A TASKS (VARIANTS_SAMPLE_INDEX_CTTGTA/0000[0],) VARIANTS_FILTER_SAMPLE_INDEX_CTTGTA 0 task Aggregating small variant calls for SAMPLE_INDEX_CTTGTA waiting VARIANTS_SAMPLE_INDEX_CTTGTA /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_CTTGTA' PREREQ_VARIANTS_CTE1_823bp/0000 0 synch Variants prereq for CTE1_823bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE1_823bp_DONE[0],INDEL_FINDER_CTE1_823bp/0000[0],) VARIANTS_CTE1_823bp/0000 0 task Computing small variants for CTE1_823bp 0000 waiting PREREQ_VARIANTS_CTE1_823bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_823bp' --binId=0000 VARIANTS_CTE1_823bp 0 synch Small variant caller bin-level processing for chrom CTE1_823bp waiting N/A TASKS (VARIANTS_CTE1_823bp/0000[0],) VARIANTS_FILTER_CTE1_823bp 0 task Aggregating small variant calls for CTE1_823bp waiting VARIANTS_CTE1_823bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE1_823bp' PREREQ_VARIANTS_TAGSET1/0000 0 synch Variants prereq for TAGSET1/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_TAGSET1_DONE[0],INDEL_FINDER_TAGSET1/0000[0],) VARIANTS_TAGSET1/0000 0 task Computing small variants for TAGSET1 0000 waiting PREREQ_VARIANTS_TAGSET1/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='TAGSET1' --binId=0000 VARIANTS_TAGSET1 0 synch Small variant caller bin-level processing for chrom TAGSET1 waiting N/A TASKS (VARIANTS_TAGSET1/0000[0],) VARIANTS_FILTER_TAGSET1 0 task Aggregating small variant calls for TAGSET1 waiting VARIANTS_TAGSET1 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='TAGSET1' PREREQ_VARIANTS_CTE2_350bp/0000 0 synch Variants prereq for CTE2_350bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE2_350bp_DONE[0],INDEL_FINDER_CTE2_350bp/0000[0],) VARIANTS_CTE2_350bp/0000 0 task Computing small variants for CTE2_350bp 0000 waiting PREREQ_VARIANTS_CTE2_350bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_350bp' --binId=0000 VARIANTS_CTE2_350bp 0 synch Small variant caller bin-level processing for chrom CTE2_350bp waiting N/A TASKS (VARIANTS_CTE2_350bp/0000[0],) VARIANTS_FILTER_CTE2_350bp 0 task Aggregating small variant calls for CTE2_350bp waiting VARIANTS_CTE2_350bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_350bp' PREREQ_VARIANTS_CTL_750bp/0000 0 synch Variants prereq for CTL_750bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTL_750bp_DONE[0],INDEL_FINDER_CTL_750bp/0000[0],) VARIANTS_CTL_750bp/0000 0 task Computing small variants for CTL_750bp 0000 waiting PREREQ_VARIANTS_CTL_750bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_750bp' --binId=0000 VARIANTS_CTL_750bp 0 synch Small variant caller bin-level processing for chrom CTL_750bp waiting N/A TASKS (VARIANTS_CTL_750bp/0000[0],) VARIANTS_FILTER_CTL_750bp 0 task Aggregating small variant calls for CTL_750bp waiting VARIANTS_CTL_750bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_750bp' PREREQ_VARIANTS_CTL_350bp/0000 0 synch Variants prereq for CTL_350bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTL_350bp_DONE[0],INDEL_FINDER_CTL_350bp/0000[0],) VARIANTS_CTL_350bp/0000 0 task Computing small variants for CTL_350bp 0000 waiting PREREQ_VARIANTS_CTL_350bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_350bp' --binId=0000 VARIANTS_CTL_350bp 0 synch Small variant caller bin-level processing for chrom CTL_350bp waiting N/A TASKS (VARIANTS_CTL_350bp/0000[0],) VARIANTS_FILTER_CTL_350bp 0 task Aggregating small variant calls for CTL_350bp waiting VARIANTS_CTL_350bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_350bp' PREREQ_VARIANTS_CTL_250bp/0000 0 synch Variants prereq for CTL_250bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTL_250bp_DONE[0],INDEL_FINDER_CTL_250bp/0000[0],) VARIANTS_CTL_250bp/0000 0 task Computing small variants for CTL_250bp 0000 waiting PREREQ_VARIANTS_CTL_250bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_250bp' --binId=0000 VARIANTS_CTL_250bp 0 synch Small variant caller bin-level processing for chrom CTL_250bp waiting N/A TASKS (VARIANTS_CTL_250bp/0000[0],) VARIANTS_FILTER_CTL_250bp 0 task Aggregating small variant calls for CTL_250bp waiting VARIANTS_CTL_250bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTL_250bp' PREREQ_VARIANTS_CTE2_850bp/0000 0 synch Variants prereq for CTE2_850bp/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_CTE2_850bp_DONE[0],INDEL_FINDER_CTE2_850bp/0000[0],) VARIANTS_CTE2_850bp/0000 0 task Computing small variants for CTE2_850bp 0000 waiting PREREQ_VARIANTS_CTE2_850bp/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_850bp' --binId=0000 VARIANTS_CTE2_850bp 0 synch Small variant caller bin-level processing for chrom CTE2_850bp waiting N/A TASKS (VARIANTS_CTE2_850bp/0000[0],) VARIANTS_FILTER_CTE2_850bp 0 task Aggregating small variant calls for CTE2_850bp waiting VARIANTS_CTE2_850bp /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='CTE2_850bp' PREREQ_VARIANTS_SAMPLE_INDEX_GGCTAC/0000 0 synch Variants prereq for SAMPLE_INDEX_GGCTAC/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_GGCTAC_DONE[0],INDEL_FINDER_SAMPLE_INDEX_GGCTAC/0000[0],) VARIANTS_SAMPLE_INDEX_GGCTAC/0000 0 task Computing small variants for SAMPLE_INDEX_GGCTAC 0000 waiting PREREQ_VARIANTS_SAMPLE_INDEX_GGCTAC/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_GGCTAC' --binId=0000 VARIANTS_SAMPLE_INDEX_GGCTAC 0 synch Small variant caller bin-level processing for chrom SAMPLE_INDEX_GGCTAC waiting N/A TASKS (VARIANTS_SAMPLE_INDEX_GGCTAC/0000[0],) VARIANTS_FILTER_SAMPLE_INDEX_GGCTAC 0 task Aggregating small variant calls for SAMPLE_INDEX_GGCTAC waiting VARIANTS_SAMPLE_INDEX_GGCTAC /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_GGCTAC' PREREQ_VARIANTS_SAMPLE_INDEX_TGACCA/0000 0 synch Variants prereq for SAMPLE_INDEX_TGACCA/0000 waiting N/A TASKS (refSeq_DONE[0],SYNCH_MERGE_SAMPLE_INDEX_TGACCA_DONE[0],INDEL_FINDER_SAMPLE_INDEX_TGACCA/0000[0],) VARIANTS_SAMPLE_INDEX_TGACCA/0000 0 task Computing small variants for SAMPLE_INDEX_TGACCA 0000 waiting PREREQ_VARIANTS_SAMPLE_INDEX_TGACCA/0000 /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/callSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_TGACCA' --binId=0000 VARIANTS_SAMPLE_INDEX_TGACCA 0 synch Small variant caller bin-level processing for chrom SAMPLE_INDEX_TGACCA waiting N/A TASKS (VARIANTS_SAMPLE_INDEX_TGACCA/0000[0],) VARIANTS_FILTER_SAMPLE_INDEX_TGACCA 0 task Aggregating small variant calls for SAMPLE_INDEX_TGACCA waiting VARIANTS_SAMPLE_INDEX_TGACCA /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/filterSmallVariants.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --chrom='SAMPLE_INDEX_TGACCA' VARIANTS 0 synch Small variant caller sequence-level processing waiting N/A TASKS (VARIANTS_FILTER_SAMPLE_INDEX_CAGATC[0],VARIANTS_FILTER_CTE2_550bp[0],VARIANTS_FILTER_CTE2_450bp[0],VARIANTS_FILTER_CTE2_250bp[0],VARIANTS_FILTER_CTE1_423bp[0],VARIANTS_FILTER_CTE2_750bp[0],VARIANTS_FILTER_SAMPLE_INDEX_ACAGTG[0],VARIANTS_FILTER_CTA_450bp[0],VARIANTS_FILTER_CTL_550bp[0],VARIANTS_FILTER_CTE1_523bp[0],VARIANTS_FILTER_phi[0],VARIANTS_FILTER_CTE2_150bp[0],VARIANTS_FILTER_CTL_650bp[0],VARIANTS_FILTER_CTA_150bp[0],VARIANTS_FILTER_CTA_750bp[0],VARIANTS_FILTER_CTE1_723bp[0],VARIANTS_FILTER_SAMPLE_INDEX_GCCAAT[0],VARIANTS_FILTER_CTE1_123bp[0],VARIANTS_FILTER_CTL_150bp[0],VARIANTS_FILTER_CTE1_623bp[0],VARIANTS_FILTER_CTE1_223bp[0],VARIANTS_FILTER_CONTROL_INDEX[0],VARIANTS_FILTER_CTE1_323bp[0],VARIANTS_FILTER_CTE2_650bp[0],VARIANTS_FILTER_SAMPLE_INDEX_GATCAG[0],VARIANTS_FILTER_CTL_850bp[0],VARIANTS_FILTER_CTL_450bp[0],VARIANTS_FILTER_SAMPLE_INDEX_TTAGGC[0],VARIANTS_FILTER_SAMPLE_INDEX_ATCACG[0],VARIANTS_FILTER_SAMPLE_INDEX_TAGCTT[0],VARIANTS_FILTER_CTA_650bp[0],VARIANTS_FILTER_CTA_850bp[0],VARIANTS_FILTER_SAMPLE_INDEX_CGATGT[0],VARIANTS_FILTER_SAMPLE_INDEX_ACTTGA[0],VARIANTS_FILTER_CTA_250bp[0],VARIANTS_FILTER_CTA_350bp[0],VARIANTS_FILTER_CTA_550bp[0],VARIANTS_FILTER_SAMPLE_INDEX_CTTGTA[0],VARIANTS_FILTER_CTE1_823bp[0],VARIANTS_FILTER_TAGSET1[0],VARIANTS_FILTER_CTE2_350bp[0],VARIANTS_FILTER_CTL_750bp[0],VARIANTS_FILTER_CTL_350bp[0],VARIANTS_FILTER_CTL_250bp[0],VARIANTS_FILTER_CTE2_850bp[0],VARIANTS_FILTER_SAMPLE_INDEX_GGCTAC[0],VARIANTS_FILTER_SAMPLE_INDEX_TGACCA[0],) VARIANTS_STATS 0 task Small variants stats waiting VARIANTS /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/generateVariantsStats.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 REPORT 1 task Small variants report waiting VARIANTS_STATS /illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2/generateVariantsReports.pl --projectDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 refSeqClean_PREREQ 0 synch Cleanup reference cache prerequisites. waiting N/A TASKS (SYNCH_SORT2[1],SYNCH_MERGE_DONE[0],REPORT[1],INDEL_FINDER[0],SYNCH_EXPORT5[0],) SPLIT_REF_SEQ_CLEANUP 0 task Split reference cleanup waiting refSeqClean_PREREQ /illumina/development/casava/Version_1_8_branch/bin/configureBuild.pl --outDir=/illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 --targets continue --chromNameSource=contigName --refSequences=/illumina/development/casava/Version_1_8_branch/share/CASAVA-1.8.2/examples/Validation/100723_EAS346_0188_FC626BWAAXX/Data/Intensities/BaseCalls --maskRefSeqFiles=controls.fasta && rm -rf /illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4/cachedRefSeq ALL_DONE 0 synch The checkpoint that gets executed after everything is done waiting N/A TASKS (SPLIT_REF_SEQ_CLEANUP[0],) postRunCmd 0 task --postRunCmd script waiting ALL_DONE cd /illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4 && CASAVA_FULL_ETCDIR="/illumina/development/casava/Version_1_8_branch/etc/CASAVA-1.8.2" CASAVA_FULL_DATADIR="/illumina/development/casava/Version_1_8_branch/share/CASAVA-1.8.2" CASAVA_FULL_BINDIR="/illumina/development/casava/Version_1_8_branch/bin" CASAVA_FULL_LIBDIR="/illumina/development/casava/Version_1_8_branch/lib/CASAVA-1.8.2" CASAVA_FULL_LIBEXECDIR="/illumina/development/casava/Version_1_8_branch/libexec/CASAVA-1.8.2" CASAVA_FULL_PERL_LIBDIR="/illumina/development/casava/Version_1_8_branch/lib/CASAVA-1.8.2/perl" touch /illumina/development/casava/Version_1_8_branch/bin/100723_EAS346_0188_FC626BWAAXX.generation/Build/Project_FC626BWAAXX/Sample_lane4/Build.finished