/* @source newseq application
**
** Type in a short new sequence
**
** @author Copyright (C) Gary Williams (gwilliam@hgmp.mrc.ac.uk)
** @@
**
** This program is free software; you can redistribute it and/or
** modify it under the terms of the GNU General Public License
** as published by the Free Software Foundation; either version 2
** of the License, or (at your option) any later version.
**
** This program is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
** GNU General Public License for more details.
**
** You should have received a copy of the GNU General Public License
** along with this program; if not, write to the Free Software
** Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
******************************************************************************/

#include "emboss.h"




/* @prog newseq ***************************************************************
**
** Type in a short new sequence
**
******************************************************************************/

int main(int argc, char **argv)
{

    AjPSeqout seqout;
    AjPSeq seq  = NULL;
    AjPStr name = NULL;
    AjPStr desc = NULL;
    AjPStr sequence = NULL;
    AjPStr type;

    embInit("newseq", argc, argv);

    seqout   = ajAcdGetSeqout("outseq");
    name     = ajAcdGetString("name");
    desc     = ajAcdGetString("description");
    sequence = ajAcdGetString("sequence");
    type     = ajAcdGetListSingle("type");

    /* initialise the sequence */
    seq = ajSeqNewRes(ajStrGetLen(sequence));

    /* assign some things to the sequence */
    ajSeqAssignNameS(seq, name);
    ajSeqAssignDescS(seq, desc);

    if(!ajStrCmpC(type, "N"))
	ajSeqSetNuc(seq);
    else
	ajSeqSetProt(seq);

    ajSeqAssignSeqS(seq, sequence);

    ajSeqoutWriteSeq(seqout, seq);
    ajSeqoutClose(seqout);

    ajSeqDel(&seq);
    ajSeqoutDel(&seqout);
    ajStrDel(&name);
    ajStrDel(&desc);
    ajStrDel(&type);
    ajStrDel(&sequence);

    embExit();

    return 0;
}