application: dbshowdat
[
  documentation: "Show possible database queries that return a given data type"
  groups: "Information"
  gui: "yes"
  batch: "yes"
  cpu: "low"
  relations: "EDAM:0000088 topic Literature and documentation"
  relations: "EDAM:0000516 operation Database information retrieval"
]





section: input 
[
  information: "Input section"
  type: "page"
]

  string: datatype
  [
      parameter: "Y"
      information: "Name of datatype."
      help: "This is the name of a retrievable datatype from the catalogue of public databases in the EMBOSS data file DRCAT.dat.  The names are terms from the 'data' branch of the EDAM ontology, http://edamontology.sourceforge.net/.  If you are unsure of the available retrievable datatypes for a given database, use dbtellquery.  If you have a datatype name but are not sure its valid, use isdbdata."
      knowntype: "string"
      relations: "EDAM:0002253 data Data type name"
  ]

endsection: input





section: required 
[
  information: "Required section"
  type: "page"
]
endsection: required





section: additional
[
  information: "Additional section"
  type: "page"
]
endsection: additional





section: advanced
[
  information: "Advanced section"
  type: "page"
]

  string: database
  [
      parameter: "Y"
      information: "Name of database."
      help: "This is the name of a database from the catalogue of public databases in the EMBOSS data file DRCAT.dat.  If you are unsure of the available databases use dbfind.  If you have a database name but are not sure its valid, use isdbname."
      knowntype: "string"
      relations: "EDAM:0001056 identifier Database name"
  ]

  string: identifier
  [
      parameter: "Y"
      information: "Data identifier."
      help: "This is a data identifier (e.g. a sequence accession number) that is used to specify the data (of type 'datatype') to retrieve.  If you're unsure of the data identifier(s) that are used for a given query (database/datatype) use dbtellquery.  The types of data identifier are listed under the 'Data identifier' branch of the EDAM ontology (http://edamontology.sourceforge.net/).  For example values, see the catalogue of public databases in the EMBOSS data file DRCAT.dat. If you have a data identifier but are unsure of its type, use idtell."
      knowntype: "string"
      relations: "EDAM:0000976 data Data identifier"
  ]

endsection: advanced





section: output 
[
  information: "Output section"
  type: "page"
]

  outfile: outfile 
  [
    additional: "Y"
    default: "stdout"
    knowntype: "dbshowdat output"
    relations: "EDAM:0000957 data Database metadata"
  ]

endsection: output


section: htmlsection [
    information: "Html section"
    type: "frame"
  ]
    boolean: html [
      additional: "Y"
      default: "N"
      information: "Format the output for HTML"
      help: "If you are sending the output to a file, this will format
             it for displaying as a table in a WWW document."
      outputmodifier: "Y"
    relations: "EDAM:0002527 data Parameter or primitive"
    ]

endsection: htmlsection