// PathVisio,
// a tool for data visualization and analysis using Biological Pathways
// Copyright 2006-2011 BiGCaT Bioinformatics
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
//
package org.pathvisio.wikipathways.client;

import java.util.Set;

import com.google.gwt.user.client.rpc.RemoteService;
import com.google.gwt.user.client.rpc.RemoteServiceRelativePath;

@RemoteServiceRelativePath("atlasMapper")
public interface AtlasMapperService extends RemoteService {
	public String[] getOrganisms();
	public PathwayInfo[] getPathways();
	public FactorInfo[] getFactors(String pathway);
	public String getImageUrl(String pathway, String factorType, String[] factorValues);
	public PathwayInfo getPathwayInfo(String pathway);
	public GeneInfo[] getGeneInfo(String pathway, String factorType, Set<String> factorValues);
}