// PathVisio, // a tool for data visualization and analysis using Biological Pathways // Copyright 2006-2011 BiGCaT Bioinformatics // // Licensed under the Apache License, Version 2.0 (the "License"); // you may not use this file except in compliance with the License. // You may obtain a copy of the License at // // http://www.apache.org/licenses/LICENSE-2.0 // // Unless required by applicable law or agreed to in writing, software // distributed under the License is distributed on an "AS IS" BASIS, // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. // See the License for the specific language governing permissions and // limitations under the License. // package org.pathvisio.cytoscape.actions; import cytoscape.Cytoscape; import cytoscape.util.CytoscapeAction; import cytoscape.view.CytoscapeDesktop; import java.awt.event.ActionEvent; import javax.swing.JTabbedPane; import org.pathvisio.cytoscape.AttributeDefaultsPanel; import org.pathvisio.cytoscape.AttributeMapperPanel; import org.pathvisio.cytoscape.GpmlPlugin; import org.pathvisio.gui.dialogs.OkCancelDialog; /** * Action to show AttributeMapperPanel, where * mappings between Cytoscape attributes and GPML Properties can be * configured. */ public class AttributeMapperAction extends CytoscapeAction { GpmlPlugin plugin; public AttributeMapperAction(GpmlPlugin plugin) { this.plugin = plugin; } protected void initialize() { super.initialize(); putValue(NAME, "Configure attribute mappings"); } public String getPreferredMenu() { return "Plugins"; } public boolean isInMenuBar() { return true; } public void actionPerformed(ActionEvent e) { OkCancelDialog dialog = new OkCancelDialog( CytoscapeDesktop.getFrames()[0], "GPML attribute mappings", null, true, false ); JTabbedPane tabs = new JTabbedPane(); tabs.addTab("Node attributes", new AttributeMapperPanel( plugin.getGpmlHandler().getAttributeMapper(), Cytoscape.getNodeAttributes() )); tabs.addTab("Edge attributes", new AttributeMapperPanel( plugin.getGpmlHandler().getAttributeMapper(), Cytoscape.getEdgeAttributes() )); tabs.addTab("Default values", new AttributeDefaultsPanel( plugin.getGpmlHandler().getAttributeMapper() )); dialog.setDialogComponent(tabs); dialog.pack(); dialog.setVisible(true); } }