## Makefile.am for EMBOSS
## Process this file with automake to produce Makefile.in in all directories.

ACLOCAL_AMFLAGS = -I m4

AUTOMAKE_OPTIONS = gnits

SUBDIRS = plplot ajax nucleus emboss test doc jemboss

# AJAX_FIXED_ROOT = \"`pwd`/emboss/acd\"

# files with nonstandard names in this directory
EXTRA_DIST = COMPAT LICENSE KNOWN_BUGS ONEWS PROBLEMS FAQ ChangeLog depcomp ltmain.sh

# tar to pick up the other directories
# then remove any CVS subdirectories

dist-hook:
	tar cBf - scripts | ( cd $(distdir); tar xBf - ; find scripts -name CVS | xargs rm -rf )
	tar cBf - test | ( cd $(distdir); tar xBf - ; rm -rf test/CVS test/*/CVS ) 
	tar cBf - emboss/acd | ( cd $(distdir); tar xBf - ; cd emboss/acd; rm -rf CVS ) 
	tar cBf - emboss/data | ( cd $(distdir); tar xBf - ; cd emboss/data; rm -rf CVS */CVS */*/CVS ) 
	tar cBf - plplot/lib | ( cd $(distdir); tar xBf - ; find plplot -name CVS | xargs rm -rf ) 
	tar cBf - doc | ( cd $(distdir); tar xBf - ; find doc -name CVS | xargs rm -rf; ) 
	tar cBf - jemboss | ( cd $(distdir); tar xBf - ; find jemboss -name CVS | xargs rm -rf; find jemboss -name Makefile | xargs rm -rf; find jemboss -name .cvsignore | xargs rm -rf )