ID CINFUL3_I repbase; DNA; GRAS; 7338 BP. XX AC AF090447; XX DT 02-AUG-2007 (Rel. 12.08, Created) DT 30-AUG-2007 (Rel. 12.08, Last updated, Version 1) XX DE LTR retrotransposon. XX KW Gypsy; LTR Retrotransposon; Transposable Element; CINFUL3_I. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-7338 RA Jurka J. and Obukhanych T.; RT "CINFUL3: Gypsy-type sequence from Zea mays."; RL Repbase Reports 7(8), 663-663 (2007). XX DR EMBL/GenBank/DDBJ; AF090447; Positions 197337 190000. XX CC This sequence is relatively old: LTRs are ~95% identical, and the CC 5' LTR has an extra indel relative to 3' LTR. XX FH Key Location/Qualifiers FT CDS join(1217..1888,1892..2683) FT /product="CINFUL3_I_1p" FT /translation="MQYLATIRSLERQFKGFTLQHVDRAKNEEADALAKAA FT ARGEALPSDVFYHVIGTPAFRSPEGLQITNDSEGHRIVNLIMTEDWRAPIT FT LFLQGYYHPTDINEAKCLKHRSRDFALIEGQLYKKGVSQPMLKCVTETEGV FT QILREVHSGTCGSHAGPRALAAKVIHQGFYWPAMICAANRVTRSCEACQKF FT SPRSGSPSQFTKLIAHTWPLQRWGLDIVGPLPTAGNLKLTFVAVEYFTKWI FT EARTVSTITSKTAQKFFWQNIVCRFGVPSELTADNGKQFDSQDFKDFCFSI FT GTKLAFASVYHPQSNGVVERANGKIFTAIKKMLLDDKKGKWADLLPKAVWA FT LNTTEFRATGFTPFRLLYGSEAMTPQEIKHGSLRTVASAVPDVDEPTSKDL FT IDGDRVFSLQALNKYQAQTKAWRDHTVIPREFSEGDLVLVRTTRTESRGRL FT EQKWEGPFIVKTKASPSAYRLTTPSGEDFEHSWNIDNLRKFFV" XX SQ Sequence 7338 BP; 1816 A; 2389 C; 1756 G; 1377 T; 0 other; tcagaatgcc ggagggactt aagaacgccg ggtccacttt ctctcggctc accaaaacag 60 tgctcgaggg ccaagtcggc agaaacatat ttacgtatgt ggacgacatc gtcgtcgcca 120 gcagaagcaa ggaagaccat ctggctgacc tcaccgaaac atttgcgaac atgcgggacg 180 cacgacttcg cctaaacccc gaaaagtgcg tcttcggcgt tcgctagggg aaaatattgg 240 gctacacggt gtcgcaccat gggatcgaag ccaatccaac caaaattcag gacatcatca 300 acatgacgcc ccacagtcag ccagagacgt ccaacgacta ataggcagat tggacgccct 360 caacagattc atctccaaat ccgcagagcg aagtctccct ttcctcaaaa cactccgcgg 420 cgcaaaagac ttcgcatggg gaccagagca ggcggcggcc ttcgcctctt tgaagcagta 480 tctgtcagaa ttggcgattc ttacaagccc agacccctcg ctaccactgt tgctctacat 540 cgcagcttcg ccgcatgcgg tcagcgcatc actggtctaa gagcggaata gagagggctc 600 gttcaggcaa tgtccagttt attacgtctc cgaagtactc acgacatcaa aatgcaatat 660 gacggaactg gaaaaaatcg cctacgcagt tgttatggct tcgtgcaaat tgcgccatta 720 ttttgaagcg ttcaaggtcc gggtcacctc agatagggga ctcagcgaat tgtttagaaa 780 cccgaaggca tcagtccgga ttgccaaatg ggcagccgaa ctctccggct aacacatcac 840 attcaaaccc aggacagcca tcaagtcaca agtcctggca gacttcgtcg tcgactggac 900 tgggccaata acacagccgg acacgtccgc ggagagggta tggacaatcc attgcgacga 960 cgcatggtgc catgcggggg caggcaccgc tgtagtcatt acgtcaccca caggggtcaa 1020 gcacagatac gcagcacgcc tcagctttgc tttggagtct gacagatgca ctaacaatat 1080 agcagaatac gaagctatca ttctcggcct tcgcaagcta aggccacttg gtgtcaccac 1140 ctgcatcatc agaacagact ccaagatagt cgtcggccaa gtcgagaaag actacacaac 1200 gaaggacccc acacttatgc agtacctcgc gactatccgc agtctcgaaa gacaattcaa 1260 aggttttacc ttacagcatg tggaccgagc caagaatgag gaggccgacg cattagccaa 1320 ggcagccgcc agaggcgagg ccctgccctc cgatgtattc taccatgtca ttggcacgcc 1380 agccttccgt agcccagagg ggctccaaat aaccaatgac agcgagggcc accgcatagt 1440 caacctcatc atgaccgaag actggcgggc accaataacc ctattcctgc aggggtacta 1500 tcatccaacc gatatcaatg aggccaagtg cctcaaacat cgaagccggg actttgcact 1560 aatcgaaggc caactttaca aaaagggggt cagtcaaccc atgcttaaat gtgtcaccga 1620 gaccgaaggc gtccaaattc tgcgcgaagt ccacagcggg acttgcggct ctcacgcagg 1680 gcccagggcc ctagccgcaa aggtgatcca tcaaggtttc tactggcccg ccatgatctg 1740 cgctgcaaat cgggtcacaa ggtcctgcga agcctgccag aaattttctc cacgctcggg 1800 aagcccttcg caattcacaa agctaatcgc ccacacgtgg cctcttcagc gctggggcct 1860 ggacattgtc gggcccctac ccacggccta ggggaacctc aagttgacct tcgtcgccgt 1920 cgagtatttt accaaatgga tcgaggcgag gactgtatcc acgataacat cgaagactgc 1980 ccagaaattc ttctggcaaa acattgtttg ccgcttcgga gtcccgtccg aactcacagc 2040 tgacaatggc aagcaatttg acagccaaga cttcaaggat ttctgcttct ccatcggcac 2100 caagcttgcc ttcgcctcag tgtaccaccc gcaatccaac ggagttgtgg aacgcgccaa 2160 cggtaaaatt ttcacagcca tcaagaaaat gctcctcgac gacaaaaaag gaaagtgggc 2220 agacctgtta cctaaagcgg tctgggcgct gaacacgact gagttcaggg cgactgggtt 2280 cacccctttc cgccttctat atggatcgga ggccatgact ccgcaagaaa taaaacatgg 2340 gtcactgcgg acagtcgcgt cagccgtccc cgacgtagac gaacctactt cgaaggacct 2400 catcgacgga gaccgtgtct tctccctaca ggctctaaac aaataccaag ctcaaacaaa 2460 agcatggcgc gaccacacag tcatcccgag ggaatttagc gaaggagacc tcgtactcgt 2520 ccggacaact cggacagagt cccggggcag gctagagcaa aaatgggagg gccctttcat 2580 tgtcaagacg aaggcgtccc ccagcgcgta caggctcaca acgccatctg gcgaagactt 2640 tgaacattct tggaacattg acaatcttcg caagtttttt gtttgactcc ttagggccag 2700 ctcacccttg taattcgcaa gacagttttt attccggccc gcactctttt cctaccgggg 2760 ggtgaggttt ttaatgaggt ggagccatgt aatatacacg caaaaaatcc cccgcaaaaa 2820 attacaacgt cgaaagaaga ccgcatcgac agtcttcgac attcgacaaa cacgaagtca 2880 ccgcgagggg cagcgctggc taccctcacg tgcgacagtc cgcgcaaaag tcgcctaagg 2940 gcgcagccgg actagcacaa caagtgcgca aaacatgtct tccccaaaag actatccgtg 3000 caaaagtcgc ctaatggtgc agccggacta gcacaaaaag tgcgcaaaac cagtcttccc 3060 caaaatattg tctatgcaaa agtcgcctaa gtgtgcagcc agactagcac aacaagtgcg 3120 caaaatcgaa gtcttctcca aaagactatc cgtgcaaaag tcgcctaagg gtgcagccgg 3180 actagcacaa caagtgcgaa aaatcgaagt cttcctccca agactatccg tgcaaaagtc 3240 gcctgagggt gcagctggac cgacataata aacgtgctag acctagtgca caagtcccct 3300 acgggcacga ccgtatcagc taaggcacac agcctcatca tacaaattat agttacatac 3360 gtacaacgag ggcatcacac cttacaatgg ttcaaccttc gggatgatac ccatctccct 3420 atagttaaac aacattatcc tcagctcctc accctcaaac agacttcgca attccccctc 3480 acctacactc gccccagctg gcaaggacaa caattcccgc ctaccagccc tgtccacacg 3540 aagacgacca ccctccacct cactcactcc gcgcttcgcc accgcccttt gccgcctacg 3600 cccagcgctc ggaccgagaa cctcagcacc catcacacac ggcgaagcct ccgccgcagc 3660 cacatccaat gccgcaaaat aatccaagtc ctcatccgaa gactcttcag tccacaccac 3720 cgaactcaca gaatcatcag actcaaaaaa cttagacaca gaatcacccg aatcattttc 3780 cgcaaccacg gtcgaagccg ccacaaaatt agcactttca gtagcggttg cgtacgcagg 3840 cccaaaaccc tgaacctgcg cagcaaccga ggttcagtaa cacgtagaca aaatttacaa 3900 cccccctaaa cctattcaac tacttagcca cctgcgcggg cgcctccgcg gccgtagggc 3960 cttcgaccac cggctccgcc accacctcat gagcgccttt gactgtcggc acaggggccg 4020 acacagggtc ttcgccgaca gcagcaggca cgggcacgtc cgatgggcgt tcaccagcat 4080 ccgagggcag caccggtctg ccctccgcag cctcgggcgg cgcactgttt agacctccga 4140 ggtctttgac atcctcagca tgcgccatct gcagcaacaa cacactcatt cagcaaaccc 4200 acacgtaccc acattcaatc acacgaaaca acagacaaga cttacatgct ctctcgcccg 4260 atcagaccgc tccttgaccg cctcccggcc atgaggaccc cacatccgat cgaagagggc 4320 ccccgcagaa tccttcacca cagggtcttc gaccttaaaa atttcgcgcc caaagtcttc 4380 atcggaccgg tcgaagccct catagtgatt gcatcccttg cgggacaacg cattcatggc 4440 cccttcgcag gtgacgaggg aggcaaaaga catgaatccc tccacgatgg tcgggagtgc 4500 cagcaattcc tcttgcagcc actcgaggaa gcgaaggctc gcttctcggt cgggcacctc 4560 gaagtcagca gtccgcgcac ccagctcgcg gtatgagtcc acgagctgtt tgcgcgttcg 4620 ctcaacttcc gagcgcgtag aggcctcggc cctctccatg cgggcgtgca gagcgttgaa 4680 ccgcacctcc cattcctcgg cgcgttggct ggcgagactc ccctccgccc gcgccaattt 4740 ggcctccgcc tgcgccgcct gcaccttggc gatggcctgg ttggcctccc tcctttcctc 4800 caccaactgg cgccggaggt ccatcctctc gccctccagg gcggccacct tctccgccag 4860 cctgtggctc ttgctctccg cagccgactt ctcccggacg gcgtccgcgt gctgcgccca 4920 aagtctctcg acttcggcag acacatctgc agtaagggca cccgacgcca cgcggtcggc 4980 gaagtcggcc gcctaacaga cacacatgag accacaatcc ccatgaaagc aggaaacacc 5040 gaagtccagc tcaacttact tgacttagct gctgcgacgc ctccctcagc cggcgggaca 5100 tagtgcccgc ttcgtccttg acggcagtgg ccgccgaaat ctcgccgcca gcgctgaaag 5160 cgccaccctt caccccaagc accgcggttg acgccgtggt tgccaccaca ggtgggacaa 5220 caaccagttg cccctcactc gaccctgcaa cgtatcaccg gtcagaataa aaaaaatgct 5280 taccaacgag atagtcgtcc acgctaatat tcatgccgaa gtcggcaacg cgtttccccg 5340 tcgaaggcag ctcccggacc ttcacagctc cgtccggggc agacttggtt ccaccggcgc 5400 cgaccgcctt cccgctctcc ggcaccttgc tggatccagg cgcggccggc tttgcagcca 5460 gcatcggctg gctaccgccg gggacgatag ccttcgcact ccctcgcgct ctcttcgctt 5520 cacgcctagc gtcggggagc ctgatgaccg cccgacgctt ctgcgcagca tcctggtgat 5580 ccttgttcat cactatcgac acaacaacag caatattccg tctgtaagga aacactctca 5640 agtcacgagc catgcgagat gtaaagaagt cttcgccagc cgcgcggggg ataggaacgt 5700 ttttgggcca tcgacccctg gtaacctcca acatccgcgc cgaagactcc cggagctcgg 5760 gcgaagacat ccttcccccg ggggccacgc atgtccccat caactccata gcaaaactat 5820 cggagacccc cagttctccc accgcagtac ctagcttcct cttcttagtg gctggggcgg 5880 cctccgacgc ggggtcgtct tcagtcacag ccgctggttt tttcccgctg tggtcgacaa 5940 cgtcttcccc gggataaccg ccatacggca aacaattcaa ctcgaagacc ctattcaggc 6000 ggtcgttgga tccacgtata tcccaactcc gctgggcctc cgtcttcggc acgtagcacc 6060 caacaattct caccgcccca tcctccgcct catgcacaac cgcggcagga tcccgccctc 6120 gcacatccaa agcaaaaagc ggacttcgca ccttccgccc gcccagggag ggcatctcgc 6180 gagggcatac tttgcccaac gcccatccat gcgccaaggg ccacacccca taccctatga 6240 attcctcaac tagatcgcgc ccactactcg tgcgggcagc gatccgaagg gccctttcat 6300 tttcatcatc ctccgccact tcaaatggcg ggtatgccac atagtaatga gagcacataa 6360 tggcggcagg gagccctggg tgatcttcga cttcagcctc cgaaacatag aaccagtagt 6420 cccaccagtt gccccactta ttttgggcac aggggaccag ctccaccact tccatcgaag 6480 tcttcccgga cttcgtcgtg aaagtgcatg atccgaattg agcaatctta tgtccatttt 6540 ttctcttctg ccaatgcaga ccgtattgct tggcgaagac ttccaccgaa ggctgaccgc 6600 catacgacgt cgttgcccag acatacttcg ccaacgccac cacggcgttc ggtgtgagct 6660 aatgaacctg gactttgaac ttctgcagaa cctccgacat aaaacgatgc gcaggcaggc 6720 gaaggccggc gatgaaaaat gcctcaaaaa caaccaattc gccctcgagc tcggggacct 6780 cctctggccc cgggactcga ccaaccccgc cgccaaaata caccaactgt tgcatatctt 6840 gcacgcggac caacgacatc cgcgaaacac cgaattccac cgtatcaccc ggtcgtaatt 6900 ccgccgccgc cacagtgccc gagagatctt cggaagacgc cttggccgtc ggcgtggtcg 6960 cagcagacga ggaggaagac ggcatggcta cgtaccgtcg acggcggcgc acagtctgct 7020 tcacgtgggc cagttctccg acgaacagga gcaaggaggg cagacgagca agcgagcagt 7080 ttgacaggga ggctagggtt ttcgcggcgc gcagaaaggt aaatttcaat ccccgccgcc 7140 cccaccccct ttatatacac agggcgcgac gcttcgggaa gccagcaatc caacagtgtg 7200 gcgtcaatca acggtcatgt caaaaacccc cgcggaacca cttcgagcga gggcagcgtc 7260 tccaccatct agcgacacct tcggcaccaa atgacttagt cgaactggtc cctcggaggg 7320 caaatgttgg ggcgaagg 7338 // ID En/Spm1_TD repbase; DNA; GRAS; 13135 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE En/Spm-like DNA transposon. XX KW DNA transposon; transposase; En/Spm superfamily; CACTA; Caspar; KW TREP782; En/Spm1_TD. XX OS Triticum turgidum subsp. durum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum; Triticum turgidum. XX RN [1] RP 1-13135 RA Wicker T., Yahiaoui N., Guyot R., Schlagenhauf E., Liu D.Z., RA Dubcovsky J. and Keller B.; RT "Dynamic genome equilibrium at orthologous LMW glutenin loci of RT the A and Am genomes of wheat."; RL Unpublished.. XX RN [2] RP 1-13135 RA Wicker T.; RT "Direct Submission."; RL Direct Submission to Repbase Update (from TREP) (JAN-2003).. XX SQ Sequence 13135 BP; 3033 A; 3040 C; 3806 G; 3256 T; 0 other; ccgcactacc agaatttagg cagttgccga cgggcatatc tatgccgacg gcgtttctcc 60 gaatataccg acgcgggaca tcggcataga gcaggacgtc ggcatatcac gtggcccgtc 120 tacccgtgcg gcgacggcag tttgacggcg tcaggctacg ccgacgggct aacggtggcc 180 gtcggcatag ctacgccgac gtcatcgatc caccgcgccg ccacgtcatc gatccgcgtc 240 gtttgccggt cctgtggggt ggcatttcta tgccgacggc taggccgtcg gcataggcct 300 ggcccacatt tttgccacgt cattgatccc cgccctacgc catgtcatcg atcaagggct 360 ctaccgtttc gtggccgtag ctatgccgac ggctaggccg taggcataga tttctaataa 420 tatttttata ttttttgtat ttttctctta ttatttttta tttttttcca atactaattt 480 cattaactta aatgtacaga aaacatatat cgattgcccc ccacacaggc cttcttccgt 540 cgtgtcatgg agaggttaga cgggacgggc cgggtacctg tggggggtag caatgccgcc 600 aggtgttgcg gtgggccctc ctacggttgt ggaaacattg gcaggcgcag gcacgcggct 660 ccggggtgtg ccccctcccc cctcacgggc gtcaatgccg tcttgcctcg gggggggggg 720 ggaatggcca cgtcgggtcg acgcagaggg aatcttgggg tgggttgtgc cgggactgtg 780 ttgggggtgt acctatggct gggctatgac aacaaggtga aaaggtccac cggtcaaact 840 acgtccagcg aaagtcaaag ggatagaccc ggcggtcgtc tgtgtcaggg ttagatggga 900 cggggtacct ggggggtagc aatgccgcag gtgttcccgg tggccctcct acggttatat 960 aagcatggtg gcaggcgtag gcacccggca cgcggcttgt atgaggtccc ggtgcgacgc 1020 tccggtggca ttgctacccc cctagggccc ctgtcccgcc aaaccctgta acgtttgacc 1080 acgggatcta cccctttgac tttgcatgga caggctttga gcagtagatg tatccacccg 1140 gttgtctaag gttagcccag atgttgcacc aaagtgttcc tatgggctga cctatcgcaa 1200 ccaggtggaa gagtccaccg gtcaaagccc gtccgacgaa agtcaaaggg ctagatctac 1260 tggtcatctg ggattcgggg tgtccttcgg ggtatagcta tgccatcgaa acatcgcacg 1320 ggtcccgatg catgtgtgaa agtgttctgg catgtgtaga cgcccgtctt ggggctccgt 1380 ggtgtgcccc ccctccacgg aaggcagagc agccgtcact tagaggggga tggtgcgggt 1440 gcggtggaac cggagggaat ctattgttgg gttgggtcca gaccgtgttc aggaatgttc 1500 ctatgggctg acttatcaca accaggtgga agagtccacc agtcaaagcc cgtccggcaa 1560 aagtcaaagg gctagatcta ctggtcaact tggattcgcg gtggccttcg ggttgtagct 1620 atgcaccgaa acatcgcacg ggtcccgatg catgtgtgaa agtgttctgg catgcgtaga 1680 cgcccgtctt ggggctttgt ggtgtggccc ccctccacga aaggcagagc agccgtcact 1740 tagagggggg gggggatggt gcgggtgcga tggaaccgga gggaatctag tgttgggttg 1800 ggtccaaacc gtgttcgggg atgttcctat gggctgacct atcacaacca ggtagaagag 1860 tccactggtc aaagcccgtc cggcgaaagt caaagggcta gatctactag tcaactggga 1920 ttcggggtgg ccttcggggt gtagctatgc caccgaaaca tcgcatgggt cgcgatgcat 1980 gtgtgaaagt gttctggcat gcgtagacac ccgtcttggg gctccgtggt gtggcccccc 2040 tccacggaag gtagagcagc cgtcagttag agggggggat ggttcgggtg cggtggaacc 2100 ggagggaatc tagtgttggg ttgggtccag accgtgttcg gggatgttcc tatgtgctga 2160 cctatcgcaa ccaggtggaa gagtccacca gtcaatgccc gcccgacgaa agtcaaaggg 2220 ctagatctac tggtcaactg ggattcgggg tggccttcgg ggtgtagcta tgccaccgaa 2280 acatcgcatg ggtcgcgatg catgtgtgga agtgttctgg catgcgtaga tacccgtctt 2340 gtggctccgt ggtgtggccc ccctccacgg aaggtagagc agccgttagt tagagggggg 2400 gatggtgcgg gtgcggtgga accggaggga atctagtgtt gggttgggtc cagaccatgt 2460 tcggggatgt tcctatgggc tgacctatcg caactaggtg gaagagtcca ccggtcaaag 2520 cccatccgac gaaagtcaaa gggctagatc tactggtcaa ctggaattcg gggtggcctt 2580 cagggtatag ctatgccacc aaaacatcgc acgggtcccg atgcatgtgt gaaagtgttc 2640 tggcatgtgt agatgcccgt cttggggctc cgtggtgtgg cccccctcca cggaaggcag 2700 agcagccgtc acttagaggg gggatggtgc gggtgcggtg gaaccggagg gaatctagtg 2760 ttgggttggg tctagaccgt gttcgggaat gttcctatgg gctgatttat cgcaaccagg 2820 tggaagagtc caccggtcaa agcccgtccg gcgaaagtca aagggctaga tctactggtc 2880 aactgggatt cgaggtggcc ttcggggtgt agctatgcca cgaaacatcg cacgggtccc 2940 gatgcatgtg tgaaagtgtt ctggcatgcg ttgacgcccg tcttcgggct ccgtggtgtg 3000 gcccccctcc acggaaggca gagcagccgt cacttagagg ggggggatgg tgcgggtgcg 3060 atggaaccgg agggaatcta gtgttgggtt gggtccaaac cgtgttcggg gatgttgcta 3120 tgggctgacc tatcacaacc aggtggaaga gtccactggt caaacccgtc cggcgaaagt 3180 caaagggcta gatctactag tcaactggga ttcggggtgg ccttcggggt gtagctatgc 3240 caccgaaaca tcgcatgggt cgcgatgcat gtgtgaaagt gttctggcat gcgtagacgc 3300 ccgtcttggg gctccgtggt gtggcccccc tccacggaag gtagagtagc cgtcacttag 3360 agggggggat ggtgcgggtg cggtggaacc ggagggaatc tagtgttggg ttgggtccag 3420 accgtgttcg gggatgttcc tatgggctga cttatcgcaa ccaggtggaa gagtccaccg 3480 gtcaaagccc gtccggcgaa agtcaaaggg ctagatctac tggtcaactg ggattcgggg 3540 tggccttcgg ggtgtagcta tgccaccgaa acatcgcatg ggtcgcgatg catgtgtgaa 3600 agtgttctgg catgcgtaga cacctgtctt ggggcttcgt ggtgtggccc ccctccacgg 3660 aaggtagagc agccgtcagt tagagggggg gatggtgcgg gtgcggtgga accggaggga 3720 atctagtgtt gggttgggtc cagaccgtgt tcggggatgt tcctatgggc tgacctatcg 3780 caaccaggtg gaagagtcca ccggtcaaag cccgtccgac gaaagtcaaa aggctagatc 3840 tactagtcaa ctgggattcg gggtggcctt cggggtatag ctatgccacc gaaacatcgc 3900 acgggtcccg atgcatgttt gaaagtgttc tcgcatgtgt agacgcccgt cttggggctc 3960 cgtggtgtgg cccccctcca cggaaggcag agcagccgtc acttagaggg gggatggtgc 4020 gggtgcggtg gaaccggtgg gaatctagtg ttgggttggg tccagaccgt gttcgggaat 4080 gttcctatgg gctgatttat cgcaaccagg tggaagagtc caccggtgaa agcccgtccg 4140 acgaaagtca aagggctaga tctactggtc aactgggatt cgcggtggcc ttcgggttgt 4200 agctatgcca ctgaaacatc acacgggtct cgatgcatgc gtgaaagtgt tctggcatgc 4260 gtaaacgccc gtcttggggc tccgtggtgt ggcccccctc cacggaaggc agagcagccg 4320 tcacttagtg gggggatggt gcgggtgcga tggaaccgga gggaatctag tgttgggttg 4380 ggtccaaacc gtgttcgggg atgttgctat gggctgacct atcacaacca ggtggaagag 4440 tccaccggtc aaagcccgtc cggcgaaagt caaagggcta gatctactgg tcaacttgga 4500 ttcggggtgg ccttcggggt gtagctatcc caccgaaaca tcgcatgggt tgcgatgcat 4560 gtgtgaaagt gttctggcat gcgtagacac ccgtcttggg gctccgtggt gtggcccccc 4620 tccacggaag gcagagtatc cgtcacttag aggggggatg gtgcggatgc ggtggaaccg 4680 gagggaatct agtgttgggt tgggtccaga ccgtgttcgg gaatgttcct atgggctgac 4740 ttatcgcaac caggtggaag agtccaccgg tcaaagcccg tccggcgaaa gtcaaagggc 4800 tagatctact ggtcaactgg gattcgcggt ggccttcggg gtgtagctat gccaccgaaa 4860 catcgcacgg gtctcgatgc atgtgtgaaa gtgttctggc atgtgtagac gcccgtcttg 4920 gggctccgtg gtgtggcccc cctccacgga aggcagagca gccgtcactt agaggggggg 4980 atggtgcggg tgcgatggaa ccggagggaa tctagtgttg ggttgggtcc aaaccgtgtt 5040 cggggatgtt gctatgggct gacctatcac aaccaggtgg aagagtccac cggtcaaagc 5100 ccgtccggcg aaagtcaaag ggctagatct attggtcaac tgggattcgg ggtggccttc 5160 ggggtgtagc tatgccaccg aaacatcgca gggggatggt gcgggtgcga tggaacctga 5220 tggtgtggtg gcatgtccga agaggcggga cgcgtgtccg gggtgtgccc ccctcacgga 5280 cggcaccgcc gcaggcgacc ccacgcgttc gtttcccccc tccaggtgcg gggtaccggg 5340 tcccatacag acggtaaact aagaatctaa aaatgtaata attgaattag tgaactattt 5400 aaacaggtct aattgctttt ccctcggcgg ggtgggacta ttttttttta aaaaagtagt 5460 tgccatctat gcctacggca tagccgtcgg cataggcctc ctccctatgc cgacggcctg 5520 gctgtcggca tagagccacc cttatccact cgatggccat ctcgctgtca ggtgggacca 5580 ctcctatgcc gacggcctgg ccgtcggcat agggccacct tatcctcgtc accccggccc 5640 tcctcctcca ctcgtttctc tcctcgcacc caacctctcc tcgacctcct ctccgttagg 5700 tccggctccc tccccagatt tttttttgtt ttttcatgat tttgcagagg ataagagggc 5760 taaatgtgat agttgataga tgatagatga tagatgattg gtagatgatg atgatgatga 5820 tagatgattg gtagatgatg atgttgatga tagatgatgg tgttttttta tgcttcgata 5880 atttttagac gatgatgatg tttttttatg attcgatgat tgttagacga cgatgatgat 5940 attgtgatgt tctatgagtt gtgatgttct aatttttctt gctactgttt ttaggtggat 6000 ggatgtatgg ataaattttt cttagatgga ttcatggatg ttgttagaat catagatggt 6060 ggatggatgg aatgtcggtg aattttttta gaaactttgt ttgtcatata tttttaggtg 6120 gatggatgta tggataaatt tttcttagat ggattcatgg atgttgttag aatcattgat 6180 ggattccggt gagattctgt tttgtttgtc atatatttaa tgttaggtca tgttgacgaa 6240 tgtatgtggt aaagttattg atagatgaat ggatggatgg atgttggaca aaatttgaca 6300 cttgactgag atgtgatgat cttgttattt ttttgatact cataatgatc ctgataaaat 6360 aattgaagac aaaattttga gacttactaa gatgttatga tcttgctaaa aaaatgatac 6420 tcatgatgat gttgctaaaa aaatagaaga caaaagtttg acactttact gagatgtgat 6480 gatctaagtt gttctttcgg tggaatttgc aggctttgtg gtgtcgcatt tcatcggagt 6540 gaccgttgta cgacgcgttg gtccccctga gcatccctct gctgttcaac tacttcctct 6600 acagccgagg gtgagctaca agtccatccc ctccattttt tcatatcact agatttcatt 6660 ctcaagtcaa ctgacgtaac ctaggcgtct cccgtccgaa agggttgcat ggataaatat 6720 gcattcaatt gcatatttat caccgcagct ctttcggatt gtccagcgtt ttccacggac 6780 agcccgagga tgtgtagatt gggtatgttc tccatgttct accccgttcc gagacaggat 6840 ttcggcggcg cctccccatt gttctccgga gcacattgtt tcggctattt gccgagacgt 6900 gtatctggag aacagcgggg aggtgctgcc gaaattttgt ctcggaacgg ggtagaatgg 6960 agagtgtact caatctacac atcctcgggt gggattagga cccatcttta cctattagag 7020 atgtgggtgg attaaacgtg gtcgaaactg aggatttgat gccgttaatt taagtgaatg 7080 cttaattatg ttgtgtgggt tgcaaaaaag tagaggatgg cagataatca gtggatgtat 7140 agtggtttta tccgtcggaa tcgagtaaca tcagagtgga tcgcgaaaac cgatgtgtat 7200 ttgaaggaga tattccgtcg tccaatgaga attatcccac catgcccctg tgcgagatgt 7260 gccagacgtc accgtagaaa tcagacggac atgagtgagc accttcgcac gcacggatat 7320 atgccaaact ttgacatgcc gccgataaac atagccgagc aggaccatgg tagagaggag 7380 gtgatgcgac aacgcatcaa tagatacgag gacgacgggg tcagggacat gctagatgca 7440 tgtcattgtt gcagactcgg caaatgcgac accttcagag aatgaaccgg aggatccaga 7500 ggcaaccgca aaggccttct tggaggtctt ggcctcgtcg aagaaacctc tttatgcggg 7560 tgcgaaaata tctcagctgg atgccatctc gcaactgatt gcagtcaagg ctgagtacgg 7620 ctgtagccag aaatgcttcg aagcattcct gggagtatgg gctaacagcc tccctgaggg 7680 tcatgaactg ccgaaaagca tgtatgatac aaagaaaatc atgaaggcac tctctatgga 7740 ttatgagaaa atagatgttt gcccgaagaa ttgctttttg tttaggcacg agtatgcaga 7800 tgacaagtac tgtaggaagt gcggttcgtc ttggtacatt gaggtggtcg gtgaggatgg 7860 tgagaaaaag cagctaacca tccccgttaa ggttcttcga tatcttgatt ttataaaaag 7920 actgcagcgc cttttcatca cgaaggagtc tgccaaaatg atgaagtggc acaaggaagg 7980 tataaggtac aatccaaaaa aaatcataca tccatcggga ggggaagcat ggaagtcatt 8040 cgatgaagaa taccccgagg aagcagccga ggctgggaat gtcagaatag ccatatcagg 8100 tgaggggttg aatccatatg gtatgtcgtc caatccatac agctgctggc ctgtgtttgt 8160 aattccgctc aatcttcctc ccggtgccct aatgcaacgg aagaccatgt tcttgtcgct 8220 catcattccg gggcctgact acccggggaa gcaattgggt gtgtttatgc agccgcttgt 8280 ggatgctttg caccattctt ggcactttcc aaggttgaca tacgaccggg atctgcagag 8340 aaatttcttg atgaaagttt ggttgcacta ttgcatgcat gactttcacg gctatgctct 8400 attctgcgga tggtgtacaa gtggtaagat gccatgccca gtgtgcatgc aggctctacg 8460 aatgatttgg ctgagtaagg gtggcaagta tgtagccttt gacctgcatc gacagttcct 8520 ccctccagac catccagaca gggaagacaa gaagaacttc atgaaaggcc gggttgttca 8580 tgaagtaacc gagattccaa cattttcggg ggcagatgtt cttgctcagc taaaagctct 8640 caagcctaaa gtcaaaggca aaggcaaagc caaagccaaa ggcttcgagg gatatggtga 8700 gacgcacaac tggacgcaca ttaccccctt ctcggagctt ccctatttca aggacctcaa 8760 acttccttac aatattgatg tgatgcacac cgaaaagaat gtggcagagt cacttttcca 8820 cacgatcctc aacattcctg ataagagaag gatacgtaaa agctagagcc gatcaacaga 8880 gaatttgtga tagaccacgc ctgaacatga agcctcccac aggcggtcga aaaaactggt 8940 tcaagccaga tgctgacttt gtccttaaac cgccagaaaa aaagaagtac ttatctggct 9000 gaaacaaatt ttgaagttca ccgatggtta tgcatcgaat ataagtaagg gagtcaatct 9060 ttcaacgggc aaagtgaccg gcgtgaagag tcatgactac catgtatgga ttgagcggat 9120 aatgccggtg atggttcgag gctatgtccc cgagcatgtc tggcgagtgc ttgccgagct 9180 tagccatttc ttctgcatgc tctgtgctaa agaagtaagt aaagaggtga ttgaaaaatt 9240 gcataagaag gcaccggagt tgatagtaaa gctagagaag atctttccgc caggcttctt 9300 tactccgatg acacatctca ttctgcacct cgcgaacgag gtattgttgg ggggccctgt 9360 gcaaaatcgc tggcagtacg gccctgagag gcagaacaag catctccgac ggaaatgtgg 9420 aaacaaagct aagattaaag cttccatagc tgaggcagtt atcctagagg aggtgtcaga 9480 cctcaggaca tcatactatc cagaccacgt tccccatctg cataacaagg tgcctcgata 9540 caatatagaa gagcccaagt atcaacccag gctcgatcta ttcaacgcgc aaggtcggag 9600 ggctggggcc tccaaatctt ataacatgcc acgacaagag tgggagcacc tgatgttcta 9660 tatcttgcac aacatcaagg aagttgagga agtgtggatg aggtaatacc actacaccgt 9720 tcctttatgt cttccacatc atcatgtttc atgttcactt agtcccggtc taacaccgct 9780 tatctttttt tagtgatttc gttcaagagg aatggacggg agtgaatcct cctactgagg 9840 cggaggcact tactcttctc cgtcatggaa accctggacg taaaaatttt gttgcttggt 9900 tcatggataa agtaattttc cacactcccc tattaaatac ctacttcaac atttattagt 9960 taaccgaact aatgcacgca acaatttcca ttatacttgt agggaaaaga tctgaacata 10020 tctatggatg atgaattgag atgggtttcc atgggttttg accctgccgt catgacatgt 10080 aaaaagtatg atgtgaatgg gtatcgcttc catacagagg agcaccaaaa cagccgcccc 10140 gatcccaaaa ctataaatac tagagtgtac accccggtca aaattcagta gactactacg 10200 gaagggtaca aaatatatac gaggttaaat tccgccaggg gcgtgagacc ctaagtctgc 10260 ctgtgttcaa atgccgatgg ttcgatccgc gggagggggt aaaacatacg ccttccattg 10320 gtttggtcga agttaaacca tcaaccgtct atgccggagc cgatctcttc attgcggcta 10380 cccaagctac acaagtatat tatctgcctt acccatgcca gaaagtgtat ctaaagggtt 10440 gggaagttgt gttcaaggtg tcgccacatg gtaagcttgt cacatgctaa tagttcattc 10500 ttttgcagca actggatata ttctaaaggg gtccgtattc ccaaaggcct catcaccgtc 10560 ttcctgaagt tatattggcc ggggttgtac tgtcctgatc cagtcaggca gccggaccgt 10620 cgggttttgg ccacgagctg ggaccactgg gaagcggccc gccacgcgga ccatgagaac 10680 catgccaagg ccgtgatcac tactttctgg gtgagttctc ttcagaagta caagtcctat 10740 ctagtttcat gaatgattta actcatggct tctcccattc ttgtttcatg catgattgta 10800 gaaattctat cgagttcttc gggatcacag ggctagagcg gaccagatcg tgctgcgcca 10860 atgcaagaag aaggcccgcc agatgcagta cgaggtgcgc tatgtggcca tctccacata 10920 ctaccacgac tatcttggtg tgaagatgac caaggaagaa gcgcggagga tgggcattac 10980 cttggagagg cccgagttct tggcggtaag tataaaagat ttttcattat gctttcatta 11040 tgctttcatt accttgtggt acattatgct ttatgcttta tgcttccata acaccaattt 11100 ggacacacct acatgccatt atgcttttat tatgtaggtg tgtccaaata ggtgttatgg 11160 aaaagacgag tcctgggcgg cattggtgga tctttggtgt gatgaggctg gagcctgggc 11220 ggctatgaga accaaaaata aggctaaccg agggacggag ggagtacatg ctcagggaac 11280 cgaaaccact atctccacaa ggcagttaat gtatgactaa cctcattaaa cattcttctt 11340 cttctattta ccatcacttt cttatgtatg actaacctct gtttggtggt gcaggaggag 11400 aaactgaagc ggccgctctc acacatgcag gcgtgggaga tcgcccatac gcggaaggac 11460 cccaagcctg gcgagcccaa gtactacggc aagaagaccg cagagaggaa gaaggcctac 11520 tccaaagcgt atctggagtt acatcctgac acacctgacc ccgttgcggc gcctctggac 11580 gacatggcgg tggtgaggat ggggcccaag gagcacggtc gggaggcggt tctcgatgct 11640 gtgatcactc ctagtatctc ctacacacag cttcgtcgga tcgacccgag cctgagccag 11700 cgcacgagcc agccagtgac tagtacacag tacctctttc aggagcaaca atctgtaagt 11760 attttccctc ttatcttcat ttctcacttc attttccgca tttagtagtt ttatgagttc 11820 catcatgtca taccgtaggc ctacatggag tacacacgcc aggagaccat ggcgtggcat 11880 cagaggcttt atgaacacca agtgcagagg gatagccaga tgcagcaggc ttttcaggat 11940 atggcggccg gcaggtgtcc tcagttccct ccagcacaat gccctccagc acaaccagtg 12000 ctgatgagct ttgaggagtt tgtggcatag aacgctggcc cctcgccggt tagttcatcc 12060 ccaatctatt cacctaaagc atgtcatgcc tttcaacaca gtcatatatc ccgtgcatat 12120 gtcttttcaa catccaggga acaggtggat ctaccgttgg cggtggtctt cgcagcactc 12180 cggagacacg gagcccgacc actccgatcc acggaggcgg aggcggagga ggcggtcttg 12240 gcggtagcgc tgcctgtagc agtgacgacc tgggcttcgg cggtcttggt ggtgacgacc 12300 tccgtggtgc tcgacgtcct ggcgcttaag cctttgggtc acattgtggc ggtcttggtg 12360 gtgatgatac ttatatgctt gtgatgtttc ttattgttgt ttgtgagatt cttatgcttg 12420 gtggtgatga tacttatatg tttatgcttt gcgatgcttc ttatgatgtg tgatgatgaa 12480 tttgttctgt gatgctgctg ggccagctgt tatgtgatgc atatatttgt tgtgtgctgt 12540 atatattcaa atgaattgag ctgaaacaaa acagaaaaaa gaaaaaaaaa cagacagaaa 12600 ctatgccgat ggcaaggccg tcggcataga gctgccatga gatcccagtg gctgccacgt 12660 ggtaggtcta tgccgacggt ttagccgtcg gcatagtttc aaactaagcc gacggctaag 12720 tcgttggcat aggcctgctc caggagctcc cagtggctgc cacatggcag gtctatgacg 12780 acggtctagc catcgacata gattcaacct aagccgacag ctatgccgac ggccaggcca 12840 tcggcacaga cctgccacgt ggcgagcaag cattggtcag cacttgacgg cggccgccat 12900 taggcgataa cgttgccgac ggccggggcc gtcggcatag atgtacggac accatcggga 12960 tagggcctat gccgacggcc tttctatgcc gacggcattc ctggctacgc cgacggatat 13020 gttgctgaca gccctatgcc gacggatgcc gtcggcatag gcctgtcccg acggccattc 13080 agggatatgc cgacggccca ggccgtcggc atagggtgcg attccggtag tgccg 13135 // ID GRANDE1_ZD repbase; DNA; GRAS; 13769 BP. XX AC X97604; XX DT 04-MAR-1998 (Rel. 3.02, Created) DT 08-JUL-2004 (Rel. 9.06, Last updated, Version 2) XX DE Z.diploperennis DNA for Grande1-4 retrotransposon. XX KW Gypsy; LTR Retrotransposon; Transposable Element; GRANDE1ZD; KW GRANDE1_ZD; Grande1-4; Gypsy-like; LTR; ZDGRAND14; direct repeat; KW gag gene; POL gene; retrotransposon; Tandem repeat. XX OS Zea diploperennis OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-13769 RA Vicient M.C.; RT "Caractrizacion molecular de Grande1, un nuevo tipo de RT retrotransposon del genero Zea. PhD thesis."; RL Unpublished. XX RN [2] RP 1-13769 RA Martinez-Izquierdo A.J.; RT "GRANDE1_ZD."; RL Direct Submission to Genbank (26-APR-1996)J.A. RL Martinez-Izquierdo, CID-CSIC, Jordi Girona Salgado, 18-26, E- RL 08034 Barcelona, SPAIN. XX DR GenBank; X97604; Positions 6 13774. XX SQ Sequence 13769 BP; 3767 A; 3710 C; 3428 G; 2864 T; 0 other; tgtgggggat ggatatcccc cgggtccact aaagagtaaa agacctcacg aaaggcccaa 60 gggcccaata aatcgtaagg tcattctttc gtgggcctgg ggagagacga ccagcaaagc 120 agagcgacat gaggccagat tgatgcaaac cttgatggcc cacaacgtcg agcgagtgat 180 cgcaatagag atccgacttt cccacgctgg agcccccatg cagcggagcc atgcgaggat 240 aagtcggcag gattacatgg agataaactc aagcagttca ctgtctttta gctactcgtt 300 gttatcatat ccacttgtat tgcccacggt cgagtatata aggccagggg gcaccccttc 360 agcacgatcg accctattac ttagccgacc cacgatcaac tctctgtatt ctctctatag 420 agaactctct tgtgtccaca ttcaccaagc atactcacca gagcgtaggg tgttacacat 480 ctctaagcgg cccgaaccta taaaccttgt ccactgttcc tcgtgcaatc ggcacgaacc 540 attttgctac aagttgtcga caaccgtcct tactcctaaa aacaccttga ggggcaaccc 600 cgggtgtgcg gtcggaccca aaacaccgac agctggcgcg ccaggtaggg ggtgtgtcga 660 cgatccaagc tagctcaatg gccgtcacct tctacaacaa gatcaccctg cgtcccggat 720 ccatattctg cttcggaaca aatctcatcc gtagcggatg aagaggggaa ttctacaccg 780 tatcgcggat ccgccagaaa agaagtctcc tccaacgaac tccgaaaatg ccggagaaac 840 gcaacctccc gctcttcgga aaaagatcgt ctccggaaag tcaggggccg agggcttgct 900 gacccggaaa actccattgt ctacttcccc gacaaaagaa tggacaccgg atcgcgagga 960 agaaggagac cagagagaag caagttgttc tttccgttcc tccggcctca aaggagaacg 1020 gaaagaaggt cgccacgaca gcagcaccat tctaccccga cgtcctcttc atcgggagag 1080 tggagtcgcc taccgtctcc gacgacgagc cgaccgcacc cggagaagaa ccgcctcaac 1140 gagaatcccg ccgacggagg aatcggtgca ggaacgttcg atgacatcac gcggccggag 1200 aacgggatcc ggagcagcct gtctcgcgag acgaggtctc ggagaaagga gagactccgg 1260 aagaacgcgt cttcagagag cgaaggaact cccgacgacg tgatcgccga tgggctcagg 1320 aacaagccga gcaagatgca aggcaacgcc gggagaatcc attcttcggc tcaacctgaa 1380 tcccgacttc gcccgagcta tgaacacgcc gagcgaagtc ggaggggtac tagctcggat 1440 agctgatgga cttcctcgga ctcccgacgc tgagggctac cgacgcctgt tcacccaggc 1500 agccaaccat cttctaccgc ttgctcaccc gccgaacgat ctacgacacg ccatcaacag 1560 tcgcgagatg cgcgaagctc catcaatctt cgcgcgaacg gcggcatgag aacgagattc 1620 gacgccgaga ggagtacgac agggatcatg gcatcccggc tcagagccag gccaccagaa 1680 ctaagtcggc gacggcctca actggcggta ccacccgggg atggtcgagg aaccacaacc 1740 acaactcccc tccccgggac agacatcgtc ctcgacgaca ggaggacacg tgcggagtat 1800 ccgctcttac tccgcgcctt agggccatcc aatggcctcc caacttcaag gtatccaatg 1860 tcgacaaata tgaacctaag caggatccag ggggttggct agccgtctac accaccgctg 1920 ctcgagctgt cggggcgtcc gaagacgtga tgaccgcgta tttacccatc gtccttgggc 1980 aagacgcgct gtagtggctg cgagatctac cccgacacaa catcgacgac tggggagact 2040 tcagtcgacg cttcaccgcc aacttccagt acctctccga caagccggcg caaccgtggg 2100 acctcaaatc catcaagcgc cggggggatg agactctccg gtcgtacctc aaaagattcc 2160 agaccatgag aaatggtatc cccgaggtca cggaggcggc cgtgatcgag gacttctaca 2220 gaggatccaa tgactcggct ttcgtccgag ccatactaca gaaggcgccg actacttccg 2280 aagagctgtt ccgggaagcc gacctctaca tcaccgccga tgagtgagct caggacctca 2340 tcggaggagc aaagcccgca ccggcagcac cacgacgtga cgcgaaccag caacccgaca 2400 aacgctggga gaagaggcct cgcgaagaag tacacgccgc cagaccacct gcctctcgcg 2460 cccgaggagg accccgcgga ggcgagcgca cgctggacga catcctcgac gcccagtgcc 2520 cgtaccacaa ggacatgcgc cacactcttc gtaactgccg ggacttcaag cactccgtcg 2580 ggcacggtcg acccttccaa cctctacctc ctcctccacc gaggggaggg ccagatgaac 2640 cacgacaacc ccatcagcag gaggagggag gaggaggagc cttcctgcgc gttgacaggg 2700 aggtcaacgt catctttggc ggacatgggt cgcaggagaa caaaagacaa caaaagctca 2760 acgaccgcca gatactggtg gcgaccaccg gtcctcccgc cccataccgg tggtcggagc 2820 acccgatcac tttcactcgg gaggattaat ggctcaactt cgaccatcca ggcaaatacc 2880 cgctcctcgt cgatccggtg atccgagaga gccgggtaaa gaaggtgcta gtggacgggg 2940 ggagcagcat caacgtcacc ttcccccgga cactccaagg cttgggagtt cacctcaaag 3000 aactccacga gtcggacact cctttctttg gcatcgtgcc gatggaaggg gaatacccgc 3060 tgggccacat ctacatgcca gtcaccttcg gaactccgga gaactacaga accgagttcc 3120 tgaggttcga agtggcgaac tttgattgcg ggtacaacgc catcatcggg aggccgggac 3180 tggccaaatt catggccatc cccccattac acatacatca tactaaagat gccaggagcc 3240 gcaaggaatc ataactgtgc gtgccgattt ccaaggcgcc gcagagtgct tcccgagtgg 3300 cccatccaaa acagcccctc accacaaaac cgacgacggt ctcttcagca caggcgaact 3360 ccaagcctga ggaagacctc gcggtaccgc aaacgaagct caggccgcga cctctatgcg 3420 gccgactgaa gaaaccaaga ggatcaacct agggttcgct gatgaacgca agacggccat 3480 catcagctcc agcttggacg acaaatagga aagcgcgctc gtccagtttc tgcaagataa 3540 ccgagatgta ttcgcatggc aacccgcgga tatgccggga gtcccaagag aactggccga 3600 gcacaaactg aaggtctatc cccaagcgag gccgattcgg caaaagctac atcgtttcac 3660 gcccgacaag agagaggcca ttcgcgccga gttagctcgc ttggtcgcgg ctggatttat 3720 tagagaagtg ttgcaccccg agtggttagc caaccctgtt cttgtactca aaaagaataa 3780 agtggattgg cgcatgtgcg tcgactatac tgatctcaac aaacactgtc cgaagggatc 3840 ccttcgggct cccaaggata gatcaggtgg tggactccac cgctggatgt tccatgctgt 3900 ctttcttaga ttgctattcc tggtatcatc agattagttt ggcgaaggaa gacgaggaaa 3960 aaacggcgtt catcactccg tttggtgctt tctgttatac ctccatgtcg ttcggcctca 4020 aaaacggtag agcgacttat cagagagcca ttcaaacatg cttagccaat cactggggca 4080 agcgtgtgga ggcctacgta gatgatgtgg taatcaaaat agagaattcg gagaacttca 4140 tcgaagactt acagctggtt ttcaacagcc tgagacgata tagatggaag ctcaatcctg 4200 aaaaatgtgt tttcggggta ccagcaggaa agttgctcgg gtttatcgtc agccaccgag 4260 gaattgaggc taatccggat aaaattgaag ctatcatgaa gatggaagct cctcgatcac 4320 aaaagaaggt tcagcgactt actggatgta tggcagcttt gagcagattt atatccaggc 4380 tggggggaaa aaggtttgcc gttttacaag ctactcaaga aggtggataa gtttcaatgg 4440 acttcagaag cacaagaagc tctagatgca ctgaaaaaat tcttgacaac accaccagta 4500 ctgaagccac cccggcgagc tacatccact caaccggctg gagatttgct actgtatatc 4560 tcttgcacga ctcacgtggt aagcaccatg ttggtagtcg agcgagtaga agaaggacat 4620 gcctacccag tgcaacatcc tgtttacttc atcagtgaag tcctggtccc tcaaagaaaa 4680 agtatcctca agttcagaag ctattatacg cagtacttct aactgcccgg aagctgcgtc 4740 acatctttga tgaccacaaa gtcatagtag tcactggttt tccgataggt gatattcttc 4800 acaacaagga ggccatgggc ccaatagcca agtgggcttg cgaactggga tctcatgaca 4860 tcgagttccg acctcgcact gtcatcaaaa ctcaagcaca tggttgattt cgtatcagag 4920 tggaccgaac agcaagtacc gagataaccc agagactgca gaagtatggc gaatgtattt 4980 tgatggctcg ctgaagctgc agggagcagg agcagggatc ctcttcaccg cacctggagg 5040 cgaacacctc aagtacgccc tccagttgct atttccggcc tccaacaatg cagccgagta 5100 tgaagctctg atccatggat tgaacatcgc catatcattg ggcatcaaga gattgatggt 5160 gtacggagac tctctggtag tcattatcca gataaacaaa gagtgggatt gttcaagcga 5220 ttcaatggga aaatactgca ctaccgtccg aaaactggag gataaatttg agggtctgga 5280 atttcatcac gtagaaagag atcggaacac agcagccgat gtactgtcca agctaggatc 5340 cagtcgaact caggtcccac ccggagtctt tgtgcaagaa atactacagc caagtatctc 5400 aatggatcaa gcagaagagt gcaacattat agatcgaccc gagtcagact ctgatgactg 5460 gagaaggccg atcattaagt atataaagaa tgaagaagaa ccagacgaca agaactcggc 5520 agaacgcatt gccagacagt cggctcacta cacactcatt ggggagacat tgtatagaag 5580 gggtccatca ggcgtcctca tgaagtgcat ccttccgtcc actgggaagc aacttctgga 5640 agaggtccat gctgggcaat gtggaataca tgcagcctcc agaacacgag gtagggaagg 5700 tcttcaggtc aggattctat tggccgacag cgaaaaacga tgcagccgag ttagttcaga 5760 ggtgcgaagc ttgacaatac ttgtcaaagc aacaacacat gccagcacag caactgcaga 5820 ccataccagt gacttggcct tttgcatgct ggggactgga tatgattgga cctttcaaga 5880 aagctcaagg gggatacact catgtattgg tggcgattga caaattcact aaatggatag 5940 agttcaagcc cattgcctct ttaacctctg ctaaggtcgt ggaattcgat aagaatgaag 6000 acattcgcag agaagtggat aagggaatta cctgatgttg tctggagcct atgaacacct 6060 acccgagctt tgcatggaga cactcctttc ttcatggtct atgggtcgga ggcagtggta 6120 ccatggctga tctcaagtta ggggcgccaa ggctgatctt tgaaagcata gcgataagct 6180 gaggtcacca ggctggacat agatgtactc gaggaagatc tgaacggagt aattcaatca 6240 ccaaggtatc cgcagactct aaaggcgcta tcacgacaag gctgtgcgac acccattgtt 6300 ctcagtaggc ctcgttctcc tccgccgaat tctaacgggg gagggacgac acaagttatc 6360 acccttatgg gaaggaccct tcatggtagc agaagtcact cggcccggat cgtatcgtct 6420 cactcagatg gatggcacag aagttgggaa ctcctggaac atagaacacc tcagaaaatt 6480 ttatccctag ctgtatttca aaactgctgg gacgacgatg tactctgtaa agtggaaata 6540 tgtcatcaat aaaaaagggg tttcaaagat atccggtttg ttcacgattg acttgcactc 6600 ttacttagct cggggtgacc actatgccct gctaacggag caatcgactt aagtcggcag 6660 cgacttaagg cggtgcaaca tgctctcgct tacttaactc ggggtgacca ctatgccctg 6720 ctaacggagc aatcgactta agtcggcagc gacttaaggc cggtgcaaca tgcttatgct 6780 tacttaactc ggggtgacca ctatgcccta ctaacggagc aatcgactta agtcggcagc 6840 gacttcactt tgcctactac ggcccatcga ctaagtcgca gggactaagg cggtgcaaca 6900 tgctcacgct tacttaactc ggggtgacca cgtatgccct gctaacggag caatcgactt 6960 aagtcgacag cgacttaagg cggtgcaaca tgctcacgct tacttaactc ggggtgacca 7020 ctatgccctg ctaacggagc aatcgactta agtcggcagc gacttaaggc ggtgcaacat 7080 gctcacgctt acataactcg gggtgaccac tatgccctac taacggagca attgacttaa 7140 gtcggcaacg acttaaggcg gtgcaacatg ctcacgctta cttaactcgg ggtgaccact 7200 atgccctact aacgaagcaa tcgacttaag tcggcagtga cttaaggcga tgcaacctgc 7260 tcaatgccta tgcaattcag gggatgactt ctatatcccg caaacacata tcataatcat 7320 cgtgcgtcat atcattgctg caaatttacg aactgatgaa ttctgataca ataagagagt 7380 aattatatca ttcgaatact gaactaatgt cctctaacaa atactcgatc atgctaaccg 7440 cgcgctcaaa gcacgcaaca gtgtttctct atttcacaat gtttttctca ggagcaaccg 7500 atgaagaagg gcgactcgag gaatcagggg cagcattcac atcagccctt atgtcttcag 7560 gaacaaccac gccgggtctc ctcatcaaga ttcgtcccga ccgaatagcc ttgtccatgg 7620 ctctgtcgcg ctgggcttcg agagtaacag aagtttcttc ggcaacttta gcagccagtt 7680 gagcagtctc taactcctgg ggcaatggat ttcttggaag ctcggagtta tttgatggtg 7740 gcatccttgg ctgatatcaa ctgcttgagg cgggtcactt cgtccgcgga ttcctgcaac 7800 ttacaacgtt gattgtccaa ttcctccatt gtaaaggcgg tggactcctc tccaagatgg 7860 tcagcgagtt gctagaatca cgatacaatc tgtcaagatt gtctcgagaa gcagcaagga 7920 tacgtttttc ttcctgcgag caaaagtcaa ctccttcaag aaccaagcaa ataataggaa 7980 cacagcaagg caaggcacag ttttgtaaat caccttttca aagtgcgagc tagagcatag 8040 taaggaagag ctccagggca ttggggttca ttccaaggca gcggaggaac tgacccagtt 8100 cagtttgggt ctgtgtactt ccctcaaatc agcgaccgct gagccaatca gctagatctc 8160 gggaatgttc tcctcaagaa tgaaatctgc cgagtcatcc tagcaagaga taatcaaaca 8220 aaacgggttc agaaggtaag gcagtccacg gcgaaggcaa agagaagcaa aaaagcacta 8280 accattgttg gttgcctcca attcagagac acgatgttga agtgacactg gattccaaca 8340 cgcaagagac gaagccactt ctgggacgga agcaccctgt aatctcagct ggctggccat 8400 cccatccacc aaagcctaat gaggagaaca gatgagtata atgacagcag ttcatgcaat 8460 gtaaaaatca agctaaaata catcacagta cctggaggtt ggagaagaac gaagggatcc 8520 ccaaatcagg agagatcagt cgataaccag gcgtgaggct accatccgaa gcagcttgca 8580 acgaaccagt aggaatcaac tcggtgcctt caacagagcc aaacacctga tcagcgggga 8640 cgctgccctc taaagcgact ccctggtcca aggtttgagc taccaccata cagccatagt 8700 gtggaggaga tcctgcatga acgtccatgg aagtacagga aggagaccct gcccgggcac 8760 cctcgggggc tgggtcatag ttggcactgc acgcttgagc cggatcaccc ccggcagcac 8820 cctcgggggc tgggcagtgg cttacactct tcacccgagc taagtcatcc ccggcgacac 8880 cctcgggggc tgggcatgtg tcggcactat cttgaagacc aagctctctg cagtaaccac 8940 ctctaaggtt gacgggccct cagctacttc cataggacca agacgatcca agtcagcctc 9000 ctggccctcg agatcgcgct ctaaggtcga cgaggcacgg gatgacctca acccagcatc 9060 gggcacgtca gcgcaagcct ccattgcacc atcttccact ggctccgata acaagtcctc 9120 tgggaccata tcctccagag tctgatcaaa gttcgccagg gacagttctt gcagaccaat 9180 gagggcagac aaagaaggag agggaactcc actactttca ccgctggcga tgaactgccg 9240 actatttttt ccgagtcaaa ggagcttcat tttcttcctc ctcatcatcc acattggcaa 9300 cacaagcagc accccccatt tggggaccag ccaacagatg gggggcaccc actattaggg 9360 ttcaacagag gattggtaca ccattgggtc agcatcagta aacccagtcg gacaacaccc 9420 tgacctaaac tagatttgcc gaaggggcac tttttgtttt tctcctcatc agcggaaggt 9480 tccagttatt gttcgccaag ggggcctgga gagtactgaa acgtttctga gcatccaaag 9540 tcgtatcaac tctgggaggg gcaccactgc caacgcccca gcaggagcag catcggaaga 9600 atcctcggct agcaaatcga gcatagcgtt tatatctgca tcactaggat tcaggggcac 9660 ctcaaaatgg acctgccgtt cgtcatcagg aatctcccca agcaaagcaa ccaaagcact 9720 gacttcttca gcagagggtc gcactctaag gcccaaactg ccatcagtaa tgggtggatt 9780 cgatacgaaa agggtgaagg ctttgggagg aggcaagttc caggccgagt acgccactgg 9840 agcaccaaca tttgacacct tgcccctgag gatcatttca agtcggctca ccaaatctgc 9900 agaaggaatt ctcctattgg taaccggagt tgagtcggct agccctcgat acagataagc 9960 tggataggcc ctgtctttca gtggctgact attcttgaaa acaaagtcag taaccacagc 10020 ttcagcagtc agaccccttt ctttcaacag tccaacttca gttagcaaca cacttgcctc 10080 agctacctcc tgatctgtgg gagactcggt ccagcttggg gtgcgaacgt ccggctgtct 10140 acccgaccgg gaggggagag aattcccata attctcaact atgaaccact ctaggtgcca 10200 tcctttaatg ctgtccttga gagggatctc gagatattca attttcctct cgcggcgcat 10260 ctccaagctg gcacccccga ccaactgatg ttgtcccccg accatcccag ggcgacaatg 10320 atacaagtat ttccataaat cgaaatgtgg cagcacgcca agaaaggcct cgcataagtg 10380 aacgaaaatg gagatttgca taattgaatt ggggttcaga tgggtcaagt taatatgata 10440 gaaatcaagg aggccgcgga aaaagggaga aatgggaagg ccaaggccgc ggagaaggaa 10500 aggggcgtaa acaacggact catgggtatc ctctatcgga acagtaaacc catggaaaat 10560 ccgccaagaa cagagttccc gcggaggaag aaccccgatg gatacgagat ggagaagttc 10620 agtttcagaa atgatggaca tatggttacc tgcgaaaggc aactggctgt tggggtcgat 10680 tggaggaatc accacagcag acgagctcgc ggtcttcctc ttgggtgcca tctcaattct 10740 accagcgagc agagcggagg cgaatggcag aggattcgga aacgggaaag caagaactag 10800 ggcacggaaa gcaaaggcgg ctaaaagtgc agctcttagg ggatattctc gagccagata 10860 ccgtttcaga aagtgcccag tcatcacccg acgattattc acaaaacccc agcagcatgc 10920 cacgtggaaa cacggcagtt acctccagaa caccggcgcg ccacctcatc actcggccat 10980 cgtcttcaaa ttggctcgag aggcctgcta tcactcggcg ttgcctctaa aatgctgata 11040 tagtgttcag tcgctcggcg ttgctttcta aaacgccgac ttcgcgttca gtcattcggc 11100 attacctcta aaatgctgac gtcgctttcc aatcactcag tgttgcttca aaacgacgat 11160 ttagtgtcag ttgctcgggg tgccctctaa aacgccgaca ccgtcttcaa agttactcgg 11220 cagctactcc gggaagcatc agtttgaccc ccaagttatt catctactgt ctcaaaggaa 11280 tcagttttac aaacaagcaa gacgagtcat caaatagaag ccaaagtcat tctttcatta 11340 aaagggaaga taacaaattt acaaatcaac tcttcgcgag ttgatacttc cctattacta 11400 cattacatta catttacctt ccctattact acattacatt acatttacta ctactactac 11460 tacactacgc tatactactc tacattacta ctacattatt ctaactacac tatactgata 11520 tttaaaagac cagtggctac tagccactgg ccctgttgct gccgccgccg ctaccgccct 11580 tggtgctgcc cttgctgctg ccgccccggt cgctgcccct gctgccgctg ccgtcgtcgt 11640 ccttgccgcc gccgctgccc ctgccgccgc cgctgccgtc accgtcgcca tcgtcgtcgt 11700 cttcgtcctc gccgccgctg tccgagtcct cctcatccga ggagtactcc gactcatccg 11760 agccctcgag cccggagcgc tcgacggccc ggatgtaagt ccagacctcc gcggcaatcc 11820 cctgagagtc gtccgagtca tcgaacgacg ctgggggaga gacgggagcc ggagacccct 11880 cggactcgga ggagaactcc tcctccgagt attccgagtc gccaaagtcc tctgacggag 11940 gagtcggctc gcgcttgcgt ttgttgttct tgcccatggt ggaaatgcaa ggagaggaag 12000 aaagcaagca gcggagaaca acaagagatg tgaaataacc agagaggcaa aggcactatt 12060 tatagaagaa gaaggcaacc gctcacctcc aaccgcggtc actgaacagt cgcaaagcat 12120 tcaataagca cttcaacccg tctgaagacg cgttagggct gacgccgttt cacgcaacac 12180 tacacccatt gggactccag tcaacagcgc ggaggatatg attacactcg ccgtcacatc 12240 acattactac tcagaagcag ctgactaaaa tactcagtgt accaagccgt cccttgccca 12300 cacccattgg gggggacgcc caggaattat tagtatattt ttcaaaacgg tcacatctgt 12360 gcagggcatg tagtgaatac ctcaagacaa aaatgagagg gatatcagta aggatcagag 12420 gaaagccaaa tatagccagt gaagtacaaa gtatgaccga cagaagcgat gtgaagacta 12480 gacagagaac gtccatcata cgtccaatca gtcgcagagc aaataaattg cattacctag 12540 caagatatgg atggattgcg aactcggctg ctaaagacaa aatatatgct gacctccgaa 12600 gcaaaatatt gatgacataa tgctgacctc caaagcataa tgcaaatagc tccatgccaa 12660 tttctacagg cggaaaggat aattttcagc aaagagacac aaaagaaaga ccttcgaaat 12720 ggattatcct caaaaatcca tttgaaggtc gggggctaca cccatttggt gccctctggt 12780 gcaccccatg gattatcatt ccaagccaag ataatgctga tttctaaggc atgggacaag 12840 attaaagaca aggctggccc tcaaccagaa cacaggagta caaatggaaa taatttctgt 12900 ggaagacctt tgagcagatt attttctaaa atctactcga agctcggggc tacacccaat 12960 gaagtttaga atcctacaaa ttgtaatgcc gacctctaaa gcacaagcac gaaactaagc 13020 ttcggtctac gagtgatcaa agcagaagaa gacaacagga agtcattttc ttcaaatcac 13080 ctgcaagctg gacctgggat ctttgggctg attacctcta aattaaccca aagatcgggg 13140 gcttgtgggg gatggatatc ccccgggtcc actaaaagag taaaagacct cacgaaaggc 13200 ccaagggccc aataaattgt aaggtcattc tttcgtgggc ctggggagag acgaccagca 13260 aagcagagcg acatgaggac agattgatgc aaacttggat ggccacaacg tcgagcgagt 13320 gatcgcaaca gagatccgac tttcccgcgc tggagcccca tgcagcggag ccatgcgagg 13380 ataagtcggc aggattacat ggagataaac tcaagcagtt cactatcttt tagctactcg 13440 ttgttatcat atccacttgt attgccccac ggtcgagtat ataaggccta gggggcaccc 13500 ttcagcacga tcgaccctat tacttagcca cccacgtcaa ctctctgcat tctcaatcca 13560 gagaactctc ttgtaaccac attcaccaag cgtactcacc aggacgtatg gtgttacgca 13620 tctctaagcg gcccgaacct ataaaccttg tccactgttc ctcgtgcaat cggcatgaac 13680 cattttgcta cagttgtcga caccgtacta ctcctaaaaa caccttgagg ggcaacctcg 13740 ggtgtgcggt cggacccaaa acaccgaca 13769 // ID CIN4L_ZM repbase; DNA; GRAS; 204 BP. XX AC M95061; XX DT 04-MAR-1998 (Rel. 3.02, Created) DT 04-MAR-1998 (Rel. 3.02, Last updated, Version 1) XX DE Cin4-like retroelement: mRNA sequence, ORF, partial cds. XX KW L1; Non-LTR Retrotransposon; Transposable Element; KW Cin4-like retroelement; ORF1; MZEORFB; CIN4L_ZM. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-204 RA Keith S.C., Hoang O.D., Barrett M.B., Feigelman B., Nelson C.M., RA Thai H. and Baysdorfer C.; RT "Partial sequence analysis of 130 randomly selected maize cDNA RT clones."; RL Plant Physiol 101(1), 329-332 (1993). XX DR GenBank; M95061; Positions 1 204. XX SQ Sequence 204 BP; 46 A; 36 C; 75 G; 43 T; 4 other; cagattcagt gggtgaaaaa agagaacggg tggaagctgt tagaggaaga gagattgcgc 60 gacgggactg gggtcatgat gatgatgatg atggggattt tcagcgtcag aggcgctgcg 120 gcaaccgccg tcatcgcagc ttgtctggtt gggcgcgctc gtssssatgt cgagggggca 180 tggacgactg ttacagttcc aatg 204 // ID DS repbase; DNA; GRAS; 409 BP. XX AC M17401; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 11-NOV-1996 (Rel. 1.1, Last updated, Version 1) XX DE Maize mutant wx-m1 Dissociation (Ds) insertion sequence. XX KW transposon; insertion sequence; Ds transposable element; DS. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-409 RA Wessler R.S., Baran G., Varagona M. and Dellaporta L.S.; RT "Excision of Ds produces waxy proteins with a range of enzymatic RT activities."; RL EMBO J 5, 2427-2432 (1986). XX DR GenBank; M17401; Positions 16 424. XX SQ Sequence 409 BP; 147 A; 54 C; 52 G; 156 T; 0 other; tagggatgaa aactgacgga aacggtattt attcggtaat cagttttttg gtcgtttttc 60 tttgattacg aataaatagg atatataatg cagtatacaa atttatattc ttgtttataa 120 cattgagctt gtaaagattc ataaaagtta atcctcaaat tcatcatata ttttctcaaa 180 gattgatata aaacttcggt atggcattcg aaaacaaatg tcggtaatat tttcaacttt 240 ttttgctgtg aagtgagcaa ataatacata aaacaattta tgtaatattt tattcttatt 300 tgtaataaat gcttgagaac ataacacaag atcactatca aattttatac atatctattt 360 taaaataatt aatttgtcct aacagctcag attatcactt tcatcccta 409 // ID Gypsy5-SB_I repbase; DNA; GRAS; 6850 BP. XX AC . XX DT 23-OCT-2009 (Rel. 14.12, Created) DT 23-OCT-2009 (Rel. 14.12, Last updated, Version 2) XX DE Gypsy-type LTR retrotransposon from sorghum: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW internal portion; Gypsy5-SB_I; Gypsy5-SB_LTR. XX OS Sorghum bicolor OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Sorghum. XX RN [1] RP 1-6850 RA Jurka J.; RT "LTR retrotransposons from sorghum."; RL Repbase Reports 9(12), 3100-3100 (2009). XX DR [1] (Consensus) XX CC Top 30 copies of the entire sequence are ~98% identical to CC consensus. XX FH Key Location/Qualifiers FT CDS 135..2009 FT /product="Gypsy5-SB_I_1p" FT /translation="MENQNSKSIHESAIPSVTDLLPWESSQPIQTSQYKLS FT SRLIAMIQNLSFSGKEDENPYLHIRDFEQTCDCLRIEGISDKTLRWKLFPF FT SLRGEARQWYSQKVSQQRGEWGVLRANFCLDFYSLDRIADLRLEVLSFKQK FT DNETLGKSWKRFSDLLESGPNLNLEDPVLLFHFFRGLQKNHKQMLHTMSRG FT SFFRIPTDEARVILDRILEAEMDNTLHDETYEAEVDTLPNSSSTLAIPSSE FT PQEEEIPPPDFMLDIESDLFADFGNISNYHSIDKPQNGQFSIYLPSEYQLR FT ELISVMSSEWLEESELSSDVIRLDTPSITIRCAYNSDRFNALYNPVVGINI FT MSESFALKLFKNLVLTPTTKVIKESSGRLVPSLGIINVLPLTVEGSMVHLN FT FYIFDTWDFDLLIGQPFRRLLYEGHTGKLHISFGKTFKFPITISHSLNNKA FT ESYLLPDPMEEVKAASLELLEESDLEDETPFFTEEEAEPSEPEPLDEFAET FT PRPPIELKTLPPGLTYAFLNNNPEFPVIISDKLTQXQTLRLMTILEKHHSV FT FGYSLQDLTGISPMICTHRIPTDPSVSPSREPQRRLNNTMREVVKKEVIKL FT LHAGIIYPVPHSEWVSPVKLCLKREA*" FT CDS 2006..4528 FT /product="Gypsy5-SB_I_2p" FT /translation="MTVIMNEKNELIPQRTVTGWRMCIDYRKLNKATRKDH FT FPLPFIDEMLERLANHSFFCFLDGYSGYHQIPIHPDDQSKTTFTCPYGTYA FT YRRMSFGLCNAPASFQRCMMSIFSDMIEEIMEVFMDDFSVYGKTFDSCLEN FT LDKVLQRCEEKHLVLNWEKCHFMVREGIVLGHLVSERGIEVDKAKIEVIEQ FT LPPPVNIKGIRSFLGHAGFYRRFIKDFSFIARPLTLLLAKDAPFEFDDACL FT TSFNLLKKALISAPIIQPPDWSLPFEIMCDASDYAVGAVLGQTKNKKHHAI FT AYASKTLTGAQLNYATTEKELLAVVFAIDKFRSYLVGAKIIVYTDHAALKY FT LLTKKDAKPRLIRWILLLQEFDLEIKDKKGVENSVADHLSRMYFKSPQETP FT INDSLRDDMLYGINRSDPWYADIVNFMVSGYVPPGANKKKLIQESRSHIWD FT EPYLFRVCSDGLLRRCVTTEEGWKIIDRCHSSPYGGHYGAFRTHSKIWQCG FT FYWPTMYEDTKQYIRRCGPCQRHGNINTRDAMPLTNNLQIELFDVWGIDYM FT GPFPPSKKCEYILVAVDYVSKWVEALPCKHADNVSSKRMFEEIIFPRFGVP FT RVVISDGGAHFIDKRFKQYLSKHGIRHNVATPYHPQTSGQAETSNKQIKNI FT LQKTVNEMGTAWKDKLPDALWAYRTAYKTPIGMSPYQLVYGKTCHLPVELE FT FKAHWAIKRWNMDLDVAGDYRRMQLSELEEWREKAYHNSKIYKERVKRWHD FT KRIKKKEFTPGDKVLLFNSRVKLFGHGKLRSKWEGPFKVINSSSHGAITLQ FT NDEGTLFKVNGQRLKLFLEPNKELEEIDVVHFYLPMEN*" XX SQ Sequence 6850 BP; 2138 A; 1433 C; 1343 G; 1934 T; 2 other; agcatttctg gcgccgttgc cggggagaaa gacggtttgc tgagataacc ttgagtctta 60 ctactagctt gtatctatac ttttatcttt tcttatcttt tatattcttt atttattttc 120 tttactctta ccttatggaa aaccaaaatt ctaaatcgat ccatgaatct gcaatccctt 180 cagtaactga ccttttacca tgggaatcat cacagcctat ccaaacatcc cagtataagt 240 taagttctag gttgattgcc atgattcaaa acctatcttt ttcgggaaag gaagacgaaa 300 acccttacct tcatattaga gattttgagc aaacatgtga ttgtcttcgc attgaaggca 360 tttctgataa aactttacgt tggaagcttt ttcctttttc tttaagggga gaagctagac 420 aatggtacag tcagaaggta agtcaacaac gaggtgaatg gggagtttta cgagccaact 480 tttgtctaga tttctattcc ctcgaccgta tagccgacct tagactcgaa gtcctatctt 540 ttaaacaaaa agataatgaa actttgggaa aatcctggaa acgtttttct gatcttttag 600 aatctggtcc aaaccttaat cttgaagacc ctgttctttt atttcacttt tttcgaggtc 660 ttcagaaaaa tcacaaacaa atgctacaca caatgtctag aggttctttc tttcgcatcc 720 ctactgatga agctagagtg atcctagata gaatcctaga agctgagatg gataataccc 780 ttcatgatga aacctacgaa gccgaagtag acactctgcc aaattcttca tctactttag 840 ctatcccaag ttctgagcca caagaggaag aaattccacc accggacttc atgctggata 900 tagaatccga tctttttgcc gattttggaa acatttcaaa ctaccattct attgacaaac 960 cccaaaacgg ccagtttagc atttatttgc caagtgaata tcaattgaga gagcttatct 1020 cagtcatgag tagcgaatgg ttggaggaat cagagctttc ctctgatgtg atccgtttgg 1080 acacaccctc tataactata cgctgtgctt ataattctga tcgatttaat gctctttata 1140 atcctgttgt ggggatcaac atcatgtctg aatcttttgc acttaaacta tttaaaaatc 1200 ttgtcttaac ccccacaaca aaggtcataa aggaatcttc gggacgatta gtccccagtc 1260 ttggaattat taatgtccta cctcttacgg tagaaggctc catggttcat ttgaacttct 1320 atatctttga tacatgggac ttcgacctgt tgataggaca accttttaga agactccttt 1380 atgaaggtca tactggaaag ctacacattt cttttggaaa aacctttaaa ttcccaataa 1440 caatttcaca ctccttaaac aataaggccg agtcatatct tttgcctgat cctatggagg 1500 aggtaaaggc tgcatctcta gagcttttag aagaatcaga cttagaagac gaaactcctt 1560 tcttcacaga agaagaagcc gaaccttctg aacctgaacc cttagatgag tttgcagaaa 1620 cacctagacc ccccatagag cttaaaactt taccacccgg tcttacctat gctttcctaa 1680 acaataatcc agagtttcct gtgatcatta gcgataaact cactcaggak caaactctgc 1740 gattaatgac cattcttgag aaacatcact cagttttcgg ctactcactc caagatctta 1800 caggaatcag tcctatgatt tgtacccatc gtattccaac agatccttct gtttcacctt 1860 ctcgagaacc ccaacgtaga cttaacaaca ctatgagaga ggtagttaaa aaggaagtta 1920 taaagttgct gcatgcaggg attatatatc ctgtgccgca cagtgagtgg gtaagcccag 1980 tcaagttgtg cctaaaaagg gaggcatgac tgttattatg aatgaaaaga acgagctaat 2040 tccgcaacgc accgtcacag gatggcggat gtgcatagac tatagaaaac taaacaaagc 2100 cacgagaaag gatcactttc ctttaccttt catagatgag atgctagagc ggttagcaaa 2160 ccattcgttc ttctgtttct tagatggata ttcagggtat caccagatcc cgatccatcc 2220 cgatgatcaa agcaaaacca cttttacatg cccatatgga acttatgctt accgtagaat 2280 gtcttttggg ttatgtaatg caccagcttc ttttcaaaga tgcatgatgt ctatattttc 2340 tgatatgatt gaagagatta tggaagtttt catggatgat ttctctgttt atggaaaaac 2400 ttttgatagt tgtcttgaaa acttagacaa ggttttgcaa agatgtgaag aaaagcactt 2460 agtccttaat tgggaaaaat gtcattttat ggttagggaa ggaatagtgc tgggacacct 2520 agtgtctgaa agaggtattg aggtagacaa agctaaaatt gaagtaattg aacaactacc 2580 tccacctgtg aatataaaag gaattcgaag ctttcttggc catgctggtt tttatcgtag 2640 attcataaaa gatttttcat ttattgctag accacttact cttttgctag ccaaggatgc 2700 tcctttcgaa tttgatgatg catgtctaac atctttcaat ttattaaaga aagcactcat 2760 ctctgcacca atcattcaac cccctgattg gtcgttgcct tttgaaatta tgtgtgatgc 2820 tagtgattat gctgtggggg cagtattggg acaaactaaa aataagaagc atcatgcaat 2880 tgcttatgcc agtaaaactt tgacaggagc tcaacttaat tatgcaacca ctgaaaaaga 2940 gcttctggct gttgtctttg ccattgataa atttagatct tatttagttg gagctaaaat 3000 aattgtttac actgatcatg ctgcactaaa atatttgctc actaaaaaag atgctaaacc 3060 tcgcctgatt agatggatct tattactcca agaatttgac ttagaaataa aagataaaaa 3120 gggagtagaa aattctgttg ctgatcactt gtctagaatg tattttaaga gtccacagga 3180 aacccccatc aatgattcac tccgggacga catgctctac gggattaaca ggtctgaccc 3240 ctggtatgca gatattgtta attttatggt ttcagggtat gtaccaccag gagcaaacaa 3300 gaagaagctt attcaagaaa gtcgttcaca tatatgggat gagccatacc tcttccgagt 3360 atgctctgat ggcttactca ggagatgtgt gaccactgag gaaggatgga agatcatcga 3420 cagatgtcat tcatcaccat atggaggtca ctatggagca ttccgtacac attcaaagat 3480 ctggcagtgt ggattctact ggcctacaat gtatgaagac acgaagcaat atatcagaag 3540 atgtgggcca tgtcaaaggc acggaaacat aaatacaagg gatgcaatgc cactcaccaa 3600 caaccttcag attgagctct ttgatgtctg gggaatagac tacatgggtc catttcctcc 3660 atcaaagaag tgtgagtaca tcttggtggc agttgactat gtctccaagt gggtagaggc 3720 attaccttgc aagcatgccg acaacgtcag ttcaaagagg atgtttgaag aaattatatt 3780 tccaagattt ggagtcccca gagtagtgat aagtgatgga ggagcacact tcatcgacaa 3840 acgcttcaag caatatctat caaaacatgg aatccgtcac aacgtcgcta ccccctatca 3900 tcctcagaca agtggccaag cagagacttc caacaaacaa atcaagaata ttcttcagaa 3960 gacagtaaat gaaatgggaa cggcgtggaa agacaagtta cccgatgcac tctgggcata 4020 ccggacagca tacaagaccc caattggaat gtctccatac caattggtgt acgggaagac 4080 ttgccatcta cctgttgaac tagagttcaa agcacactgg gccataaaga gatggaatat 4140 ggacctagat gttgctggag attatagaag aatgcaacta tcagaattgg aagaatggcg 4200 agagaaagca tatcacaatt caaagatcta caaagaaaga gtcaaaaggt ggcatgacaa 4260 gagaatcaag aagaaggagt tcacacccgg agataaggta ttacttttta attccagggt 4320 gaagcttttc gggcatggaa aactccggag caaatgggaa ggaccattca aggtaattaa 4380 ttcatcatcc cacggagcta tcacacttca aaatgacgaa ggtacgttat tcaaggtaaa 4440 tggtcaacgt cttaaattat ttttagagcc caataaagaa ttagaagaaa tagacgtagt 4500 ccatttttac cttcccatgg agaattagag cccgaccttt ttagtctgat gtttttgggt 4560 catatatata tttttctaaa tagttttgca tctagaaacg cgctcgagaa agtgggccca 4620 cagaggggcc agagagaggg cgggcgccca gatcaggtgg gcgggcgccc agctcctgtt 4680 ccccctcggt cccgattttc tctgttatgg aaaatgcact tatggtaatc cgaataatcc 4740 ctcagatgga aagtttcgca cgcacatcga cgggagcaac ccgaacaacc catagaggca 4800 ctttttgacc cctatataaa cagacccctg acctcagttt tcaaacacca agccaccaag 4860 ccttctctcc ttcaattaga gcttgattag ttccttgctg ctccaatggc cgagaagtac 4920 cacgatgatt gggaagtcgt ccccttcaac ctcaacatgg agcctgtgga agaccccgat 4980 gcccgtgctc tcgtcccggc caacacagag cgacagctag aagccatgcc attacgccaa 5040 cgcagctccg cccaatccta ccatgctcaa ccagttctca ccgcaccgcc acaaccccta 5100 ctcctcaagg gatcatcatc caagacgaag accaccatca aggtgccaac cggcacgagg 5160 atccttccac ctagacccaa tgagagggtc gttggagtca agaccaaccg gagcggcgag 5220 atcagcagcg ttcgctacac tacggaggag gaaaggcctt actttgaagg gattagagca 5280 gccaaagtcc gtttcatccc tccaaaggca gccccgaagc acgctctcaa tgcttttgag 5340 acacctccca agcgtcgcaa gactataatg gatattgatg aggacgttcg caggctagac 5400 agagttatca tagacctcca gtcctcgatt aattccctca ctaggcagct ctctaaccac 5460 aacaccgtta tactaggcct taggcaggat cttgccagtg ccaacaagaa gattaaggaa 5520 ttagagcgcc gctaagttat ctagattaga ccttgaggca atgcatctta gtcatctatc 5580 tttaaattcg gtttaggttt actattatca tcagtttgct atcagtttgc tactagtctt 5640 ttgtaataaa tgcctcaaga ttaataaaga gtattattat tattattatg tcttgtgtgt 5700 ctctacttta tttttgtgca agaaagcaga aaacaagtat gggggagatc cctcgacatg 5760 ccaaacacac tccgactaca ccactccacg attcaggtac acactctgca cactttactt 5820 tacacataca catatcttgg attatgcaga atactgtttc cgacatgata aattaaaaag 5880 attaaaatat ttctaatcat gattaatctc amtctgtgat atttcctgaa aacttgcaat 5940 tattataaaa tcattttaaa accctgtgtt acttaagtca gtatggaatg tgagatggta 6000 gagtatgagt ttcttattct tgatatcatt gtcgcttgga gaatttattt caaaatcttc 6060 aaaattctag ctaccatcct cagtgtttta tatgcctgat aaaactgaaa atattaatta 6120 tgattataaa agctatctac tctgtattga gtttgttcaa aatgagttag acccttgttg 6180 agagatttat catgctccta agatcaagac atttattcag aaagattcac tcttccgaag 6240 tattattgca ttagaggcat gggctatgca aaaataaaga tatttcgagg aaataaaaag 6300 gagcaagtgc tcgacaacct cgcagaaaaa atggacaagt gtccggcagt agaattaggg 6360 gtacctcggt atccacttaa aaaagagaga gaagaaaaaa aaatgatagc ccatggtccc 6420 tctaataagc aatatgccag caagagttga caaagatttt aatttccaaa gtctttgatc 6480 taagagtatg acattcccct cctcggatcc cgttttgatc aggcaataaa tgcaaagtaa 6540 gtatgcttga gaatttttgc aaattaaaac agcctcagtg agatatataa aagataatga 6600 gtgatctgag agaacctatg aggataaaaa ggtatgctaa ctttctttca aaaatataca 6660 aaaactccaa gtgacaggat tgagaagaaa ggatctttac tcttaaccat atacttccct 6720 gactacggta cacagtggaa ttttaacacc ctgcagttat gaaaagaatg ttttaaaatg 6780 ttttacccca gatattgttc ttaaccatcc ttttctcgag gacgagtaaa agcctaagta 6840 tgggggtatt 6850 // ID CINFUL1_ZM_LTR repbase; DNA; GRAS; 628 BP. XX AC AF448416; XX DT 08-NOV-2002 (Rel. 4.3, Created) DT 08-NOV-2002 (Rel. 4.3, Last updated, Version 1) XX DE Zea mays retrotransposon CINFUL1_ZM_LTR, long terminal repeat. XX KW Long terminal repeat; retrotransposon; CINFUL1_ZM_LTR. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-628 RA Fu H. and Dooner K.H.; RT "Intraspecific violation of genetic colinearity and its RT implications in maize."; RL Proc. Natl. Acad. Sci. U.S.A 99(14), 9573-9578 (2002). XX DR Genbank; AF448416; Positions 20959 21586. XX SQ Sequence 628 BP; 209 A; 123 C; 115 G; 181 T; 0 other; tgttggggac ttgctctcaa atgctatgga ttaagaacaa ggcaacataa aatgttaaat 60 attaatgccc ttcgtccgct gaagcattat ttccccaagg atttaatgaa cttcggacga 120 agatcatgag cagaatatta cgaaggttat accttcgtaa ttaaaattac aaagttaata 180 caaagtaata tgcaatgtga aatattaaag atgaatatat cgaaaataag tgacattatt 240 cacatatctt atcatatgaa tttaagatgc ttgaacataa tgttttatga acatttatac 300 ctctgccttg acaaataata attcccgatt gaagcgtttg caattacagg aatgcgtgaa 360 cagtaaagga atattgttca ctatttatag gcacaggaca cagcctgtga agaattacaa 420 tcatgcccct cataaaagtt tacaacaatg actcagaccc ctatggacta aaaggtcatt 480 ctatctttaa gtcggttcga cccttcatct tcggatatgc cgtaataccg aagcttcatg 540 aatggtgcct tcggcgtcac gtacgagcag cttcagccga agctgtctct ttctgcagga 600 ccttcggcga cgaagcatgg tcccaaca 628 // ID Gypsy49-ZM_LTR repbase; DNA; GRAS; 422 BP. XX AC AC206838; XX DT 09-MAR-2008 (Rel. 13.03, Created) DT 09-MAR-2008 (Rel. 13.03, Last updated, Version 1) XX DE LTR retrotransposon from maize: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy49-ZM; KW Gypsy49-ZM_LTR; Gypsy49-ZM_I. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-422 RA Kohany O. and Jurka J.; RT "LTR retrotransposons from maize."; RL Repbase Reports 8(3), 312-312 (2008). XX DR Genome; AC206838; Positions 92965 92544. XX CC This sequence was derived from sequence data generated by The CC Maize Genome Sequencing Project. XX SQ Sequence 422 BP; 112 A; 104 C; 112 G; 94 T; 0 other; tgtcatgtac agccagccct acgtcaggca acggcgcgcc cgggatgtgc ggcgtgcgca 60 tgagcgagcc caggaggcaa cagccgccgg ctctagtgga tagggtagaa actaaataag 120 tttgtttgca tgcctagaat tatggataga aactagataa gtttgtttgc atgcctagaa 180 ttaagggttg tttgcatgcc taaaattagg gagcagttag ctccatgcgg ttagtcctag 240 gggcctatat attcctgtaa ccagacctga gttgggaatt aagaaagatc attatcctaa 300 tctctctctc tctcaactaa gccaacggca gaggggcata acctcgccga agaagacgac 360 ggaccgcggc tacgatctcc gtagccgagg gccacctacc ctagacacta aggcccttga 420 ca 422 // ID Gypsy52-ZM_LTR repbase; DNA; GRAS; 287 BP. XX AC AC196164; XX DT 09-MAR-2008 (Rel. 13.03, Created) DT 09-MAR-2008 (Rel. 13.03, Last updated, Version 1) XX DE LTR retrotransposon from maize: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy52-ZM; KW Gypsy52-ZM_LTR; Gypsy52-ZM_I. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-287 RA Kohany O. and Jurka J.; RT "LTR retrotransposons from maize."; RL Repbase Reports 8(3), 318-318 (2008). XX DR Genome; AC196164; Positions 20336 20622. XX SQ Sequence 287 BP; 66 A; 78 C; 75 G; 68 T; 0 other; tgtcagcagc agtctagggg agacgctaga cgaggcagcc gtcgcggaag agcggcgatg 60 tcccagcaag gagcagctcg catatccgag ccaaggggtt atgtaaacga gtgggccatg 120 tgttgggtcg tagggtgaag ggtatttgag tctgtattct gtatgaactg gtgatcaaag 180 aaatagaata ccagaaaagc cttcgtgctc ccaccgtctt cccaacttct ctaactcttt 240 ccccttcctc acgccattcc ctgccttctc cttccacgtc gctaaca 287 // ID CACTA_LP repbase; DNA; GRAS; 12483 BP. XX AC AY089999; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Lolium perenne cacta-like DNA transposon CACTA_LP. XX KW DNA transposon; Transposable Element; cacta-like; CACTA_LP. XX OS Lolium perenne OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Poeae; Loliinae; Lolium. XX RN [1] RP 1-12483 RA Langdon T.; RT "Direct submission."; RL Direct Submission to Genbank (13-MAR-2002). XX DR Genbank; AY089999; Positions 1 12483. XX SQ Sequence 12483 BP; 3175 A; 3079 C; 3214 G; 3011 T; 4 other; cactactagg aaaaggctag ccataagatt gacataagtg gcgcaccatg aaggccgtgc 60 gccactacta cttagcagtg gcgcaccaca aaatggtggg ccactgttac aaatgtagta 120 gcggcgcacc ttttttatgg tgcgccatta ttaaatgctg gcagggggcc agctcctacc 180 ccaacctagc agtggcgcat gtcgaatggg tgcgccactg ctattttgct tacctatggc 240 gcatggcgca gtggtgcgcc actgctagga ggtggccagg gcccctttag agatgagggc 300 tttagcaatg gtgcactgcc gtggtgcgcc actactagct atggcgcacc accaacatgg 360 tgcgccactg ctaagttggg caggggcgtg ggttgcaggt agcaggtgag cagtggcgca 420 ccatgaagta gtgcgccatt gctatgtcac cgtagcagtg gcgcacggat acgtggtgcg 480 ccactgctaa cctgggacca tttcctactt ttccccctcc actcacatgc atgtgccacc 540 cactttcccc aaacactctt ccaccaccac ctcccattaa atctggatct ggtcgtgttg 600 ctcctcctcc ccaccttatt ttgacctctt ctcattcacc caaattaagt ggtaaactta 660 attttcttgg taggtaagta agggtgaaac tttctatggc tcaatanaca tactcaatct 720 caattttttc ctcatccaac actntcggtc tgsccgtatc ggtaactttg ttggttttat 780 gctttgtgtg tgactagtta cgatcatctt gacacacgtg tgtggcatat atgttatgcg 840 aaagctccgc atgtgttgtg catgcgcgaa gcgtcacatg catatatatg tgtgttgtat 900 atgcgaagcc tccacatgca tgtgttgtat atgcgaagcc tccacacatg tgttgcatat 960 gtttttgttt gcagggatta gaaatgtgat ggagttgcca atattttgcc gaaacgttga 1020 ttcatttccg ttttggtgaa taatgggcat actacgcata tacatatgtc ctatttttag 1080 ggaaggtcat gccaaaattt tcttttggta tactaagata tccattttct ctatacccgc 1140 aggcgaccat ggtccgcatg atgagcgaag gcgttgtggc taggtttttg aaagccgcga 1200 cggccgagat gattaaaaat aaccaaaagg agataagatg tccgtgtcga agatgcaagc 1260 tgacgagcct tatggaccct aaagccgata tggtgcggga ccaccttctc atgcgtggtt 1320 tcatggatgg ctatcggtgg gaaggcgacg aagatgatta tgaatttgtc catgggattt 1380 caacaagaaa taaggaagga ggtgagcacc atgtagaaga tcccggacat gatcaggatg 1440 tagaagatcc cggacatgat caggatgtag aagatcccgg agatgatcat gatcacaatg 1500 taggagatcc tggacctgat gacgaggaag atcaagatgg aggtcatcat gacgatcatg 1560 aagatgaaga cgatggacca tcgtcgatgg actgggtgca ggacccttat cttcaagagc 1620 tgcttctcaa gcagacgagt aacgcaagag ctgcagcccg agagaaagcc aagattgatc 1680 aactggaggt agacgcggtt actcattgta tgaaggatgc aggtcggagg atacccgcct 1740 gaaagtaacg ctcatggctc tggagatgaa ggtaaagcac aaaatgaccg acacatcctt 1800 caacgacaac atgtcattct ggcacgacgt cttcccaaag gtaacacgtg tccgactagt 1860 atcgaggagg ccaagaaaat cgtgtgtcct ctggatttac cgcatgtgaa ataccatgtg 1920 tgcttgaacg attgcatcat ttatcggaac gagcacgcgg agtctaccat atgcccggag 1980 tgcagcgtca gaaggtacaa gatggggaag aaatctcctc agaaggtgat gtggtacttt 2040 ccgatcactc ctcgtctgca gcggtatttt cgcggatcct aagcaagcaa agctaatgcg 2100 ctggcacgcg gagatgagga agggagaaga cgacgcagat gagccagaca aaaataaaaa 2160 ggacaagatg ttgacacacc cttcggacgc tagccagtgg aatgcgttga accttgagta 2220 cccagaattt ggggacaatc ctaggaacat aaggctgggc gcgagcaccg atggagtcaa 2280 tccgtttggc agccagagca gcacgcatag cacctggccc atgtttgtgt ggatgtacaa 2340 cctcccccct ggttgtgcat gaagaggaag tacattcaaa tgagtatgct aattgaaggg 2400 ccgaaacaac catggaacga catcaatctg tatatggggc ttctgaaaga ggagctagcc 2460 acgctatggg acgcgcctgc caacacgtgg gacgccgccg cggaagaata tttccctatg 2520 agagccgcac tgctcacgac ggtgcacgac tttctcggtt acggatatgt cgcggggcag 2580 gtggtccacg gattcaatgc atgcgtcagg tgcatggacg acacaacata ccgccagcta 2640 gatagagatc ccgggtcctc gaaaacggtg ttcatgggac atccaggtgg cttcgcgaca 2700 ataacctgtg gagaaaacgc aaggatctgt tcgatagtca agacgaaccc cgaagacgga 2760 cacatacgag aagcggcgag caaatagacg agctattgaa aaattggaaa gagtgcccac 2820 cgccgggaaa gaagcgaaag gcgccggagc cgctgcttaa ggtatggaag acgaggtctg 2880 ttttctggga cttgccgtac tggaagatcc tccgtgtgcc tcacagcctt gatgtcatgc 2940 acatcacgaa gaacgtgtgc gagagtctgc ttggtaccct cctcaacatg ccanagaaga 3000 cctaagatga gccgaaagca aggtacgact tgcaatcaat tgggatcagg gaggagcttc 3060 acgcgggacg ccctaatgat gatgatgatg atgatgatga tgatgatgat gatgacgatg 3120 acgatgatga ggcggaggac acgcaaagtc gtcgcaaggg caaaaaggcc aaaaacatag 3180 aatattactg cccccccgcg tgcttcactc taagtcagaa ggagatcgag cagtttttcg 3240 actgtctcgt aggagtaaaa cttccttacg gttacgcggg gaagataagc aggtacctag 3300 acaaagcgaa gcagaggttc agcgggatga agtctcacga ctgtcacgtg ctgatgacgc 3360 agatacttcc ggttgcaatc cgtgggatca tggacgcgca cgtccgtgaa acgctttttg 3420 gcctatgcaa ctttttcgac gtcatctctc ggaagtctgt tggcgtgagg caacttagaa 3480 ggctatagga agagatcatg gtgatactgt gcgagcttga gatgtacttc ccgcccgcat 3540 tcttcgatgt tatggtgcat ctgctggtac acatcgtgga ggatatcatc caactggggc 3600 cgacgttcct acacagcatg atgccgttcg aaaggatgaa tggtgtcatc aaagggtacg 3660 ttcgcaacag ggcacgtcca gacggaagca tagccaaggg ctttctgacc gaagggtgca 3720 tctccttctg cacgagttat ctagaaatcg agaaccccat tggcctgccc gtaaacaggc 3780 atctcgggga gctcgctgga tggggtcacc gcgagggtag ccgcgaaatg catgtcgact 3840 tcaagggtcg aatcgccgac tttgaaagag caaacctagt cgcgctacaa cacatagacg 3900 tggtcgatcc ttgggtggta gagcacaaaa ccttatcgca aagacgtaca gtgatcaggg 3960 ccaccagagg acggacggag atataatcaa agagcacaac tcaaccttca cgcggtggtt 4020 caaggacaag atggtgacgt accctataga cgaggattct tctgcggaag aaaaactcat 4080 attcgccttg tcacagggcg ccgaacacaa cctgatgaca tttcaggcgt acgatatcaa 4140 cggctacaca ttctacaccg aggaaaagga catgaagagc gattatcaga actccggggt 4200 aacgatggag tcctacactg gtgacgtcca gcagagatac tatggaaaga tcgaggagat 4260 ctgggagctg agctacgccg gagagaatgt gccgatgttc catgtcaggt gggccaagaa 4320 catcgtaaaa gaagaccgac atttcaccac catggttata cccgaagcca aatctaagac 4380 agcgggcgca aaggtcaccg cgaaatatga gccatgggta ctagcttccc aagtggacca 4440 atgcttcttc attaccgacc cgcaaaagct cagccgtgtt gtcgtgagga gaggcaaaag 4500 gaacatcatc ggaatggatg gagccgccaa cgagctagac tttgaccagt aggcgatccg 4560 aagatggaag atgacgacga cgatgatgaa gaaccataca caacaagaag aagcaggacc 4620 accctaccta aaggccgtcc attcaagaga agaagtctag gagttccggg gctaaattat 4680 tcaaccgcga gaaagaaggg caagaagatt gtgaaaagat aattatgtat cattttcttg 4740 tatgaataat ggatgtcata ttgttaatct acacattgta ccgatcaaaa tagacatata 4800 atttatattt tcggatactt attagattct atagtattta tgcctttaaa aaaggtgtat 4860 taagctattt atctcatggt taaataaatt ttataaaaaa gggaaaaaat tggggccgcc 4920 agggttcgaa cctgggcggc caggtttggc aacccaacta ggggacgaag ccagtgcgat 4980 actaatcaga ttctgtcaaa ccatggttcg ttttttattt gacccaaact taaagtggca 5040 gtggcgcacc cctagaggtg cgccattgct aagcatctct atggcgcacc ccctagcagt 5100 gcgccattgc ttaggggggg ggggtcggta gggacttagc caaatcccga ccatcttctt 5160 ctccccatcc ccattcccca ttccccaccg gcgcctcgat ctcgatctca ctggctcccc 5220 ctcttcgatg ccacctccca ccggcgatgc cctgtccgac gccacctccc accagcgatg 5280 ccctgtccga cgccacatcc caccagcggc cgccctcccc cgattcacct cggaccccgg 5340 cgacgcgcgc agaccccagt gaccacagac cccggcggcg cgcgcagacc ccggcgacgc 5400 gcgcagacct cgtcgccaca gagaaggttc ttcctccccg ccatctgcac ccgacactca 5460 tctctctctt cccttcctct ccaaccgcgg cgccacccat cgcacaggta attgctcctc 5520 ctcctcctcc gcccccaatt cttctccggt cgtctctgaa tcgcagatag ggcttgcagc 5580 ttgctcgaat tagaacgcat actggtgctc aaatcatcga atgttgtagc taggttgtgt 5640 ttatcgttgg atctctcctc tcggattcat ggggccgtcg tatggcggtg tgtccaccag 5700 ccatgaatgc actcgtgggc ggcaaatgga tgccctgaat cgccaccttt tgatccacac 5760 cgaatgaatc aattcttctc caatgtaata tggaaatggg gtaaataagg ggggaactgg 5820 atgcccctgt tactgtcatc cacaatatgt tcgatcatac tgcatcattt aagggcccgt 5880 gggcggtatt tgtttactcc tatagatgtc tatgcaaatt taagagcaga tattgcctaa 5940 tatatggagg ctattgattg gtgtctacct gttgcttgct aatgttgttc tggttcctag 6000 atgttgcttg ctcctgctac actagctatt gcatgctact ggtatcttgt tgctgcttct 6060 agttgctatt gttagatgct aaaaagaaaa ggttgcttgc tgacatctac tgcatataat 6120 ttaggtttag gtggcagtag cttatagctt gcttgctgct gctatgtgct tacaatttaa 6180 agcagttagt ttttttagct tactggatga aagcttgatg ttcttgctgc atatgtgtat 6240 catttagttc atagcataca atttgagatt tttaaacctg ggtaccttac tctgtcgaaa 6300 gcatacaagt gtcattgagc ccatgttgat gatgttgttc atccatgtgc ttgctagctt 6360 ggtactgctg ctatgtgctt gctagcttgc tcctgctagt tgctatgtgc ttgctagcta 6420 gcttgctagt gttgctgcta tgtgcttgct agcttgctac tgctagttga tccatctact 6480 gacatctact gcatataatt tagatgctaa aagtttccta gtcatagagc aaaagaaaag 6540 gttgctaggt tgcttgctgc tgccgctagg ttgttagttg ctaggtactg aatcttactg 6600 agatttggtt gtttgaaaat ttggttcata cacgctaatt tagttctaac tgttgatgct 6660 cacagtgttc attttgatgt ttatagcact agtcgctagc tgttgctggt gctgctagct 6720 gctgctgctg tgatgtgatt cccctgtcgt gcacctatgg tgtatttttg tgtcatattc 6780 ttgtgcaggg atcgatagag ttgcccatta tcgccgaaat gttgattcat ttccgtttcg 6840 gcgaaaatgg ggcactcata tgtccataaa ttagcatagg tcatgcccaa tttttccgtg 6900 aaatcttgcg ctaactttat gcattttttc ctacttagtt cgaacatggc caacaacaaa 6960 gaggccggcg gcagcggcag caagccattc tggatgctaa ccgatgaaat ggaggtgatg 7020 gagtcacaac ctcgccgcga cggcggcggg gatgatggca ccgatccaga gtaccgagcg 7080 gacgatgccg ccgacgatga caccactgat ggtgccggca aggatgacac cacggatggt 7140 gccggcgagg atgacaccgg caaaccgaag aagctacgga gggagcatct cccgaatgtg 7200 ctcagcaccg tgaagcaggc attcaccaaa gtgaacgcca gtgggcatcc aacgacgccc 7260 cctgagttag tcaatgggta cgcaacccaa ctcgggtgca tcctccggag cacggtctcg 7320 atcaacactg agaacctcag gcatcctgac caagcgaatt tgcgcaccct cctcttcaag 7380 aagctgcaca aacgatacga gttcccggtg gactgctcag aaaagcgtct catgcagaac 7440 aaagtgcaca atgccgccct cacgaagatg agcaccgccc tcgctagttg gaggaaccga 7500 gtgaagaaaa tgattaatag tggtgagagt tacgagaaga tcaaggagtc aaatccctcg 7560 atcaccgagc aagactacgt tgatttcaag atcaagtgcg agagcgactc aacgtcggat 7620 tctagtcagt gggggaagga catgcgaaaa ctgaacttag gaacccacaa acttggtcct 7680 ggcggtttta gggtggcgca accgaaatgg gacgccgcgg atgaggagcg tgtgaagaac 7740 ggcctcgagc ccctcttctc gcaatacaaa aacaagcaaa ccaggaactt tctcctggcc 7800 cggtaccgta ttgacccgaa aacaaaggag ctcaccacca ctccggaggt gaagcagttt 7860 gaggctcttc tggtaaggaa tgcacccgct taattagttc ctttatggtt gcattcttat 7920 tgatgaatcc aaatttctaa atggttcatg catgttcctc ctgtaggcta aggaggttgc 7980 tgcgaaaagt gaaaaggaag ctagtagcgg cgcagggtcc acgagctcct cgcagtgtgc 8040 cccttgggac aaccctttaa atagggcgtt gaatgcccac aagaagaggc atccattgag 8100 taagccgacg tcggctggtc gtgtggtcgg cgaaggatgc tctatgaaat ggtcagaata 8160 ctataagtcg gggaaaaagg agaaaaaggc caccatcgat gagaaggagg tcgcacatct 8220 caaggcacac gttgcgcaga tcccgacatt ggtcgatgag caagtgcggc aacaagtgca 8280 tcatatcgtg gagacccaac agaggatgca acgacagcaa gtggaggacc aagtgggcat 8340 gatgcttagc tccatcatcc ctaccttggt tgccggtcta gacgcgtggt ataggggagg 8400 aaaaggggcc tcccccggtt cccagtttca tgggcagcaa ctcccacaac gtggagccat 8460 cggtgagtcc gcaggcggca gcaatggtgt ctccggtggc gccaacattg gtggctcccg 8520 cggtgccaac cttggtggct cccgcggcgc cgaccttggt gtctcccgcg gcgccaacct 8580 tggtgtctcc cgcggcgcca tttcttcagc tcaatgcacc cgtcgctgcg gataatacgc 8640 cgcccggcac cgcaccaaca agcggccact ccatcagttg cacgcccgcc gccggcggtg 8700 cctcgacctt agccgagctg gacgccatca cggtaaccaa ccctcggcca atgacttcca 8760 tatccttgcc tttgactagc tagccatccc taacgcccta catgtttccc gcagagctct 8820 gccgtcgatg tcccatgcac tctcctgcag tttgtgaacg gcgagttgat cgatgttgcc 8880 aaggccaaaa ttgttcaacc gagcaaccgt cagttacacg gtagacccat gcaacccgac 8940 gtgtatagga ttcaactggt tcgggtgctt agtggctatg acgacgtgct acctcccttt 9000 caaccccatg gtgccgacga agatgaggtc cttaccctcc agcattgctt caattggtcc 9060 atggtttggc caaagagcca gattcgtttg ggggcgaggg acaccacccc acagacagca 9120 cccccagccg tgccggcgcc aagccatggc aagaccaccc caacggtgcc gccatcagct 9180 gatgaggaca tgcatatggc acaggatccg aacaatggtc cggacgagga cagtacgttt 9240 gccaaccttg actgcaactt cgattttggg gtggactacg atctcaatag ccaaccctct 9300 caagctgccg ccgaggggaa aacctattgc aacaagcggc gcctattatg ttctcaggag 9360 acgcctccag ctgctgactt caccgagact cagccgatag ccgaggtgag aagtgttacc 9420 agtcctaaca cactgaagaa ggcttgcgaa gaggagaatg cagtcccagt aaatacgaag 9480 ccgaagggac ggaaaagaaa gaagaaggac gacaagtctg ccagccagcc ggcacctatc 9540 cgtgctcagg acgggccacc agtgcccaag aatatcgagt tgagggtgca tgtgtcgggt 9600 gagcggatgc taattcaaag attgtacgat gctgcacccg gtcctatgcg atctctggtt 9660 gacggtattc aatttatgga ggagcggcgt atcagggaga aagatcatgg atacccagtg 9720 tatgttgcca aggtgccctc gggccatggc tttgtcgata gtggcttcgt ggagaagatc 9780 ttcctgcggt atgatgacat cttcgccatg ctgaacagtt atccgctgca ctacaccttc 9840 attcgcctat actcgctcag caaggcgatg cggatcatta gacacaacat cccggacatc 9900 gcgatagccg accccttcta catgcgtgcc gtccacttgg ccaccgccgg agaccgggca 9960 gtcgcgagtg gatacctcaa agacttcttt ctagcgaacc agaagaagtg taacctcttc 10020 ctgcctgtat ttcatgagta agtcacccct caccgtaccg gtcttaactc gtgatttttt 10080 tagatttcaa tcgtcatgtt cttaaacatt atgtgttcta cgcagagaca aaacctgcac 10140 actcatctcc ataaccccga aacattccgt ggccacatac ctcgatgcgg atggtaagtc 10200 aaccacggac tacacgaatg tcaaggccgt acttgatgat gctctcaatg gctacgtcaa 10260 agcgaaaggc cacatgcaga ggccaaatgt taggtacggg aagcatgtgt tcaagcacca 10320 aacaaagttt ccctgcgtca agaagccgcc ttctagtaac aaggatgcct actacaccct 10380 ctatcacatg ggtaagttca tacgggacca gcagcagctt acgctacctg agcatctcaa 10440 agactgggcc aacaaatttt cgcgggtccc tgacgacggc atcaagcaag acttcttccg 10500 catccaagta gagttttgtg aaatcatcca tcaagatgtc gttagaagcg cgggggagtt 10560 ctacgccggc tatcagccgt cgaacagtga catagacaca atgctccaaa tgcagggtga 10620 cgactaccac tcatggatgt gcttgaagaa aggcggcggt tttatccacg ctccgagaaa 10680 gtcttgatgt gcgagcctag ttatgtagtt gtgaactaaa gacgagcttc tgttgtaata 10740 aactttatcc agcactttac ttgcatgtct gtttaattac tagttcggct atgtttgtga 10800 acttatatat atggctctgt cgttttccgc acttgatttg gtcgttaatt ttgtttgcat 10860 atgccgatga ttagaatggt tggtcacttg tacactcggg ggtggagcaa gcgagcctgg 10920 tgtgatggca caaatatcca tgtcttgtgc atcctacctg gcctcgctta ctccatccct 10980 gaatgttaaa atttgttttg accaacaatg tatgaggccc tcgtcattcc atttgctttg 11040 gtttttcaga atgccgatga ttagaatggt tggtcaccta tacactccgt gaaggcatca 11100 gcgagcctgg tttgatggca caaatatcaa tctcttgtgc atcctacctg gtctcgctga 11160 ctccttcacg gaatgttaat atttgttttg accaacaatg tatgaggcat atgctattta 11220 gttgatacca cttggctctt tcttccattt tagtgccgat gattagaatg ttcggtcaac 11280 tgtacacttg ggggaggggt cagtgaactt ggtgcgatga cacaagtatc aatctcttgt 11340 gcatcctact tggtttcact gaccccttct ctaaatgtta atacttgttc cgaccaacaa 11400 tgtatgaggc attcctttta gttcatacta cttggatcgt ttttgagttt gctcttattc 11460 gttgcaaaca tctatgagcg tgcactaatg tttctttggc ttgttcatat atgtgcagat 11520 atgacgtggt atgtcgtgta caagtgcaag gttcccggag tctacaacga ctgggaggag 11580 tgtcggagat aggttcaccg ttttagtggt aacagctaca aagggtacac cactagagcg 11640 gagaccgaag acagatacgc acgccatgtg gcggtagaga ggacggagcg gaggaggaac 11700 cagatgaaga ccactttcat cgggacggtg ctagtagtga ctctaactct cttctatgtg 11760 atggtagttc agatgatcga ccttgtgtaa ccactatctc atttgtgaat ttgtaactca 11820 gtaacttgca ttgtaacctc gtaacttctc taatgtgaaa tcttttgaat catgtggggc 11880 taatgtgaag aactatgtat ggataagcta tgctgttgtt tatatggtgt tatatatcat 11940 gtattgtgct attgtactgt gatataaaac ctgtataaat acctgccagg atacaaaaaa 12000 aatcgaaatc gtagcagtgg cgcactagtg gcccatctgt ggcgcacgtc cactaagtag 12060 cagtggcgca ctgctctgga tccagtggcg cactgccctg tgatcccctc cgagactagc 12120 agtggcacac caggaacctc agcagtggtg cacgtcctgg agatagcagt ggcgcacgtc 12180 cacacgacag cagtggcgca ccacctcgct gaaacaagcg gcgcacgcaa aacggtagca 12240 gtggcgcacc tcctctacag agtggtggcg cactgccact gaccaacagt ggcgcaccac 12300 tttggagtaa tagtggcgca ctgctggaca tgtcaatggc gcaccatgca atggcgccac 12360 tggtatccat gctagtagtg gcgcacccct agtgcgccac tactaggagt tagcagtggc 12420 accactagtg cgccactgaa ggctatatgt ggtgcgctac tgattgcctt tttcctagta 12480 gtg 12483 // ID TZ86L repbase; DNA; GRAS; 250 BP. XX AC M10175; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 25-MAR-1997 (Rel. 2.02, Last updated, Version 2) XX DE Maize sucrose synthetase gene mutant (Sh-5586 allele), containing DE transposon Tz86, 3' end of Tz86. XX KW TZ86L; sucrose synthetase; transposon. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-250 RA Dellaporta L.S., Chomet S.P., Mottinger P.J., Wood A.J., Yu M.S. RA and Hicks B.J.; RT "Endogenous transposable elements associated with virus infection RT in maize."; RL Cold Spring Harb. Symp. Quant. Biol 49, 321-328 (1984). XX DR GenBank; M10175; Positions 1 250. XX SQ Sequence 250 BP; 69 A; 57 C; 54 G; 70 T; 0 other; tcctggtatt ttttttaaaa atacatgtgc aaatatttga tgtcacattg atctgcaacg 60 aaatcgggta gaacgggcta cccgaacccg aacccgaatt ttttgggtac ccgaattttc 120 gggttttgct taaattgggt acatattcgg gtattgtttc tgaaaacccg aattgttaaa 180 agcccaaact acccgacccg aaaattcggg ctaacccgaa tgcccagcgt gaggctgatg 240 accctgaccg 250 // ID MIUSE1_TM repbase; DNA; GRAS; 7025 BP. XX AC AF459639; XX DT 16-OCT-2002 (Rel. 4.3, Created) DT 16-OCT-2002 (Rel. 4.3, Last updated, Version 1) XX DE Triticum monococcum non-LTR LINE retrotransposon, MIUSE1_TM. XX KW LINE; retrotransposon; non-LTR; complete element; TREP256; KW MIUSE_115G1-1; MIUSE1_TM. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RP 1-7025 RA SanMiguel P., Ramakrishna W., Bennetzen L.J., Busso C. RA and Dubcovsky J.; RT "Transposable elements, genes and recombination in a 215-kb RT contig from wheat chromosome 5A."; RL Unpublished. XX RN [2] RP 1-7025 RA Dubcovsky J.; RT "Direct Submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AF459639; Positions 151023 158039. XX SQ Sequence 7025 BP; 2070 A; 1671 C; 1583 G; 1701 T; 0 other; ttttttttga ctggtaactg tagggaaaac ccccacagca tgtcgaaact ttattagcaa 60 ggaaaagcta gtacaagtac aggagggatt acaaggggta atcaagctaa aatacaaaag 120 gaagaaaaga aaaaacagaa acaaggagcc tcaaggaggt agaaaagaga tccatttaag 180 gagatcatcc ttataagcag gcttaatcct atattgcatt agggcaatat catgtaggaa 240 agctgctctc catttattga atccagctct ctcatgccta aagaccttag catttctgac 300 gatccatata ttccagcaag ctacaaagac cacttcagtg aagaaaggtt tcctaaagct 360 ccttttggca ttgatggcca gctctgtcat cgaatcacct gatgaccaat caatttgcaa 420 atagttccaa accctgatac taaaattgca attgaaaaac atatgatctc ttgtttccct 480 agcctgcaaa gggcagagca cacagtttac tccatcctcc aaatgccaat gcctcctttc 540 taccatatct ttggtattta gcctgtccat aatgagcatc caagcaaaga cctttatttt 600 catagtgcaa gaggacttcc aaatccaagc tgttaggggg ttgaaggatt gtgccacaaa 660 cacatgagag taaaacagct tcggggagta gcccttggca gtgccattcc aaagccagat 720 atccttagac ccattgtctc tatcatgatt ttccaacaga gattggagaa taaccagctc 780 atcaaaagcc tgagcagaca aaggaagatg gaagtggtga tacatgtctt gggagtccaa 840 gaaatcctta acggatatcc agggatcttt gacatatgaa aaaagcctag ggaatctgaa 900 ttgaagctgt aatttctgat catcaagctt ccaattgtct gaccacatga gtgtagtgtc 960 cccttcattt atctgaaccc aagcacagtc cctgaagtta tgcaagacct tgcatatatc 1020 cttccaccag aaggagccac aatcagaagt accttggggt actctaccat gatagtaaga 1080 gtcccaaatt aatgacaccc aaggtatatc ctttttattg aggaagttat ttgcatgttt 1140 gagcagtagt gccacattct gaacacccag gtttagaata ccaagacctc ctttgttttt 1200 tggcctgcaa ataagttccc aagcagccat agactgagca ggttcagccc tgtttttcct 1260 ccaaaggcaa tgtctctgaa ttctttccaa ttgttttaga atgccagcag ggacagccaa 1320 actagaaaga aagaagatgg gcatagaaga cagcactgag ttcagaaact gtaatctctc 1380 tccctgattt agaaaagaag agctagctgt cattcttctt tccatgcagt ccaccagagg 1440 catgaagtcc accattttag gcctagtagt acctactggc aatccaagat atgtgaaagg 1500 cattttccca atttgacacc tgaaagcagt agctaaatct gtcatgactg cattgtctac 1560 attgatagga atgataaagg atttatgata attgacatct agcccagtag acacagagaa 1620 gacctgcaac atgtctttca aagcaagtaa ctgtaccttg tcagcaggca aaataatcaa 1680 ggtatcatca gcatattgaa tcacaggata gtcctggtca tgacaaggta ttgggagatg 1740 aagtatgcct cttctgaaca tgtcattaat tacagtctgc agtaggtcag ctgctaatac 1800 aaagagcaaa ggggaaactg ggccaccctg cctaaccccc tttttgcatt tgaatttcct 1860 accaggaaca ccattgagca gaacagatga tgtacctgta gacaaaagtt gtttcatcca 1920 aagaatccat ttttcattga aacccttatg tctcaagatt tggacaattg cctcatgctc 1980 cagggaatca aaggctttct caaaatccaa tttaagtatg acaattggcc tcttggactg 2040 atgacactga tgtaagtact caaaggtcca tccaatgcag tcatggatac ttctgctttt 2100 tataaatcca tactggttct tatggataca ttgcattatt acttcttgaa acctatttgc 2160 tgccattttg gagaggaact taagacccat gcctgttaaa gaaataggtc tgaaatcccc 2220 cacctcctca ggtgactgtt tcttgggcac caatgtgata tatgaatcat tgatgttctc 2280 tagatgagca gtaccatcat aaaaagcctg tgccggttca tagaaatctg gagagataat 2340 gtgccagcac cttttgaaga agagcccatt aaaaccatct ggacctgggg ctttatcaac 2400 tggcatatgt ttgacaatct tatccatttc ctctttctca aagggcttag taagaacatc 2460 taaaccctcc actggagcaa ttaaagagga gagatcaaag cccatgtgga taccccttga 2520 agagcccatt ctgtttttaa aacaattcca gataacaccc tccatttgag agtgatcaga 2580 aaccactgtg ccatcaggta gctttaagct agcaatagaa tttcttctat gcctctcagt 2640 agccatagca tgaaagaact tagtgttttc tccacccacc tttatatatc tgatggtaca 2700 tctctttttc caatagagcc attgaaggtg aagtaccttt tccacatgag ttttgaccac 2760 tttcctgaaa ttggattcat gcctgtacaa tggtctgagc tcctccagtt catctagtaa 2820 cagaatcgcc ttgttacatt tacagacaag cattttcagc ttggatatgc tcatctgcca 2880 tctcttgagg cacattctca gggatttgaa tttgtcagct attcgagctg tgatatgccc 2940 ctttctagaa gttctctgcc atgaagaatc cacacagtcc atgaaaccct caagttctaa 3000 ccaataattt tcaaatctaa aaatgttaga cttggggata gaagttttga ttgaaaccac 3060 acatggcaca tggtcagatg tagtttttgc caggggcctc accttagtca tgggatagtc 3120 agatatccaa tccatagaag tgaaaaacca gtctaactgt tcagggaggg gattatcctg 3180 catattagac caagtgtatg atctgccttt gatgggtaat tccaaaaggc ccaagtgccc 3240 tatgatctca ttaaagagaa acatgtcatt caggtcccct ccaggcaaat ttctgttatc 3300 ctgtgagcgc aaaaaattga aatccccaag gagtagccaa ttttcctcaa ctggaatatt 3360 gagatggtac aaccaattaa caaaattatc tctggcttct ccctgacaag gaccataaac 3420 agcaacaagg gtccacttct cattattttg tctagaaaca aactcaatca ctattgcaaa 3480 atgctggatt tccagtaagg acccatcaaa aacagaggag ttccaaacaa ctacgattcc 3540 accagaggcc cccaaagaag gagcgaaagc aaaactgtca aatcttttag gacaaaaacc 3600 tttaattgaa cgggagtcaa aagaagcaca tttagtttcc tgcaaacatg caattgcaca 3660 gtgactctca tcaatttttt gcctgacagc ccgttgccta ctttcagaat ttaaacccct 3720 gacattccag cacaagacat tccagctttt acaaagagaa ttcatagata aagaccataa 3780 acagttcccc aaagcacatg gcactcaatg ccatgtgtcc aaaagccaca ttagagtctg 3840 aactaacatt attacatatc caaagttctg aaaataacaa catgcaggga gcaaattttg 3900 gggcttgcca aacccatcag ttggaaagcg cactattcat tggaggcgtt gttggttgtg 3960 gcagtaggat ccaccataag tgcctcctca gtgagcagcg ctgcatcaat gcctaactcc 4020 ttgccaatgg cttgcagatg actgattgga gtaggaggag ggacaccttc agatgcagtg 4080 gtgctgggct cctcagcagc aatgggcttg gccctaggct tcttcttctt gggctgtaga 4140 accagctcat gaaaagtggg cttaaaccca tcgcgctggg ccgaacttct ggtgcatctt 4200 cgaacagacg tttcaaccag cggtgttggc gccatagttt tgcgaggcct ccttgatctt 4260 gcgcgcacct gtgaagtggg gaccacagca ggcgcagttt catccgcttc gtccacaaag 4320 agagctcttg ccacaggcct agccaggtcc ggctgtttcc atgtcaataa aggaagatcg 4380 tcaatctgga aagcaaggct ccatcttctc ttaactggcg acaaaggctt aggcattaaa 4440 ggttgcggta tctcaaacgt cactggtgca ttcagcaagt tctcaaaaga acgcctccat 4500 atcatttctg ggggcagagg aggcccgaaa ggaaccttaa tgacaggtga agcaagggcc 4560 agaacatcaa caacaagtgg gggttgataa accacgatcg cccaattgct ggtatcttcc 4620 acgtctgcgg caatgttctc cgatacactt cggtcaataa tagcaggagg ctcctggagc 4680 tgcacatctg aacttgactg ggtagaattt tgctgtgccg aagcatcaaa aaccatggac 4740 tcttggtcct ccacaactgg ttcctcagca ggctcctccc agttgcccca attgtcctat 4800 tgatcctggg ccggagcagg cggtggtggc acatcgttcc accccaaagc agggaacggg 4860 ggcaggacaa aaggtggcat ttcagggaat ggcacaccag gctgaggatg ggggttgcca 4920 ttgatgggca tccagtcctc atcttggggc atttgttcag caaagttggc ccccggaata 4980 tacaatggcg acgtccaaga cactctggca ccaccccatg ctgcatactc catgaacacc 5040 acgtcccggg gtaccagaat atcctccggg aaagaggcaa agaccaagga gcgcaccaga 5100 tatggatcct cactaatcca atgatgaaac ttcccaaaag tattaactgc tgcccggaga 5160 ccaatctcat tgcgaagatc tagtggaatc cccaaaaaca taagcaaacc ctgtctgaaa 5220 ccctgaacac ctctaaaaga ttcaccctca tcatgcttca tgaacctgac aaaacgatca 5280 ttacccaggg gctgaggcgg catctggagg agggaaaatc taacagcagc atcccgtagc 5340 tcaaaaagac ccaccgatct aatccagggt tgagcagacc gcaccaaaat cccatgggct 5400 tgcagccact gaacaacttc ctctctagca gccccaatct gatcaggagg ggggatgggc 5460 attacctcag ctagcatgaa ctcctcatgg cgacgcacaa ttggggtatg tggcgtaaca 5520 aaggtgcgcg gcacccgagc ctccccgcca tccacaacgt ggtgcccggc cggcacatag 5580 agcatggggt caaggtggaa gttggccatc ggaggggcac gctccgagct tgcagcaggc 5640 ggcgaggact ccggcagagg tggggtttca ggcggtgcag acgatggtgt tttggggcca 5700 gggctgatgg aacggggcga gagagttaat gcggaagtgc aagaggagtc caagtttggt 5760 aaaagttgcg tcagagagat attctcggtg gaagctgagg gatcctcgga agttgcaacg 5820 ttaccgggtt tcggtttcca aaccagaccc aagatctgtg caaaccggtg gtaatctctt 5880 gccacatgcc ctatccgcaa acaagagtta cagcgtgacc gagacgtgca cgccgaagca 5940 aaatggccct tgcgcaaaca tttctgacac gtcagaattt catccaccat tcctgaaact 6000 aggttatcaa actcagcttc cgcttgttga gaagagggaa tggtggaagg cccaggaggc 6060 aacaccggcc caacttgatc cgtggcacgt gtagatgatg gcccaacatg gggggacacg 6120 tccacattca aagtagcaag attcccgccc gagatagacg gcggccgagc cgcgtaagga 6180 gggaggtttc caaccgtacc aaaagatatg gctggagcag ttgacgtcca ccggagtacg 6240 accggcggcg ggggatgaat gaccaccctc tcatgctccg ggagagtgta ccccgcatct 6300 tcgatggttt gaatgcagtc ttgcatggct ggataacgat acccacggca agcaggataa 6360 ctctggaacg ttgagaaaga aagtttcttg gcttggccat gtgaagatct taccgaggat 6420 ttttgaggct tggaatgcat tgcaagcatg cccagtgcag ctcgacgttt agaaggactg 6480 acaagtatcc actctgcatc acattccaat ttccaaagct taaactcgcg gccccaattt 6540 ggacccccat taccccaaag atggaagtaa catttaaatt gatcacaaga gaaagaacga 6600 agcttcagca cgatcatggc aacctcctta caggaaactt gaaagccaaa aaccttatcc 6660 ttgagcggaa agaccataaa ctcaattgta gaacccccaa tggccgcctc aattgctgct 6720 gccacagaat cttcatgtaa acgaaaagta tgccgcccaa aagagattac catggtgaag 6780 aagcccgtgt catccatggg atgcaccgta aaaccagtag gttgaaaaac cttatccgca 6840 aaaaccaagc ccctggagaa atccaagcca agggtggatc caacatcaga acccatggag 6900 atgggtacta ggaggtagat ctcagggcgc cggagagatc tagtggagag aagtggaatt 6960 ttggtggcta ggagcggtga tcaccggaga tggtgacaat cgccgggggg tggggtggga 7020 gccct 7025 // ID AC9_ZM repbase; DNA; GRAS; 4810 BP. XX AC K01964; XX DT 11-NOV-1996 (Rel. 2.2, Created) DT 25-MAR-1997 (Rel. 3, Last updated, Version 2) XX DE Maize transposable element Activator (Ac9) from the waxy locus. XX KW Repetitive sequence; transposase; transposon; activator; ZMAC9; KW AC9_ZM. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-4810 RA Pohlman F.R., Fedoroff V.N. and Messing J.; RT "The nucleotide sequence of the maize controlling element RT Activator."; RL Cell 37, 635-643 (1984). XX RN [2] RP 1-4810 RA Pohlman F.R., Fedoroff V.N. and Messing J.; RT "Correction : The nucleotide sequence of the maize controlling RT element Activator."; RL Cell 39, 417-417 (1984). XX DR GenBank; K01964; Positions 1 4810. XX SQ Sequence 4810 BP; 1390 A; 1063 C; 1063 G; 1294 T; 0 other; ctgcaggcgg aggtcgggct cccggtggac cggaacatcc cgctggtggc gttcatcggc 60 aggctggaag agcagaaggg ccccgacgtc atggcggccg ccatcccgca gctcatggag 120 atagggatga aaacggtcgg taacggtcgg taaaatacct ctaccgtttt cattttcata 180 tttaacttgc gggacggaaa cgaaaacggg atataccggt aacgaaaacg aacgggataa 240 atacggtaat cgaaaaccga tacgatccgg tcgggttaaa gtcgaaatcg gacgggaacc 300 ggtatttttg ttcggtaaaa tcacacatga aaacatatat tcaaaactta aaaacaaata 360 taaaaaattg taaacacaag tcttaattaa acatagataa aatccatata aatctggagc 420 acacatagtt taatgtagca cataagtgat aagtcttggg ctcttggcta acataagaag 480 ccatataagt ctactagcac acatgacaca atataaagtt taaaacacat attcataatc 540 acttgctcac atctggatca cttagcatgc ataaactatt acaaccaagg ctcatctgtc 600 aacaaacata agacacattg ctcatggaga ggagccactt gctacatctt cattattctt 660 agaaaattct attgcgtctt catcctgtta atacacaaaa ataagtcagt tttggataaa 720 taaatacata tagaagaaca tgaattgata tgcagggagt ataaataaat acatatagga 780 gaacatgaat ctgtgaacta acacggctgg gagctaggca gctagcagct agcgcctaac 840 agctgggagc ctaacagcta gcagctagca gccaatcaaa acaaggcgac aaggcgcatg 900 cagtgagatc aaaaatctgt taatgccagc catgcaggga gtataacacg gctgggcagc 960 aaggcgcatg catcaaaaca aggcgacaga caacagccca tgcatcaaaa cagtagtgaa 1020 taatagcaaa ttaatagccc atgcacgaag taaataataa tctttaaata cctcatccat 1080 atgattctca tgatttgttg cagcagcaat aacagagtct agcacctcga gatcaccaat 1140 cattgttgga aaatatgtag caccttgaat gacacaaata tgcatcaata taagtaaaat 1200 aattgttgaa taactataaa ttggaacttc attataacat atatgcattc accttttcta 1260 gatgctgcta cccaatcttt tgtgcatatc aaagcttcaa caatctccga accaagacga 1320 ttgcggtaag gatcaacaac acgaccacca gcactgaacg cagactcaga agcaacagtt 1380 gacacttgta ttgctagcac atcccttgca atttgggtga gaataggata ttctgcaacc 1440 cttcccctcc accatgataa aatatcaaac tgaccactat gcttcaaaag gggttcagac 1500 atatatttat ccaattcatt tgactctact tgatcataat ccttcaactc atgcaaatag 1560 ttttgaaatt catcatcttc attttccatc aaggtatcat ccatactatc attagtagtt 1620 gtctttgtct ttggagctga aggactacaa ctagaataga attgatacaa ttttctaatg 1680 accctaacaa agtcatctac atgaactttg tatgaatcac catgaaattt tttcatatag 1740 aactcaatca atattttctt gtacctaggg tcaaggaagc atgctacagc tagtgcaata 1800 ttagacactt tccaatattt ctcaaacttt tcactcattg caacggccat tctcctaatg 1860 acaaattttt catgaacaca ccattggtca atcaaatcct ttatctcaca gaaacctttg 1920 taaaataaat ttgcagtgga atattgagta ccagatagga gttcagtgag atcaaaaaac 1980 ttcttcaaac acttaaaaag agttaatgcc atcttccact cctcggcttt aggacaaatt 2040 gcatcgtacc tacaataatt gacatttgat taattgagaa tttataatga tgacatgtac 2100 aacaattgag acaaacatac ctgcgaggat cacttgtttt aagccttatt agtgcaggct 2160 tataatataa ggcatccctc aacatcaaat aggttgaatt ccatctagtt gagacatcat 2220 atgagatccc tttagattta tccaagtcac attcactagc acacttcatt agttcttccc 2280 actgcaaagg agaagatttt acagcaagaa caatcgcttt gattttctca attgttcctg 2340 caattacagc caagccatcc tttgcaacca agttcagtat gtgacaagca cacctcacat 2400 gaaagaaagc accatcacaa actagatttg aatcagtgtc ctgcaaatcc tcaattatat 2460 cgtgcacagc tacttcattt gcactagcat tatccaaaga caaggcaaac aattttttct 2520 caatgttcca cttaaccatg attgcagtga aggtttgtga taacctttgg ccagtgtggc 2580 gcccttcaac atgaaaaaag ccaacaattc ttttttggag acaccaatca tcatcaatcc 2640 aatggatggt gacacacatg tatgacttat tttgacaaga tgtccacata tccatagttg 2700 tactgaagcg agactgaaca tcttttagtt ttccatacaa cttttctttt tcttccaaat 2760 acaaatccat gatatatttt ctagcagtga cacgggactt tattggaaag tgagggcgca 2820 gagacttaac aaactcaaca aagtactcat gttctacaat attgaaagga tattcatgca 2880 tgattattgc caaatgaagc ttctttaggc taaccacttc atcgtactta taaggctcaa 2940 tgagatttat gtctttgcca tgatcctttt cactttttag acacaactga cctttaacta 3000 aactatgtga tgttctcaag tgatttcgaa atccgcttgt tccatgatga ccctcagccc 3060 tatacttagc cttgcaatta ggaaagttgc aatgtcccca tacctgaacg tatttctttc 3120 catcgacctc cacttcaatt tccttcttgg tgaaatgctg ccatacatcc gatgtgcact 3180 tctttgccct cttctgtggt gcttcttctt cgggttcagg ttgtggctgt ggttgtggtt 3240 ctggttgtgg ttgtggttgt ggttgtggtt catgaacaat agccatatca tcttgactcg 3300 gatctgtagc tgtaccattt gcattactac tgcttacact ctgaataaaa tgcctctcgg 3360 cctcagctgt tgatgatgat ggtgatgtgc ggccacatcc atgcccacgc gcacgtgcac 3420 gtacattctg aatccgacta gaaggctcta gcttttcttt tcaaccctgt tataaacaga 3480 tttttcgtat tattctacag tcaatatgat gcttcccaat ctacaaccaa ttagtaatgc 3540 taatgctatt gctactgttt ttctaatata taccttgagc atatgcagag aatacggaat 3600 ttgttttgcg agtagaaggc gctcttgtgg tagacatcaa cttggccaat cttatggctg 3660 agcctgaggg aggattattt ccaaccggag gcgtcatctg aggaatggag tcgtagccgg 3720 ctagccgaag tggagagcag agccctggac agcaggtgtt cagcaatcag cttggtgctg 3780 tactgctgtg acttgtgagc acctggacgg ctggacagca atcagcaggt gttgcagagc 3840 ccctggacag cacacaaatg acacaacagc ttggtgcaat ggtgctgacg tgctgtactg 3900 ctaagtgctg tgagcctgtg agcagccgtg gagacaggga gaccgcggat ggccggatgg 3960 gcgagcgccg agcagtggag gtctggagga ccgctgaccg cagatggcgg atggcggatg 4020 ggcggaccgc ggatgggcga gcagtggagt ggaggtctgg gcggatgggc ggaccgcggc 4080 gcggatgggc gagtcgcgag cagtggagtg gagggcggac cgtggatggc ggcgtctgcg 4140 tccggcgtgc cgcgtcacgg ccgtcaccgc gtgtggtgcc tggtgcagcc cagcggccgg 4200 ccggctggga gacagggaga gtcggagaga gcaggcgaga gcgagacgcg cgtcggcgtc 4260 ggcgtgcggc tggcggcgtc cggactccgg cgtgggcgcg tggcggcgtg tgaatgtgtg 4320 atgctgttac tcgtgtggtg cctgccgcct gggagagagg cagagcagcg ttcgctaggt 4380 atttcttaca tgggctgggc ctcagtggtt atggatggga gttggagctg gccatattgc 4440 agtcatcccg aattagaaaa tacggtaacg aaacgggatc atcccgatta aaaacgggat 4500 cccggtgaaa cggtcgggaa actagctcta ccgtttccgt ttccgtttac cgttttgtat 4560 atcccgtttc cgttccgttt tcgtttttta cctcgggttc gaaatcgatc gggataaaac 4620 taacaaaatc ggttatacga taacggtcgg tacgggattt tcccatccta ctttcatccc 4680 tgcatggaga tggtggagga cgtgcagatc gttctgctgg tacgtgtgcg ccgcccgcca 4740 cccggctact acatgcgtgt atcgttctac tggaacatac gtgtgagcaa cgcgatggat 4800 aatgctgcag 4810 // ID PREM2_ZM_I repbase; DNA; GRAS; 6933 BP. XX AC AF090447; XX DT 08-NOV-2002 (Rel. 4.3, Created) DT 08-NOV-2002 (Rel. 4.3, Last updated, Version 1) XX DE Zea mays copia-type retrotransposon PREM2_ZM_I, internal region. XX KW LTR retrotransposon; COPIA superfamily; internal region; KW target site duplications; PREM2_ZM_I. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-6933 RA Song R., Llaca V. and Messing J.; RT "Direct Submission."; RL Direct Submission to Genbank (04-SEP-1998). XX RN [2] RP 1-6933 RA Llaca V., Lou A., Young S. and Messing J.; RT "Direct Submission."; RL Direct Submission to Genbank (10-NOV-1998). XX RN [3] RP 1-6933 RA Song R., Llaca V. and Messing J.; RT "Direct Submission."; RL Direct Submission to Genbank (12-APR-2001). XX RN [4] RP 1-6933 RA Song R., Llaca V. and Messing J.; RT "Direct Submission."; RL Direct Submission to Genbank (24-APR-2001). XX DR Genbank; AF090447; Positions 52002 58934. XX SQ Sequence 6933 BP; 1766 A; 1541 C; 1455 G; 2171 T; 0 other; aagatttgtg ttgggcaatt caaccaccaa aattatatag gaacaaggtg taagcctaat 60 tccctttcaa tctccccctt tttggtgatt gatgccaaca caaaccaaag caaatataga 120 agtgcataat tgaactagtt tgcataaaat aagtgcaaag gttgcttgga atttagccaa 180 tatgactact tacaagatat gcaaggaatg tttctttctt atattacatt ttggaccacg 240 tttgcaccac ttgttttgtt tttgcaaatt ctttttgtaa atccatttta aagatctttt 300 gcaaatagtc aaaggtacat gaataagagt ttgcaaagca ttttcaagat ttgaaattgt 360 ctccccctat ttcaaatgct tttcctttga ctaaacaaaa ctccccctaa aagagatcca 420 cctcttagtg ttcaagaggg ttttgatata ccatttttga aatactactt tctccccctt 480 ttgaacacaa taggatacca gatgataaag acttttggaa agcactaagt ttttgaattt 540 ggtggtggtg cggtcctttt gctttgggct catttctccc cctttttggc atgaatcgcc 600 aaaaacggaa tcattagagc cctctgaagt gcaatcttcc cctttggtca taaataagtg 660 agttaagatt ataccaaaga cgaagtcctc ttgcgtttga gcttttactc tctcccccaa 720 ggatgaagtc cttttctttg atgctcattt ctcccccaaa gaagagagag ttgctcggag 780 tggtggcgaa gtatgagttg cggagtagaa gcctttgtct tcgccgaaga ctccaattcc 840 ctttcaatat acctatgact tggtttgaaa tagacttgaa aacacattag tcatagcata 900 taaaagagat atgatcaaag gtattcaaaa gagctatgtg tgcaagctta gcaaaagaaa 960 tttctagaat caagaatatt gagctcatgc ctaagtctgg taaaagattg ttcatcaagt 1020 ggcttggtaa agatatcggc taattgatct ttagtattaa tgtaagaaat ctcgatatcc 1080 cccttttgtt ggtgatccct aagaaaatga taccgaatgg ctatgtgctt agtgcgacta 1140 tgctcgacgg gattgtcggc cattttgatt gcactctcat tatcacatag caaagggact 1200 ttggttaatt tgtaaccgta gtccagcagg gtttgcctca tccaaagcaa ttgcgcgcaa 1260 caatgtcctg cggcaatgta ctcggcttcg gcggtggaaa gagcgaccga attttgcttc 1320 tttgaagccc aagacaccaa ggatcttccc aagaactggc aagtccccga tgtgctcttc 1380 ctattgattt tgcaccccgc ccagtcggca tccgaataac caattaaatc aaatgtggat 1440 cccctagggt accaaagccc aaacttagga gtataagcca gatatctcaa gattcgtttt 1500 acggccgtaa ggtgtgattc cttagggtcg gattggaatc ttgcacacat gcaaacggaa 1560 agcataatgt ccggtcgaga tgcacataaa taaagcaatg aaccaatcat cgaccggtat 1620 accttttgat ccacggactt acctcccgtg tcgaggtcga gatgcccatt agttcccatg 1680 ggtgtcttga tgggtttggc atccttcatc ccaaacttgg ttagaatgtc ttgagtgtac 1740 tttgtttggc aaatgaaggt gccctcttgg agttgcttga cttggaatcc tagaaaatac 1800 ttcaactccc ccatcattga catctcgaat ttctgtgtca tgatcctact aaactcttca 1860 catgtagact tgttagtaga cccaaatata atatcatcaa cataaatttg gcatacaaac 1920 aagtcatttt caagagtttt agtaaagagt gtaggatcgg ccttgccgac tttgaagcca 1980 ttagcaataa ggaaatctct aaggcattca taccatgctc ttggggcttg cttgagccca 2040 taaagcgcct tagagagcct atagacatgg ttagggtact cactgtcttc aaagccggga 2100 ggttgctcaa catagacctc ttccttgatt ggtccgttga ggaaggcact tttcacgtcc 2160 atttgataga gcttaaagcc atggtaagta gcataggcca ataatatgcg aattgactca 2220 agcctagcta cgggtgcata ggtttcacca aaatccaaac cttcgacttg tgaataccct 2280 ttggccacga gtcgagcttt gttccttgtc accactccat gctcatcttg cttgttgcgg 2340 aagacccatt tggttcctac aacattttgg ttaggacgtg gaactaagtg ccatacctca 2400 ttccttgtga aattgttgag ctcctcttgc attgccacca cccaatccga atcttggaga 2460 gcttcctcta ccctgtgtgg ctcaatagag gaaacaaaag agtaatgttc acaaaaatga 2520 gcaacccgag atcgagtagt taccccctta tgaatgtcgc cgaggatggt gtcgacgggg 2580 tgatctcgtt ggattgcttg gtggactctt gggtgtggcg gtcttggttc ttcctcatcc 2640 tccttttctt gatcatttgt atctccccct tgatcattgc tatcatcttg aggtggctcg 2700 tcttcttgat tttgctcttc atcattttga gcctcatcct cattttgagt tggtggagat 2760 gcttgcatgg aggaggatgg ttgatcttgt gtacttggag gctcttcgga ttccttagga 2820 cacacatccc cgatggacat gttccttagt gcgatgcatg gagcctgttc ttcacctatc 2880 tcatcaagat caacttgctc cacttgagag ccgttagttt catcaaacac aacgtcacaa 2940 gagacttcaa ctagtccagt ggacttgtta aagaccctat atgcccttgt gtttgagtca 3000 taaccaagta aaaagccttc tacagtttta ggagcaaatt ttgattttct acctctttta 3060 ataagaatga agcatttgct accaaaaact ctaaaatatg aaatgttggg ctttttaccg 3120 gttaggagtt catatgatgt cttcttgagg attcggtgaa gatataaccg gttgatggcg 3180 tagcaggcgg tgttgaccgc ttcggcccaa aaccggtccg gtgtcttgta ctcatcaagc 3240 atggttcttg ccatgtccaa tagagttcga ttcttcctct ccactacacc attttgttgt 3300 ggcgtgtagg gagaagagaa ctcatgcttg atgccctcct cctcaaggaa gctctcaatt 3360 tgagagttct tgaactccgt cccattgtcg cttcttattt tcttgatcct taagccgaac 3420 tcattttgag ctcgtctcaa gaatcccttt aaggtctctt gggtttgaga tttttcctgt 3480 aaaaagaata cccaagtgaa gcgagaataa tcatccacaa taactagaca gtacttactc 3540 ccgccgatgc ttatgtaagc gatcgggccg aatagatcca tgtgtaggag ctccagtggc 3600 ctgtcagtcg tcattatgtt cttgtgtgga tgatgagtgc caacttgctt ccctgcttgg 3660 catgcgctac aaatcctgtc tttctcaaaa tgaacattgg ttagtcctaa aatgtgctct 3720 ccctttagaa gcttatgaag attcttcatc ccaacatggg ctagtcggcg gtgccagagc 3780 caacccatgt tagtcttagc aattaaacat gtgtcgagct cagctctatc aaaatctact 3840 aagtatagct gaccttctaa cacaccctta aatgctattg aatcatcact tcttctaaag 3900 acagtgacac ctatatcagt aaaaagacag ttgtagccca tttgacataa ttgggaaaca 3960 gaaagcaagt tgtaatctaa tgaatcaaca agaaaaacat tggaaatgga atggtcaggt 4020 gaaatagcaa ttttacccaa acctttgacc aaaccttgat ttccatcccc gaatgtgata 4080 gctcgttggg gatcctggtt tttctcatat gaggagaaca tccttttctc cccggtcatg 4140 tggtttgtgc atccgctgtc gagtatccaa cttgtgcccc cggatgcata aacctacaaa 4200 acaagtttag ttctttgttt taggtaccca aacggttttg ggtcctttag cattagatac 4260 aagaactttg ggtacccaaa cacaagtctt ggagcccttg tgtttgcccc caacaatttt 4320 ggcaactacc ttgccagatt tgctagtcaa cacataagat gcatcaaaag ttttaaatga 4380 aatggcatga tcatttgatg cattaatagt tttctttcta ggcaacttgg catgggttgg 4440 ttgcctagat ctagatgtct cacccttata cataaaagca taattagggc cagagtgaga 4500 cttcctagaa tgaattttct taatcttatt ctcaggatac ccggcagggt acaaaatgta 4560 accctcgtta tcctgaggca tgggagcctt gcccttaaca aagttagaca agttcttagg 4620 aggggcatta attttgacat tgtctcccct ttgaaagcca atgccgtcct taatgcccgg 4680 gcgtctccca ttatagagca tgcttctagc caatttaaat ttttcatttt ctaagtcatg 4740 ctctctaatt ttagcattaa gttgtgctat gtgatcattt tgttttttaa ttaaggcaag 4800 gtgatcatgg atagcatcaa cattaatatc tctacatcta gtgcaaatgg acacatgctc 4860 aatagtagat gtagagggtt tgcaagactt taattcaata accttagcat gcaacaaatc 4920 attcttagtt ctaaggtcag aaatagtagt attgcaaaca tcaaaatcct tagccttagc 4980 aattaatttc tcattctcat ttctaaggct agcgatggaa gcattcaatt catcaatcct 5040 agcaagcaaa tcaacatcat tatttctagg atcaatgcaa acatgagaat caaccttagc 5100 caacaaatta gcattttcat ttctaaggtt gtctaaaatc tcatggcaag tgcttagctc 5160 actagataat ttttcacatt tttctctttc tagagcataa gcatttttaa ccttaacatg 5220 tttcttgttt tccttgatta ggaagtcctc ttgggagtcc aagagatcat ccttttcatg 5280 gatagcacta attagctcat ttaatttttc tttttgttcc atgttaaggt tggcaaaaag 5340 aatacgcaag ttatcctcct catttttatc atcctcatca ctagatgttt catatttagt 5400 ggaggacttt gattttacct tctttttgcc gtccttggcc atgaggcact tgtggccgac 5460 gttggggaag aggaggcctt tggtgatggc gatgttggcg gcgtcctcgt cgtcggagga 5520 gtcgcttgag ctttcgtcgg agtcccactc ccgacaaaca tgggcatcgc cgcccttctt 5580 cttgtagtac ttcttctttt ccttcctctt gcccttcttg tcgttgtccc tgtcactatc 5640 acttgataat ggacatttag caatgaagtg accgggctta ccacacttgt agcaaacctt 5700 cttggaacgg gatttgtagt ccttcccttt ccgttgcttg aggatttgcc ggaagctttt 5760 gatgattagg gccatctcct cgttgtcgag cttggaggcg tcaattggtt gtctacttgg 5820 tgtagactcc tcctccgttg ccttgaaggc cacgggttgc gcctcggatg tggaaggctc 5880 atcaagctca ttgatcttct tggagccctt aatcatgcat tcaaagctaa caaaattccc 5940 gatgacttcc tcgggggtca ttagtggata tcttggatta ccacgaatta attgaacttg 6000 tgtggggtta aggaaaataa gagctcttag aataacctta accacttcgt ggtcatccca 6060 ttttgtgctt ccgaggttgc gcacttggtt caccaaggtc ttgagccggt tgtacatgtc 6120 ttgcggctcc tccccttggc gaagacggaa gcgaccgagc tccccctcga tcgtttcccg 6180 cttggtgatc ttggtgagtt catcaccctc gtgcgccgtc ttgagtaggt cccaaatctc 6240 cttggcgttc ttcaatcctt gtactttgtt gtattcctcc ttgcttaggg aggcaaggag 6300 gatggttgcg gcttgggagt tgaagtgctc gatttgggcc acttcgtccg tgtcatagtc 6360 ctcatcccct attgatggta cctgtacacc atactcaaca acatcccata ttcttttgtg 6420 gagagaggtt agatgaaatc gcatcaaatt actccacata gcataatctt caccattaaa 6480 agttggtggt ttgcctaatg ggacggaaag taaaggtgta tgtttaggaa tgcgagggta 6540 gcgtaggggg atcttactat acttcttgcg ctcttggcgc ttagaagtga cggacgccgc 6600 gtcggagccg gaggtggagg tcgatgaagt gtcggtctcg tagaagacca ccttcctcat 6660 ccttttgtgc ttgtccccac tccgatgcgg cttgtgagaa gatttttcct tcttctcctt 6720 atggtgagaa gaggaagatc ttttctcctt ccgcttggag gatttctttt tcttctctct 6780 tctcttggtg cgggactctt tcgatgaaga tgaagtgctc ccttggcttg tagtgggctt 6840 gtcgtcgccg gtctccatct ccttcttggc gtgatctccc gacatcactt cgagcggtta 6900 ggctctaatg aagcaccggg ctctgatacc aat 6933 // ID FATIMA_TM_LTR repbase; DNA; GRAS; 482 BP. XX AC AF326781; XX DT 16-OCT-2002 (Rel. 7.09, Created) DT 10-OCT-2005 (Rel. 7.09, Last updated, Version 2) XX DE Triticum monococcum gypsy-type retrotransposon, FATIMA_TM_LTR, DE long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Long terminal repeat; GYPSY superfamily; retrotransposon; KW target site duplication; TREP235; FATIMA_TM_LTR. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RA Wicker T., Stein N., Albar L., Feuillet C., Schlagenhauf E. RA and Keller B.; RT "Analysis of a contiguous 211 kb sequence in diploid wheat RT (Triticum monococcum L.) reveals multiple mechanisms of genome RT evolution."; RL Plant J 26(3), 307-316 (2001). XX RN [2] RA Wicker T.; RT "Direct submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AF326781; Positions 103127 103608. XX CC FATIMA_TM_LTR is a long terminal repeat from FATIMA CC retrotransposon. CC 5bp target site duplications. XX SQ Sequence 482 BP; 117 A; 124 C; 113 G; 127 T; 1 other; tgagggagtc ctggattagg gggtgcttga gtagccggac tataccttca gtcggactcc 60 aggactatga agatgcaaga ttgaagactt cgtccgtgtc cggatgggac tttccttggc 120 gtggaaggca agcctggcga tgcggatatt caagatctcc taccattgta accgactttg 180 tgtaacccta acnccctccg gtggtctata taaaccggag ggttttagtt cgtaggacaa 240 cttcatcata caacaatcat accataggct agctactagg gtttagcctc cttgatctcg 300 tggtagatct actcttgtac tacccatatc atcaatatta atcaagcagg acgtagggtt 360 ttacctccat caagagggcc caaacctggg taaaacattg tgtcccttgt ctcctgttac 420 catctgccta gacgcacagt tcgggacccc ctacccaaga tccgccggtt ttgacaccga 480 ca 482 // ID FATIMA_TM_LTR repbase; DNA; GRAS; 482 BP. XX AC AF326781; XX DT 16-OCT-2002 (Rel. 7.09, Created) DT 16-OCT-2002 (Rel. 7.09, Last updated, Version 1) XX DE Triticum monococcum gypsy-type retrotransposon, FATIMA_TM_LTR, DE long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; FATIMA_TM_LTR; KW GYPSY superfamily; Long terminal repeat; TREP235; retrotransposon; KW target site duplication. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RA Wicker T., Stein N., Albar L., Feuillet C., Schlagenhauf E. RA and Keller B.; RT "Analysis of a contiguous 211 kb sequence in diploid wheat RT (Triticum monococcum L.) reveals multiple mechanisms of genome RT evolution."; RL Plant J 26(3), 307-316 (2001). XX RN [2] RA Wicker T.; RT "Direct submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AF326781; Positions 103127 103608. XX CC FATIMA_TM_LTR is a long terminal repeat from FATIMA CC retrotransposon. CC 5bp target site duplications. XX SQ Sequence 482 BP; 127 A; 113 C; 124 G; 117 T; 1 other; tgtcggtgtc aaaaccggcg gatcttgggt agggggtccc gaactgtgcg tctaggcaga 60 tggtaacagg agacaaggga cacaatgttt tacccaggtt tgggccctct tgatggaggt 120 aaaaccctac gtcctgcttg attaatattg atgatatggg tagtacaaga gtagatctac 180 cacgagatca aggaggctaa accctagtag ctagcctatg gtatgattgt tgtatgatga 240 agttgtccta cgaactaaaa ccctccggtt tatatagacc accggagggn gttagggtta 300 cacaaagtcg gttacaatgg taggagatct tgaatatccg catcgccagg cttgccttcc 360 acgccaagga aagtcccatc cggacacgga cgaagtcttc aatcttgcat cttcatagtc 420 ctggagtccg actgaaggta tagtccggct actcaagcac cccctaatcc aggactccct 480 ca 482 // ID Copia1_HV_I repbase; DNA; GRAS; 4497 BP. XX AC . XX DT 06-FEB-2003 (Rel. 8.01, Created) DT 08-AUG-2007 (Rel. 12.07, Last updated, Version 2) XX DE Copia-like LTR retrotransposon. XX KW Copia; LTR Retrotransposon; Transposable Element; KW endogenous retrovirus; Non-LTR retrotransposon; COPIA superfamily; KW TREP1162; TREP730; Katarina; HORPIA; Copia1_HV; Copia1_HV_LTR; KW Copia1_HV_I. XX OS Hordeum vulgare OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Hordeum. XX RN [1] RP 1-4497 RA Wicker T.; RT "Direct submission."; RL Direct Submission to Repbase Update (from TREP) (08-JAN-2003). XX DR [1] (Consensus) XX SQ Sequence 4497 BP; 1297 A; 1035 C; 1243 G; 922 T; 0 other; attggtatca gagcctcgac gatctacgat atacgatgac ggacagcgac gctgagtcgg 60 tcaagtcctg gcagcggcgg gtgccaaggc gaacaagaac ggcgacaagg tgaagaaggg 120 cgtcaagtca gcaaccagtg gtgaaggaac gagcggcgct aacgtccagg cgcatcgcaa 180 catccccatc cagtacccga tgctcaccga cgccaactac gacgtgtgga cggtgaagat 240 gaagattatt ctttgatccc ttcgagtgtg ggaggccatc acggacgacg acgtcgacga 300 ggagcgcgat gaaggtgcca tggccgccat agcccagtct gtgccggatt ccgtgctgat 360 gacattggcg gagttcgaga cggcaagaga ggcgtggaac gcactcaagg agatgaggat 420 cagagaagat cgcgtcacca aggctcgggc acaagtgctg aagcgccaat ttcacaagtt 480 gcagatggag gaaactgaat ctgtgaatga ctacgccatg cctcttacta ctttggtggg 540 agagatccgc gcgcttggtg caaagctcga tgagaccgag atcgtgcaga aatttttcag 600 ttctgtcact gataaattca cgtacatcat cggcacgctc gagcaacttt acgacatcga 660 cgacatgacc ataacggagg cgatcagacg attgccgaca tgagaagaga atgctcctgg 720 ctgtaagaaa cgcaaaagag gacgtatgag accaactcat gtactcgcgc acagatcggg 780 aagacccaag taacaaagtg aaggcgagat cggtggcgaa ggctcaacca acacgaaagg 840 cgatggacaa accgaaaaag gcaacgtgaa aacgcaaacc acaaggtcat agtaaggcgg 900 gacaatctat aagagcagaa accacagaac taggactcgt ccgaagtcaa ctgctataac 960 tgcaataaca tggctcacct tgcgaacaat agtccaaagc ctaacaagcg ggagatcaag 1020 gcaaatttgg caaagcagga agacgaaggt ccaggtcttc tgatgtccga agtttgtgat 1080 ctcgctgaaa cggtggttgt gaaaccaagc cgaaaggtgc tacttcatga ggaaaaagtg 1140 acaccaaagt tatccggtga tcagaacgtg tcgtggtatc tagacacggg tgccagtaac 1200 cacatgacgg ggtgcaagga gaaattcctc gagctggaat tcgatgttga aggctcggtc 1260 aagttcggtg atggttcagc tgtggagatt tgcgggcaag gatctgtcct ctttgcgggt 1320 ctcacaggcg aacatcgcat actcaccgga gtgtactaca tcccacggct gcgcaacaac 1380 atcatctcta ttgggaagct tgacgagaat ggatgcaagg tgaatataga gagcggagtg 1440 atgacgatct tcgacaacct ccgaaacgtg ctagctcatg ttaatcgcac acggaatacg 1500 ctctatatcc tcaaccttga tcaatctcaa ccggagtggt ggcttgccaa gagtgatgat 1560 gatttgtggt tatggcatgc tagatttgga cacgttaact tctacgcctt ggaaaagatg 1620 tcaaagatgc agatggtatc cgggatgcca gttatcgacc atgttgatcg aatatgtgac 1680 gggtgcttgg ttggaaaaca gcaccgcagg ccattccctg ctcagtctac ctatcgtgca 1740 agtgatgcac tcaagctgct ccatggtgat ctatgtggcc ctatcacccc ggcaactcac 1800 gctggaaaga agtatttctt ccttgtggta gacgactact cgagatatat gtgggtcatt 1860 ctcctacgat ctaaagatga ggcgtttgaa gcgttcaaga aattgaaggc cgcaacagag 1920 atggaacaca agctgaaggt tcgcgctcta cggacagatc gcggcggaga gtttacgtcg 1980 aattagttca acgactacta cgagaagatt ggcataaaga ggttcctcac ggcaccttac 2040 acgccgcagc agaatggggt cgttgaaagg cgcaatcgaa ccgtcgttga catggcaagg 2100 aatttactca agagcaagaa cctgccgggg actttttggg gagaagctgt ctcgacggcg 2160 gtctatcttc tcaaccgggc tccaacgaag gcggtggtcg gcaagactcc gtatgaagca 2220 atttacggac gtaagccgaa tgtgtctcat ctacggacat tcgggtgcgt ggcacatgtg 2280 aagacggcgg aaccgcacct ctcaaagctt gccgatcgta gcaccaagat ggtgttcatc 2340 ggatacgaga gcagttctgg caccaaggca taccgtttct acgatccaca aaccaagcgt 2400 ctacggattt cacgcgactt cgtgtttgaa gaaaaccaag cgtggaattg gagcgccgca 2460 gccgacgatg ctccaaacag taacatattt gcagttgaat ttccaactga tgatgatgca 2520 ggggaggatg tccaggtgat tggcaagacg cccaaaccaa ggtgaccaca atggtagtga 2580 tcatcatggt gccgacaccg acgacgacgc gcataggtcg caaggagata gcgacaacgc 2640 cgcgcacgac acaggcggag atctcgacga caacatcgac aacgaggcgc atagtgacga 2700 cgacaatcaa gatgatggtc acggtcacga cgactacgcc gacgacacgg atgtcgatga 2760 cacaccaagg tctcagccgt cttcctcaag tgcatcaaca ccgacacaat ttgtgtcgcc 2820 tccctcgcaa gccacaacgg actcctcagg gcctcgtcgc tacaagaccc tcaagaaagt 2880 ctacaagtac acaaagccag ttacgctcga gtactccgga ctatgtctgt tcggagttga 2940 ggagcggcga acttcataga ggcgagcaaa agtcctagct ggacgcacac catggatgag 3000 gagatgaagg caattgagag caatggcacg tggactttgg taacccgacc tccaaaccaa 3060 aagacgatag gtttgaagtg ggtttacaag ttaaagaagg acacagaggg tgccattgtg 3120 aagtacaagg caagactcgt tgcaaagggc tacgtacaac gtcaaggagt tgactatgat 3180 gaggtgtttg catcggttgc tcgaatcgag acggtgagag tgctcctagc tttggcagca 3240 caagaggatt ggaaggttca tcatatggat gttaaatccg ctttcctcaa cggcgatctc 3300 acaggagaag tgtacgtgga acaacccctc ggctacgaga agaaaggcga agaagggaaa 3360 gtttacaagc tcaagaaggc actttacggg ttgaagcaag cgccaagagc ttggaactca 3420 aagttagacc gaagtctggt ctcgctcggg ttcaagagat gtcccctcga gcacgcagtc 3480 tatacaaaga actccaaagg ctcaaacctg ttagttggag tttatgtcga cgatctgatt 3540 atcaccggag atagcgtaca agaaattgaa cgtttcaagg cgcaaatgaa gaacaagttt 3600 agcatgagtg atctgggatt actcagctat tacttgggca tcgaagtgaa gcaaagctcc 3660 ggagagattt ccctatgtca atcggcttac gcggtcaagt tattggacaa gtgtggcatg 3720 tcagattgct acgcgacaca agttccaatg gaccaacgtc acaagttgag caagcgtagc 3780 tcaaatccgc cggtggacac cacaatgtat cgaagcgttg tgggtagcct aagatacttg 3840 gtgcataccc gacctgactt ggcttattca gtcgggatcg tgagtcgttt catggagaaa 3900 ccgacaaccg aacacatgag cgcggtcaat caaattctac gctatgtgaa aggcacaatt 3960 aatcttggct gcacgtacag aaagggaaag gaaggattga tccttcgtgg atattcagat 4020 agtgacatgg caggtgatgt tgatgaccga aagagcacaa cgggcatggt tttctacctt 4080 ggcccgaatt cgattagctg gaattctcag aagcaaaagg tggtggcact gtcttcatgc 4140 gaggcagaat acatagcggc aagcacggcg gcttgtcaag cagtgtggct gagaagactc 4200 ctagctattc ttgcaaagcg ggaggtgcag aaggtgtcac tgaagatcga taaccaagct 4260 gcaatctcgt tgtgcaaaaa ttcggttcat cacgaaagga gcaagcacat agatacccgg 4320 ttccaccata tccgggagtg cattgaagaa gggttgatcg aggttcaaca tgtgaacacg 4380 aaagaccaac ttgccgatat tttcaccaag tccctcggtc gacagaagtt catcgagatg 4440 agggggaaag tcggagtgca agaagtgaag tcaagcaaca agattaagga ggtgaat 4497 // ID En/Spm1_TM repbase; DNA; GRAS; 9841 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE Nonautonomous En/Spm-like DNA transposon. XX KW DNA transposon; transposase; En/Spm superfamily; CACTA; TREP773; KW Balduin; En/Spm1_TM. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RP 1-9841 RA Wicker T., Yahiaoui N., Guyot R., Schlagenhauf E., Liu D.Z., RA Dubcovsky J. and Keller B.; RT "Dynamic genome equilibrium at orthologous LMW glutenin loci of RT the A and Am genomes of wheat."; RL Unpublished.. XX RN [2] RP 1-9841 RA Wicker T.; RT "Direct Submission."; RL Direct Submission to Repbase Update (from TREP) (JAN-2003).. XX SQ Sequence 9841 BP; 2680 A; 2271 C; 2322 G; 2568 T; 0 other; ttacactact ggaatcagct agtttgccat ctgccagttc tttgccgtcc gctagcggac 60 ggcaaagatt ctttgctgtc ggctagcgga cggcaaagag ggaggggccc cactgacgag 120 ctgcaaaaaa aaacctaaca ggccccctct ttgccgtccg ctagcggacg gcaaagagca 180 agaaggcgga cggcaaaggc tggcggacgg caaagaggga ggccccacgt aacgttaacg 240 gggccgcgcc ctcctccacc ctgcaggtaa tcttcttcct ttttttcttt ttttctgttt 300 ttttagtttt aggtttatgt ttagtgtaga tttagtttta gttttaggat tagttttagg 360 tttataggtt tagtcttagt ttagttttag gtttagattt agtttttttc tttttctgtt 420 tttttagttt taggtttagt ttagttttag gaaagaagaa aaagagaaaa aagaggagat 480 caggagaaga agaagaggag gaggagaaga aaaaagaaga agaggaaaaa gaagaagaaa 540 aaagaggaga ggaggagaag aagaagagga aaaaggaaag gaagaagaag aagaagaaga 600 aggaaaaaaa ggaagaaaag gaagaaaagg aagaagaaga aaaggaaaaa agaggaaaaa 660 cccccgaccc gacacggcac cccgacccga cacggcaccc cgacccgaca ccccgacccc 720 gagcctgacc cgacaccccg accccgagac cccgaccccg agaccccggg ccttacccga 780 caccccgacc ccgacactga cacggcaccc cgaccccgac ccggcacccc gacccgacac 840 cccgaccccg agaccctgac cccgaccgcg agtcggaccc gacaccccga ccccgacacc 900 gacacggcac cccgaccccg acccggcacc ccgacccgac accccgaccc cgagaccccg 960 accccgacac ggcaccccga caccgacagg gcaccccgac caccgacacc tcccgaaaat 1020 taaggtgttc tttggccttc cagaggccga cggggtcata tatttgtgaa ttattagtta 1080 ggtcatatat ttttcgattt agttatgaaa aacatcatat ataattgtgt tgatcgtgca 1140 gttttaaatg tgcagttgtt tcatcgctgc gaggtttggt gttcgacgac ctcgccgtgc 1200 gtttgacgag ctctgcccct tcgttcgtgg gtgagcacaa ataacaagtc ctcctccccc 1260 attaattatt tgatctattc cgatgaaact tgatagctag ctatatatgt gtcttgaatc 1320 atcagtatgc gtaaccaata tgtgtctccc gttcgaaagc gtcatagtta taaatatgca 1380 tgcatttgca tatttataac cttgattctt tcgaattgtc caacgctatc catggacagc 1440 ccgagtatgt gcagattgca tggacgtaat aaaattgaca aagtagatca actgatgaat 1500 atatacatgg tgaattacat atataattgt tgtgtgtcca gtagctctga aagtcaagat 1560 gagtgaccgt gcttggatgt ataccggtca cactggtcag aacaaatgga gcgctgaatg 1620 gttcacaaaa actaaggggt ttgtgcaagc cgcatttgca aatggccaaa agaaaacctg 1680 gtgcccctgt ttccggtgcg gcaattggga aaagaagaca gaggctgaaa tgggcaaaca 1740 cctgcagaag agtggtttta cgcccgatta tacggtgtgg acatttcatg gtgagtctgc 1800 ccaacgtgac cgagctgagg tggatcgtcg tcgcaccggc gagcatggta ccgggatgga 1860 aaacatggtg caagactatg atgatgctcg ggattcggac gaggagatgg aggaatctgc 1920 aaaggccttc aatgaaatgt tggagtcttc gaaacgtccg ctccacgagc acactgagct 1980 ttgtcagttg gatgccatct cacaagtaat ggctctgaag gctcagttca acttgggcag 2040 agaatgctat gacgcaatta tgacagtatt tggacgcttt ctacccaaag gccatgtaat 2100 gcctgcaaac ctgtaccagt cggacaaaat cctccgtgca ctgaagatgc cctatgagaa 2160 gatacatgcc tgtgagaaag gatgtgcctt atttaggctt gactatgcgg acttgaacta 2220 ttgtcccatt tgcaagtctt ccaggtatat tgtggtagac aacggtatgg gtgagaagac 2280 acagaccaaa atccccgtta gtgttcttcg gtatatacca atcgtaccaa gacttcaacg 2340 tcttttcatg gtcgaagaga cggccagaca gatgacatgg cacaaaacag gcaaaagaac 2400 cgaactagat gcagatggga atctgatgat ggtacacaca tcggatggtg ttgcgtggaa 2460 aaagtttgat gaattacatg ctgacaaagc ggcagatccg aggcatcctt gagtcggcat 2520 cagcacggat gggttcagtg tgtttggtat gacggcagcc caatatagtt gttggcccat 2580 atttgtcttt ccactcaatc tccccccgga cagattatgc aaagaaagaa cattttcctg 2640 acgttgataa ttccaggacc caactatccg ggcaaaaata tgaatgtgta catgcagccg 2700 cttaaggacg aattgcaaga agcctgggat aatgggttca agacatacga cgcctttagc 2760 aaacggaact tcataatgcg tgtctggtac atgtactcga cgcatgactt gccggcgtat 2820 gcgctattcg ttggctggtg tgtgcatgga aggttcccgt gccccacatg caagggagct 2880 cttgagtttc gttggcttca ggccggtcgc aagttttctt gcttcgacat gcatagacag 2940 ttcctggatc ctcgccataa gttcaagaaa gacaagaaga acttcatcag gggtagagtt 3000 gtcaaaaact ctgcaccacc tgcattgaca ggccaacaga ccctggatga gttaaatgct 3060 ctcgagccag atccacaacg tccagggtac ttcaaggggt ataatactaa gcacgcgtgg 3120 actcacaaaa catgcttatg ggatctgcct tacttcaaag acctcctttg cccacacaac 3180 atcgacgtga tgcacactga gaagaatatc gccgaggcac tttttggtac attgttcggc 3240 atagatggga agtcaaagga taatactaag gctagagtcg atctagaggc gctatgtgat 3300 aggccgttac aaaacatgaa agaaccgaaa ggaaagcaga actggacgaa gccaaaggca 3360 tggttcaatc ttggaaggcc agctatgagg gaaattctct tgtgggtgca acagcagttg 3420 atgtttcccg atgggtatgc agcgaatcta aagaggggag cgaatcttga taaactgaag 3480 atatttggtc tcaagagtca tgattggcac atatggattg agcgggtaat gccggtgatg 3540 ttgcgtggct tcatccctga ggatgaatgg ctagtactgg cagaactcag ctatttcttc 3600 cgtgttcttt gtgcgaaaga actatcgcct ggcgtgctag aagaaatgga agagttggcg 3660 ccggagttga tctgcaagtt agagaagatc tttccaccgg gcttctttaa tccaatgcag 3720 catttgattt tgcatctccc gaccgaggca agattggggg ggcccgtgca aaatcgttgg 3780 tgctacccaa ctgagaggat gcagaagacg cttcgagaaa aatgtaaaaa taaacgtaga 3840 attgaagcat caatggctga ggcattcatt acagaggagg cggcaaactt cgtaacagcg 3900 cactacgaag ccaaaaatcg tcatttgcat aatccgaagc ctcggtacaa tgctgacgag 3960 cctaaaaagg gtggatccaa cctcagccta ttcaaaggga atctcgcacc agctagtgtt 4020 tcacatccag tatctttgga taacgaagaa tggcggacca tttcgttgta tatcttcaac 4080 aacctgatag aagtgcggtc gtacatcgag taagttctcg gtacattgtt tcgcaacttc 4140 tatttccttt gaactactct tattcctgga tatgtcatac agtcgatacg ttaccatatt 4200 ctcgtatgga gcggagatcc aaaaggattc cgtcgaagag tatgagcttc tcgcaaagca 4260 aggaggtggc tatcccggtt tcatctcttg gttcaaacaa acggtaattt ctattagaca 4320 atttcatttc attcactaat ttgtgcataa tgcaacaatc ctttcatatt aaacctctag 4380 gctaattcag agtctatgga cgccgaattg agacaagtcg ctaatggttt tgactataag 4440 gtccgttcat ttgacaagta cgacatcaac gggtaccgct ttcgtaccta tggcaaagag 4500 ctatcgatgg tggaccgaaa gtcaacaaat ttttgtgtat ctgctatcgg tgaaggaggt 4560 accgagtatt atgggaaagt tgaagcaatt tatgaacttc tgttctatgg tgaaaaccca 4620 ccgaatgtcg tagtcttcaa atgttattgg tttcagccga aggagactag aaggactcat 4680 gaacatgtag ggctagttga aatcaaccaa agcactcatt tagatgttcc tgatgtctat 4740 attatggctc aacaggcgac ccaagtattc tatctaccgt gggcctgcca aactaatcca 4800 aatctgaaag gttgggatgt cgtttatgaa gtgccgccac gtgctagact ttctccccca 4860 aaggaagagg attatgaacc tcacattaac ccagacacat atgaaggaga attcttccaa 4920 gagacacgtc tttccaaaaa gcgtttcaag aaccactata cttcacccca aaacattgaa 4980 gtagacagcg acaatgaatc cgacatcacc ccagaggagg aacaagaaga gccggaacaa 5040 gaagaggtta ctgcggcgga tgacctgtca atgcttgacc gattacgtca aggtggcctt 5100 gcacatgttg atgccaatga accctatgag cccgtcattg attatagtga tgatgatgat 5160 tatgcattta ttgatgatac tgatcgagat tattagtagt gtcaggtatt acattttttt 5220 atgttgtact tgatgatgat acacttaagt gatacacata ttattattca tgtcggtctt 5280 tttttatgtt gtactaattt cgtttactgt ttgtcatggc aggtgttgaa agatggtggg 5340 cgctggtcgg gagcgtggtc tgaggtcttc cattccagac gcacctctcc gccgagcgtt 5400 gctggacagt atggccacac cgccgggccc ttcttcatcg accatggtgc ccagcagggg 5460 acgaggtagg aagagaggag gtggggcacg tggtcgtggg agaggaggta gggtgactgc 5520 tacggtgcct tcctcgccgc cacccccaac catttcaccc gagcacgtga ctgctagggt 5580 ggactcgtcc gaggaggagg ctacacggac tccggtccac aagcctccgg tccactggtc 5640 ttcggcccac gagagttcgg cccacgtgac cccggagaag cacacgtccg gatggggtac 5700 ctggcccgat caaccccagg aagcggagtg gccatgctga tgatggcggc gagccgactg 5760 atctttgaga gaaggggggc accgtctacc agcgtggtgc tacacggctc ccgtccgtgc 5820 ccggtgaccc gcgagcatag gtggttgatt ttccctgatg gggagaggta cgtaagtgca 5880 tttaatattt ttgtaccttg tgcattcacg ttttttcaaa taactaatgc gttggccttg 5940 tcatgctgca ggggttggga ccaccatcat agtgtccgcc ggcccaactc cgtccttgga 6000 gttctttgcc ggcaaaactt cccggggttt gtcacgttgc ctggtgaggg tcggcttcca 6060 gagcttggat tgagctggga gcactacgtg gctgccccgg ccccgccaaa tgagattatc 6120 gacggtgtca tgtgtgacac gagggcagac atggtgatca gaaagttctg ggtaatttct 6180 cctttacaca tttaaaaatc ttcaactagc tagttattaa ttgtactaat caacattgtc 6240 tcatttgatt gcagacattc tacaggtgtg aggagggata cgaggaggac gcggcacatg 6300 ttatcgagaa cgtctgcaag cgcctactcc agaacttacg gcacgaggct cgggtgcagg 6360 ctgttcgaga ctactacgcc ttgcgtggta tcaagaagac caagccggcg tgccgcgata 6420 agttcctgag taaggagcag tacatgaagg taattcttaa ggccttctct acttacgttc 6480 cttcatttag taattcttag ccgtagcgct caagtttcta tttgctaact taggcgcctc 6540 cgagatggtg tgcggatcgg atggattgtt gggaggtgtt ggtcgatgag tggtgctcac 6600 aacgatggct agccctccac aaggaggcca aggacaaacg tgcccaaatg gaaggtgtgc 6660 cacaccatca aggcagctcc aacttatatc agttcgggcg caactgggta tgtggtttgc 6720 ttcatgattc atgcaattca ttcatcatgc tagcttgagc cctttaatta ctaattttca 6780 ttgtttctct ctttcaggca cgctacaata aggcggataa ggtgccagag gtgtacgacc 6840 tgtatgccat ggcccacact gcctctttca agaaagtcaa ggctttctct cagtctgacc 6900 tcgatgatgc aaacaacttc accaacatct cctcccacaa caagctcgtg agatatagag 6960 atgaggggaa ggcgaggaaa ggggaggact ttaacccgag ccagggtccc attgatccag 7020 agctattgat gatatctggt ggcgggaggt cccatggctc catagccatt ggagatggac 7080 ttatccgttg tcctagcact ctcccggaga tcaaggcacg ccagtcgagc tccgctcctg 7140 agataaggcc tcgtgaacgg ccagtgcaac tcgccatcaa ggttagtgat acgtactgag 7200 ttatctttct ccattacatt gtgtgcgctt ccatcaatga ttacaaatgg tcatgtgagt 7260 ggtgttgtag gctgctatac agagtgaggg agatagaacg gagaaacttc tggcggaggc 7320 ggcggagagg cagcgggagt tggaggagag gacgacaaag atgatggagg aggagagggc 7380 acggaatgac atgcaggcaa gggccatgta cgagctcctt gtggtaagtt tcttctgcag 7440 attagccaaa acattcatgt agtgtttgtc tcattactaa ctagtatgac tgagtcgtca 7500 aaaccaaatg tgcagtctgt gtgcgagaag acaggtcaga ccgctctgcc gatgccagtg 7560 attgctcctg ggaccatggt gagttttatt tgaatggaca ttacttgcta gtcttaacat 7620 ttgagtgtca tcatgctaac aagacattgg aaatgatctt tggtgcagcg taactccaga 7680 caagcatcgc acgatccttc tccagctacc gacacgagcc accccgctcc tacacctcct 7740 ggatcttggt aagtttatct agtgttttgc ttaacacatg cataaagagc tagacttagc 7800 tttatttcct ccaatgctta ccataatgac gtagacttag cttcttctcc tccaaaatga 7860 attaataagc ttactgacct ccaaaaccat ccattttgcc taagttagct ctaaaacgat 7920 ctatacttag cttacttatg tcaaaaattg cataattagc ttagttagct catagacgat 7980 ccattttacc taagttagct ccaaaatgac ccatcttacc taggttagct tataaatgat 8040 ccagtttatc caagttagct ctaaaatgac ccaatttacc tagagtagct cctaaacgat 8100 ccatttcacc taagttagct aaaaacgatc catttcacct aaattagctg tgaaatgatc 8160 catttcacct aagtttgctc aaaaacgatc catttcacct aaattagctc ttaaatgatc 8220 catttcacct aagtttgctc aaaaacgatc catttcacct tagttagctc aaaaacgatc 8280 catttcacct aaattagctc ttaaatgatc cttttcacct aagtttgctc aaaaacgatc 8340 catttcacgt tagttagctc aaaaacgatc catttcacct tacttagctc aaaaacgatc 8400 catttcacct aaattagctc ttaaatgatc catttcacct aagtttgctc aaaaacgatc 8460 catttcacct aagttagctc aaaaacgatc cattttacct tagttagctc aaaaacgatt 8520 catttcacct agttagctca aaaacgatcc atttcaccta gttagctcaa aaacgatcca 8580 tttcacctta gttagctcaa aaatgatgcc cttcacctta gttagctcaa aaacgattca 8640 tttcacctta gttagctcaa aaacgatcca ttttacctaa gttagctcat aaacaatcta 8700 ttttacctaa gttagatcta aaatgatcca tttaacctta cttagctcat aaatgatcca 8760 ttctaccgaa gttagctcta aaatgaccca ttttacctag gttagctcca aaatgatcca 8820 tcttacctag gttacctcta aaatgatgca ttttacctaa gtttgctcat aagcgatcca 8880 ttgcacctag gttagctcat aaacgatgca tttcacctaa gttagctcac aaatgatcaa 8940 tttcacctaa attagttcat aaatgtcata tatattcttc ttcttcttca ttttcttctt 9000 cttcttcttc ttcttctaat cttcttcttc taactttctt atttcccatt ttgcagaatt 9060 cattcacttc acgaaagctt gcatagatgg agtgcttgtt tggatgaact atgtttcctt 9120 tgtatctatg aactatgcat gtatggtagg atgacactat tgtaatatgt atggttggat 9180 gcatgtatgt cgaacttgct atgtatggtt gatggaacta tgcatgtatg atgaaattat 9240 atgtgttggt tatctcatat atttgctgtg aacttgccat gtgaaaaata tatatgtatc 9300 atctatttgc tgtgaaaatg gttgggtata tgaaaaaaca gaaaaaagag ccaatatgca 9360 ggctctttgc cgtctgccac tgacggcaat gggctctttg ccgtctgccg cagacggcaa 9420 agaagccacg tggcgtccac cagtgcttcc tgggagctga cccgtttggt cagtttgcct 9480 acagtggcag acggcaaaga ctttgccgtc agtggcagac aacaaagaac ctgccacgta 9540 gtgacgtgca gatgacatca tatggcggac ggcaaaggcc ttccgttagc cacttaacgg 9600 actgacagcg cacctattgc cgtcggccgt ctttgccgtc tgccgctctc tctttgccgt 9660 ccgccgcaga cggcaaagac tttgccgtcg gtagcagacg gcaaagtagc tgtttaccga 9720 agcctacttt gccggagcct tttgccgtcc gccgctgacg gcaaaggcct ttgccgtccg 9780 ccgttcgtgc ctttgccgtc cgccatggca gacggcaaag tagctgattc ctgtagtgtt 9840 a 9841 // ID Gypsy3-SB_I repbase; DNA; GRAS; 11908 BP. XX AC AC120496; XX DT 20-SEP-2007 (Rel. 12.09, Created) DT 20-SEP-2007 (Rel. 12.09, Last updated, Version 1) XX DE LTR retrotransposon from sorghum: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW internal portion; Gypsy3-SB; Gypsy3-SB_LTR; Gypsy3-SB_I. XX OS Sorghum bicolor OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Sorghum. XX RN [1] RP 1-11908 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from sorghum."; RL Repbase Reports 7(9), 977-977 (2007). XX DR Genome; AC120496; Positions 58688 46781. XX CC Positions [2760-3296] - Reverse transcriptase CC Positions [4836-5318] - Integrase core CC LTRs are 99% similar to each other. XX FH Key Location/Qualifiers FT CDS 3933..5369 FT /product="Gypsy3-SB_I_3p" FT /translation="MADWTPSNKKEEKVVDQPWTLYTDGAWGQSGAGAAAV FT LIAPSGLRLKYAARLEFKATNNIAEYEGLILGLNKAKASGAKTLLIKTDSQ FT VVAGQVEKEYLAHNPELARYLAVVRGLERRFEGFTLHYIPRADNYEADELA FT KAAANNTPLPEGTFYQIVAAPATESLPKAFRSVLLTEGEDWRQAVVDSLKG FT KTAADDEALAKRMEARARNYTTIDGVLYKKGVVQPLLRCISQSEGRELLKE FT IHSGICGSHIGPRALSAKALRQGFYWPTHIKDAQEIVKTCKACQTFSPIQS FT GPSALTQLIPASWPLQRWGMDLVGPMPTAQGGNKFAVVAIEYFTRWIEAKP FT LATITSETIRKFFWQNIVCRFGVPSLLTVDNGKQFDSDSFKEFCHHIGTKI FT AFASVYHPESNGAVERANRTIFSAISKTLLNLRKGKWVEELPRVVWSHNTT FT VSRTTGFTPFKLLYGEEAMLPEEIKHQSLRSMKQ" FT CDS join(396..1991,1995..3872) FT /product="Gypsy3-SB_I_1p" FT /translation="MQPPQPTVQPTVLPGASPSVNAQLTSYGGALRSTLDL FT RSPLSEGLQTSPWPATYKPITLPKFNGKADPRQFLMSFEAAVASAGGNETV FT MAKSFVIAAEGDALAWYSMLRPGSIYSWENLRDKILANFQGFAVESLTSTD FT LFQCRQSQGEALREYFQRFVQTKARAPGVPEEVAIEAAIKGLRIGPFAAHL FT AREKPASMHELYHEFEKYCRSDNDYRKRLEDQNSQKRQSNDRNSQKKNLSQ FT DERRPQREAGAQMMNIEQPKNDRPEHDRPPAETRNSERRPNQAGRGGRNAG FT WPKNQNLRPRKQYCFFHGEEKDHSTRDCPDAKETQERIKSRSAPQPPTPVA FT QPREVNHTFPQTFYHSYVGGSSQQHPAPVQSNALASAYYPSFLPAWRPTQQ FT PADHNLPPNYAPPRPPHITYIESPQPRQQSLPPPPNQLQLLQAPPPPKNEP FT HPDNQIGPHTPLPTIGMILPIAGGSSMEFQTKKQKKDHLRLVNNVAVQGPV FT RCTDWSRTPITFTEEDLRLESYPHTDALVITTNVAGGVGRILVDSGSSIDI FT IFAGTFDQMKLSRSQLQPSESPLIGFGGKQIHALGKVALPVSFGTSENART FT EYVTFDVVDLHYPYNAIFGRGFLNKFNAAAHMGYLCMKIPALHGVITVHGS FT QKEARNIEKAIYKSFRNVNSVDSTQQEASQPPDMPRGKTDLADQEETKCVP FT LQEAVPDRKVTISATLSREEELDLLDVLQKNQDIFAWSAADLQGVSRDIIE FT HSLDIDPRMRPKKQRQRKMSEERTLAAKAEVQRLLDAKVIREVMYPEWLAN FT VVLVPKKNGKMRMCIDFTDLNKACVKDSFPLPRIDTSVDKAAGCQRFSLLD FT CFSGYHQVWLKKEDEEKASFTTPFGTYCYTRMPEGLKNAGATFSRMMGKVL FT GSQLQRNIIAYVDDVVVMSKRKEDHIKDLQETFVNLRSAGLKLNPEKCVFR FT VSKGKMLGYIISSEGIRANPDKTKAIMSMSEPSNKKEVQRLTGRIAALNRF FT ISRSAKRSLPFFKVLRGEGKTEWGLEQSEAFRQLKNYIATNLVITVPEPDT FT PLLLYVAASEHAVSGVLVHETSDSKGTVQRPVYYIFEALSGAKLNYTEIEK FT IAYAVLCASRKLKHYFQSHEIKVPTSQPLGDILRNKEASGRIGKWAAELS" XX SQ Sequence 11908 BP; 3698 A; 3311 C; 2740 G; 2159 T; 0 other; agattggcgc ccaccgtggg gccctcgaag gatcacccgc gatggctgga aagagaacta 60 gcaccacaag acctcgggca gagcccccca ggaggggaag gccgagaagg gccgtgcgga 120 gcacgtatgc gaccgtagag ggggaaggct ctgagggcga acagccggag aacgagcagc 180 cggagcccag ccaggaacct tctcccgccg caggcccggc gcaaccaaca gccacgcaag 240 aactctagct actgcagacg cagctgcaga accttcagca ggagcgagac cgaatcgctg 300 ctgcctacgc cgccagccaa gaggcagcag tagctgcagc acaggcagct gagatcaggc 360 agcagctttc aatcctgcag gcggagatcc ttagcatgca acctccacag ccgacggtcc 420 aacccactgt cctacccggc gccagtccat cagtaaatgc gcagctaacg agttacggtg 480 gcgcgctgag gagcacattg gaccttcgtt cccccttatc cgaaggattg caaacctcac 540 cttggccggc aacctacaaa ccaatcacgc tccccaagtt caacggaaaa gctgaccccc 600 gacaattcct gatgagtttc gaggcagctg tagcctcagc tggagggaac gaaactgtaa 660 tggcgaagtc ctttgtgatc gcggccgaag gagatgcctt ggcgtggtac tcgatgctca 720 gacccgggtc gatctattca tgggagaacc ttcgagacaa gattttggcg aatttccagg 780 ggttcgcggt tgaatcacta acctccacgg acctgttcca gtgccgccaa agtcagggag 840 aggcactgcg ggaatacttc caaaggttcg tgcagactaa ggcgagagca cccggcgtgc 900 cggaggaggt tgccattgaa gcggccatca agggtcttcg catagggccc ttcgcagctc 960 acttggccag agaaaaacca gcatccatgc acgagctgta ccatgagttc gagaagtatt 1020 gcaggtcaga caacgactac cgcaagaggt tggaagacca aaactctcag aagaggcaga 1080 gcaatgatag aaactcgcag aagaagaacc ttagccagga cgaacgccgg ccacagcggg 1140 aggctggtgc acagatgatg aatattgagc aaccaaaaaa tgacaggccg gaacatgacc 1200 gtccaccggc ggaaacgcga aactcggaac gcagacccaa tcaagccgga agagggggcc 1260 gaaacgcagg atggccaaaa aatcaaaatc tgcggccacg gaagcaatat tgtttcttcc 1320 atggggagga gaaggatcac tccaccaggg attgcccgga tgcaaaggaa actcaggaga 1380 ggatcaagag caggtcagct ccacaacctc caacaccagt cgctcaacct cgggaggtga 1440 atcacacatt ccctcaaacc ttctaccatt cgtatgttgg aggatcaagc cagcagcacc 1500 ctgctccagt tcagtcgaac gcgctagcct ccgcttacta tcccagcttc ctaccagctt 1560 ggcgcccgac acagcagccc gcggatcaca accttccacc aaactatgct cctccgcgac 1620 ccccacatat tacatacatc gaatccccgc aaccccgcca acagtcgcta cctcctcccc 1680 caaaccagct gcagctactc caagccccac ccccaccaaa aaacgaaccc caccccgata 1740 atcagatcgg ccctcataca cccctgccca cgattggaat gatcttgcca atagctggag 1800 ggtcatcaat ggagttccag acaaagaagc agaagaagga tcacctccga ctcgtcaaca 1860 acgttgcagt tcaagggcca gtaagatgca ccgattggtc aagaacccca ataaccttca 1920 ccgaggaaga tctaaggttg gaaagctacc ctcacacaga tgccttggtc ataacaacaa 1980 atgttgcggg ttgaggagta ggcaggatct tagtggattc agggagctcc atagacataa 2040 tatttgctgg aaccttcgac caaatgaagc tcagcagaag ccaactccaa ccttcggagt 2100 cacctttgat cgggttcgga ggaaagcaga tacatgctct ggggaaggtc gccttgcctg 2160 tatccttcgg tacatcggag aacgcaagaa cagagtacgt caccttcgat gtggtagacc 2220 tgcactaccc atacaatgcc atattcgggc gaggattctt gaacaagttc aatgcggccg 2280 ctcacatggg atacctatgc atgaaaatcc cggctctgca cggagtgata acggttcacg 2340 gaagtcaaaa ggaggcaagg aacatagaga aagcgattta caagtccttt cggaacgtaa 2400 actccgtgga ctctacgcaa caggaagctt cccagccacc agacatgcca aggggtaaaa 2460 cagacctggc cgatcaggag gaaacgaaat gtgtccctct gcaggaggcc gttccagata 2520 ggaaggtcac catctccgcc accctcagta gagaggagga actcgatttg ctggacgtgt 2580 tgcaaaagaa tcaagatatc ttcgcttgga gtgccgctga cctacaggga gtcagcagag 2640 atatcataga gcattcgctg gacatcgatc cgagaatgag accaaagaaa cagagacaga 2700 gaaaaatgtc tgaagaaaga accttagccg cgaaggcaga ggtacaaaga cttctggacg 2760 ccaaggtcat cagagaggtc atgtacccgg agtggctggc gaatgtggtc ctggtcccca 2820 agaagaatgg taaaatgaga atgtgcatag acttcacaga cctcaacaag gcttgtgtca 2880 aagactcctt ccccttgcca agaatagata cctccgttga caaagccgct ggttgccaga 2940 gattttcact actggattgt ttctccggat accaccaagt ttggctcaaa aaggaagacg 3000 aggagaaggc aagcttcaca accccattcg gcacgtattg ctacaccaga atgccagaag 3060 gtctcaaaaa cgctggagca accttctcca gaatgatggg gaaggttcta ggaagtcagc 3120 tacagagaaa cattatagcc tacgtcgacg atgttgtcgt catgagcaag cgcaaggagg 3180 accatatcaa ggacctgcag gaaacctttg tcaaccttag atctgccggg ctgaaactta 3240 acccggagaa gtgtgtgttc agggtcagca agggaaaaat gctgggatat atcatcagct 3300 ccgaaggaat cagagctaac ccagacaaga caaaagcaat catgtcaatg tcagaaccct 3360 caaacaagaa agaagtgcaa aggctgactg gccgaatagc agccctcaac agattcattt 3420 caagatcggc aaaacggagc cttccattct tcaaagtgct gagaggagaa ggtaaaacag 3480 aatggggtct ggaacaatca gaggccttca ggcagctcaa gaattacatt gcgaccaacc 3540 tggtgataac agtgcccgag ccagacactc cactactact gtatgtggct gcctccgagc 3600 acgccgtcag tggtgttctg gtgcacgaga caagcgacag taagggaacg gtgcaaagac 3660 ccgtttacta catattcgaa gctctgtcag gagcaaagtt gaactacacg gagatcgaaa 3720 aaatcgcgta cgcagtcctg tgtgcatcaa ggaaactcaa gcattacttc caaagccatg 3780 agatcaaagt acccacttca cagccattgg gtgacatcct taggaacaaa gaggcttccg 3840 gacgtatagg aaaatgggcg gccgagctat catagtttga catcacctat gtccctagaa 3900 cctccatcaa atctcaagcc ctggctgact tcatggcaga ttggacacct tcgaacaaaa 3960 aagaggagaa ggtagtcgac cagccatgga cactgtacac agatggcgcc tgggggcagt 4020 caggagcagg agcagcagcc gttctgatcg cgccatccgg actcaggcta aaatatgctg 4080 cgagactcga attcaaagca acaaacaaca tagctgagta tgaaggtctc atcctcgggc 4140 tgaacaaagc taaggcttcc ggagcaaaaa ccctgctcat caaaacagac tcccaggtgg 4200 tggcaggaca agtggagaag gaatacctag cacacaaccc ggagctggca agatatctgg 4260 ctgttgtaag aggtctggag agaaggttcg agggattcac tctgcattac attcctagag 4320 ccgataacta cgaggcagac gagctagcaa aggcagcagc caacaacacc cccttgccag 4380 aaggaacctt ctaccaaatc gtcgcagcac ccgcaactga atcattgccg aaagcttttc 4440 gctcagttct gctgacagaa ggcgaggatt ggaggcaagc agtagttgat tctctcaaag 4500 gcaaaacggc tgcagatgac gaagcattag ccaagaggat ggaggcaaga gcaaggaatt 4560 acaccaccat tgacggggtc ctgtacaaga aaggcgtagt ccaacctttg ctgagatgca 4620 tatcacaaag cgaaggcaga gaactcctga aagagataca ctctggaata tgcggttctc 4680 acattggacc tcgcgcatta tctgctaaag cattaagaca aggcttctac tggccaaccc 4740 acatcaaaga tgctcaagaa atagtgaaga catgcaaagc ttgccaaacc ttctcaccaa 4800 ttcaatcagg accttcagca ctaactcagc tcataccagc atcatggccg ttgcagagat 4860 ggggaatgga cctggtagga ccaatgccaa ctgcccaggg gggaaacaaa ttcgccgtcg 4920 tggccatcga atacttcaca agatggatcg aagctaagcc actggcaacc ataacctctg 4980 aaacaatcag gaaatttttc tggcagaaca tagtctgcag attcggagtt ccaagcttgc 5040 tcacagttga caacgggaag cagtttgatt cagacagttt caaggaattc tgccatcaca 5100 taggaaccaa aattgctttc gcgtctgttt atcacccaga gtcaaacggg gccgtggaga 5160 gagcaaacag aacaatattc tccgcaatct ccaagacctt actcaaccta cgcaagggga 5220 aatgggttga agaactaccc agagttgtat ggtcacataa cacaacagtt tcaagaacaa 5280 ctgggttcac tccattcaag ctcttgtatg gggaagaggc aatgttgccc gaagaaatca 5340 aacaccaaag cctgcgttcc atgaagcagt agttggctga agatgaagag tactgcaagg 5400 aaaccttaga atcaataaga cttgaggcag tggagaacat taccaggtat caacaagaaa 5460 ccaagaaatg gagagaccgc aaggtagtac gaaaagacat acaaaatggg gacctggtac 5520 tcaggaaaaa aggagatcac ccaaacgctg gtaaattgca acccaagtgg gaaggacctt 5580 atacagcaat acaagcggga aggtcgggat ccttctacct gaaagacctc gaaggtacaa 5640 cctccaccca cacgtggaac gtcgacaatc tacgaagatt ttacatttga gtgtaaggat 5700 gacccccgca aaataagcgg cgacatccac gtccctaaat acgcttgttt tctttttctc 5760 tctacttttt cgcactccaa ggtctgcact cttttcctca caggggtact cctaccagga 5820 ggtgaggttt ttaacgaggc agaacctatg taaaaacctc tgagatataa agaggaatcc 5880 accccagaac caaagcccaa aagtcgaaaa acagccagca acgaggctgt agcattcgac 5940 aaaacatcac gtgatcacaa ggaccctccg cagctttcat ccaaaagcta agaaagctcg 6000 gaacgtcctc aaaggtgaaa aaacaccaaa tccttagcaa aagacctagc caagagccgg 6060 gcagcaagga tagcatggcc aaaaagtgaa aaagtcctgt cctcctcagg catcacaaca 6120 tggccagaag gaacaaaacc ttcaaacctg acaaagacct gaggacaatc aggcatcagg 6180 aactatatta tttttgccaa aaggcagcgg aggtttaaca ttcacaagac agacctcaac 6240 aaaattcaca taaccttcac caaaataagg tcaaaggtat cctgctactc taagcagacc 6300 cccaacaaac aaagtgtgaa aataaaacaa aactacaata accctcagtc aggtacagca 6360 aaaccaacta ccacaacaac catcaataac tcgataataa attttaacct aacagagtac 6420 ataaaataaa tccatgaaag cctataaaac caggctcacc ttgcccccac cctcaatcag 6480 gatcagtata caaagacccg agcatcgagt gcaaacctag cagtcaaaaa gcaaaaatcc 6540 taggccacca tggaagcagg agttagcctc acaacagcaa caaaagtttg tattgcacga 6600 agcttcgtaa tactagaact gcggcgttgt gatgaacatc gaccacaaag tcgtgtacag 6660 ccacaacaga aacaatggaa gtcagactca gaggtctctg aagggtatcg cacgaagtct 6720 cgtaacgtcc cttcagaacc tccgactcag atacccgaag gttctcctcg acaacactcc 6780 acgggagtcg agcaaaggaa aaaagtagca caattcagcg gaggctcctt cgcaccaata 6840 aagtcgaagg ttctaaggcc aagaagcggc gatcctccgc gcaagaaaaa atcaacaaca 6900 ccttcgcaac atcgagcatc aagcacaagc aggccacagc aacacaaaga tccttaggat 6960 caacaccacc gtgacgttgc aatgtataaa cgttatagcg cgaaggttgc aataaaaata 7020 aagctaaaag gtgcgtagac catggccgaa gcaatggtaa aaatgtctga tctttattaa 7080 ctataaacaa aaaaagttta caaccaaaaa cgaaaaacat ccttcgaccg tcaagagtcg 7140 aaggttctaa gaccctcgca caatttttac atacgaatct ggaataagcc taagctcatc 7200 gcagtaatca cgaacaagaa aatcaactaa gtcatcaata ctacgcgtag gatacttatg 7260 gcgccaccaa tcaatcaggt aacccctcgc gtacagatct ccacgcttga acgtcacagg 7320 ggtaacgtag cttccttcga caaagtttga aggaagaaca tcctctggag cagatctcac 7380 aacctgtgca aaaaaagagc aacttcaaaa ccaactcaaa cgaaggataa agccaaaact 7440 tattacgaag ctttcgaacc tccggataac catggagaaa aggctcagcc aaatcctcgg 7500 gaacatccga cacccatcgt accctatcct tctcaccaaa gatgcgaagg ataggatatg 7560 gcggctgcgt aaaaacaaca aaccttgtca aagaaatata cacataacct acgataaacg 7620 aaaaataaaa caaaaaccac cacctaagcc ggaggccatg aacctcgacg cgcaagcgac 7680 cggacgaatt cagatcgttc gtcatctagg tcatatccaa caaactcaaa catatccacc 7740 accctcatgt tagggaaggc aattcgccag tactcccaca attcgccaga aacataaatc 7800 cctttgtaaa aaattgaaag tgtagtaatg caatgatcct gcgcaggtcc tccgccagag 7860 acctgcgcag gatcaaagtg taaaacaaag gattattcga aaacaactca atatattaca 7920 ttctcaacag tctttacaaa ttaagcaaaa cctccggcct tacttacaaa aaagcgtcac 7980 atgcatggac gcaaaaaaat actaagaaaa acctaaaaac taaaaagcct cacacctgag 8040 gcggaggagg agcagaagtc tcgggctgct ctggaacctt ggcagcagat ccctccggag 8100 ctttagcacc agcatcacaa gcctccgctt cagcctgcgt cggaggatgc gcctcgcttg 8160 gtggacgcga aggaccggcc ttatcaacct tagccttctt cttcgcaatc tcctacaaaa 8220 taaacatctt aagtgacatt gcaaaacagc aaaacagaat acaaaaagaa aaaaacaaaa 8280 caaaaatacc tcagcgcgac gagcctccgc catcttcttc gcctcagccc gcccaaacct 8340 aatccagaac gaactaatga agttccggac agatttgcgc aggctagagg tgccctcgcc 8400 aacatcctcc gccgaggcaa actcctcctt agcaactccc tcggcgtggg agcaacctcc 8460 gcgctgcaaa agtcgagcga aggagctaac cgcagccaaa gccccaaaat caacagctcc 8520 tccgacaaag tcaggtagca tgcggatatg ggacttcaac cacgctaggc cagccccaac 8580 gtcgccgctg ggcggaggag cagaggtgct gcccccaaac tgcgccagcg agtcggcata 8640 gagcccaaca atagctgcag cctccgcttc cgctttctgc atgcgcgtct gcagctcagc 8700 cgcagacgtc cgctcagcat caagctcctt gggaaggcgg tcagcaatgt cctccgcctt 8760 ctcggctcgc tgtagagcca agtccctagc tctccccgcc ttagtgacat tcgtgcggag 8820 gacagccgcc gaagcttcgg catcttcttt ctccttcttc aagacctccg acccagcctt 8880 gtaatcatcc ctttcctttc tcacggactc aatttcccgc cggacggaag aaaactcctt 8940 aacttcctcc gacaggcgag ccttctcagc ctccaaagtt tcattttcct tcttaagagc 9000 cccaatggct tcatcacggc aaataacctc tcgggagcac cgctcctcca aggcagcagc 9060 catgtgatga ccctgcccaa aaacaacaca tatgaaacct ccgaacaaaa aacggcgaag 9120 gaaaataaaa cgcatcacaa acatacaagg ctatggtgct catattgaac gcgaaggagc 9180 gtgtcaaagt ccatgccgcg gagcttctga cgaaaacgat ctgtaaagca aaaacaagta 9240 agaaaaaaca tcgtaagaaa cataaaacct ttggcggagg ccagagaacg aacctccgac 9300 caaggaatga acctcgcgca aggcatcagt ccaacctgag atcgaaggat cagaagcacc 9360 tgcgcaaaac caaaacaaat cttagaataa aatacaaaaa aaaaacaaac caattagttg 9420 aacaaaaaaa gaagaaactc actgggacca ggaacatcag caggcgaagg cctacttgcc 9480 agcgcagaag gcgcaggaac ccgaggcggt ggaaccgcaa gaccttcctg tgctatgcta 9540 gcacccttag ccagttcctc cgcagtggcc aaacctgcaa ccacatcctc taaaaacaac 9600 ataaaaatga tataagaccg cgataataga aacaagcaga aaaaacaaaa ataacagcaa 9660 agaaacgaac ctatatacag cgagtttata ccatctccgg ccaggcgcgg aggagcctcc 9720 gccatcttta ccctccgaac agaggcggac tctgcttcat cactagacga ctcctgcaca 9780 tcctttggcg gagatcctcc gccagcagat acctcccacg cagaaccctc agccaccgca 9840 ggattcgcct ccggcgcagg actcgcctca ggagcctccg cgtctgaaga ctcctcccca 9900 agaagagacg cgaaaggcgc gcatacagaa gaaaccgcgc gggaggcttc aacttcagga 9960 actccaccgg caggagcaac ctccgcagga gcagaagcca ccgagttaga ctcggcagca 10020 gaagagcggg cggaggaaga ctccacagga gtctccaaca caacctctgc cttgcgcttc 10080 ttcgcaagct gcttaacacc accaccaccc ttcctcttct tagcctccgc cgcaacaacg 10140 gccttggacg aatccttctt cttctccagg ccaagcagaa cctccggagg aacgacataa 10200 tcctcatact cgatccccaa ctcttcaaaa acgcgattga aacgcggcat agtcccaagt 10260 gcggacttcc gctggaggta ttccttctct gagatctttc caacgatcct ccgagcagaa 10320 acctccacgc ggtcaaggaa agattccttc gtctcatcct ccggcaaacc cgtgccaaat 10380 cgaggaaaca gcaacccctc tggaggacca aagaccggta cttgcaccat ttcaatggtg 10440 aactcgtcag tcctgcggcc aaggggccag tagtcggctg caaccatctc ctcgaccagg 10500 tcccgacctc cggagtatcg gcaagccagc gcaaaggcct tgtcgcaagc caatcgcgcc 10560 tcaagctgct cctccgacaa cggcttcgaa ggatcaacct tcgagatagg cttcaactcc 10620 ttcatcaacg atgcgtaagg gtaaacctta tcaacgctac cgtcatccaa agtcctcgac 10680 gcagcggggg tcttcacgta gaaccaggct ctcatccaat ccttctccca cttgcccttt 10740 tggcagtagg agatctcgca ccttggccca ggcattgtgc ggcgcggcat gaacgcgcag 10800 cttccaaact gcgcaatgca ctcaacacct tcggcatcct tcaccttctt aggctggcgc 10860 tgaagttcga aatacgagca gaaagtgtca atgtggggca tggctccgta ggattcacac 10920 gcccaggaaa atttgctaag ggtcagtatc ctattggggc tgaaatgctg tagctcaacg 10980 ttgaagctct ccatcacctc gcgaaggaaa tggtacggag gcatccgaag tccgcaggta 11040 aaaaagtccc tgaatacaac agcataaccc tcttcaggcg caggcaccgt ctgacccgca 11100 ggaggagcct tcgcacggcc atccttgaaa aaccgcgctt caaccatgtc agcgatatcc 11160 tccgtcctca cagtcgactc cccaaactca aaggtaattg cagccatctc ctcaaactcc 11220 ttcgcgctga ttagatcacc aacagaagct tcgacgtcag acaacgtctc ctccagatct 11280 tgagctgctg ccacctcaag catccactcc ccaaacctcc gcagccaacc cccagacctt 11340 acactaagaa aatttcgcaa aggaccagaa aaatctgacc tcgaaggacg cggcggagga 11400 agatgagcca ccgtagatcc tccgacaaaa cttatgaact aaacacagca gtaacacacg 11460 cgagcagtgc gagcaactca gaaagcgaga tgtggcgaag aaaaatgtgc aggaaatgag 11520 cggcaggggt gagagctcag agcaccccag catccctttt tatagggggg ggcctgcgac 11580 cgcgcggccg ttgcgattcc ccgcgcccaa cggctaaaac cggaggactc ggcctgaccg 11640 ttgcgattca ccagcccaaa cggctaactc caacggctat aatacccttc acactctaac 11700 gcgcgaagga ttacagccta tcagaacaac aatgatcgaa ggatcctgtc aaaacaaatg 11760 gctaagtaaa agaaatattt tttcgaaacc gctaacaaac acatcctgcg caccaggggg 11820 aaggcagacc atgctcgcgg cctccgaagc gtggcatgtt tttgagcaca tggaccgcag 11880 gagtgccatt agcccaaaaa gggggaac 11908 // ID ERIKA1_TM_I repbase; DNA; GRAS; 5629 BP. XX AC AF326781; XX DT 16-OCT-2002 (Rel. 4.3, Created) DT 16-OCT-2002 (Rel. 4.3, Last updated, Version 1) XX DE Triticum monococcum gypsy-type retrotransposon, ERIKA1_TM_I, DE internal region. XX KW LTR retrotransposon; target site duplication; GYPSY superfamily; KW internal region; TREP234; ERIKA1_TM_I. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RP 1-5629 RA Wicker T., Stein N., Albar L., Feuillet C., Schlagenhauf E. RA and Keller B.; RT "Analysis of a contiguous 211 kb sequence in diploid wheat RT (Triticum monococcum L.) reveals multiple mechanisms of genome RT evolution."; RL Plant J 26(3), 307-316 (2001). XX RN [2] RP 1-5629 RA Wicker T.; RT "Direct Submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AF326781; Positions 108563 114191. XX CC Internal region of gypsy-type ERIKA1 retrotransposon. CC 5bp target site duplications. XX SQ Sequence 5629 BP; 1575 A; 1306 C; 1344 G; 1404 T; 0 other; acactccacc actacgaaaa gatctcgtcc cgagatctag gactgaaaga actccgggta 60 ctcagaacgg aggtgatcct cgcgttccca ggtagcttca cggtcggaat ggtgtgacca 120 cttgactttg agaaacttga ttgccttgtt gtgggttttg cgttcagtct cttcaaggat 180 tgcaactggg tgctcacggt aggagagatc ttcttggagc tcaatgtcct cgaagttgac 240 ggtgcgctca ggcgtcttga agcacttacg gagttgcgag acgtggaaca catcatgaac 300 attggcaaag gttgcaggaa gctcgagttg ataggcgagg tcgcctctct tgctgacgat 360 cttgaaaggc ccgacgtatc ttggggcaag cttccctttg ataccgaagc gacgagtccc 420 tttcatagga gagacgcgga ggtagacatg atctccgatc tcgaaggcca aatcacagtg 480 cttgctgtca tagtagctct tctgacaaga ccgggctgct ttgaggttat cacgaatgac 540 cttgcacatt tcttttgcct ctgtgatcag gtcattaccc agcagctgac gttcaccggt 600 ttcagaccag ttgagaggtg tacggcactt cctaccgtac aaaatttcaa acggggcctt 660 gccggagctt gcttggaaac tgttgttgta cgagaattca gcataaggaa ggcaatcctc 720 ctacttcatg ccgaaggaga taacacaagc cctgagcata tcttcaagaa tttggttgac 780 acgctcgact tgaccgcttg tttgagggtg gaaagcagtg ctgaaacgaa tgctggtgcc 840 catggccttc tgaaaagaat cccagaactt ggaggtaaag atgctgccat ggtctgaaga 900 tatcacttgt ggaataccgt gcagagagac aatgcgggag gtgtagagct ccgccaattg 960 agctacagtg attgactctt tgataggcaa gaaatgagcc actttggtca gcttgtcgat 1020 gacaacgaat atagcatcat tgccacgctt ggacttagga aacccagtca cgaagtccat 1080 ttcaatgtgg tcaaacttcc attctagaat ggcgagaggt tggaggagac ctgctggcct 1140 ttggtgttct gctttcactc ttctgcagac atcacattca ttcacgaatt gagcgatctc 1200 gcgcttcatt cgagtccacc aataagtttg cttcaggtct tgatacatct tcgtgctccc 1260 agggtggatg gagaggagag agttgtgagc ctcattcatg atcactttac gaagttctcc 1320 tttgggcaca accattcgat cctcgaagaa gagagtgtcc ttgtcatcaa gtcggtagca 1380 cttgtacttg gactgactct ttgcaatacc aatcttcacc tttttcacca tagcatcaag 1440 aagctgggct tggcgaatct ggtcttccaa ggtaggagaa acttgaaggt tggcaaggaa 1500 accttgagga acaacttgca gattaagttt gcggaaagct tcacacagct cgggttgata 1560 aggcttgaga atcagactgt tgcaatatgc ttttctgctc aaagcgtcac aatcacatta 1620 gccttgcctg gagtatactc gatactcgga ttgtactctt gaatcatttc gacccatcga 1680 gtctgcctga ggttgagatt aggctgagtg aagatgtact tgagactttt gtgatcagtg 1740 aaaatgtcca ctttccttcc caagagaaga tgtcttcaag tcaacaatgc gtgcacaact 1800 gccgccaact caagatcatg agtggggtag ttcttctcat ttggcttcaa ctggcgagag 1860 gtataagcaa caactttctt ctcttgcatc agtactgcac cgagaccttg gagagaggca 1920 tcacaaaaga cctcgtacgg cttggtttca tcaggcggag ttagaactgg agcagtgatc 1980 aatttctctt tcaaagcgtt gaaagcaaca tcacactccg gagaccaaac gtacttgacg 2040 tgcttctgaa gaagatttga gagaggcttc gcgatctttg agaagttttc aacgaatctt 2100 cggcaataac ttgcaagacc gaggaagcta cggagttgct tcacattctg aggaggttcc 2160 caattaacga ttgcagacac cttctcagga tccacggaaa tgcccttggc agagataata 2220 tgcccaagat aaagaacctc atcgagccaa aactcacact tggagaactt ggcatagaat 2280 tgatgttccc ttagcttgtc aagaaccaaa cgcaagtgtt tggcgtgatc ttccttgttc 2340 ttcgagaaaa ccaggatatc atcgagatag accaaaaaaa aatcgttggt gtaggggttg 2400 aagatgaagt tcatcatgcg agagaacgtc ggaggagcat tagcgaggcc aaaagacata 2460 acagtgtatt catatgaccc atagcttgtt ctgaacgccg tctttggaat atcttgttca 2520 cgaatgcgaa tttgatgata acccatacgg agatcaagct tgtagaatac ttgggcaccc 2580 ttgagttgtt cgaatagctc attaatgttg gcaagtggat acttgttctt gatggtcttc 2640 ttgttcaatg gacggtaatc aacacaaagt cggtccgttc catccttctt cttcacaaaa 2700 agaacaccac aaccccacgg agaagtacta ggccgaatga ggcccatcct ttcttgcaca 2760 tcgagctgtt tcttcaactc cttcaactct tcggggccga gcttgtaagg ccgtttgcac 2820 accggttccg taccgggctc aagttcaata acgaattcaa caggccggtt tggaggcatg 2880 cctgggagtt cttcagggaa gacatcttga tactcacaaa caaccggaat ctgcgaaata 2940 gcatccaatt cacccttttc attgagagag aataactgga tggtattatc ccgagcagca 3000 aaaacaatga catcttcaga ggaatgagtc agttgaatct gcctggctgc acaatcgagg 3060 tgagctttgt gtttagagag ccagtccatc ccaagaatga ggtcgatatc agaattacca 3120 agaaccaccg gagaagagag aaacttgtaa tcgcccaaag tgatagaaat atcgagagca 3180 accaaacttg aagtcaacag cttgcctgga gaaacaactt gcatggcttt gggcataatc 3240 tcagtatcaa cattgtgctt cgatgcaaac gggcatgaca aaaaagaatg cgatgcacca 3300 gtatcaaaaa gtacttttgc gggaacattg ttaacaggaa ggttacccat gatcacatct 3360 gacgaatcct ctgcctgagc tgcgttcacc atattgacct tggcgtgctt gggattatgc 3420 ttgaccacag ctgtacttgc cgatctgaca ggaggaggag gaggaagacg cctctggttg 3480 aaacacttgt tggcgtagtg acccttctgt tggcacttgt tgcacgtgac ctctgagagc 3540 ggacggtggt acggagcact cgatcttgga gcttgagacg aagttttgtt ctgcaagcct 3600 gggttgggtg ggtgggacga accactacca cctttgctct tctactgata cggctgacgg 3660 aacggaggag gaggaagcca atacttctgc tgcttggcca cttgagtaga ggacgaagac 3720 gaagtgtctc tgactcgctt cctggaagca tcacacctga gctgagcagc ctcttgcttc 3780 agtgccatgt tgtagaactc atcgtatctc agcggctcga agaggacaag agcgagctga 3840 atttcttcac gaagaccacc cctgaactga tagatcatgc tcttctcatc aggaacatcc 3900 tgcttggcaa aacgggcgag cttctggaac aacttgttgt agtcatagac agacaaagag 3960 ccttgcttca gattgcggaa ttcttcacgt ttgctttcag tcacactttg aggaatgtga 4020 tgagcgcgga aatcacgacg gaaatcatcc caagtgatca aacgtccacc tctggaatcc 4080 cggtactgct gaaaccactc tgcggcctga tccttgagct ggaaagacgc gaacttgaca 4140 aaatcttcag gtctgacgtt gctacattca aaatgcttgc ccagatcgac taaccaatca 4200 tcagcatcgg tagcctcaac gcagttactg aacgtctttg gaccatttgc gaggaactga 4260 ttcagagttg caaactggtt ctggttgctg ccttgatttg cttgactgct ttaattccgc 4320 tcttggatga tttgcatgat cagctgggta tttgcattag tagcagccat cacagcctgc 4380 catgcttccg gaggaggcgg aggtggcgga ggatcttgat tctggttctg actggtgctc 4440 ttagcgggag ccatcctgaa gaggttgacc accattagca cacaaataga gaaatataga 4500 aggtgaatcc aacggaatga aaattgcaac ataagtcttc acatccgaac aaaatgaacg 4560 aatgcacttc tcttgaagtg gtcacatgtt cctaaattgc gaagccacga agaatcatgt 4620 agaagaggta catcaacgag ggatggaatc aacatatgac gtcggagaag aacgaatacc 4680 acaactcgaa ataaacccaa gggttggctt gcggaataag ccgaaacaaa cacatgatag 4740 aaattccgtt cgaagtgttc gtggtaggac ctacacgggc tcgaccgtac agcaccatca 4800 tgtacaaggc agtgcacatg acatacgaag cgtccccgag tcagcatagc caaggactct 4860 ttaagacaca acgaggccac tgtaaaatcg accgtgaata ggcaaaccac tagacgtcga 4920 accccaattt catatcgcac atctgttgga aagatatcct aaggctactt gaattcccac 4980 ctatgaaatt cccgaaactt tccggttatg taatcaggtg ttgaggatac aggggaagca 5040 taatatctca cccaagctag caaatcctac atccagctgc atccatcctt caacacataa 5100 ccaagaaacc ttcggaaacc atctatctca accttcgaaa agcatccgtt atacaagtta 5160 tggcgatact cccgaactcc cgccccagta ctgggtggcg tcgaggttat ctcaccaacg 5220 aactgcataa aggagatttt cgatgttgcg cacatatctc aagtatgcca gaattgcaac 5280 gatagaatta tgatgacaac acctcagagc tcaactcccc gggacacttc cactaaaccc 5340 ctgacaggag gcaccaagac agtattctca tcataagcca tcggaacaaa actaagatac 5400 tcgcgtgatc ctaaattttt ttttagtgaa atttgagaag agaaaagtca aaactttacg 5460 tcaggatgcc ttaccagagc gatgaggaga ctgggaagta aaaagaattc ctaagctctc 5520 cgatatataa ttcctaagga ctcaaaacat ttttctagac acaactcggc tactaaaaac 5580 gatcaagcaa tggggctcct aaggtcgggg aaggctctga ttaccaact 5629 // ID Copia1_HV_LTR repbase; DNA; GRAS; 323 BP. XX AC . XX DT 06-FEB-2003 (Rel. 8.01, Created) DT 06-FEB-2003 (Rel. 8.01, Last updated, Version 1) XX DE Copia-like LTR retrotransposon. XX KW Copia; LTR Retrotransposon; Transposable Element; KW endogenous retrovirus; Non-LTR retrotransposon; COPIA superfamily; KW TREP1162; TREP730; Katarina; HORPIA; Copia1_HV; Copia1_HV_LTR; KW Copia1_HV_I. XX OS Hordeum vulgare OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Hordeum. XX SQ Sequence 323 BP; 100 A; 71 C; 73 G; 79 T; 0 other; tgtagatgtt aatcatgttg ctcatgtagg attaggaaag aaagccaaac cgagtcctag 60 tagtattagg attcctagtc ctagtctatt tccgtaggcc cttggtggac gtgtataaaa 120 gacaccctag gggtgttgat tgtaacacca gaaaaacgaa aagcaataca aagcaaaagc 180 tcgacacggg cctttagcca tcaaatccat cgatcagttt ttattcgtgt cgctagttac 240 gcaagttccg tcaagtagcc ggccgaagca agaattgtgt aggcacgcct gtacagctac 300 atacgcacgt tcaaaagcca aca 323 // ID EnSpm-14_ZM repbase; DNA; GRAS; 14694 BP. XX AC . XX DT 19-SEP-2008 (Rel. 13.1, Created) DT 28-OCT-2009 (Rel. 13.1, Last updated, Version 2) XX DE EnSpm element from Zea mays. XX KW EnSpm; DNA transposon; Transposable Element; transposon; TIR; DNA; KW CACTA; DTC_Norman_consensus-1; EnSpm-14_ZM. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-14694 RA Bao W. and Jurka J.; RT "EnSpm element from Zea mays."; RL Repbase Reports 8(10), 1195-1195 (2008). XX DR [1] (Consensus) XX CC The consensus sequence was built from several copies. This CC composite element contains Copia sequences (7226-10783). CC This sequence was derived from sequence data generated by The CC Maize Genome Sequencing Project. XX FH Key Location/Qualifiers FT CDS 1304..3562 FT /product="EnSpm-14_ZM_1p" FT /translation="MVVFCSSVGMDIGLVKRLLRYSKGSDPYLAGVEKFLE FT FAFKDKPEGIKIYCPCQTCVHTTVQTRDDMYGHLVCNGILENYDEWNFQGN FT VSVQHTSSLEPNSNIDERYVNIDQLIQDAVGHLYDDTPMTDGQESVQGPNI FT EAQQFYKQLEDSKRPLWIGCELTQLTLFVLLFNIKSMNKWSNKSFGDLLEV FT LHMAIPNGNELPKNFYEAKKIISKFGLGYKNIDACPNNCQLYWKEKKNDDF FT CAICKVSRWKDKDPTSVLTKKERKKATPCKVLRYFPIKERLKRMFMCRETA FT SLLRWHDEERIKDGALRHPADAPVWKRFDEKFLGFAAESRNIRFGLATDGF FT NPFGMMSSTHSCWPVILVVYNLPPWLCMKDHNLMLSLLIPGPKSPGDRIHV FT FLEPLLDDLKELFLTGLYTYDASRDESFTMRGAVLMTISDLPGLGMLASHM FT VHGKFACPPCGENVWTKQLKNGRKSCFMGNRQYIDLDHSYRLDADSFDGTI FT ELRTKPKTYYDRPILDEIITLGDFKNSKTYKSVSSLFKLPYWDDNILRYNL FT DVMHIEKNVFDNCYGTISNLDGRTKDNLQARLDLVEMNIRPDLHPQEKPSG FT KFYLPPALFAMSKSERRAFCDFLRKVKVPDGYCRNISKCVNVTEGKIVGLK FT THDCHVLMQQLMPIGLRGLLPDDITAVIFELSAYFRGICSKVLHVNELDHM FT EKSIGITLCKMEMIFPPGFFTVMVHLVVHLATECKLGGPVNYRWMYFIERY FT IF" XX SQ Sequence 14694 BP; 4344 A; 2913 C; 3002 G; 4432 T; 3 other; cactacaaaa caaaccccct tatggcaacg tatacctagc aacgtatagt tatatgtgtt 60 ggaagtgatt aggttgcaac acttgttaca tgttgcaagc cacattcgtt aataataatg 120 gtactagcaa cgtttaacat gcgttgcaaa ctgcatccgt agagtaacta cgatcacgac 180 aacgtttacc atgcgttgca accgtatgcg tagagtaatt tgaatggtgg caacatttac 240 atctgttgag taattttggt actgatgagg caataatgaa actgtgttgt ttattttttt 300 aatgaagcat agtggtatga tacttaattg tgcaaaaata tagaatgaga aattgaacaa 360 caaacatgta gaatgtaaca aaaggcaacc aactcaagta tgaagtcctt ttggtccact 420 tttgtattgg tgttttattt tattaaaata tttgttgcat cctttttgtg attttactta 480 tcaaacaccc tctagccatg tgaaaatagt agttgcgatt tgtcaaggca cttaaagtta 540 tatatttttt gtaattttgt ttattcggca aaaaagagct taaagtttta tatttgttta 600 ttcggcaaaa aaaggccttc agcagccttg aactcaagac caactgttca acattaacac 660 cagctaacca acagacccta gtagatttgt atgtatggat ggcacttcag tttcttataa 720 caattcttgc aatccgctcg gcctccctag atccttggaa gaccaacaat tccgcgctgg 780 atcccagaaa tccacgctgg actcggcctc cctggatccc agaaatccgc gcctccattt 840 tctggccgcg tccggctgcg cctgccaagc tcgctgtgtc cattttctgg ccacgcccgg 900 cgccgcctgc caagcccgcc cacacggcca cacccaagca cctataggcc gccagccaca 960 ccaacgccct gctggccgct gcgcaccacc gcctcctcaa aagtcagcgc gcgccttctg 1020 taggacagcg agaggagacg aggaatagga tcgcgccggt gtcccacagt gaaggacgtg 1080 atccccacga cttcattaag gcctactccc cgccacaagc gctcaggcaa ggtatccctc 1140 tcattcccca tggagatatt ggtgtgctgt gtagacatca ttatgtgctg aaactgacta 1200 ctcatttact caatggagtt accaatgtct caaagatagc tatctatgaa ttttggatca 1260 atgtattgta gttacgtttg gagaaataaa catatgtaga tgaatggttg tattttgttc 1320 cagtgtcgga atggatattg gcctggtcaa gcgtcttctg cgttactcta aaggttctga 1380 tccatatcta gctggtgtag agaaattcct tgaatttgca tttaaagata aacctgaagg 1440 tatcaagatt tattgtccat gccagacatg tgtgcacact actgttcaaa caagggatga 1500 catgtatgga catttggtgt gcaatgggat acttgagaat tatgatgaat ggaattttca 1560 aggtaatgtt tcagtgcaac acacaagtag tctagaacca aattcgaata ttgacgaaag 1620 gtatgttaat attgaccagc tgattcaaga cgccgttggt catttgtatg atgatacacc 1680 tatgactgat ggtcaagaat cggtccaggg acccaatata gaagcacaac aattttataa 1740 acagcttgaa gattcaaaaa ggccattatg gataggttgt gaactcacac aactaacttt 1800 atttgtgctt ttgtttaata tcaagtccat gaacaaatgg tcaaataaat cttttgggga 1860 tctacttgag gttctgcata tggctattcc taatggaaat gaactgccca agaactttta 1920 tgaggctaag aaaataatat ctaaatttgg acttggatac aaaaatattg atgcctgccc 1980 aaacaactgc cagttgtatt ggaaggaaaa gaagaatgat gatttttgtg caatctgtaa 2040 ggtttcgagg tggaaggata aggatcccac gtctgtatta acaaagaagg aaagaaagaa 2100 agcaacaccc tgcaaagttt tacgatactt tccaattaaa gagaggctga aaagaatgtt 2160 tatgtgtaga gaaacagctt ctcttctaag atggcatgac gaggagcgca ttaaggatgg 2220 tgcattaaga catcctgctg atgcaccggt gtggaagagg tttgatgaaa agttcctagg 2280 atttgcagca gaatcacgta atattcgttt tggtttggct actgatggat ttaatccatt 2340 tgggatgatg agctctacac atagttgttg gcctgttata ttggtggtat ataaccttcc 2400 tccatggctt tgcatgaaag atcacaacct tatgctctct ttattgattc ctggtcctaa 2460 aagtcctgga gatagaattc atgtgttcct tgagccactc ttggatgacc taaaggaatt 2520 atttctaacc ggcttgtaca catatgatgc atcaagagat gagagtttta ctatgcgagg 2580 ggccgtgctt atgaccataa gtgatcttcc tggtttagga atgcttgctt ctcatatggt 2640 tcatgggaaa ttcgcatgcc ctccttgtgg tgaaaatgtc tggacaaaac agctgaagaa 2700 tggtcgtaaa tcttgtttta tgggaaatcg ccaatatatt gatcttgatc attcttatcg 2760 cttggatgca gactcatttg atggaacgat agagcttcga acaaaaccta aaacctatta 2820 tgatcgtcca attttggatg aaatcatcac acttggtgat ttcaagaact caaaaactta 2880 caagtcagtt agtagtctat tcaaattgcc atattgggat gataatattc ttcgatacaa 2940 tcttgatgtg atgcatatag agaagaatgt atttgacaat tgttatggta caatatccaa 3000 tttggatgga aggacaaaag ataacctaca agctcgtcta gatcttgtcg agatgaacat 3060 tagaccggac ctccatccac aagaaaaacc ttcaggaaag ttttacttgc caccagcttt 3120 atttgctatg tctaaaagtg agagacgagc attttgtgat tttcttagaa aggttaaagt 3180 tcctgatggt tattgtagaa acatatcaaa atgtgttaat gttactgaag gaaagattgt 3240 tggccttaaa acacatgact gtcatgtcct gatgcagcag ctcatgccta ttggtttgag 3300 gggtcttctt ccagatgata tcacagctgt aatatttgag ttgtctgctt attttcgagg 3360 gatatgttct aaagtgcttc atgttaacga gttggaccat atggaaaaat caattggcat 3420 tactctatgc aaaatggaga tgatctttcc accagggttt ttcacggtta tggttcattt 3480 agtagtccat ctagcaactg aatgtaagct tggtggacca gttaactata gatggatgta 3540 ttttattgag aggtacatct tctaactatt acatgattca tgttataaga atttcttgtg 3600 gggttgaata attcacttgt cttgcattgg ttgtaggtac ctaggaaaat tgaaatcata 3660 tgttcggaac aaagcatatc cagaagcttc aatagcaaat tcattcttgg cagatgagtg 3720 tatggtgttt tgttctaggt acatagaagg tttcgctacc aagcataata aaccatcaag 3780 gaacgatgat agtttggacc atacccaatc gaagatggtt ggacaagatt catctttatt 3840 cccttcagta gggaaatcat tgggaaaacc agccaatttt gaattaagtc atctagagaa 3900 attgcaagcg catagatatg tgttgtacaa ttgtgatgtt gttaatccat atctaaagta 3960 agtgttttgg ttaactaatg aactatgcat atagattatg aattatataa ttatatggta 4020 atcatggtat agggaacatg cttctaatct gaaacgaaag agacgcgacc gtcgcctaac 4080 tcctaaagat attgagcaga tacagaataa agaatttcca gaatggttta gacaacatgt 4140 aagtagccta atctgatatt tatattgaat ggaatttggg ttttcttaca tgtataaata 4200 tacactcttt ttgtgtgtct acagatcttg catttagaag aaaaaaatgg acccgacagc 4260 attaacgaag acattagatg gttggcacga ggtccattgg agtttgcaag aagacataga 4320 gcatataaca tacgtgggtt cagatttagg gccaaaaggt atgataaggc gacacaaaat 4380 agtggagttg ttgtcactgc aaagacctct agctattctt cagctggtga taataagcct 4440 atacttggag atattttgta ttatggcagg attcttgata tcatagagat cgattattat 4500 ggaagatttt cagtggtact gtttaaatgt gaatgggttg atgtcactcg aggaaaggga 4560 gttaaaaagg ataagtttgg cttatccctt gtgaatttct cacatcaaat tcacagaggt 4620 gatagaattg agcatgaacc atttgtgttt gccaatcaag ttgaccaagt gttctacttg 4680 gaagatcgga cgaaccctgg gtggtcagtt gtcttgaaga tgaagcccag agatgtatat 4740 gacatgggag aagattggaa tgatgtacaa tctgaacctt ttcatgtcag caagcttggg 4800 gacctgttta agaatgcaca cgacaaccat tcatggacta gaagtgatat ggaaggcaat 4860 acggtagatg gaactgctaa agaccatgac attggtagtg atatagaaga tgagtgctaa 4920 ataagaatac tccatcaggt acacaaagtt tctctttctt ataatctgaa ccatttgggt 4980 ggtctgcaaa tacacatcta ttagtgtttg tcttccttgc ttattttaaa ttcaggtaat 5040 tatgcagtgc agaaatttag gtttcttgat ctacatatta attgaccaat gctgaataaa 5100 ccaatgctga atacacatct aatagaagca tttaagtatc aaaattttgt ctgtagtgaa 5160 tgcaaattgt tggaagcaat tgcagtagag ttatgtttta gttttttcga tggaaatcaa 5220 catggacacc agggatcatg tggctgtcaa ggtcctcgac aaggcaaagg ttcacaagaa 5280 caaactagct gaacaggtag actgtcatca agactttaac tatttgcact agtacttcct 5340 tagatttcac tgttttccat atatctgaac tgcatagcaa atcagaattt cgtttttgtc 5400 aagctgaaag aaactgtctt ctgttctgga ttcagtttat gtctgaaatc aatctgaaag 5460 aacaacttaa ttttttttca ttcctgagag gcctgcatgc ttatatgtgc tgtttttctc 5520 tttttgtagc tcaaggaatg tagctcaaag aacctgttgt tgtgcagatc tccctagcaa 5580 atacaagcct agaaagaagc attgcttgac cgcttcgacc atcggcgctg gtggcagcct 5640 ggacaaagct ccttgtcgaa gcaccaagac gacaagactc atcaacagcg agaactagga 5700 gtatagacag atggtgtgga gatctcttgt acaaatatga ggacaaattg tagggcattg 5760 aactaccgcg tagcttagtg ctgactgtta gttttggggt gcttcctttt caatgatgtg 5820 tttgctgact gttacagttg ggctaccagt ttgctaatta tcatttgtgt cgatgctgat 5880 taatgtgaac tctatgctga acaccttgta catatatgag atgttgatta tgtgcatccc 5940 agcgtactcc catcagcagt tgtcatgtct tttctaaaaa ttcggaaggt gtcactctgc 6000 tgttgcttca aatctgtttc tatttgtttt ggcaagattg aaagggttga ggatatctca 6060 tccagtttcg agtgtcactt ggctgaacct tctttgctca gcccccgttt tcttttagac 6120 ttatttcgag tgtcatgaaa ctgtggcaaa tgaacccccc tttaactcag atcttcttta 6180 gcatattaca caacaaaact agtttatctt ggttatcaga acacaagcag atggcacacc 6240 attatcttca gttatgggtt ctgaaaatgg ccaggacaca cctcactact ccaagccttt 6300 taacacaagt gagcagggta taagttacag gggcccaaga gttatagtgc ttcaaagtgg 6360 ggtaaaaata caaaaattca gattcagcta tctgaaccaa attcagtttt agtaaactgc 6420 accaagtctg aaatttttga aaccgaccaa ccccactttg gaccactttt tcactcagtt 6480 gcatatggtt ttaggtctac catacttaat aaaagttgtt ctcctatagt tactcttcaa 6540 gttttctata ataacctttt gccaaaagcc cacagatcaa aagttacagg ggcccaaaaa 6600 caagcaaacc aaactatttt cagctgcacc aaaactgtac caaatctgaa atctgcaaat 6660 tactccaaat gtctatcaaa aacttgaaaa tcttcacaca tgaaagttgt ttaatttgaa 6720 acactctaca actttggtat tttgattttt ggaaaaatat ggctagattt taaattccac 6780 ttttgggcta aaccttttct tctagggtta attagatgtg tgccattaca ttttgtctgg 6840 ttttgacata tatatgtttt gtaaatagac tccacaatat tatttggatc tgcaagtctg 6900 caactttgat gagcaaaatg cctgtacaga tagatgtttc agctacttgt actagcacaa 6960 gatgaacttg tgcagattca gcatacatat gtttcagcta aaacatgaat tatcaatcct 7020 taaggtagtc tgccaactaa tgagtaatct gttgtttggc catacccttc gaaacaatcc 7080 agtccacgaa gaagggggct cgtcagctgt catcgttgcc gagccacaac ccctgatgca 7140 acagcttcga cttcaccttg caaagcccca tcttcacccg cataccagac gccgagaatc 7200 aaaagcaacc atcgaaggcg aagctgaggc cgagacaaac ttcaatgcga cgccttcagg 7260 aagggagtga cgtcggggac gacaccgtcg cgagtccgag atggaccagg ctttcgccca 7320 aggaagaaaa tgttggggaa tacgacgccc ccaacagggg aagcggcgcc caagggcgtc 7380 gccgtcgccg aggctctcgc ccaagaagcc cccagcacca acgtcaggcc aagagctacc 7440 gtcgtcgccg tcctccatac catatgcgtc acacaggcac gtgccagagc cgcacccagc 7500 agccgatggc actagcacac acggccaccg aatctagatg tcgccgagca ccctgccacc 7560 ttacgccgtc ctggttgttt ggtccttacc ggttgtttgg tccttaccag taaggtttgt 7620 tctagtatct atacttacat gtgaagctca ctgaaccggt tgtttggtcc ttaccagtaa 7680 ggtttgttca gaacacttgt ccgtcgtcac aaaacaccat tgtggaccac cccatcatcg 7740 accgagctgc tcacggtttc tccagacaag tttaggtgag caccatgact tttgtacgcc 7800 ggtgaggctt tctgtatttc tgaattgcac gctaccgtat tcaaactctt ccggttaccc 7860 taccaggatc ccaatgtccg tcgtcgccgt gatctgggca gtctagacta tttgaatccg 7920 attcgcttac gggttaggtc gggccgggct cgggtgacgt ttaagaatgc aaatccttgc 7980 cggagataac ctgcgtgggc ttgtcgtgag cgcgcaacct cgtgcccggc ttagggtcgc 8040 cggagtcact atcgtggact tgagtttctg aataagcaaa aagacaggga tctcagtgct 8100 aatgtcagtg aaacaatcaa atattacata ggacctttat tcggttagct gatgcaacga 8160 gggtaattgc gcaaaattgc acagcgctgg cgcgggtgga tggcgcgggg ccagttttct 8220 catgtgttcg tggggcgagc gggtcggttt cggcccagtc acttccgctc aacaactcct 8280 gttttttaaa gtttatgttc tggattggtt attgtaatat ttgcaacttt gcgtgaatgg 8340 tccttggaaa tgaacgagtt catcgaaact cggcacctcg agtaagttat ccgatccact 8400 tacatatcta tccgaggcct tgagggcaag gattggtgta cgtgggcccg ataacttggt 8460 tgggttgtga cagcgatgat aaatccacta aagaagcaaa acaaatttta ttttgatata 8520 gagagagtat tataaactat acatgtgatg gttgcttcgg tagagagaag cttattaaaa 8580 ttaaattttt tatgaactat ttatggtcaa caataactca agagaggtta aatggcttgg 8640 tgattctata tatcgaaaaa aagttgttgg atgaggcttc tatatcgaat ttcgcactgg 8700 gcccctgaaa agccaggaac gaccctgctt gatctgcttc aagtgtttca tcaatttatt 8760 gcgcgacggt atcaattgaa atgtacatta atattataat tgtgtaacaa atcttccctg 8820 tattatggtt aaaatttaac aatacaagta ttttgaatta cacaatcagt ttttagcaaa 8880 atatttgaaa accatattga attaattaaa taattaaggt attattttct gtttccctcc 8940 cattatttta tttccctcca atttatttta ctgacatact atatttccct ccgttgtttt 9000 ggatccctcc agttcttttc gtagtgggcc cactctccat agacatagca aacttctttc 9060 atctcctgca gacctcccca ccacttttcc ttcatccgcg aggggcacaa cagagggctc 9120 tccatccatc gtccaggggg ctccatccgc gccgtagtcg ctcgtccagg tcgcgacccc 9180 tctctggttc gccgccccga ccttgcctcc maccgcgccc ttgcctccca ccgccatcgc 9240 cgcctccacg gccatcacca ctgcctcgtc caccggcgcc acggcccygc ccttggccgc 9300 caccgacacg tacacggcct actttcgtgg ccgtcgtcct ccgctgttgg cgcacgctga 9360 gccggaggtc ggatatctgc caagtcgagc tggagacgga ggtcagcctc tgcctacgaa 9420 tcatcatcat cagccaacag gtgctaatct gccttttttt attcagcaag agtcgacgtc 9480 agaatcttac ctcggtccat ccaaatttac ttgcatcata tgattcttag acgaccaaat 9540 tattgtcatt gattggtctg caaatacata tggactgtta gtattttcct tccctacttg 9600 tttttaattt aggtcattgt gcagtggtaa ctggtaatgg cacggggtgg gaaacaacgc 9660 attactcgta gccatgatga gtacttgtct gaggaccata ttggagagaa aagtccccaa 9720 aaaaatgctg catcatctga acaaaacata agtaataaag aagaccattt agatagcaga 9780 agcgataatg agtcccaagg tatgcacaca ttacttgtaa taccgcacct tgtctttatg 9840 gatacttgca tatgtcattc tcactactga aaattgtttt tttggagaca taactatgtc 9900 aaataacata aatggagagg accaacttga tggcgctgat gaggttaaag aggttaaaag 9960 gcgtgggaag acaaaactta ttaatgtttg gaacattcca agaggccata gggttgtagt 10020 taattgtaat gagctgaatc agcctatcgg agaagaggca ggagtccttg caaaattcct 10080 tggcatggtt gctaggaatg gctccttgtg tagcttaagc ttcaaggatt ggagactact 10140 tataggaaag aaagatagga accataaaca aatcaataag gaggccattc ttaatcaagt 10200 aaaggtaaac tttcacattt tttcagttgc catgtagtaa tagtacactt tcacaattct 10260 tttccaattg ttatgcagaa gagatttctt taccctgccc gcatggaaac atgggtgctg 10320 cgaacaattg gagagagatg gaggcaacac aagtccaatt tgaaatccat ttattttgac 10380 ccacataaga gtcaggatgc taataatagt aatgctcctg atggtgtatt agctgatcag 10440 tgggttgcgc ttgtcaataa ttggatgacc cctaaagcac aggtacatta ctatagtcat 10500 gataatcatt tcgttattta tctgatgaac catctaattt acttttgttc ctatatactc 10560 tttgtttcgt aggatttaag tgaggccaat aggataaatt gtacaagaag aaagtcaatg 10620 catacatctg gaacaaaaag ctttgctcgg aatagagaag aattggtatt atttttgcaa 10680 ttataattca cagcatgttc tttacaaatg tcaaaaatcc atgttaatta cattacctta 10740 gttatatttt tattaacatg tttacagagg gaacaagatc ctgaaaagaa ataccctcat 10800 agggctgttt tgtatatcca tacacacaag tctaacatcg gcaataacag aaatgcacat 10860 gtggtacagt aattgcaaaa aaaatgtttc atttactttt tttcaaatcc aattgttctt 10920 ccatggtgtt tattgagtat tgttattctc ttgcaagggt gaattgaagg aacttttagc 10980 acaacaacct gatttagcgg actctagtaa tggaaaggat gcatgggaag gagatgcact 11040 aaacagaata ttaggaaagg aaaagcctgg ccatatccat ggtctgggcc ttgttccaaa 11100 tccaaaacaa gtttttgatg cctcgacatc aagccgtatg aagcatctaa atgtaaccac 11160 tttggatgaa acatccagtg aagatgtagt atcacttaga cttgaattgg aaaaacttca 11220 aaagcatgtc cagaagcaag atgatactat actagatttg caacataccg tggagcgaca 11280 gaaaaggcaa catgtaaatc caaataacct tatttctaac tcactaaaga ttgcatggac 11340 ttagcatttt tatgtcctaa tgtttttatg ctattacagg gctatccaga tgctccttta 11400 tcgccaccaa cagatgttcg tcctgctatg aaacgacaag tatgtatctc tatctctatg 11460 aaaatatata agtttactac tgtacttgct cgtacaatcc agcatcgcca tgagcttatt 11520 ttaaaaaaaa tggtgatgca aatgtctttg attcggataa gttcatacca tagtaaaatt 11580 actcttcgtc tgcaaaatag caatcctact ctacaactcc tagtggatct gaaccaaaat 11640 tctcaaacca aagttctacc ctctcaactg atctgaaccg tctggacagc agcctcaaga 11700 acgttaagtt ttaaatggta agggctccct ccggtggctc tgccacttga ggcttcggct 11760 ttggcttctc aacaacaatg gcttgtgtgg ttaggaccat tccagctaca gaggccgcat 11820 tctggagcgc acacctggtc accttggcag ggtcaatcac actagctcta aaggatccag 11880 tatatgtgtc tgctgtgaca agaactagtc tgaattgtct aaaacaattc caatgccagc 11940 aacacacact acgatggtat aggtctactc atgaacttag tgccgcacat aatagatgat 12000 gggtcctagt cacatttacc agcacagata aacatattaa cagcattgga cctctagcaa 12060 atacagttca taccatctaa ctgcataggc acagataaac atatttactc ttttgcagag 12120 tgtcacttct attgaaatct tcaatattta gggtttagga cataagatgt ttttatgtcc 12180 taatgttttt atgctattac agggctatct agatgctcct ttatcgccac caacagatgt 12240 tcgtcctgct atgaaacgac aagtatgtat ctctatgaaa atatataagt ttactgattt 12300 ttttgcacat atatctgaat cttatatata tatatatata tttccctata acagcgaatt 12360 tattgtcaac ttcgtagtga agattctagt atgtttggtg aacggaataa cacaatggta 12420 tgaatgcatt accatgaatt ccatcctagt tttaaaattt tcaagctgtc atttatccaa 12480 taactctaca ggaggatgaa aacgaagatg atgagtacga ggaactgcac tcacactaca 12540 aatgttctaa aattcaggat aaggttagta cattatgagt acgaggaact gcaatcatag 12600 atttactcca ccctaaggcc atactgaagc aatcatattt ttgtccatgt tagaaatcta 12660 gtttatatga tagtgtatac atgctgaaag tagcagcaag catcagattt cctatactac 12720 gttccatagt agttcactga tgtgtgttct ttaaatgcag agcaagccac cacagtcacg 12780 acgtgaagca ctccatgcta gtagagtttc tgcatcaata aaggtaaaaa caacagtact 12840 aatgcagcca aggtgatcaa tgtggtcctt ttgaaactca gtgtastcta cacgtctcgg 12900 aaatcctcta attatgcacc aaataagaac catcaagtaa ctatttatta gtaaaaattc 12960 ttatgcatcc tgcatattta tagctacttg ctaaccacta acatccaaaa ttcacttgta 13020 ggtttccaca gatattttct taaagagcac aagatatcca aacaggaagg ttgccttagg 13080 cagagtactt agccaggacc ccaaaaccaa agttggagat gttgctttag gcaaagaatt 13140 ttggatggtg cgtgttagtc tggtatctgt gcgcgatgaa ccactaataa ggccatataa 13200 caacttcaag gttcttggac aagtaggcaa taatccaatt gcatggcctt caagttgtgt 13260 aagttcatca cttcacttaa caagacatta ttctcctcat tattgcattt ggttaaagta 13320 ttctaattca ttccttttgt agattgaaaa ggttaactga taacatggga tgaataatag 13380 cgccgggatt gctaaggtat ttaattggcc ccataaatac tctatatctc ccatgaatag 13440 agacatcaag tttgagctaa taggttagga gacatcagtg tgttagatgt acatatataa 13500 atttgggcag ggccattcat atgggaagcc ctcactgata tatgacacta ataaaaccat 13560 agtagggggg tttgtggaaa ttttgacact taataggaaa tataatttaa aaagttaggt 13620 ggtgtactca tctgtatttt ttactagtct ttgttttctt gcattctatg agatgcatgc 13680 tttgtaagga atatgatttg tttcgtgaca acaaaattga tagaatatgt attttaaagt 13740 ctaaattgat gactatgatg caccaggtga cactccactg gacagtcaac tccagatagg 13800 gctagacatg taacggtctc agaaagaagg ttggatattt tctttttaat tgaactgttg 13860 ttttaccttt ttccttgctt gcttttgctt ttgcagagct gatgaacttt agacgtgctt 13920 gtgcccatcc tcagcgcaaa acacagtggc aacgaaagat ttaaggatgc atgaatatgt 13980 acttcgaact ttctttgtaa taaacctggc gctcccatgt tgcggcactt actgtggagg 14040 tggagctttg ctatgcccct agctatcccc tccattcaaa ggattgtcat cgccagcgct 14100 agggataatt gcctctggtc agatttctag aaaaaatgtc cacagttgaa caaccttttt 14160 tttctcgtct gcaccctcta attagcagct tagtctcagt ctccatgttg tgtgcaatta 14220 tatatgtaac tatggatcaa ctttttgtaa tgcaactatt gattttaaat atatatattt 14280 tgcttatttg ccatgtgtgt gtggatgatt ccagaaatat caaatatgca ttgttcagct 14340 tgttgtaatc ttaacctcaa aataaaatat tcaaatattt ttattggttt attgcttgca 14400 acggataaaa atgttgctac aactcgaaac taaacgttgt agcatcctat gataacgagc 14460 tggtcttggg cggcaccaac acatgtaagt gttgttgtat cttataaaaa tctgttgcag 14520 tttaccaacg cttatttata tgacttacca acgtatgtac aagcgttgca gtagccccta 14580 gcaacggcag tataggcaac acataattat gcgttggtat agaccctagc aacgcttata 14640 taggcttgta ccaacacata tatgcattgc taaagggggg gtcattttgt agtg 14694 // ID En/Spm1_HV repbase; DNA; GRAS; 10534 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE En/Spm-like DNA transposon. XX KW DNA transposon; transposase; En/Spm superfamily; CACTA; TREP749; KW Caspar; En/Spm1_HV. XX OS Hordeum vulgare OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Hordeum. XX RN [1] RP 1-10534 RA Wicker T.; RT "Direct Submission."; RL Direct Submission to Repbase Update (from TREP) (JAN-2003).. XX SQ Sequence 10534 BP; 3294 A; 2067 C; 2252 G; 2921 T; 0 other; cactagtaga aaacgagcct ttggcctgga ccatttagtc ccggcctgcc tctgggccgg 60 gactaaaggc ccggccacat cgccccaatt ctcaatgcct ccctcgaggc tttagtcccg 120 gcccgtaagg agcctatagt cccggttcgt gtcacaaacc gggactaaag ggctacgcgg 180 cgggcagtgg tggtggcaac tgttcgtatc cccctttagt cccggttggt ggctcaaccc 240 gggactaaag gactaacacg tggcctgccg tagtggggcg accgttggta tacctcttta 300 gtcccggttg gtggttgaac ccgggactaa aagcctaaca cgtggtctgc cgtagtggtg 360 gcaaccgttt ggtatacctc tttagtcccg gttggtggct caaaccggga ttaaagaccc 420 aaacggtttg catcccgcgt cgtttcgggc gatgaaaagc acgaaccgaa gcgtacagtc 480 gccatttctc tgttcttctt ctctctcgcg tcgccctctc tgttcttctc ctctcttctc 540 cccttctctt cttccaccat gccaactacc tttcatgagg tggtcgcgca tggcacgacc 600 aagctccgtg tcgtgtacac gaacctgagc acggaggtgc cgtttttcct tcaacagtta 660 aaggaacgat ggtttaacca cacaccggat catgagaagt tcttcgggct tgatctggag 720 tacacggccg atcaacgcgg tgttgccgtc atccaaatat gcttcgcaag ccatgtcttg 780 atcttccaat gggggaggta agttttgagg ctttctttga tccaagataa tgacattgta 840 taagtttatt tgtttctatc atagttggtt cccttcaaat agttgtagtg aaacaatttt 900 gattagttga aggggagcac aatctaattg gaatactgtt ccataatctg aaaaatcgta 960 ttagaatcaa ctagtgttta atatgttcca ttggaatcat agttggttcc cttcaaatag 1020 ttgtactgaa acaattttga ttacttgaag gggagcacaa tctaattgga atagtgttcc 1080 ataatctgaa aaatcgtatt agaatcaact agtgtttaat atgttccatt ggaatcatag 1140 ttggttccct tcaaatagtt gtagtgaaac aattttgatt acttgaaggg gagcacaatc 1200 tgattggaat agtcttccat aatctgaaaa atcgtattag aatcaactag tgtttaatat 1260 gttccattgg aatcatagtt ggttcccttc aaatagttgt agtgaaacaa ttttgattag 1320 ttgaagggga acacaatctg attggaatag tgttccataa tctgaaaaat cgtattagaa 1380 tcaactagtg tttaatatgt tccattggaa tcatagttgg ttcgcttcaa atagttgtag 1440 tgatctctct aggttccatt gcatatgttc tatttgaatc ctaaagataa gtttctcttt 1500 agttgtagtg aaacatgttt ccttattgca gcagtatgta acatttgttc cattctaatt 1560 tgtttctgtt gcaggagtga caagcattgt cctggactca tggagttcct tcgcagcggc 1620 gtcacttttg cttccgttga cataaggaac gacaggctga agatgaggca caacttcggt 1680 attgagatac cagctcgttg cctcgttgat ctccaaacaa tattcatgct tcgacatgac 1740 aggacttcga tggcttatat ggcagttgcc ttgatcgacg agtcatatgg tgatatgaag 1800 accagtttcc caaagtatca acacaaactt tgggagaagg gcccacttga tgatatcaac 1860 attcactatg cagcaaaaga tgcatacgtt tcatacgagt tgtaccgcaa gattcgagtc 1920 gtcaactatg gccagcgtca cctcgaggaa cgtggacatt ctgatttaga tgattcagac 1980 gagtagtgtt ttgaacgtct aacacttgta tatatatcta tggtagctat tattatgtac 2040 tatttgggct agtatcatgt acttcttgga ccaatttata tatgtctagt ttctgtttgt 2100 gccattatag tttccaaatt tgaatggttt agccctttct aacttcattt gctacttttg 2160 aatggtttag ccctttctaa cttcatggta tcatgcattt cgaccacata tatatacaaa 2220 aattcttcag ttcaaataag ttcagtgctt ttcaatttca gtgtcaacta gctcaaaaaa 2280 ataagtaaat gcacgaaata taccaaatga agtcagaaat tgttgaaatt ttgtgatgtg 2340 cctttgaatg gtgcattttg aacacacaaa aagtatggag ttcaaataag ttaaaaaaat 2400 gaaatccctt tgtaagagat gagtactcgt tcgaaaccct gctacttcga gagagattgt 2460 cagttttgta cacgaagtgc atccagtttt tgtcgtagcc ctctcaactt tttaacacat 2520 gctatgtggg tgaaatgatg atagcatgcc aactttcaac attttcagag ttcatttgta 2580 gtgcttttca atttcagggt caactagctc aaaaaaataa gtaaatgcac gaaatatacc 2640 aaatgaagtc ataaattgtt gaaattttgt gatgtgcctt tgaatggtgc attttgaaca 2700 cagaaaaagt atggagttca aataagttta aaaaaaatga aatccctttg taagagatga 2760 gttctcgttc gaaaccctgc tacttcgaga gagattgtca gttttgtaca cgaagtgcat 2820 ccagtttttg tcgtagccct ctcaactttt taacacatgc tatgtgggtg aaatgatgat 2880 agcatgccaa ctttcaacat tttcagagtt catttgtagt gcttttcaat ttcagggtca 2940 actagctcaa aaaaaaaagt aaatgcacga aatataccaa atgaagtcag aaattgttga 3000 aattttgtga tgtgcctttg aatggtgcat tttgaacaca caaaaagtat ggagttcaaa 3060 taagtttaaa aaaatgaaat ccctttgtaa gagatgagtt ctcgttcgaa accctactac 3120 ttcgttcaaa ttctcaaata tgcaaaaaga atttttaata aacatagttt ttaattgaaa 3180 ataaaaaaat agataatagt ttggatagtc aaaattatta attatgaaaa taaaaaatag 3240 ttttgcatta tttattcaat ttgaaacact tctcattatc atagttttgt caaattctca 3300 aatatgcgaa aagaattttt aataaacata gtttttaatt gaaaataaca aaatagataa 3360 tagtttggat actcaaaatt attaattatg aaaataaaaa atagttttgc attatttatt 3420 caattttaaa cacttttcat tatcatagtt ttgtcaaatt ctcaaatatg caaaaagaat 3480 ttttaataaa catagttttt aattgaaaat aacaaaatag ataatagttt ggatagtcaa 3540 aattattaat tatgaaaata aaaaatagtt ttgcactatt tattcaattt gaaacacttt 3600 tcattatcat agttttgtca aattctcaaa tatgcaaaaa gaatttttaa taaatatagt 3660 ttttaattta aaataacaaa atagataata gtttggatag tcaaaattat taattatgaa 3720 aataaaaaat agttttgcat tatttattca attggaaaca cttttcatta tcatagtttt 3780 gtcaaattct caaatatgca aaaagaattt ttaataaaca tagtttttaa tttaaaataa 3840 caaaatagat aatagtttgg gtagtcaaaa ttattaatta tgaaaataaa aaatagtttg 3900 cattatttat tcaatttgaa acacttttca ttatcatagt tttgtcaaat tctcaaatat 3960 gcaaaaagaa tttttaataa acgtagtttt taattgaaaa taacaaaata gataatagtt 4020 tggatagtca aaataattaa ttttgaaaat agaaaatagt tttgcattat ttattcaatt 4080 tgaagcactt ttcattatca tagttttgtc aaattctcaa atatgcaaaa agaattttta 4140 ataaacatag tttttaattg aaaataacaa aatagataat agtttggata gtcaaaatta 4200 ttaattatga aaataaaaaa tagtttgcat tatttattca atttgaaaca cttttcatta 4260 tcatagtttt gtcaaattct caaatatgca aaaagaattt ttaataaaca tagtttttaa 4320 ttgaaaataa caaaatagat aatagtttgg atagtcaaaa taattaattt ttaaaattga 4380 aaaaaaattg aaactttgaa ttcagattga attttatcca caatttcaaa tatagtttca 4440 attttcagta agtttaggcc cgtaagcctg ctatagagag gagctcgatg gacaagctgc 4500 gacggggctt ataaacaagt gttagtcccc ctcgctgggc gaggtgggac taaacttatc 4560 gtgcaaccga ggaggggctt tagtcccggg tggaaccacg ccccgggact aaagacgccc 4620 tttagtcccg gttggagcca caccccggga ctaaagaccc cctgcttccc gcctcttggt 4680 ctgcgcgaaa agaggccttt agtcccgggt cgtggctcca ccgggactaa agggggtctg 4740 tagtcccggc tcgagccacg caccgggact atagatccac ctatataagc gggacttcga 4800 aaatttccaa cccaattcgt ccatttctct tcttcttcct ctcgttctcc tgcccgacgc 4860 ggcacaacga cgaactaacc gacgctgtca ggctgcccac cgtcctgttc gctgtcggcc 4920 gtcctcctcg tcgccgcgcc gtcctcctcg ccgtcgcgcc gtgctcctcg ccgtcgcgcc 4980 gtcctccgcg ccgtcctcct cgccaacact ccggccagta agcccccgcc ccctcctccc 5040 caacactccg gccagtatag aagaaaagaa gaaaaaggag aagagaagaa gcaaaaggag 5100 aagaaaggaa gaaaaaggag aagaaaagaa gaaaaaggag aagaaaagaa gaaaaagaaa 5160 agattattag ggttagtaat atttagaatt aggttagggt tacaagaaga ataaatatga 5220 acaaaaataa aaaaataaga ttaggaaaaa atgaaaataa gaagaggagg agaagaaaag 5280 aagaaaaagt gtatattgta tagtgtatat gcttaagtgt atagtgtata tagtgtatag 5340 tgtataagga gaggaggaat tttgctatag tgtatatagt gtatagtgta taagaaaaga 5400 agaaaagaag aggaggagaa gagaagaaaa gaagaggagg agaagagaag aaagaagagg 5460 aggagaagaa aaatgaaaat aagtgttaat agtttaattt tgctattgta tatgcttaag 5520 tgttaatagt ttatttttag caagaaaatt aatagaacta gtttattttt ttagttcatt 5580 ttacgatgcc tatcccgcat cctcgtcgtc gactcggcgg aggacacctg cttgatcaga 5640 ggggccctat ccgggactgg gctccgcccg gctggtattg ggaggtgcta ccttccgagg 5700 ggtgtaggtt ggtaaggagc cagcccgtcg ttgacccgat ccttgtttgg tggcagtcgc 5760 atgggccagt gagggtgccg aggcttccgg acaccgcgga ggtggtacat caccgtgtca 5820 gcgaggagga tgagcacgtc cgtcgctaca tggttgcgtt ggagggcagg ttcgagcata 5880 cctggtaggt tcttcgggga tctcactgga gctatgatcc tatgatggtt ccttctcttt 5940 gggtgtccac cgcccgcgcc gatacccgtc gggcgctacg gttctagatg tattagggat 6000 gctatatgta tgatagtatt cgaggagtat taatgataat attcgacgat gtacggacaa 6060 aagtgatgat gtattagctt ataattgaat gcatgctaat ttgaatacta ctttatttta 6120 cgatttggtt ttgcttattg aatgctcaaa ttggaaaatt actcctactt tgaatactat 6180 gcagaaatct aggagtctca aattggaaaa gtactcctac tttggttttt ggtacaaagg 6240 ttaagagaat ccgttttttg cagaactatg gatcaacata tctggaacct cgaagaggaa 6300 gaacttctgg aagatataat caaagacggc cccgacgttg aaccagctga atctccgtcg 6360 ttatatctaa accaggacgt tggaatggag gtcgagcgac acgaagatga agccgatggg 6420 gcaggagata ggtccaatca cggagaaggt gatagctcca ctgatggaga agccggtgaa 6480 gaggagaagt ccggcgaggt atacatatga agttcgacaa tcacttgtaa tatgtgaaaa 6540 atattggaga tagctctata ttgtatacat atacattcat ttgacgaatg tttctccctc 6600 ttaggcctcc acatcgagca aaactatgaa acgaggcccg actagaaagt tggatgcacg 6660 gatgcattac acatttgagg tgatatttcc tacgggcgaa cccaagcttc ctaagaatgc 6720 tgctgacaca ttcaagaagc aatgcggagt tctcgttagg gatcacgtcc cgattagcgt 6780 tcgggagtgg aacaagcgca aaggggcagc cgatagtgac tatgtcgccg aaaggtacaa 6840 agataatctt tggaatgatc tcatgtcaca tttcaacctg ccagaatgtg agaatgaaga 6900 cgccgcagac aaactgagga ctctgaagaa gatgccgaac tgttccgtag ctggaagaag 6960 aagctatgga aaaactatct gaagacacag aaagtgccag tattcgaggg gtatctagcc 7020 aagcaggcga atcactggaa ggcatttcaa gagtacaagg agtcagaaga tgcccaggca 7080 ttatcagaaa agaacaagat aaatgccgac aagaagatat atcaccacaa gctggggcca 7140 gggggctatg agactgccat cccaaagtgg gataagaaag agcaagatct gatagataaa 7200 ggcgtcgtac ctgaaccact ccgtgatgag tgggaattga gagcaagaaa ttggttcctt 7260 gcgcatgatg ggtcgtacga cgaaacaaca ggggacctca tctgcaatga caatcttagg 7320 atacccaggg agaattggaa aaggatagtg aaagaaatta aggagggaag aagaaagttc 7380 actgcagata gagagaaaga tttgctcaca ctggtcctcg gcaatgacga acatggagga 7440 cgaacgcgag gcttcggtcc ttcttacccg tggtggcttg ggtttgccag agaccaagac 7500 acttacagaa gccgagagag agcaaagaag cggcagcggg atgaggagaa tgacaagttc 7560 aaccagttgc ttgccaggat taacgagcaa tagaagcaga ttgatgagct tagaggagta 7620 ccgcgccagg aagatcctgc agttgatatt accggcgccc catctaagcg gaaaagcagt 7680 gtggctgaat ctgaggtccc gcccgacgat gaacgaagaa tgatagaggg cggtcccggc 7740 taccccgtgg atggaatcaa ggagtcaaca tcatgtgaac tccatcagaa attcaagtac 7800 atatccatga aggtggctgt cggacaagct ttaccttctg gccctgatgc acgctggcat 7860 ggccgtgaga ttccagctgg ctttgctaaa gtcggggtgg atgaaatgat gacggggttt 7920 aatgatatgg agctcgacat agctggaccc gaagatgaga ggacactcgg agaagtactg 7980 ggcgaagtca tcctatggga caagaactac atcaagcttc caggctcggc cccaaggaca 8040 acaccgcctc cgagtcgtcg caggtcacct acacctccat taccttcaag ccctccacat 8100 gacgtcggcc agcacaacac gagtccatct cgatcaccgc cgccggactt gggtcgtccg 8160 tctccgccgc cgcccgcaca tgatactaag cggaagctcc ccaaagcgca aactgtcgcc 8220 cctcccaaag gtacctcatg ctaatcttcc tatcagacct tatgatcgta cccccgagga 8280 aaacgccagg atagcaaagg aacaacatga ggcgcagatg aaaaggaagg aacccgagcc 8340 ccacccgaaa tacacccaga aggacatagc atgggcaaaa gacttcataa ccactccatc 8400 atagtatgac ttacactata agcctgatga ctatacacgc acattgcaga aggaagtgaa 8460 aaagagcagg tcacatgcaa gtgcaagtgg gagcaaatca agttcaacta caagcaagaa 8520 aaaatcacac gttcctcagc ttggacaaca ggccaaacag tcgatcccac ccctcaaggt 8580 gttaaccgag aatgttcccc ctacggtgca tgggcaagct tttgaaaaag caaaggagtt 8640 ggcggatgaa tgtggtatct tggttgaaaa tttgctggct tcccaagacg acaggatacc 8700 caaggctgtg gtagccccta agccacagtt tgtcatggga gagcctttgg tcagcaaaga 8760 tgatctccca acaaatatgc gttacttgca taaatggtac ttaagtgaat caaagaatgg 8820 gagaacgatg atcgtgctga gtgtcccaca ggagtactac ggccgctccg aagaaatcca 8880 taccgacttt gatgaactct tccagatgta caatggcgac gcccttgaca aatcgcttat 8940 gagttgctat tgtctgtaag ttttaattcg ttgtctacat ataacttgtt tagttatttc 9000 aattcattgt ctatatataa cttgtactct attatgcaga atgaagattc tggagtgtaa 9060 aagtaagagc atcataaata ttgggtttat tgatccagat aaaatacata tagcgacgct 9120 aactaattat cccaaggaga cagaggaaaa ccttctaagg tttctaagag atcaaaattt 9180 ctgtgaccac atactgtttc catacaactt caggtgaggg tctttactct gttgtgtcca 9240 ttcacttata agtgtaattg ataagttact cacacacaca cacacacaca cacacacaca 9300 cacacacaca cacacacaca cacacacaca cacacacaca cacacacaca cacacatata 9360 tatatataca catgtgcagc ttccattgga ttctgttgga cattcaaatt gataagggaa 9420 gagttgatgc cttcgaccca ttatcgagac ccttggaaca gttccaaagc ctgcaggaca 9480 tgctccaagg gtaattttaa tcattcttgc gctctatcgg tctctttcga tgattttctg 9540 atatatcaat taatgaaaaa cttagcaaat cattatcctt gtcgggcagg gtttggaatc 9600 ggttcaagtg cgtgactccc ggtaactttc ctgagaagct gacctttaga gcggctcagg 9660 taagtagtag tatgatacac ttctattaat tttcaatata tttatgatgc tagattatta 9720 ttttgattat atatattcca ttctcgtaaa gtgcgaccag cagccacggg gaacgcatct 9780 atgcggatac tatgtttgcg agaccattcg cacgtttacc tctgagttca aggagcacag 9840 attcgacgta agcaatgaac attcacacct ctatttttac ccgtcattct ttgttatcat 9900 gattgatatt catattcatc tcctcttctt atatagcaca cggccatgag gacgagaagg 9960 tcctaccaga gcaacgcgcg attgctgttg cagaggagct tgcgggattt ctgaggacgg 10020 aagctataga agacaaagga cgatttagtg tagctaaggg ccattactga tgttcgtcca 10080 tgtaatcgaa tagacgggct ctagtcccga taattcagat ctccatataa ttgtatatat 10140 atgatcgctt gtaagataag ttaatcttat atatatatgc ataattattt ctattttaaa 10200 ttatattaaa actaattcct gaacacaaaa cgcggaatca cgttaatctc ctgaacacct 10260 aaaccctaaa accctaaaac ccaaaaataa tttcattcaa aaaaaaaacc caaaagccag 10320 caaaatatga aaatctttag tcccggaccg tgtaacgaac cgggactaaa gggcctgccc 10380 ctggggcgct acgaggcgcc cacgtggagc acctttagtc ccggcgtgta agaggaaaag 10440 gttaggcctt tagtcccgcc cctttagtcc cggttggtga accggaacta aagcccctta 10500 cgggccgggg ctataggccc tgtccccact agtg 10534 // ID Copia3_HV repbase; DNA; GRAS; 11771 BP. XX AC . XX DT 06-FEB-2003 (Rel. 8.01, Created) DT 06-FEB-2003 (Rel. 8.01, Last updated, Version 1) XX DE Copia-like LTR retrotransposon. XX KW Copia; LTR Retrotransposon; Transposable Element; KW COPIA superfamily; Copia3_HV; Inga; TREP704; KW endogenous retrovirus; Non-LTR retrotransposon. XX OS Hordeum vulgare OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Hordeum. XX SQ Sequence 11771 BP; 3128 A; 2881 C; 2534 G; 3228 T; 0 other; tgaaagtgca gtcatgccct taatcgagtt ttggtgttaa tgacaacaca tacataggaa 60 actaatctta tttgttgagt gtatcttagg atggcaagta ctcttagtag attgagaatt 120 atgtgccgag gtggtctgag aagatcggga cttatatgtc aagaaggctc gggattgaga 180 aaagatgatg tagcctatcc tttaaattta ctattcttga gtatagggat cccgcattat 240 taagagggga tcacgggttt tgcgatgaac ttgctcatac tacatctcta cttttctgct 300 tataccacat ctccactgct ctgctcttat ctcaaaacag aaccaatgcc tcggacatcc 360 ggcttcctct ggacatccga cggtcggacg cccgaccgct tcggaaatcc ggaaccttat 420 accagagaaa tttgagtcaa ataactcgga cttccggcct cctcttgtcg ttcgagggcc 480 ggatgtccga cctccttcgg aaatccggaa ccttgcacca gagaaatttg agtcaaataa 540 ctcggacttc cggcctcctc ctgtagttcg agggccggac gtcccacctc cttcggaaat 600 ccgaaacctt gcaccagaga aatttgagtc aaataactcg gacttccggc ctcctcctgt 660 catccggtcc ctgtttgact acacagtggt tccagatata tatacatccc tcaaacgacc 720 gacccctgtc ggacgtccga ccccttgtgg gcatccggac atccgagaac cgccggatgt 780 ccgaccactg tcagacttaa gtgaccccaa cggttgtttt agtctcccca ctatatatac 840 cccccctccc acttcgtgag agggtgttca acacagcaag aacacttaca agaacacctt 900 tctcctcact cactcttgcc tacacccaat cttagatccc aagagcattt gtgagcccct 960 ttgagtgttg ttccaatcaa aagatagatc atctccttct cctcctctcc accaaagtga 1020 tttgtgattt gagcaagttt tgagcaatcc ccgtgatctt gttactcttg gaggttggag 1080 actcctaggc ggtaggagtc ttcggagagg aatcaaacca ttgtgattac ccccagaaag 1140 tttgtgaagg tttggaagcc acctcaaggc ttaccactag tggttgagaa acgccttcgt 1200 ggagttttat caaagggaga atagggtgag ccttcgtggc gttggtgtgc cttcgtggta 1260 acatccaccc ctctaacggt gacgtagctt cccccctcca aggaagtgaa caccgggata 1320 catcctcgtc tctcttggag tttcggttat ccctaaccct aactctctac ttgtgttaat 1380 ccttattacg tacttgcatt tgattattgt ttactggctg cgttacttta ctctaaatag 1440 cttactcttt gtctttgcaa ttattaggct cacgctcata ttccgcacca ttgcctaaaa 1500 ttgctaagta actattaaaa tttggaactg tacctattca ccccccctct aggtccatct 1560 cgatcctttt caatcggtat cagagcctcg tgctctattc ttgtggctta accgccctag 1620 agcgagatgg acgggactgc cattactata gctccagtgg agagtgacgg gacttccacg 1680 gaagtcaggt ccttcacctc tgaggacctg gaacgggccc ttgccaagca aaaagaggag 1740 catgatgatt ctcttgaggc cttggtccaa ataagactgg catcattaac cacggggaca 1800 accacgtccc cgagggcctc agggcaaaat ttgcacggtt cttcatttgg ccaacaacct 1860 ccacgcaata accaaaccag tgttccatgg ctttatgcta gatctcaagt tgagaaacct 1920 aagtacaatc ctggaggaga acctcctttg cttgatgaca attccgattt tgctttgtgg 1980 agagttggta tgcaggatca tcataggtac gccaatgatg agatgttgga catcctcgag 2040 catggctaca atcctgtaga tccaaggtgc ctcactccca gagaaactta tgacaagcat 2100 ctcaacgaca ctgcgatcat gtgcataaga aaaggaatga atgaaaacca acggagacct 2160 tacatacaca tcacaagcgc caaggaactg tgggatagca ttataaggac caagaccggt 2220 acctccactc ttcggctttc tcaatatgaa attgccaagg ggcaattgca gaacttctgt 2280 atggaaaagg gtgaatctcc caagcaacta ctagaacggc tcatgactct cgccgcatac 2340 attgagtcct gtgactgtga caagacgcaa gatggtttca acctgaccaa gagatttctc 2400 gtggacaagt tacttcatgc tcttgctccg taccaccatc aaatggtatg ggacataagg 2460 cagcaccatg ggttcaaaca aatgacccca gatgacatca tatccacttt ccaattattt 2520 gaagagtcac aaagcacctt gccatgcatg gcacttcaac atcaaagatc aatcttgctt 2580 tgaaagccaa gcatgaatgt gacgaagaag aaagtgaaga aaaagagggt gatgaagact 2640 gcgaagatgg tgatgatgtt gactctgatg aaagccatct tatgaggaca ttgctctctt 2700 tgtaaagaag ttcagtgcag gaaaattcaa gggaagattc ccaaagaaga aagtaagaaa 2760 atgctataac tgtgaggaaa ccaaccactt ctccaatgac tgcccttatg agaagagaga 2820 agataaacca aggtttccga agacctttct aaagaagaaa ttgccaaacc ctatgaactc 2880 caagctcaag agaagagatg gaagagcaat ggttgcacaa gaagaatcgg atccagaaga 2940 cgttcgtggg gttgccggag tatctcagga tacacaaaac accttgaggc tagtcaacaa 3000 aagtggcgat gttgtccact acaactatat gaaagactac aagggcaacg cccacaagtg 3060 tttgatggca aagactgcca tagaagatga ggaagaccaa agctcccatg ataaggttaa 3120 ggtaactcca cggttaaact ctttcagtct agcctctacc tcatctgatg agtaccttga 3180 tgcggaagat cactatgagg ataatgactt agatcatcct atgtttgcca aaataaacaa 3240 atttatgtgc tctcctaaag gaaagaagct cactatgttt cgcatactta tggaaatggt 3300 gagtaagcac accaatacca tcaaggaact cgaaaccctc gtcactgagg agaaggaaag 3360 aaatgaaatc cttgagtaga aaatcctgta tgaggaagca caaaatgatg cattatgctc 3420 aaaagttggt gaaaaccttg ataaacatgc taacgatctt gcctccttga aaaaggctga 3480 atctgtgtgc aaagagttat taaatgataa aaaccgactt gtgaattctc atgcttctct 3540 ttctaaggac tgtgagcgcc tatccttgtc tctcaaggac aaggaagaga aactcactgt 3600 tcttacaaag agctttgagg cactcaaggg tacttatctt gacactctag ctaaggctta 3660 ctcctcgcct attattaatg ttgatacctg cactgctaac tctagtagtg aactggcatc 3720 tatccttgag gaaaactgtt cgctaaaggc atagctagat agaggtctca tgacatgtgc 3780 acaaggacaa aagactctca atgagatctt aagtcaacac aatgaagtct ttaccaagga 3840 agggcttggg ttcaatccaa gcaccaccaa gaaaagtgta tctcctctca agtgcaccac 3900 cccgcttaaa gagatatttg tacgagaggg acacaaggag aaaggtaagg ttgtgagtgg 3960 gtcggccact aggggtttgc ccactctcaa caagacaact gaattcatgc ctccatccta 4020 tgtacttcgc aaatcaaagg aaggagaggt ttatgctaaa ttcgttggtc cccgtaatgc 4080 attccggttt tatgctattt gggtccctaa gactcttgta actaatgtga gaggccccat 4140 gaagaaatgg gcacctcaaa ccaagtctta attcgtgtac aggttgtttt ctccggagga 4200 gtcaaatggg tgatcgacag tggatgcacc aatcatatga ctggagatag taacttgctc 4260 tatgacttca tgcaagccat tcgaccatac atgagcattg tattcggtgg agggtcgaaa 4320 gggcaggtaa ttgggttagg caaggtggaa atcactaatg acatgtctct tgcaaatgtc 4380 atgcttgtcc aatctcttca atatcatttg ctttcagttt gccaattggc ttccgttggt 4440 tatgacacac tattcagact aacggatgtg aaagtcttta agagagacac tctcgaagtg 4500 gcctttgttg gagagttgga tggcaacctt tacacggttg atttctcgaa agagagcact 4560 ttccatacaa cttgtctgat ggccaaggct gacatgggat ggctgtggca tcgccggctc 4620 gcccatgtcg gcatgagaaa tcttcataat ctcttaaacg tcaatcacat ccttggacta 4680 actaatgtat cttttaagaa agatagtgtg tgcagtgcat gcatagatgg gaagcaacat 4740 caatcaaaac acccacccaa gaatattgta tccacttcaa ggccgttaga gctccttcat 4800 gtggatctgt ttgggcctcc ttcatgggca agtcttggtg ggaaaagtat ggactagtca 4860 ttgttgatga ttactcaaga tacacatggg tattctttct caagtccaag gacgagacga 4920 agatcacctt cattgatttt gccaaacaag tctagcggaa gtttgacaag gacatcaagg 4980 caataagaag tgataatggc tctgagttca agaattacac cctagaagaa tttcttactg 5040 atgagggaat tgaacatcag tactccgtac cttacacccc tcagcagaac ggtgtagcag 5100 agaggaagaa ccggacactt gtggaaatgg caaggtccat gttagacgaa tacaagtcac 5160 cacatagttt ttgggctgag gctgtcaaca cagcatgtca tgcatcaaac cggcttttcc 5220 ttcgaccaat attggaaaag actccatatg aggtcctaac cgggaacaag cccaatgtca 5280 agtactttcg tgtatttgga tgcaagtgtt tcatcctcaa caaacgggaa cggttaggaa 5340 gatttcaatc caaaacatct gaagggattt ttgttggcta tggatcaaac tctcacgcct 5400 acagagtcta caacaaatcc actggatgtg ttatagaaac ctgtgacgtg acgtttgatg 5460 aatttaaccg ctcccatggg gagcaagttg atctaactga tgcaggtgaa taagattcct 5520 cgcaagatat cttgaacatg ggtgtaggta cacttcttcc catggaacaa aaaccccacg 5580 atgatgatga gagtatttct catccccaag acagttcact gtccgtacct ccacaagata 5640 ctagcacaca tatcatgcca gttgttgagg atcaagtggg agaacatgtc tctcaccctg 5700 atcacactca agaacaagtt gaccttcaag agctagacca aagtatggat atggttgatg 5760 atgaacctca acaggtgcaa cgcgaagagg aatatcttcc atggcacgtt aatgatccat 5820 atgttgagga cgttgatgat ggaaacgaag tcgaacctca tgaaaccctg acctccatca 5880 tgctacgtgt ggccggtcgt gttgatattg atcaaatcct caccggcgtg ttagaaggta 5940 gagtgactcg taaacaatta acaaactttt gtgctcactt ttcgtttgtc tctagtactg 6000 tgccacacag ggttcaggat gcattgtgtg acaatgactg gctccttgct atgcaagaag 6060 agttaaacag ttttacacgc aacgaagtat ggtcattggt agaacgacca attgaggaac 6120 acaatgtcat tggaactaaa tggatcttca agaacaagga agatgagaat gggattgtcc 6180 tccgcaacaa ggcaaggtta gtagcacagg ggtactccca agttgaatgt ttggactttg 6240 gtgagacttt cgcccctgtt gctcgtcttg aatccattcg cattctattg gcctatgctg 6300 ctttcaatgg ttttactttg catcaaatgg atgtgaaaag tgctttcctt aacggtcctc 6360 tacaagaata ggtatatgta tcacaaccac ctgggtttgt tgacccccat cacaaagacc 6420 atgtgtacaa acttcacaag gttctgtatg gcctcaaaca agcaccccgt gcttggtatg 6480 atcatcttaa gaagttctta ctcgatgatg gctttgtgag aggggtgatc gatcccactc 6540 tttttactaa gagggaaaat ggtgatttga tcttatgcca aatctatgta gatgacataa 6600 tttttggttc tcctaacatc catttatgca agaagtttgc ggcctccatg accaagacct 6660 ttgagatgtc actcaacaca gacttgaagt tctttcttgg gtttcaaata caacaatttc 6720 aagaaggaat tttcttgtct caaactaaat acctcaaggg cattctagaa aatttcgata 6780 tgacaaatgc taaaccaatg aagacaccca tggccacaga tgttgttcta aatgaagaca 6840 ccaatggtat tccttttgac ccatctactt accgctctat gattggttcg ttactttatc 6900 tttgtgcatc tagaccgaac atcatgttaa gtgtaggcat atgtgctaga tttcaagctt 6960 cccctaggga aagccatcat acggcagtta agcatattct tagatacctt gttcacaccc 7020 caaagttagg cctatggtac cctaaggatg caaagttcga tcttattggg tactccgatg 7080 cggattgggc tggtgacaaa gtgggacgga aatccacttt cggtgcatgt cagtttcttg 7140 gacgttcctt gtaagttggt cctcgaaaaa gcagaattat gtttctctct ccacggccga 7200 ggccgaatat attgcagccg caagctgtgc aacccaactg ctatggatga ggcaaaccct 7260 aaaggattat ggcatcacgt atcgacatgt gcctcttctc tgtgataatg aaagtgccat 7320 aaagatctcc gagaacccca tcgatcaccc tcgcacaaaa catattgata ttagatatca 7380 tttcttgaga gaccatgtgc aaaagggtga cattgatatt gctcatgtgg gtaccgacat 7440 gcagctcact gacattttca ccaagccact ttgcgtacca agattctgtc agcttaggcg 7500 tgaacttggt accttggagc ttgataacat aacttgaaat cctgtacaca tgcacacact 7560 cacattatgt tcttgtcttg atgtcagcat gcatctaggg ggggtcacta gcactcacgt 7620 cataattttt gttttaaccc tacaatatgc ataaatcaac tactttccac aagtagtata 7680 tctaattctt gtaggcaact gtgttgggta tcccttgtga taaaccatgt caaatcacct 7740 catcatccaa atcccagaaa ttgcctctgc ctacttctct ctcggtcgtc cgacgagtct 7800 cggacgtccg acgactaaac acactccgga cgtccggcac atgtcggtcg tccgacggct 7860 gatgctctcc ggacgtccga cgctcgtcgg acgtccgaca catcgggagc ctctataaat 7920 agaggggcac gggctgggcc ttgccctagc ccccacgcgc ccccctttct cccagccgcc 7980 accacagccg ccgccagtgc ctgaggagct cgaccgcgcc gccaccgggg gccctgcccc 8040 gcgatctggc tgatctcctc cgcgggatcc gtcttccctt cctctcctct ctcgatctgc 8100 aggtatcctc tcggtctctc tcgcgattgg ttcccctttc tcactagttc atgtgttcgt 8160 tcatgtggtt tgaccgtgac cgttccccat tgggtttcca atcgtgtagg ccttgttcca 8220 tcatgcccaa gattaagcac actgcccgga agaactctgc tggctcatcc gctcgtgccc 8280 ctactcgcac ggggtcggat gactccgatg caccacgttg tcccttcaaa cgggtcgccc 8340 ggcgtcctcc tccacagctc cactcctcgt ctcgtctgat ggctctgact tcgaggatga 8400 gcttgcagtt gaggaacgtg ttgaacatgt tgccgttcag aagactatgc cgaagcttgg 8460 gactcgcagg ccctcatata tgccaccagc tcctcctgaa tagcccgaag gtgatgctcg 8520 tcgcatctcc cttgaacctt ctcctacttt aggtcgtgaa gtcaaggact tcaccaaggt 8580 tcctaagtct tcctacttta tattctgccg cgatgttaat caattttctg ttgaacgtga 8640 ctctatggac tcatgtttcc gcacacacgt ccaagcggac atcttttcta ctgtcatcgt 8700 tcctaagggt ctctcagtac atcattatat tgatcttgag catattccca ctcacccgac 8760 gaaatacccg ggtaccattg agctcattca gtcattgggg cttgctgccc cctttgcttt 8820 tcggtgcaat tttaacagtg ccgctattca tcaattttat gccacgtgtt tgtttggctc 8880 aaacaacact gttagctgga tgacttctga tgttgagttc acagcctctt atgatgagtt 8940 tgttgccgca ctcggtttcc ccaactccgg cttcaaaatc cataagaatg atcctaacca 9000 tgcacataag cccattgagg cgtgtggcct tctcctcaaa ccactttgtg aacttgatgc 9060 agacgaatgg atgaaggatc ttaaccaagt atccatctgg cgctctccct tctttatcat 9120 ttttcagtgt ctaatccgca ccatctatcc caagatgggt gataggggag cctgcaacga 9180 ctactgtatt gacatcatgt cacatttaca cgagtcccct aagtgcaaga ttaatgtgcc 9240 tcactttctc tggcatgaga ttcggctcgc tagtcttcaa tacaagcgag ccttccctca 9300 tgcccccttc atctaggcct ttatttacca tgttgctgaa ttcattgttg ctcccactca 9360 cacgcatcac aagtgggtca ttcccaatca catggcgaat gactatgctc ctaagaaaac 9420 cccatccacc tccactcgcc gcactgctac ccggtcagca accccttcat ccagctcagc 9480 tcctcttggt cgctttgcca aattcattgg caaggcacat tctgccatga tgaaggcttt 9540 ctctttctag tgcggtcaaa ctcatgatgt ggtttctcgc ctcgtctcct ccaagaatgc 9600 cctcaaggct cgtctgagag actcgggctc tcttgatgtg attgacgatg aggatcttcc 9660 tgctgctcct ccttctgact ttggcttccc atctagtcct gagtgggctg attttcttga 9720 cgaggctggt ggcagtggct cgcctgacga tgaggatgat gaggatgatg ctgctgatga 9780 tctctgagca tggttgatgc ttttggtgcc tccctttttg gtacttcaag ccaaagggag 9840 agtaatgtat cctagtttta gtctttggag atttagtctc aatttgcatg tttgtgtaat 9900 gtaatggata aacgaccgtg atgcactatg tatggctacc tatgaatgtc gtgattgcta 9960 tgaattgcta tgatatcatc gtatgctatt atgttttgct ctattacttc atatgatgat 10020 ctattatctt tactaagtca catgataatt ttgatacgca cattaagggg gagctccgat 10080 attttaccat gcacatacta agggggagct ccgtactaaa cctctccaaa gctaaaatgt 10140 atgttaaatc ttttgagagc tatgtatatg ttgtcatcaa ctaccaaaaa gggggagatt 10200 gaaagtgcag tcatgccctt aatcgagttt tggtgttaat gacaacacat acataggaaa 10260 ctaatcttat tggttgagtg tatctcagga tggcaagtac tcttagtaga ttgagaatta 10320 tgtgccaagg tggtctgaga agatcgggac ttatatgtca agaaggctcg agattgagaa 10380 aagatgatgt agcctatcct ttaaatttac tattcttgag tatagggatc ctgcactatt 10440 aagaggggat caaaggtttt gcgatgaact tgctcatact acatctctac ttttctgctc 10500 ataccacatc tccactgctc tgctcttatc tcaaaacaga accaatgcct cagacatccg 10560 gcttcctccg gacgtccgag ggccggacgc ccgaccgctt cggaaatccg gaaccttata 10620 ccagagaaat ttgagtcaaa taactcggac ttccggcctc ctcctatcat ccgagggccg 10680 gacgtccgac ctccttcgga aatctggaac cttgcaccag agaaatttga gtcaaataac 10740 tcggacttcc ggcctcctcc tgtcatccga gggccggacg tccgacctcc ttcggaaatc 10800 cggaaccttg caccagagaa atttgagtaa aataactcgg acttccggcc tcctcctgtc 10860 atccggtccc tgttcgacta cacggtggtt ccagatatat atacatccca cggacgaccg 10920 acccctgtcg gacgtccgac cccttgtggg cgtccggaca tcggagaact gccggatgtc 10980 cgaccactat cagacttaag tgaccccaac ggttgtttta gtctccccac tatatatacc 11040 tccctcccac ttcgtgagag ggtattcaac acagcaagaa cacttacaag aacacttttc 11100 tcctcactca ctcttgccta cacccaatct tagatcccaa gagcatttgt gagccccttt 11160 gagtgttgtt ccagtcaaaa gatagatcgt ctccttctcc tcctctccac caaagtgatt 11220 tgtgatttga gcaagttttg agcaatcccc gtgatcttgt tactcttgga ggttggagac 11280 tcctaggcgg taggagtctt cggagaggaa tcaaaccatt gtgattaccc ccggaaagtt 11340 tgtgaatgtt tggaagccac ctcaaggctt accattagtg gttgagaaac gccttcgtgg 11400 agttgtctca aagggagaat agggtgagcc ttcgtggcgt tggtgtgcct tcgtggtaac 11460 atccgcccct ctaacggtga cgtagcttcc ctccaaggaa gtgaacaccg ggatacatcc 11520 tcgtctctct tggagtttcg gttatcccta accctaactc tctacttgtg ttaatcctta 11580 ttacgtactt gcatttgatt attgttcacc aactgcctta ctttactcta aatagcttac 11640 tctttgtatt tgcaattatt aggctcacac tcatattctg caccattgcc taaaattgct 11700 aagtaactat taaaatttgg aactgtacct attcaccccc cccccctcta ggtccatctc 11760 gatccttttc a 11771 // ID TEKAYLTR repbase; DNA; GRAS; 3441 BP. XX AC AF050455; XX DT 15-JAN-1999 (Rel. 4, Created) DT 15-JAN-1999 (Rel. 4, Last updated, Version 1) XX DE LTR from gypsy/Ty3-type retrotransposon TEKAY. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW GYPSY superfamily; LTR retrotransposon TEKAY; TEKAYI; TEKAYLTR. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-3441 RA SanMiguel J.P. and Bennetzen L.J.; RT "Evidence that a recent increase in maize genome size was caused RT by the massive amplification of intergene retrotransposons."; RL Unpublished. XX RN [2] RP 1-3441 RA SanMiguel J.P.; RT "TEKAYLTR."; RL Direct Submission to Genbank (13-AUG-1998)Biological Sciences, RL Purdue University, Hansen LSRB Rm 339, West Lafayette, IN 47907, RL USA. XX DR GenBank; AF050455; Positions 1 3441. XX CC TEKAYLTR is a LTR from TEKAY retrotransposon. XX SQ Sequence 3441 BP; 947 A; 741 C; 625 G; 1128 T; 0 other; tgtaacacca taaaaatcat caactaaaaa tattgcattt agttatttat gataaatagg 60 gtattaaatt ttcatttaaa gtgattgtta tttatttgca ttttgaatca tttttgattt 120 gcgcatgatt gattatcgga tgtttaatat catttcttct tatatgaaaa attctagtaa 180 ataacataat aattaaataa tataataatc attagtctaa aaataaatat tttatttata 240 agtaattttg gattaattag tatgaatttt tgagttattt aaaattgtat ttcgattttt 300 tttaaaaaaa acctccctaa ccctaaggcc cactaggggt ccatctacct aaccctagcc 360 gtgccctctc cctagctgct ccccaagccg tcgccgcccc ctgctaacct ctccctctcc 420 tattctctct tatctcacct ctctctcccc tcgcttctcc cccgcacgcg ccgcacgccc 480 cgcgcaccag gaagctgcca ggagctccac cgccctccag cccacgccct gaccgagccc 540 gaccggccac gacactcccg cgaccccgac cggcctacgc tccagccgta cgtccccgac 600 cccgacgtgc ctgacgaaga ccctgcgcga acccgcgcac tcgccgcgcg acactgactg 660 cctgtttcac gcgccaggag cctaggcgcc gcaccgaccg cgccaaccgc agctcgcgtc 720 cgtttcttct acgcacgatt aatggagctt catgcgacat tttcttcttc attcttccat 780 tatcctcctt gtaaccgaag catctatggc gcttgaagaa cccgccgacc attgaagccc 840 ctcggccgac cttccctctc cctccgtctc ccctataaat ccgacgctct ctcctctctc 900 cctcccctac ccgagctctc tctcattcct cgcactctct ccctcgtcgt tcatccccgg 960 agctcgtcgt ttgtcgacag agttcgccgt tcgtcgctgg agttcgccgt tcatcgccgg 1020 agctacgcca ctcgccattc gaagccaagc ccctgctctt ctccacccgg ccgaaacccc 1080 gtcgatccct ccccgtcaca cgtacgaacc caaggttgaa gacgacccaa attaatttgt 1140 gtattttcga aattcttttg attcgattca ggaattgtat atttatgttg ttgtaatatg 1200 aacatgtgtg atccgaaatt cacacgtatg tgcgctatag aatttttggt agatttatgc 1260 gattattagt gcaccgtgat tattcatgtt agtcgatgcg atgatttttg gattagagag 1320 aagtatgacg aaaatttaat agtctcacgt tggtgataaa aacactagat aggaaatttt 1380 atagctaact ttggtcacaa ttaactatgg aaaccatttg gagaattata atcataggtt 1440 cattttaatg gatttagtaa acggtataga attcatgtca tataaacatt ataggatttt 1500 agatgatcta tctccgatta tttttattaa tattttcttt tagaaagaaa gaataaaata 1560 ccactagtag tatggaaaat agatttttac taaccaaaat aaacgtgttc gcgagtatag 1620 cacttaaatt attagagtta gtaaaatact tgtttatgtc aaaataacct cgtttatttt 1680 ataaaaagtc caattagtga tttatattga tttttagaat attaatgtta atagattatt 1740 ttttagctat actcaataat taaagttaga aataaaaaga ataaaatata ttagtttatt 1800 tattagtaat aactagcatt tattttcata aaggattttg atacgtatta atattagtta 1860 aaactatatt tatagcacct actcataaat tcaccattta tgactcgcaa taatagccat 1920 aattgaatta gtaagtattt acgcgtttag gacgtattta tggtgtgata agtgtgatgt 1980 gttaatatat atgtaatggt gaatgattat cctgtaccgg tgtatgttta tttattggtg 2040 tatgtttcca ctttgtatgg caatgtacaa cgttattaga agctgattgt gtggtagagg 2100 attcgaattt ggttgaggat gaatcgtagg acacacttga gcaaggcaag tggattctcc 2160 ctctgcatat tctatttgta cccaattaat gcatataata atgtttactt ttttatatat 2220 tgcataattt gatgagattt acctaattaa ggatttccta gatttaccaa ttgtattcct 2280 tgattaccct ggaaattatt aagctttgca aatttgtgcg accgctcaac ttaataattt 2340 tgatgtcact cattatttga tactaatgtt ccaaaaatga aattggcttt atgatattaa 2400 cccgatggtt aaacaagatt attttatatt aactggaaca tggagtgacc acctaggata 2460 acagtgcaac cacgagtgct atcatggctc tggctttggt aattagcttt atatgcttag 2520 tgcctagcaa ccttacttga aatatgggca agaggcggag cggtagtggt ggcagctcac 2580 gttgacatgg gggcgtattc ttggctaagg tacctcacct agagggcctc cacaccgact 2640 ttagaaacct tagcgggttg ctttgtatta agtgtatttt gtgaaagcct cataatgtat 2700 ccctagccat tcaccttggt agtgtttatg ggtccgatca atccaggcta gatgggatac 2760 atggcttgtg ggtaaagctg taccacctct gcagagtgta aaactgatat atcagtcgtg 2820 ctcccggtta agagcagcct ggactcctca cattataatt gaacttaaag atggacaata 2880 aatcgagatc cgatgatctg ccaatggttt gcttaagtgg tttcacttaa gtgtttttga 2940 tatactcata ttcctttgtt taaatgggat acttgggatt cacacttatt agtaagacat 3000 gtgttgttaa taaaatgttg accaactaaa atgcttactg ctcaacctta gcctcacctt 3060 gttatacctg cattaattcc ccccccccac ttgctgagcc ccgaccataa gtgagctcac 3120 ccttgctaat attttgatca gagggtgatg ctggagactt tgatggagat tttgacgacg 3180 atgaattcta agtctaacga tgtgccagtc atcttcctgt gggagattac ccatgttatt 3240 taaatcccgc cttgctttga tgttgatact tgttaaagat ataatgattc agatgatgta 3300 ataaagtact ctactctctt tacgccttta ttgcattgta ttttgatata ttacacttgt 3360 gacatcaaca tatgtgtgga aatggatctt ggcacacata tggtatgcgc tcggttctac 3420 cccctggaac cgggtgtgac a 3441 // ID OPIE2 repbase; DNA; GRAS; 6422 BP. XX AC U68408; XX DT 06-MAY-1999 (Rel. 4.04, Created) DT 25-JUL-2007 (Rel. 4.04, Last updated, Version 2) XX DE Zea mays retrotransposon Opie-2. XX KW Copia; LTR Retrotransposon; Transposable Element; POL gene; KW gag gene; OPIE2. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-6422 RA SanMiguel J.P., Tiknonov A., Jin K.Y., Motchoulskaia N., RA Zakharov D., Melake-Berhan A., Springer S.P. et al.; RT "Nested retrotransposons in the intergenic regions of the maize RT genome."; RL Science 274(5288), 765-768 (1996). XX RN [2] RP 1-6422 RA SanMiguel J.P., Tiknonov A., Jin K.Y., Motchoulskaia N., RA Zakharov D., Melake-Berhan A., Springer S.P. et al.; RT "OPIE2."; RL Direct Submission to Genbank (29-AUG-1996)Biological Sciences, RL Purdue University, 339 Hansen LSRB, West Lafayette, IN 47907, RL USA. XX DR GenBank; U68408; Positions 1274 7695. XX CC Distantly similar to BARE1_HV,TY1_PE,TTO1_NT and ATCOPIA5I. XX SQ Sequence 6422 BP; 1899 A; 1258 C; 1589 G; 1676 T; 0 other; tggtatcgga gccgttctct tcaagaaagg gactaaccgc ccgaagagat ggatcctaag 60 gggaagggaa ttgtgatcaa cgacaaggag aaggagtcct tcgtcaatga gccaagggat 120 gacaagtcca acaactcggg ctcgggccac aagcgaaaag atgggaagaa gaagaagaca 180 agacgcatca aggagatcgt ctactacgac agcgatgagt cctcttcttc ccaaaaggac 240 gacgacaacg actacaggaa gacggtcaat tcgaacttct catttgatta ttcgcgtatt 300 ccacatagtt cgaattcgca tttgctttcc attcctcttg gcaaacctcc acactttgat 360 ggggaggact acggattttg gagtcacaaa atgcgtagtc acttattctc tctccatcca 420 agcatatggg agatagtaga gaatggaatg aaatttgata gctcggatag ccctatgctt 480 ataaatgaac aaattcatag aaatgcacaa gctactactg ttctcttagc atctttgtgc 540 agggaagagt acaataaggt gagcggcttg gacaatgcca agcagatatg ggacaccctc 600 agaatctctc acgaggggaa cgacatcacc atgctcacca agatggagtt ggtggagggc 660 gagcttggac gattcgccat gataagggga gaagagccaa ctcaaactta caaccggctc 720 aagaccctta tcaacaaaat aaggagctac ggaagcacgc gttggacgga tcacgacgtc 780 gtccgcctaa tgctcaggtc ctttaccgtt cttgatcctc atctcgtgaa caatattcgt 840 gagaatccca ggtacacgat gatgacgccc gaggaagtac ttggaaaatt cgtgagcggg 900 cggatgatga tcaaggaggc aagatacgtc gacgacgcgt tgaacggtcc actccacgag 960 cctcaaccca ttgctctaaa ggcaacaagg aacaaggagt cgctacctag caaggtggcg 1020 caagttgagg cggccgggct caatgatgaa gagatggctc tcatcatcaa gagattcaag 1080 acggtgctga agggtcacaa ggggcagcca agcaagaaca agacaaaggg gaaacgctca 1140 tgcttcaagt gcggtaagat tggtcatttt atcgctaact gccccgataa cgatagtgac 1200 caggaacagg gaaacaagag ggaaaagaag aagaattaca agaaggccaa ggcgaggcgc 1260 attctaggca aggagtggga ttcggattgc tcctcctccg actccgacaa tgagggactc 1320 gccgccactg ccttcaacaa atcggccctc ttccccaacg agcatcacac ttgcctcatg 1380 gcaagggaaa agaaggtagt aatcactcgt aatactaata cttatgattc ttctagtgat 1440 gatgaatcta gtgaggatga aattgattac tctagtttat tcaagggatt ggacagaact 1500 aagatagcta agattaatga gttgattgat gccttaaatg aaaaggatag aatcttagag 1560 aaacaggaag accttttata tgaagaacat gataaatttg ttagtacaca aaattcactt 1620 gctctagaag ttaaagaatg gatactttct tgtgaacttt ctacttgtaa tgaaaccatt 1680 tcttatttaa aaggtgaaat taatgtttta actgctaaac tagaagtagc aagtaactct 1740 tgtgttgaaa atattacaat ttgcactagg tgtaaggatt ttgatgttaa tgcttgtagt 1800 gaacacttag tttcaatttc aaaactaaat gatgaagtgg ctagtcttaa tgcttaactt 1860 aagactagca aaagtgattt tgaaaaacta aaatttgcta gggatgccta cacggttggt 1920 agacacccct caattaagga tgggcttggc ttcaagaggg aagccaagaa cttaacaagc 1980 cataaggctc ccattcccgc caaggagaaa gggaaggccc ctatggctag tagtgcaaaa 2040 aggaaccatg cctttatgta tcatgatagg agacatgcta gaaatgcttg taatgatttt 2100 gattcatatg tttatgattc tcatgccatg tttgctccta gttcttcata tgtgtatgat 2160 agaaatgtta ctaggagaaa tgttgttcct aaaaagaatg ttattcatgc tcctaggaaa 2220 gtagcaaatg aaccttctac catttattat acttgcaatg ctccctttgc tatttgtaga 2280 aaggacaaga aggtaattgc taggaagtta ggggcaagat gcaagggaga taaaacttgc 2340 atttgggtcc ctaagaatat atgtgctaac cttgtaggac ccaacatgag ttgggtacct 2400 aagacccaag cctaaatttg ccttgcaggt ttatgcatcc gggggttcaa gctggattat 2460 cgacagcgga tgcacaaacc atatgacggg ggagaagaag atgttcacct cctacgtcaa 2520 gaataaagat tcccaagatt caattatatt cggtgatggg aatcaaggca aggtaaaagg 2580 tttaggtaaa attgcaattt caaatgagca ctctatttct aatgtgtttt tagtagagtc 2640 tcttggatat aacttgctat ctgttagtca attatgcaat atggggtata actgtctatt 2700 cacaaatata gatgtgtctg tctttagaag gtgtgatggt tcactagcat ttaagggtgt 2760 attagacggc aaactttact tagttgattt tgcaaaagag gaggccggtc tagatgcatg 2820 cttaattgct aagactagca tgggctggct gtggcatcgc cgcttagcac atgtggggat 2880 gaagaacctt cacaagcttc taaagggaga acatgtaata ggtctaacta atgttcaatt 2940 cgaaaaagat agaccttgtg cagcttgtca agcagggaaa caagtgggag gctctcatca 3000 caccaaaaat gtgatgacga catcaagacc cttggagatg ctgcatatgg acctcttcgg 3060 acccgtcgcc tatctgagca taggaggaag taagtatggt ctagttattg tagatgattt 3120 ttcccgcttc acttgggtgt tctttttgca ggaaaaatcc gaaacccaag ggaccctcaa 3180 acgcttcctc aggagagctc aaaatgagtt tgagctcaaa gtgaagaaga taaggagcga 3240 caacgggtcc gagttcaaga accttcaagt ggaggagttc cttgaagagg aagggatcaa 3300 gcacgagttc tccgctccct acacaccaca gcaaaatggt gtggtagaga ggaagaacag 3360 gacgctcatc gacatggcga ggacgatgct aggagagttc aagacccctg agtgcttttg 3420 gacggaagcc gtgaacacgg cttgccacgc catcaacagg gtctaccttc atcgcatcct 3480 caagaatacg tcgtatgagc tactaaccgg taacaaaccc aatgtatcgt actttcgtgt 3540 atttgggagt aagtgctaca ttctagtaaa gaagggtaga aattctaagt ttgctcccaa 3600 agctgtagaa gggtttttat taggttatga ctcaaataca aaggcgtata gagtcttcaa 3660 caaatcatcg ggtttggttg aagtctctgg cgacgttgta tttgatgaga ctaatggctc 3720 tccaagagag caagtggttg attgtgatga tgtagatgaa gaagacattc caacggccgc 3780 aatacgcacc atggcaattg gagaagtgcg gccacaggaa caagatgaac gagaacaacc 3840 ttctccctca actatggtgc atcccccaac tcaagacgat gaacaggttc atcaacagga 3900 ggtgtgtgat caagggggag cacaagatga tcatgtgttg gaggaagaag cgcaaccggc 3960 acctccaacc caagttcgtg cgatgattca aagagatcat cccgtcgacc aaattttggg 4020 tgacatcagc aagggagtaa ctactcgatc tcgattagtt aatttttgtg agcataactc 4080 ctttgtctct tctattgagc ctttcagggt agaagaggcc ttgctagatc cggactgggt 4140 gttggccatg caagaggagc tcaacaactt caagaggaat gaagtttgga cactggtgcc 4200 tcgtcccaag cagaatgttg tgggaaccaa gtgggtgttc cgcaacaaac aggacgagcg 4260 cggggtggta acgagaaaca aggctcgact tgtggcaaaa ggttatgccc aagtcgcagg 4320 tttggatttc gaggagactt ttgctcctgt ggctaggcta gaatcaattc gtatcttgct 4380 agcatatgcc gctcaccatt ctttcaggtt gtaccaaatg gatgtgaaga gcgctttcct 4440 caacgggcct ataaaggagg aggtgtacgt agagcaaccc cctggcttcg aggatgaacg 4500 gtaccccgac cacgtgtgta agctctctaa ggcgctctat ggacttaagc aagccccaag 4560 agcatggtat gaatgcctta gagatttctt aattgctaat gcgttcaagg ttgggaaagc 4620 cgatccaact cttttcacta agacatgtga tggtgatttg tttgtgtgcc aaatttatgt 4680 cgatgacata atatttggtt ctactaatca aaagtcttgt gaagagttta gcagggtgat 4740 gacgcagaaa ttcgagatgt cgatgatggg cgagttgaac tacttccttg ggttccaagt 4800 gaagcaactc aaggacggca ctttcatctc ccaaacgaag tatacgcaag atctgctaaa 4860 gcggtttggg atgaaggacg ccaagcccgc aaagactccg atgggaaccg acggacacac 4920 cgacctcaac aaaggaggta agtccgttga tcaaaaagca taccggtcaa tgatagggtc 4980 tttactttat ttatgtgcta gtagaccgga tattatgctt agcgtatgca tgtgtgctag 5040 atttcaatcc gatcctaagg agtgtcactt agtggcggtg aagcggattc ttagatattt 5100 ggttgctacg ccttgcttcg ggctctggta tccaaagggg tctacctttg acttggttgg 5160 atactcagac tccgactatg ctggatgtaa ggtcgatagg aagagtacat cggggacgtg 5220 ccaattctta ggaaggtccc tggtgtcgtg gaactctaag aaacaaactt ctgttgccct 5280 atccaccgct gaggccgagt atgttgccgc aggacagtgt tgcgcgcaac tactttggat 5340 gaggcaaacc ctcagggact ttggctacaa tctgagcaaa gtcccactcc tatgtgataa 5400 tgagagtgct atccgtatgg cggaaaatcc tgttgagcac agccgcacaa agcacataga 5460 catccggcat cactttttga gagaccacca gcaaaaggga gatatcgaag tgtttcatgt 5520 tagcaccgag aaccagctag ccgatatctt taccaagcct ctagatgaga agaccttttg 5580 caggctgcgt agtgagctaa atgtcttaga ttcgcggaac ttggattgaa ttatagcata 5640 catgtgttta tgacttttga tcatgttcat tctgcatttt gttgcttatt gtggtgctca 5700 agttgtacac acactccctg gacctcacaa gtccgttgca aagtgatgca catgtttagg 5760 gggagttgtg ttacaacttg accctttgag actaaccata tgcttgagtt tgcttgattt 5820 agtctcgaag gagaattgaa agggaaaagg gtggacttgg atcatgaaag acttccactg 5880 cactccgatg agagggtaac ttattccaag ttcatctcat gaactcctat tgccatttgc 5940 tcttaattga agattttggt gaggcaatgg ggttataggg ccaaagttga tcccgttttg 6000 gtgcttgatg ccaaaggggg agaaaataaa ggccaaagga ataaatggat cagctaccac 6060 ttgcgcttga gggatttgaa aatagtagag tagagctttt ggtttgtcaa aactctttca 6120 ttatctcttt tgtcaaaagt tagcttcttg tggggagaag tgttgattat ggaaaaaggg 6180 ggagtttttg aaatctttga ttaatctctt ttgaaatgac tctctttatg cttcaacatg 6240 tgtgtttgac tttgagatag agatttgagt ttgatttaca aaaacaaacc aagtggtggc 6300 aaaggatgat ccatatatgc caaaatcgaa tcaaaatgaa tttagttttt atttgaagtg 6360 attttgcact tgttctagtt gctttatgtt gtgttggcat aaatcaccaa aaagggggag 6420 at 6422 // ID Copia1_HV_LTR repbase; DNA; GRAS; 323 BP. XX AC . XX DT 06-FEB-2003 (Rel. 8.01, Created) DT 08-AUG-2007 (Rel. 12.07, Last updated, Version 2) XX DE Copia-like LTR retrotransposon. XX KW Copia; LTR Retrotransposon; Transposable Element; KW endogenous retrovirus; Non-LTR retrotransposon; COPIA superfamily; KW TREP1162; TREP730; Katarina; HORPIA; Copia1_HV; Copia1_HV_LTR; KW Copia1_HV_I. XX OS Hordeum vulgare OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Hordeum. XX RN [1] RP 1-323 RA Wicker T.; RT "Direct submission."; RL Direct Submission to Repbase Update (from TREP) (08-JAN-2003). XX DR [1] (Consensus) XX SQ Sequence 323 BP; 100 A; 71 C; 73 G; 79 T; 0 other; tgtagatgtt aatcatgttg ctcatgtagg attaggaaag aaagccaaac cgagtcctag 60 tagtattagg attcctagtc ctagtctatt tccgtaggcc cttggtggac gtgtataaaa 120 gacaccctag gggtgttgat tgtaacacca gaaaaacgaa aagcaataca aagcaaaagc 180 tcgacacggg cctttagcca tcaaatccat cgatcagttt ttattcgtgt cgctagttac 240 gcaagttccg tcaagtagcc ggccgaagca agaattgtgt aggcacgcct gtacagctac 300 atacgcacgt tcaaaagcca aca 323 // ID PREM2_ZM_I repbase; DNA; GRAS; 6933 BP. XX AC AF090447; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 11-JUL-2003 (Rel. 8.06, Last updated, Version 2) XX DE Zea mays copia-type retrotransposon PREM2_ZM_I, internal region. XX KW Copia; LTR Retrotransposon; Transposable Element; KW COPIA superfamily; internal region; target site duplications; KW PREM2_ZM_I. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-6933 RA Song R., Llaca V. and Messing J.; RT "Direct submission."; RL Direct Submission to Genbank (04-SEP-1998). XX RN [2] RP 1-6933 RA Llaca V., Lou A., Young S. and Messing J.; RT "Direct submission."; RL Direct Submission to Genbank (10-NOV-1998). XX RN [3] RP 1-6933 RA Song R., Llaca V. and Messing J.; RT "Direct submission."; RL Direct Submission to Genbank (12-APR-2001). XX RN [4] RP 1-6933 RA Song R., Llaca V. and Messing J.; RT "Direct submission."; RL Direct Submission to Genbank (24-APR-2001). XX DR Genbank; AF090447; Positions 58934 52002. XX SQ Sequence 6933 BP; 2171 A; 1455 C; 1541 G; 1766 T; 0 other; attggtatca gagcccggtg cttcattaga gcctaaccgc tcgaagtgat gtcgggagat 60 cacgccaaga aggagatgga gaccggcgac gacaagccca ctacaagcca agggagcact 120 tcatcttcat cgaaagagtc ccgcaccaag agaagagaga agaaaaagaa atcctccaag 180 cggaaggaga aaagatcttc ctcttctcac cataaggaga agaaggaaaa atcttctcac 240 aagccgcatc ggagtgggga caagcacaaa aggatgagga aggtggtctt ctacgagacc 300 gacacttcat cgacctccac ctccggctcc gacgcggcgt ccgtcacttc taagcgccaa 360 gagcgcaaga agtatagtaa gatcccccta cgctaccctc gcattcctaa acatacacct 420 ttactttccg tcccattagg caaaccacca acttttaatg gtgaagatta tgctatgtgg 480 agtaatttga tgcgatttca tctaacctct ctccacaaaa gaatatggga tgttgttgag 540 tatggtgtac aggtaccatc aataggggat gaggactatg acacggacga agtggcccaa 600 atcgagcact tcaactccca agccgcaacc atcctccttg cctccctaag caaggaggaa 660 tacaacaaag tacaaggatt gaagaacgcc aaggagattt gggacctact caagacggcg 720 cacgagggtg atgaactcac caagatcacc aagcgggaaa cgatcgaggg ggagctcggt 780 cgcttccgtc ttcgccaagg ggaggagccg caagacatgt acaaccggct caagaccttg 840 gtgaaccaag tgcgcaacct cggaagcaca aaatgggatg accacgaagt ggttaaggtt 900 attctaagag ctcttatttt ccttaacccc acacaagttc aattaattcg tggtaatcca 960 agatatccac taatgacccc cgaggaagtc atcgggaatt ttgttagctt tgaatgcatg 1020 attaagggct ccaagaagat caatgagctt gatgagcctt ccacatccga ggcgcaaccc 1080 gtggccttca aggcaacgga ggaggagtct acaccaagta gacaaccaat tgacgcctcc 1140 aagctcgaca acgaggagat ggccctaatc atcaaaagct tccggcaaat cctcaagcaa 1200 cggaaaggga aggactacaa atcccgttcc aagaaggttt gctacaagtg tggtaagccc 1260 ggtcacttca ttgctaaatg tccattatca agtgatagtg acagggacaa cgacaagaag 1320 ggcaagagga aggaaaagaa gaagtactac aagaagaagg gcggcgatgc ccatgtttgt 1380 cgggagtggg actccgacga aagctcaagc gactcctccg acgacgagga cgccgccaac 1440 atcgccatca ccaaaggcct cctcttcccc aacgtcggcc acaagtgcct catggccaag 1500 gacggcaaaa agaaggtaaa atcaaagtcc tccactaaat atgaaacatc tagtgatgag 1560 gatgataaaa atgaggagga taacttgcgt attctttttg ccaaccttaa catggaacaa 1620 aaagaaaaat taaatgagct aattagtgct atccatgaaa aggatgatct cttggactcc 1680 caagaggact tcctaatcaa ggaaaacaag aaacatgtta aggttaaaaa tgcttatgct 1740 ctagaaagag aaaaatgtga aaaattatct agtgagctaa gcacttgcca tgagatttta 1800 gacaacctta gaaatgaaaa tgctaatttg ttggctaagg ttgattctca tgtttgcatt 1860 gatcctagaa ataatgatgt tgatttgctt gctaggattg atgaattgaa tgcttccatc 1920 gctagcctta gaaatgagaa tgagaaatta attgctaagg ctaaggattt tgatgtttgc 1980 aatactacta tttctgacct tagaactaag aatgatttgt tgcatgctaa ggttattgaa 2040 ttaaagtctt gcaaaccctc tacatctact attgagcatg tgtccatttg cactagatgt 2100 agagatatta atgttgatgc tatccatgat caccttgcct taattaaaaa acaaaatgat 2160 cacatagcac aacttaatgc taaaattaga gagcatgact tagaaaatga aaaatttaaa 2220 ttggctagaa gcatgctcta taatgggaga cgcccgggca ttaaggacgg cattggcttt 2280 caaaggggag acaatgtcaa aattaatgcc cctcctaaga acttgtctaa ctttgttaag 2340 ggcaaggctc ccatgcctca ggataacgag ggttacattt tgtaccctgc cgggtatcct 2400 gagaataaga ttaagaaaat tcattctagg aagtctcact ctggccctaa ttatgctttt 2460 atgtataagg gtgagacatc tagatctagg caaccaaccc atgccaagtt gcctagaaag 2520 aaaactatta atgcatcaaa tgatcatgcc atttcattta aaacttttga tgcatcttat 2580 gtgttgacta gcaaatctgg caaggtagtt gccaaaattg ttgggggcaa acacaagggc 2640 tccaagactt gtgtttgggt acccaaagtt cttgtatcta atgctaaagg acccaaaacc 2700 gtttgggtac ctaaaacaaa gaactaaact tgttttgtag gtttatgcat ccgggggcac 2760 aagttggata ctcgacagcg gatgcacaaa ccacatgacc ggggagaaaa ggatgttctc 2820 ctcatatgag aaaaaccagg atccccaacg agctatcaca ttcggggatg gaaatcaagg 2880 tttggtcaaa ggtttgggta aaattgctat ttcacctgac cattccattt ccaatgtttt 2940 tcttgttgat tcattagatt acaacttgct ttctgtttcc caattatgtc aaatgggcta 3000 caactgtctt tttactgata taggtgtcac tgtctttaga agaagtgatg attcaatagc 3060 atttaagggt gtgttagaag gtcagctata cttagtagat tttgatagag ctgagctcga 3120 cacatgttta attgctaaga ctaacatggg ttggctctgg caccgccgac tagcccatgt 3180 tgggatgaag aatcttcata agcttctaaa gggagagcac attttaggac taaccaatgt 3240 tcattttgag aaagacagga tttgtagcgc atgccaagca gggaagcaag ttggcactca 3300 tcatccacac aagaacataa tgacgactga caggccactg gagctcctac acatggatct 3360 attcggcccg atcgcttaca taagcatcgg cgggagtaag tactgtctag ttattgtgga 3420 tgattattct cgcttcactt gggtattctt tttacaggaa aaatctcaaa cccaagagac 3480 cttaaaggga ttcttgagac gagctcaaaa tgagttcggc ttaaggatca agaaaataag 3540 aagcgacaat gggacggagt tcaagaactc tcaaattgag agcttccttg aggaggaggg 3600 catcaagcat gagttctctt ctccctacac gccacaacaa aatggtgtag tggagaggaa 3660 gaatcgaact ctattggaca tggcaagaac catgcttgat gagtacaaga caccggaccg 3720 gttttgggcc gaagcggtca acaccgcctg ctacgccatc aaccggttat atcttcaccg 3780 aatcctcaag aagacatcat atgaactcct aaccggtaaa aagcccaaca tttcatattt 3840 tagagttttt ggtagcaaat gcttcattct tattaaaaga ggtagaaaat caaaatttgc 3900 tcctaaaact gtagaaggct ttttacttgg ttatgactca aacacaaggg catatagggt 3960 ctttaacaag tccactggac tagttgaagt ctcttgtgac gttgtgtttg atgaaactaa 4020 cggctctcaa gtggagcaag ttgatcttga tgagataggt gaagaacagg ctccatgcat 4080 cgcactaagg aacatgtcca tcggggatgt gtgtcctaag gaatccgaag agcctccaag 4140 tacacaagat caaccatcct cctccatgca agcatctcca ccaactcaaa atgaggatga 4200 ggctcaaaat gatgaagagc aaaatcaaga agacgagcca cctcaagatg atagcaatga 4260 tcaaggggga gatacaaatg atcaagaaaa ggaggatgag gaagaaccaa gaccgccaca 4320 cccaagagtc caccaagcaa tccaacgaga tcaccccgtc gacaccatcc tcggcgacat 4380 tcataagggg gtaactactc gatctcgggt tgctcatttt tgtgaacatt actcttttgt 4440 ttcctctatt gagccacaca gggtagagga agctctccaa gattcggatt gggtggtggc 4500 aatgcaagag gagctcaaca atttcacaag gaatgaggta tggcacttag ttccacgtcc 4560 taaccaaaat gttgtaggaa ccaaatgggt cttccgcaac aagcaagatg agcatggagt 4620 ggtgacaagg aacaaagctc gactcgtggc caaagggtat tcacaagtcg aaggtttgga 4680 ttttggtgaa acctatgcac ccgtagctag gcttgagtca attcgcatat tattggccta 4740 tgctacttac catggcttta agctctatca aatggacgtg aaaagtgcct tcctcaacgg 4800 accaatcaag gaagaggtct atgttgagca acctcccggc tttgaagaca gtgagtaccc 4860 taaccatgtc tataggctct ctaaggcgct ttatgggctc aagcaagccc caagagcatg 4920 gtatgaatgc cttagagatt tccttattgc taatggcttc aaagtcggca aggccgatcc 4980 tacactcttt actaaaactc ttgaaaatga cttgtttgta tgccaaattt atgttgatga 5040 tattatattt gggtctacta acaagtctac atgtgaagag tttagtagga tcatgacaca 5100 gaaattcgag atgtcaatga tgggggagtt gaagtatttt ctaggattcc aagtcaagca 5160 actccaagag ggcaccttca tttgccaaac aaagtacact caagacattc taaccaagtt 5220 tgggatgaag gatgccaaac ccatcaagac acccatggga actaatgggc atctcgacct 5280 cgacacggga ggtaagtccg tggatcaaaa ggtataccgg tcgatgattg gttcattgct 5340 ttatttatgt gcatctcgac cggacattat gctttccgtt tgcatgtgtg caagattcca 5400 atccgaccct aaggaatcac accttacggc cgtaaaacga atcttgagat atctggctta 5460 tactcctaag tttgggcttt ggtaccctag gggatccaca tttgatttaa ttggttattc 5520 ggatgccgac tgggcggggt gcaaaatcaa taggaagagc acatcgggga cttgccagtt 5580 cttgggaaga tccttggtgt cttgggcttc aaagaagcaa aattcggtcg ctctttccac 5640 cgccgaagcc gagtacattg ccgcaggaca ttgttgcgcg caattgcttt ggatgaggca 5700 aaccctgctg gactacggtt acaaattaac caaagtccct ttgctatgtg ataatgagag 5760 tgcaatcaaa atggccgaca atcccgtcga gcatagtcgc actaagcaca tagccattcg 5820 gtatcatttt cttagggatc accaacaaaa gggggatatc gagatttctt acattaatac 5880 taaagatcaa ttagccgata tctttaccaa gccacttgat gaacaatctt ttaccagact 5940 taggcatgag ctcaatattc ttgattctag aaatttcttt tgctaagctt gcacacatag 6000 ctcttttgaa tacctttgat catatctctt ttatatgcta tgactaatgt gttttcaagt 6060 ctatttcaaa ccaagtcata ggtatattga aagggaattg gagtcttcgg cgaagacaaa 6120 ggcttctact ccgcaactca tacttcgcca ccactccgag caactctctc ttctttgggg 6180 gagaaatgag catcaaagaa aaggacttca tccttggggg agagagtaaa agctcaaacg 6240 caagaggact tcgtctttgg tataatctta actcacttat ttatgaccaa aggggaagat 6300 tgcacttcag agggctctaa tgattccgtt tttggcgatt catgccaaaa agggggagaa 6360 atgagcccaa agcaaaagga ccgcaccacc accaaattca aaaacttagt gctttccaaa 6420 agtctttatc atctggtatc ctattgtgtt caaaaggggg agaaagtagt atttcaaaaa 6480 tggtatatca aaaccctctt gaacactaag aggtggatct cttttagggg gagttttgtt 6540 tagtcaaagg aaaagcattt gaaatagggg gagacaattt caaatcttga aaatgctttg 6600 caaactctta ttcatgtacc tttgactatt tgcaaaagat ctttaaaatg gatttacaaa 6660 aagaatttgc aaaaacaaaa caagtggtgc aaacgtggtc caaaatgtaa tataagaaag 6720 aaacattcct tgcatatctt gtaagtagtc atattggcta aattccaagc aacctttgca 6780 cttattttat gcaaactagt tcaattatgc acttctatat ttgctttggt ttgtgttggc 6840 atcaatcacc aaaaaggggg agattgaaag ggaattaggc ttacaccttg ttcctatata 6900 attttggtgg ttgaattgcc caacacaaat ctt 6933 // ID Caulimovirus-1_BD-LTR repbase; DNA; GRAS; 548 BP. XX AC ADDN01000147; XX DT 09-MAR-2010 (Rel. 15.03, Created) DT 09-MAR-2010 (Rel. 15.03, Last updated, Version -1) XX DE LTR retrotransposon from the purple false brome: long terminal DE repeat. XX KW Caulimoviridae; Integrated Virus; Caulimovirus-1_BD-LTR. XX OS Brachypodium distachyon OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Brachypodieae; Brachypodium. XX RN [1] RP 1-548 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the purple false brome."; RL Repbase Reports 10(3), 248-248 (2010). XX DR Genome; ADDN01000147; Positions 189375 189922. XX SQ Sequence 548 BP; 176 A; 92 C; 111 G; 169 T; 0 other; tgtaacataa ggacgggaag gtagtaaggt aattacctta tctttatgta aacccttcgg 60 gggttcccga aaggaaaaac cgtatgtaag ctatattata aaatgaagta gtttagtatt 120 tcccttgtct tgttaaatgt gtttatacgg gtgtgtgctt atgctaggga tcctatagga 180 gaaacctctg cgtgtagttc tctgttaagc ctctcgtagg gcgtttgaat gagaaccttg 240 taaccgtaga gaagtgttcc cttcgggtgg aactgcttgg gaagacgata agaaatcacc 300 cctataaact tgtttaagaa cacctaggga aataaactta gctactcctg aagcaatata 360 gtgaaaaata cgtgagtact gagtaggatt tttacaccgc tgcacgaccg tcggtagctc 420 cgttggcctc accagtctta aaagatcctg taaaagataa tcataataat taaatattaa 480 tcaacatata atttaatatt agtcgatata acctcaatat ttagtatcta ataattatta 540 atattgca 548 // ID BARE1_HV repbase; DNA; GRAS; 12089 BP. XX AC Z17327; XX DT 04-MAR-1998 (Rel. 3.02, Created) DT 04-MAR-1998 (Rel. 3.02, Last updated, Version 1) XX DE H.vulgare DNA for BARE-1 copia-like retroelement. XX KW Copia; LTR Retrotransposon; Transposable Element; BARE-1; KW BARE1_HV; HVBARE1; Copia element; retroelement. XX OS Hordeum vulgare OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Hordeum. XX RN [1] RP 1-12089 RA Manninen I. and Schulman H.A.; RT "BARE-1, a copia-like retroelement in barley (Hordeum vulgare RT L.)."; RL Plant Mol. Biol 22(5), 829-846 (1993). XX RN [2] RP 1-12089 RA Schulman A.; RT "BARE1_HV."; RL Direct Submission to Genbank (22-OCT-1992)Schulman A., Institute RL of Biotechnology, University of Helsinki, P.O. Box 56, RL Viikinkaari 9, Biocentre 1, FIN-00014 Helsinki, Finland. XX DR GenBank; Z17327; Positions 309 12397. XX SQ Sequence 12089 BP; 3033 A; 2633 C; 3048 G; 3375 T; 0 other; tgttggaatt atgccctaga ggcaatgata aataatttat tattataatt catgtatcaa 60 gataatcgtt tattatccat gctataattg tgttgaatga agacttagat acatgtgtgg 120 atacatagac aaaatactgt ccctagcaag cctctagttg gctagccagt tgatcaagga 180 tagtcagggt cttctggcta tgtacaaggt gttgttgctt gatgactgga tcacatcatc 240 gggagaatca tgtgatggac tagacccaaa ctaatagacg tagcatgttg atcgtgtcat 300 tttgtagcta ctgttttctg catgtcaagt atttattcct atgaccatga gatcatataa 360 ctcactgaca ccggaggaat gctttgtgtg tatcaaacgt cacaacgtaa ctgggtggct 420 ataaagatgc tctacaggta tctccgaagg tgtccgttga gttagtatgg atcaagactg 480 ggatttttca ctccgtgtga cggagaggta tctcggggcc cactcggtaa tacaacatca 540 cacacaagcc ttgcaagcaa tgtgacttag ggtaagccac gggatcttgt attacgggac 600 aagtaaagag acttgccggt aaacaagatt gaaataggta tgcggatact gacgatcgaa 660 tctcggggca agtaccatac cgaaggacaa agggaatgac atacgggatt atatgaatcc 720 ttgccactga ggttcaaacg ataagatctt cgtagaatat gtaggatgca atatgggcat 780 caaggtcccg ctattggata ttgaccgagg agtccctcgg tcatgtctac atagttctcg 840 aacccgcagg gtctgcacac ttaaggttcg acgttgtttt atgcatattt gagttatatg 900 gttggttacc gaatgttgtt cggagtcccg gatgagatca cggatgtcac gagggtttcc 960 gagatggtcc gaaaatgaag attgatatat aggatgacct catttgatta ccggaaaggt 1020 ttcggcatta ccgggaatgt accgggagtg acgaatgggt tccggatgtt caccggggag 1080 ggggggcagc ccactccagg gaagcccata ggccttaggg gtgccacacc agcccttagt 1140 gggctggtgg gcaagcccaa gaaggctcct gcgcaggata agagaaaatc aaacagaaaa 1200 ggaaaaaaaa gggaagtggg gaaagagagg aggactccac cttccagtcc tagttggact 1260 aggattggag gaggaatcct cctcccccct tcgaccgaac cccttggggc tccttgagcc 1320 tcaaggcaag gcccctcccc tccctcctat atatactgag gtattagggc tgatttgaga 1380 caacttttcc accgcagccc gaccacatac ctccacggtt tttcctctag atcgcgtttc 1440 tgcggagctc gggtggagcc ctgctgagat tagatcacca ccaacctccg gagcgtcgtc 1500 aggcttccgg agaactcatc tacctttccg tctctcttgc tggatcacga aggccgagat 1560 caccatcgtg ttgtacgtgt gctgaacgcg gaggtgtcgt ccgttcggca ctagattaga 1620 gcggatcgtg ggacggatcg cgggacggtt cacggggcgg atcgagggac atgaggacgt 1680 tccactacat caaccgcgtt tattaacatt tctgttatgc gatctacaag ggtacgtaga 1740 tttgaaatcc ccctcataga tggacatcac catgacaggt cttcgtgcgc gtaggaattt 1800 ttttgtttcc catgcgacgt tccccaacat tggcatcgtg agctaggttc atgcgtagat 1860 gtcatctcga gtagaacaca aatttttttg tgggcggtga tgtgtgattt gctgccctcc 1920 ttagtctttt cttgattccg cgatattgtt ggatcgaagc ggctcggacc gacattactc 1980 atacgcttac gagaggctgg tttcatcgct atgagcaacc ccgttgctca aagatgactg 2040 acgagtgtcg gtttctccaa ctttagttga atcggatttg accgaggagg tccttggatg 2100 aggttaaata gcaattcata tatctccgtt gtggtgtttg cgtaagtaag atgcaatcct 2160 actagatacc catggtcacc acgtaaaaca tgcaacaaca attagaggac gtctaacttg 2220 tttttgcagg gtatgcttgt gatgtgatat ggacgacgat gtgatgtgat atattggatg 2280 tatgagatga tcatgttgta atagttaata tcgacttgca cgtcgatggt acggcaaccg 2340 gcaggagcca tagggttgtc tttaaactaa tgtttgtgct tgcagatgcg tttactatat 2400 tgctaggatg tagctttagt agtaatagca tgagtagcac gacaaccccg atggcgacac 2460 gttgatggag atcatggtgt ggcgccggtg acaagaagat catgccggtg ctttggtgat 2520 ggagatcaag aagcacgtga tgatggccat atcatgccac ttatgaattg catgtgatgt 2580 taatcctttt atgcacctta ttttgcttag aacgacggta gcattatgag gtgatctctc 2640 actaaaattt caagacgaaa ttgtgttctc gccgactgtg caccgttgct acagtttgtc 2700 gtttcgagac accacgtgat gatcgggtgt gatagactga acgttcacat acaacgggtg 2760 caaaacagtt gcacacgtgg aacactcggg ttaagcttga cgagcctagc atgtggagac 2820 atggtctcag aacacatgag accgaaaggt cgatcatgaa tcatatagtt gatatgatta 2880 gcatagggat gcttaccact gaaactatcc tcaactcacg tgatgaccgg acttgagcta 2940 gtggaattgg atcatgaacc actcaaatga ctagagatat gtactttttg agtgggagtt 3000 tagcaagtaa tttgattaag ttaaactcta attatcttga acatagtcta agtccacttt 3060 gaatatattt gtgttgtaga tcaatggctc acgcgagagt caccctgaat tttaatacgt 3120 tcctagagaa agctaagttg aaagatgatg gaagcaactt tgtagactgg gctcataatc 3180 taattaagtt gctcctgcaa gctgggaaga aggattatgt ccttaatgct gcgctaggag 3240 atgaaccacc cgctacggct gaccaagatg ttaagaacgc ttggttaaca cgtaaggagg 3300 actactcagt agttcaacgt gcagtcttgt atggcttaga gccgggactt caacgtcgct 3360 ttgagcgtca tggagcatat gagatgttcc aggagttgaa gtttatcttt cagaagaaca 3420 cccggatcga gaggtatgag acctttgata aattctatgc ttgcaagatg gaggagaatt 3480 cgtctgtcag tgaacatgtg ctcaaaatgg ctgggtactc aagccgtcta gctgagctgg 3540 ggattgaact cccgcaagag gctatcactg acagaattct tcaatcactg ccgccaagct 3600 ataagggctt tttgttgaac tacaacatgc aagggatgaa caagtcaccc ggcgagttgt 3660 ttgcgatgct gaaagtcgta gagtgagaac tccgtaaaga gcatcaagtg ttgatggtga 3720 ataagaccac tagtttcaag agaaacgaca aaggaaagaa gggtagttcg aagaagagcg 3780 gcaagcctgt tgccaatccg acgaagaaac ccaaagctgg tcctaagcct gaaacggagt 3840 gctattattg caagggtatg ggtcactgga agcgcaactg ccccaagtat ctggctgata 3900 agaaggcggc caaagaaaaa tcaggtatat ttgatataca tgttattgat gtgtacttaa 3960 ccagttctcg tagtagtgcc tgggtattcg ataccggttc tgttgctcat atttgcaact 4020 caaaacagga actgcggaat aagcgaaggc tggcgaagga tgaagtgacg atgcgcgtgg 4080 gaaatggttc caaggttgat gcaatcgccg tcggcacaat ttcacttcag ttaccatcag 4140 gattagttat gaacttaaat aattgttatt tagtgtctgc gttaagcatg aacattatat 4200 ggatactgtt tattgcgaga cggttactcg tttaagtcag agaataatgg ttgctctgtt 4260 tctatgagta atatctttta tggtcatgca cccattgtga gaggattttt catattgaat 4320 cttgatagtg ataatacaca tatacataac attgagacca aaagagttag agttaacaat 4380 gatagcgcca tgtttttatg gcactgccgc ttaggtcata ttggtgtaaa gcgcatgaag 4440 aaactccata ccgatggact tttggagtca cttgacacgt gcgaaccatg cctcatgggc 4500 aagatgacta aaactccgtt ctccggaaca atggagcgtg caagtgactt gttggaaatc 4560 atacataccg atgtgtgtga tccgatgagt gtggaggcac gcagcggata tcattatttt 4620 ctcaccttca ctgacgattt gagtagatat ggttatgtct acttgatgaa gcacaagtct 4680 gaaacatttg aaaagttcaa gcaatttcag agtgaagttg aaaatcatta taacaagaag 4740 atcaagttcc tacggtctga tcgtgggggt gaatatctga gtttcgagtt tggtgctcac 4800 ttaagacaat gtggaattgt ttcacagttg acaccgcctg gaacaccaca gtgtaatggt 4860 gtgtccgaac gtcgtaatcg tactttatta gagatggtgc gatctatgat gtatattacc 4920 gatttgccgt tatcgttttg gggttattta ttaaaaacag ctgcattcac tttaaatagg 4980 gcaccatcaa aatctgttga gatgacacca tacgaactgt ggtatggcaa tagaccaaag 5040 ttgtcgtttc ttaaagtttg gggatatgat gcttatgtca aaaagcttca gcctgaatat 5100 ctggaaccca aagcggaaaa gtgcgtcttc ataggttacc cgaaagagac agttgggtat 5160 accttccatc tcaaatccga gggcaaagtg tttgttgcta agaacgaagc ttttctcgag 5220 aaggagtttc tctcgagaga attgagtggg aggaagatag aacttgatgc ggttgtcgaa 5280 cctctcatcc ctctggatgg tggcgcaagg caaggagaaa cccctgtcgt tgtgatgccg 5340 ggataggagg aagttaatga tgatgatcat gaaactccgg atcaagttcc tgtcgaatct 5400 cgcaggtcga cgagaccgcg tactactcga gagtggtacg gtaatcccgt cttatcaatt 5460 atgttgttgg acaacaatga acctacgaat tatgaagaag caatgatggg cccagattcc 5520 aacaaatggc tggaggccat gaagtccgag ataggatcta tgtatgaaaa caaagtgtgg 5580 actttggaag tactacctga aggctgcaag gctattcaga acaaatggat ctttaagaag 5640 aagacgggcg ctgacagtaa tgtgaccgtt tataaagctt gacttgtggc aaagggtttt 5700 tcacaagttc aagggattga ctacgatgag acattctcac ccgtagcgat gcttaagtcc 5760 gtccgaatca tgttagcaat agctgcattt ttcgattatg aaatctggca gatggatgtc 5820 aaagcggcgt tccttaacgg tctccttaag gaagagttgt atatgatgca acccgaaggt 5880 tttgtcgatc ctaaaaatgc taacaaagcg tgcaagctcc agggatccat ttatggactg 5940 gtgcaagcat ctcgaagttg gaataaacgc tttggtgagg tgatcaaagc atttgggttt 6000 atacaagtgg ttggagaatc ttgtatttac aagaaggtga gtgggagctc tgtggcgttc 6060 ctaatactat atgtggatga catattactg attggaaacg gcgtggagtt tttggagaac 6120 ataaaggatt acttgaataa aagtttctct atgaaggacc taggagaagc tgcttacatt 6180 ctaggcatta agatctatag ggatagatca taacgcgtga taggactttc acaaagcacg 6240 taccttgata aagttttgaa gaggttcaaa atggaacagt ccaagaaggg gctcttgcca 6300 gttttacaag gtacgagatt gagtaagact cagtgcccag caactgataa agatatagag 6360 catatgagca ccgtccccta tgcttcagcc ataggttcta tcatgtatgc aatgttgtgc 6420 attagaccgg acgttagcct ggccataagt atggcaggca ggttccagag taatccagga 6480 gtggatcact ggatggcggt caagaatatc ctgaagtacc tgaaaaggac tacggagatg 6540 tttctcgtat atggaggtga caaagagctc gccgtaaagg gttacgtcga tgcaagcttt 6600 gacacagatc cggacgactc taagtcgcag accggatatg tatttattct taatgggggt 6660 gtggtaagct ggtgcagttc caagcaaagc gtcgtagctg attctacatg tgaagcggag 6720 tacttggctg cctcggaggc aactaaggaa ggtgtgtgga tgaagcagtt aatgacggat 6780 cttggagtgg tgtcgagcgc actgaatcca ataaccctgt tttgtgacaa catgggtgtc 6840 attgccttag caaaggaacc gcagtttcac aagaatacca tacgcatcaa acgacgcttc 6900 aacctcatcc gcgactacgt cgaggaggag gacgtgaata tatgcaaagt gcacatggat 6960 ctgaatgtag cacccgctga ctaaacctct tccacgggca aagcatgatc aacaccagaa 7020 gtgtatgggt gttagattta ttataatgta attcgcatgg tgatgtgagg gctagattat 7080 tgactctagt gcaagtggga gactgtcgga attatgccct agaggcaatg ataaataagt 7140 tattattata attcctgtat caagataatc gtttattatc catgctataa ttgtgttgaa 7200 tgaagactta gatacatgtg tggatacata gacaaaacac tgtccctagt gtgacagccc 7260 gatgccgacg ttccagaaga ttcccccctt tatcccgttt ttgtcgtgtg tctattttat 7320 tttgtcgcat catcatcgca tcattcgcat catctgcatt gcatcggcac cccgttgccg 7380 ccagttttca aaaacttgca tccgttggta gttgccggtt ctcgtcgttg cccattctga 7440 gtccgaccac actcccacgc gtccgcggca tcgtcaaacc ttgttttaaa agtgtgagta 7500 aaactttccc tgattgggtt gagattttac gcgcggtctt tattagatat agctaggctg 7560 cctgtcgaat ttcgtcgcga tcggggttcg tatggtaccc gaacggtcga ccgtagcggc 7620 accgtattcg gtctaccgtc ggacgtttgt cggtgtttta aaaattcgtt gccgcaccgc 7680 ccattctccc tctcgtccct ggatatcccc tctacatggc ctcgtaaccg ttcccgcgtt 7740 cagaattagc cgaatccgac cgcgcggttg aaaccggggc gggatttcgc taaacctagc 7800 cccctcttct ctatatatag cccctcctac tagtattttg gacagcagcc cccctgcctc 7860 attttgtgcg ccacctaccc cgaaacccta gctcccgcag cctctctctc ccaccagcgc 7920 cgccggcccg ccaggcccga tccagcccgc cttgggccca gattcgccgc ccccgcgagc 7980 tcccccagct ccagcaccat ggcctcccga gctccctgcc cacctcgcgt gcgcgccgcc 8040 ccagctcccc gtgtcgcccc gcagtcgccg ccggcagctc gccggagagc cccgccggac 8100 ccaggccgga gctccctatg ctcctctctc ttcttctctc cctcacccgt atctctctct 8160 tcccgcaggt tccgaggtcg ccgccaccgc cccgttctac gcctccgccg cgtggatccg 8220 gtgtggagat gacagatccg gccggcctcc gccgcccggt ccgttttcgg ccgctccagt 8280 ctcgctcgtg acccgctgcc atcgtcaggg tcgttgcgag gagccatggc gctgcgtgct 8340 gtccatcggg agatcgagcc tccgccaccg cctcgccagc tcgtgggccg cgcaggagca 8400 gccaggctgc cagatccggc ccagctaggt agccccccca tcggcctcct ccaggcttcc 8460 tccaccgcca gcccaggccg gtgtgcatcc tccgcccgag gcccagctcc atttccccag 8520 atctggccca ggtgcacttg gtgagcgcag ctatttcccc gcccccgttg caacattact 8580 actttgcgct cgttgcctct taggcccagt taggaattcg gcccattatt ttgttttatt 8640 ttaggtttgc gatctatttt ttttgagggt ttagaatata ttcgatcgcc cgtatctttt 8700 tattcgtgtg tcggatcgga atgtgtagca tatggatttt gtgtagaatt ccacgtagat 8760 ttcgaatttc taacttgcat aattatttga ggcagtttga tgtgcctaat gcatcgtttt 8820 gcgtgctgtt tcaataggat ccgttctgta gttatttctc gtgcgtgtcc ggattgcccg 8880 tataccgtag attaaatgtc catgttttag ggaccatttt tccatgtatt ttagagcggt 8940 cattgtattt ttgcgtgtag ggaattgccg ctaatttatt ttcccgcgta taggtttttt 9000 ctcgcattta tgtgtggcat tattttgtat tgcaacccca catattttat atgtttccgg 9060 ggtagaaaaa tccattggat ttttctgtgc aattagtttt agcttttgag taagttagtt 9120 cttgagatat ttttccgtgt tgccctcttg tcattttcgt aggatttatt ccgtgcttcg 9180 tttgatcaag ttgtcaactg gagagttgat cttgggtatt tactctagcc cctggtattt 9240 ttggttgcaa tgtaaatgca tgtttaggtg tggtttgatt gctctcaagt tgctagaaat 9300 agtgctgatt tggaggagct gaaatatttc taagtctgga atctgttatt attttgttgt 9360 tgtcttgtct tgtttctatc ttttgttctg tagctctttt gaggttggtg caatggagtt 9420 agtggtaacc cttgtgattc tctagcatgc tgtgaatttt catgccattt ggagacctgt 9480 atcttatgat tttctgctgt caatatggct tcagatcgaa aactgcactt tcatgaggtg 9540 taattttcac taagtttgaa atagtgtgtg agatgccatt ttgtgccttc tttccctagt 9600 gacggaaagt cgtgcccgcg gttatgtggc aacgtggaag atttgtttaa cactggttct 9660 agataacttg aagttaactt aattaaaata tgctaactat gtgtgtaacc gtgactgtct 9720 ctttcatgag ttatttctcc gatcgaggac acggtggggt tatgtctgac gtaggtaggt 9780 gtttcggatc attcatttga tcatcagtag tcacgtccgc tatgcgtaga tcttcccact 9840 cttatttctt gtactcgtaa gctagccacc aaatatatgc ttagccgctg ctgcaacctc 9900 accacctaac catgcctcac ccattaagct ttgctagtct tgataccttt ggaaatgaga 9960 ttgctgagtc ccctgtggct cacagattac tacaacacca gttgcaggta catgtaaagg 10020 ttatttgaca cgagcgcatt gattgttcat ttggagttgc ttcttcttct tcttcttcat 10080 cgatctagga tgggttccag gccggcagcc tgggatagca aggatggacg tcgttcttct 10140 tttgtcgttt gttttcgtcc gtagtcggac cctgctctta ctcttgatgt ttatgtaatg 10200 tattgatgtg actctgatgt agcttgtggc gagtgtaagc caattcaata tatatatctc 10260 atcttttcag tacatgtact tgtaacgata tccattcttg cgacacgacg agatgcgctt 10320 ctatccctga cgaggccttc gtgccaaatc gaggataggg tcgcatcttg ggcgtgacac 10380 ctagcaagcc tctagttggc tagcgagttg gtcaaggata gtcagggtct tctggctatg 10440 tacaaggtgt tgttgcttga tgactggatc acatcatcgg gagaatcatg tgatggacta 10500 gacccaaact aatagacgta gcatgttgat cgtgtcattt tgtagctact gttttctgca 10560 tgtcaagtat ttattcctat gaccatgaga tcatataact cactgacacc ggaggaatgc 10620 tttgtgtgta tcaaacgtca caacgtaact gggtggctat aaagatgctc tacaggtatc 10680 tccgaaggtg tccgttgagt tagtatggat caagactggg atttttcact ccgtgtgacg 10740 gagaggtatc tcggggccca ctcggtaata caacatcaca cacaagcctt gcaagcaatg 10800 tgacttaggg taagccacgg gatcttgtat tacgggacaa gtaaagagac ttgccggtaa 10860 acgagattga aataggtatg cggatactga cgatcgaatc tcggggcaag taacataccg 10920 aaggacaaag ggaatgacat acgggattat atgaatcctt ggcactaagg ttcaagcgat 10980 aagatcttcg tagaatatgt aggatcaaat atgggtatct aggtcccgct attggatatt 11040 gatcgaggag tccctcgggt catgtctaca tagttctcga acccgcaggg tctacacact 11100 taaggttcgg cattgttgta tgcgtatttg agttatatgg ttggttaccg aatgttgttc 11160 ggagtcccgg atgagatcac agacgtcatg agggtttccg gaatggtccg gaaacgaaga 11220 ttgatatata ggatgacctc atttgattac cggaaagttt tcggcattac cgggaatgta 11280 ccgggagtga cgaatgggtt ccggatgttc aacggggggg ggggggggga cagcccaccc 11340 cggggaagcc cataggcctt aggggtgcca caccagccct tagtgggctt gtgggcaagc 11400 ccaagaaggc ccctgcgcag gataagagaa aatcaaagag aaaaggaaaa aaaggggaag 11460 tggggaaaga gagaaggact ccaccttcca atcctagttg gactaggatt ggaggaggac 11520 tcctccgcct ccccccttcg ggcgaacccc ttggggctcc ttgagcctca aggcaaggcc 11580 cctcccctcc ctcctatata tactgaggta ttagggatga tttgagacaa cttttccacg 11640 gccgcccgac cacatgcctc cacggttttt cctctagatc gcgttcctac ggagctcggg 11700 cagagcctgc tgagattagc tcaccaccaa cctccggagc gccgtcacgc tgccggagaa 11760 ctcatctacc tctccgtctc tcttgctgga ttaagaaggc cgagatcatc gtcgtgctgt 11820 acgtgtgctg aacgcggagg tgtcgtccgt tcggcactag atcggagcgg atcttgggac 11880 ggatcgcgga acggttcgtg ggacggttcg tggggcggat caagggacgt gaggacgttc 11940 cactacatca accgcgttta ttaacgcttc tgctgtgcga tctacaaggg tacgtatatc 12000 tgaaatcccc ctcatagatg gacatcacca tgacaggtct tcgtgcgcgc gtaggaaatt 12060 ttttgtttcc catacgacgt ttcccaaca 12089 // ID CRM_INT repbase; DNA; GRAS; 5710 BP. XX AC AY129008; XX DT 08-JUL-2004 (Rel. 9.06, Created) DT 08-JUL-2004 (Rel. 9.06, Last updated, Version 1) XX DE Zea mays CRM centromeric retrotranposon, complete sequence. XX KW LTR Retrotransposon; Transposable Element; CRM_INT; KW internal sequence. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RA Zhong X.C., Marshall B.J., Topp C., Mroczek R., Kato A., RA Nagaki K., Birchler A.J., Jiang J. and Dawe K.R.; RT "Centromeric Retroelements and Satellites Interact with Maize RT Kinetochore Protein CENH3."; RL Plant Cell 14(11), 2825-2836 (2002). XX RN [2] RA Zhong X.C., Topp C. and Dawe K.R.; RT "CRM_INT."; RL Direct Submission to Genbank (03-JUL-2002)Plant Biology, RL University of Georgia, 2502 Plant Miller Sciences Building, RL Athens, GA 30602, USA. XX DR Genbank; AY129008; Positions 931 6640. XX CC Key Location/Qualifiers CC CDS 1023..5710 CC /codon_start=1 CC /product="gag-pol polyprotein" CC /protein_id="AAM94350.1" CC /db_xref="GI:22296822" CC /translation="MAGLEVDDASRNMPHSPRTKGIIQHFVRLVKTHTEGLDNDMQVT CC NEKMGQLEATQIDTNTKLANVEMTVAHIDKSLVALLRRFDEMHANTNGGRDEGAEGNW CC DDYVADTEQDDQEAPNRRRLRTNRRGMGGFHRREVHGNDDAFSKVKFKIPPFDGKYDP CC DAYITWEIAVDQKFACHEFPENARVRAATSEFTEFASVWWIEHGKKNPNNMPQTWDAL CC KRVMRARFVPSYYARDMLNKLQQLRQGTKSVEEYYQELQMGMLRCNIEEGEESAMARF CC LGGLNREIQDILAYKDYANVTRLFHLACKAEREVQGRRASARSNVSAGKSTPWQQRTT CC TSMTGRTLAPTPSPSRPAPPPSSSDKPRASSTNSATKSAQKPAGSASSVASTGRTRDV CC LCYRCKGYGHVQRDCPNQRVLVVKDDGGYSSASDLDEATLALLAADDAGTKEPPEEQI CC GADDAEHYESLIVQRVLSAQMEKAEQNQRHTLFQTKCVIKERSCRLIIDGGSCNNLAS CC SDMVEKLALTTKPHPHPYHIQWLNNSGKVKVTKLVRINFAIGSYRDVVDCDVVPMDAC CC NILLGRPWQFDSDCMHHGRSNQYSLIHHDKKIILLPMSPEAIVRDDVAKATKAKTENN CC KNIKVVGNNKDGIKLKGHCLLATKTDVNELFASTTVAYALVCKDALISIQDMQHSLPP CC VITNILQEYSDVFPSEIPEGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQ CC VQELLDKGYVRESLSPCAVPVILVPKKDGTWRMCVDCRAINNITIRYRHPIPRLDDML CC DELSGAIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMR CC LMNEVLRAFIGKFVVVYFDDILIYSKSMDEHVDHMRAVFNALRDARLFGNLEKCTFCT CC DRVSFLGYVVTPQGIEVDQAKVEAIHGWPMPKTITQVRSFLGLAGFYRRFVKDFSTIA CC APLNELTKKGVHFSWGKVQEHAFNVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGG CC VLLQEGKPVAYFSEKLSGSVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESL CC KHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSRRYTLLNQLDYKIFGL CC ETIKDQYVHDADFKDVLLHCKDGKGWNKYIVSDGFVFRANKLCIPASSVRLLLLQEAH CC GGGLMGHFGAKKTEDILAGHFFWPKMRRDVVRLVARCTTCQKAKSRLNPHGLYLPLPV CC PSAPWEDISMDFVLGLPRTRKGRDSVFVVVDRFSKMAHFIPCHKTDDATHIADLFFRE CC IVRLHGVPNTIVSDRDAKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLST CC MLRAVLKKNIKMWEDCLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSE CC KLNFDATRRAELMLKLHETTKENIERMNARYKFASDKGRKEINFEPGDLVWLHLRKER CC FPELRKSKLLPRADGPFKVLEKINDNAYRLDLPADFGVSPTFNIADLKPYLGEEVELE CC SRTTQMQEGE". XX SQ Sequence 5710 BP; 1613 A; 1025 C; 1334 G; 1738 T; 0 other; gttggtaatc agagcaaggt ttatcggtga gagatttact tttcttcgct gttttcttat 60 ctcctatagt ccagaaaaag ccaaaaaaat agtagattag ttttaccgca atcctataaa 120 ccattgagca tttactagta ctacttagtt agggcttgtt gagtttttgg ttgcatcggt 180 tgtgtcgagt tgctggtctt agtttattcc tttagagttt tgagttctac cacgttttgg 240 tcaccacgag atccaccatc accaaaaaca tctctggttc gtttttgcca ccacggatac 300 atatcatatc cgatttggaa gtttaaatac aatctggaaa gcttatctta tcttctttcc 360 aacggatctg accttatctc aaaattcgtt ctgagcgctc cgcaatcatc gtagagattt 420 ctggactttc tatattaaca agatttgtta aatctgattt aaaggggttg ttagcaatat 480 ctttattgtt tgggttgtca tagtgaaaaa aagggtttag gcccctgcaa aaaaaaacag 540 aagaagaaga aaaaaaaaga atagaaaaga aaaaaaagga aaagaagaag aagggggctg 600 aatctctaaa tctgttgttt ctctttgtgc tgtgctagtt gttctttttc agtgactacc 660 tttgtgccta ggctcacgtc tctagcctgg tttagcctag gaccagcaca gtaccaccgt 720 tgaacgatta ttcagcttgc ttttgtaact aacgtggtac tagtgtattc cttgcttcag 780 cccacctaca actctacata tttcgactac agtttgacag gtcgtgttgc tgcggcaccg 840 atacacttat tccacggttg cagacttgtt ggttgctgac ccctcctgtt gtgcaaggta 900 agaattggta agagcttgtg tggcaggttg agagtgagcg ccttgcagta gctacatcct 960 aatagttgta gagtttttat tccttcacat ttttttttct tgttgcctct gttcgtctaa 1020 ccatggcagg attggaggtt gatgatgctt ctcgtaatat gccacactct cctcgcacca 1080 agggtatcat acaacacttt gtaaggctgg tgaaaacgca cacggaaggt cttgataatg 1140 acatgcaggt gacgaatgaa aagatggggc aattggaggc cacacagatc gacacaaaca 1200 ccaaacttgc aaatgtggaa atgacagttg ctcatattga caagagcctt gtcgcactct 1260 tgaggcgatt tgatgagatg catgctaata ccaatggtgg gcgtgatgag ggcgccgaag 1320 gtaactggga tgactatgtt gctgatactg aacaagatga ccaagaagca cctaatcgcc 1380 ggcgactacg tactaaccgt agaggtatgg gtggttttca ccgacgtgag gtacatggta 1440 atgatgatgc ttttagtaag gttaaattta aaatacctcc ttttgatggt aaatatgacc 1500 ctgatgctta cattacttgg gagattgcgg ttgatcaaaa gtttgcatgc catgaatttc 1560 ctgagaatgc gcgggttaga gctgctacta gtgagtttac tgaatttgct tctgtttggt 1620 ggatagaaca tggtaagaag aatcctaata acatgccaca aacttgggat gcgttgaaac 1680 gggtcatgcg ggctagattt gttccttctt attatgcacg tgatatgtta aacaagttgc 1740 aacaattgag acagggtact aaaagtgtag aagaatatta tcaggaatta caaatgggta 1800 tgctgcgttg taacatagag gagggtgagg aatctgctat ggctagattt ttgggcgggt 1860 taaataggga aattcaggac atccttgctt ataaagatta tgctaatgta acccgattgt 1920 ttcatcttgc ttgcaaagct gaaagggaag tgcagggacg acgtgctagt gcaaggtcta 1980 atgtttctgc aggaaaatct acaccatggc aacagcgcac gactacgtcc atgaccggcc 2040 gtacactagc accaactccc tcgccaagtc gaccagcacc cccgccttcc tccagcgaca 2100 aaccacgtgc atcttccaca aattcagcaa ccaaatctgc ccagaaacca gcaggtagtg 2160 cctcttcagt agcctccacg ggtagaacaa gagatgttct gtgttatcga tgcaagggct 2220 atggacacgt gcagcgtgat tgtcctaatc agcgtgtttt ggtggtaaaa gacgatggtg 2280 ggtattcctc tgctagtgat ttggatgaag ctacacttgc tttgcttgcg gctgatgatg 2340 caggcactaa ggaaccaccc gaagaacaga ttggtgcaga tgatgcagag cattatgaga 2400 gcctcattgt acagcgtgtg cttagtgcac aaatggagaa ggcagagcag aatcagcgac 2460 atacgttgtt tcaaacaaag tgtgtcatta aggagcgttc atgtcgtttg atcattgatg 2520 gaggtagctg caacaacttg gctagcagcg acatggtgga gaagcttgca cttacgacca 2580 aaccgcaccc gcatccatat cacattcaat ggctcaacaa tagtggtaag gtcaaggtaa 2640 ccaagctggt acgaattaat tttgctattg gttcatatcg tgatgttgtt gactgtgatg 2700 ttgtgcctat ggatgcttgt aatattctgc taggtagacc atggcaattt gattcagatt 2760 gtatgcatca tggtagatca aatcaatatt ctctcataca ccatgataag aaaattattt 2820 tgcttcccat gtcccctgag gctattgtgc gtgatgatgt tgctaaagct accaaagcta 2880 aaactgagaa caacaagaat attaaagttg ttggtaataa caaagatggg ataaaattga 2940 aaggacattg cttgcttgca acaaaaactg atgttaatga attatttgct tccactactg 3000 ttgcctacgc cttggtatgc aaggatgctt tgatttcaat tcaagatatg cagcattctt 3060 tgcctcctgt tattactaac attttgcagg agtattctga tgtatttcca agtgagatac 3120 cagaggggct gccacctata cgagggattg agcaccaaat tgatcttatt cctggtgcat 3180 ctttgccgaa tcgtgcgcca tataggacaa atccagagga aacaaaagaa attcagcgac 3240 aagtgcaaga actactcgac aaaggttacg tgcgtgagtc tcttagtccg tgtgctgttc 3300 cggttatttt agtgcctaaa aaagatggaa catggcgtat gtgtgttgat tgtagggcta 3360 ttaataatat cacgatacgt tatcgacacc ctattccacg tttagatgat atgcttgatg 3420 aattgagtgg tgccattgtc ttttctaaag ttgatttgcg tagtgggtac caccagattc 3480 gtatgaaatt gggagatgaa tggaaaactg ctttcaaaac taagttcgga ttgtatgagt 3540 ggttagtcat gccttttggg ttaactaatg cacctagcac tttcatgaga ttaatgaacg 3600 aggttttgcg tgccttcatt ggaaaatttg tggtagtata ctttgatgac atattaatct 3660 acagcaaatc tatggatgaa catgttgatc acatgcgtgc tgtttttaat gctttacgag 3720 atgcacgttt atttggtaac cttgagaagt gcacattttg caccgatcga gtttcgtttc 3780 ttggttatgt tgtgactcca cagggaattg aggttgatca agccaaggta gaagcgatac 3840 atggatggcc tatgccaaag actatcacac aggtgcggag tttcctagga cttgctggct 3900 tctatcgccg ttttgtgaag gactttagca ccattgctgc acctttgaat gagcttacga 3960 agaagggagt gcattttagt tggggcaaag tacaagagca cgctttcaac gtgctgaaag 4020 ataagttgac acatgcacct ctcctccaac ttcctgattt taataagact tttgagcttg 4080 aatgtgatgc tagtggaatt ggattgggtg gtgttttgtt acaagaaggc aaacctgttg 4140 catattttag tgaaaaattg agtgggtctg ttctaaatta ttctacttat gataaggaat 4200 tatatgctct tgtgcgaaca ttagaaacat ggcagcatta tttgtggccc aaagagtttg 4260 ttattcattc tgatcatgaa tctttgaaac atattcgtag tcaaggaaaa ctgaaccgta 4320 gacatgctaa gtgggttgaa tttatcgaat cgtttcctta tgttattaag cacaagaaag 4380 gaaaagagaa tatcattgct gacgctttgt ctaggagata tactttgctg aatcaacttg 4440 actacaaaat ctttggatta gagacgatta aagaccaata tgttcatgat gctgatttta 4500 aagatgtgtt gctgcattgt aaagatggga aaggatggaa caaatatatc gttagtgatg 4560 ggtttgtgtt tagagctaac aagctatgca ttccagctag ctccgttcgt ttgttgttgt 4620 tacaggaagc acatggaggt ggcttaatgg gacattttgg agcaaagaaa acggaggaca 4680 tacttgctgg tcatttcttt tggcccaaga tgagaagaga tgtggtgaga ttggttgctc 4740 gttgcacgac atgccaaaag gcgaagtcac ggttaaatcc acacggtttg tatttgcctc 4800 tacccgttcc tagtgctcct tgggaagata tttctatgga ttttgtgctg ggattgccta 4860 ggactaggaa gggacgtgat agtgtgtttg tggttgttga tagattttct aagatggcac 4920 atttcatacc atgtcataaa actgacgatg ctactcatat tgctgatttg ttctttcgtg 4980 aaattgttcg cttgcatggt gtgcccaaca caatcgtttc tgatcgtgat gctaaatttc 5040 ttagtcattt ttggaggact ttgtgggcaa aattggggac taagctttta ttttctacta 5100 catgtcatcc tcaaactgat ggtcaaactg aagttgtgaa tagaactttg tctactatgt 5160 taagggcagt tctaaagaag aatattaaga tgtgggagga ctgtttgcct catattgaat 5220 ttgcttataa tcgatcattg cattctacta caaagatgtg cccatttcag attgtatatg 5280 gtttgttacc tcgtgctcct attgatttaa tgcctttgcc atcttctgaa aaactaaatt 5340 ttgatgctac taggcgtgct gaattgatgt taaaactgca cgaaactact aaagaaaaca 5400 tagagcgtat gaatgctaga tataagtttg ctagtgataa aggtagaaag gaaataaatt 5460 ttgaacctgg agatttagtt tggttgcatt tgagaaagga aaggtttcct gaattacgaa 5520 aatctaaatt gttgcctcga gccgatggac cgtttaaagt gctagagaaa attaacgaca 5580 atgcatatag gctagatctg cctgcagact ttggggttag ccccacattt aacattgcag 5640 atttaaagcc ctacttggga gaggaagttg agcttgagtc gaggacgact caaatgcaag 5700 aaggggagaa 5710 // ID EN1 repbase; DNA; GRAS; 8287 BP. XX AC M25427; XX DT 28-AUG-1998 (Rel. 3.07, Created) DT 28-AUG-1998 (Rel. 3.07, Last updated, Version 1) XX DE Autonomous DNA transposon En-1. XX KW DNA transposon; Transposable Element; DNA transposon En-1; EN1. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-8287 RA Pereira A., Cuypers H., Gierl A., Schwarz-Sommer S.Z. RA and Saedler H.; RT "Molecular analysis of the En/Spm transposable element system of RT Zea mays."; RL EMBO J 5(5), 835-841 (1986). XX DR GenBank; M25427; Positions 1 8287. XX SQ Sequence 8287 BP; 2291 A; 1665 C; 2029 G; 2302 T; 0 other; cactacaaga aaacgtcaaa ggagtgtcag ttaattaaag agtgtcgggg ccgacactct 60 taatcgaagt aaaagtgtgg gttttgctgc accgacactc ttaatttaag agtgtcgggg 120 tcccgatgaa accgacgctt ttaatttaag agtgtgggtt tttccacacc gacactctta 180 tgaatgttac cctaaattcc ccaatcctat tctacagccg tcgtgcttct tctctccttt 240 ctccctgccc gccgtccagt atacagtcga ccgccaccgt ctctccagtc tagccagcgg 300 cgtgcggcct cgccgagcca gcgtgggacg ggcggccgag ccaccagtgg cgggcgggct 360 cgccaagcag cgccgggcgg gcggcctcgc caagcagagc gcgcacctcc aagtagcgcc 420 gggcggccga gccgagccag gcggcgggcg gcctcgcagc caagccagac gccgggcggc 480 aggcggcctc gggcgggcgg cgtcgggcgg gcggcctcgc cctgccagcg ggcgacctcg 540 cagccgaggc agacgccggg cgggcagcct cacttagcgt aagcaaaatg tttctgccca 600 acctcaggtc catgaattgt actctcttcc tgtgatgaaa tgcaagcacc tgattacgag 660 atgacaacac tgtccagcca agacatgttt cattgaaaat gatggttagt acagggtttc 720 tgactttctg ttgtgcttgt ttcattgaaa ataatggtaa aaggtgcttg cattctgtgc 780 aaaatcatgt tcctgttgcc cctgttccag ttctagaact caagaagtca aaacgctatg 840 tggtattaat tgccgactta atgtttttag tggcattgcc actgatctag cattatgtca 900 agcttaagaa ctctgttctc agcctgagaa aagccgttgc tactgctgat ttgagagagg 960 ggggggggga gggggcaaaa actacagcaa aatggtgggt gtttttttcc tgcagccaaa 1020 cacattttcg cgtacatctt gacccggtcc agtcatgaga ctaggcatat atcttgatat 1080 gagcaaagta gtcagatatt tatattgttt ataccaaaaa aacaatgatt ttatgtttta 1140 gaatagaaaa catatcacgt gtagtacttg ttaacgtttt gtcctgttgt gttcaacgaa 1200 tcctgcatac ccaaaagcat tattgttcaa gtttcaagaa aacaaaatat gggaactagg 1260 ctgcataccc aaaagcatta ttgtttggtt gctttgcata aaaacttcct gcatgagctc 1320 aaaaattatt aaataaataa ataatgtatc aatagacact aattatatgt caaaattatt 1380 taatagacac taattatatg tttttttagc tttgaatatg agtgacgatc gaagaagggc 1440 gatgtacgat ggattcgaca gtgtcactca tggtcactct gatgcatggt tgagagttgc 1500 agatgaattc gtggcactcg catttgttgg tgatgctcgt ttagcgaggt gcccgtgtat 1560 aaaatgtcgg aacttggttc ggttgaaaaa agtggagctc tcgtatcata ttttcaaaca 1620 tggctttatg ccaaactatc tggtatggca tgagcatgga gaggtggacc atactattga 1680 atcggatggg gaccaggata tagaccgaat ggaagagatg ttggatgata ttaggaatga 1740 gtacccagat ctacagaata atcaagcttt tccagaggat gtgagagagt tctacaagct 1800 tcttgaagcc tcagaggcta aagtgcatga aggaaccaat gtgagcgtac tgcaggtggt 1860 aacacgtctc atggcgatga agtcaaagta caccttctcc aacaaatgtt acaacgatat 1920 tgtgaaactg attattgata tcagcccacc gaatcataac atgccgaaag acttgtacca 1980 ttgcaagaag ctcgtagctg gtcttggcat gaactaccaa aagattgatg cttgcgagga 2040 caattgcatg ttgttctgga aggagcatga aaataccaca cattgcatcc actgcagtaa 2100 gtcaagatat gcagtggtgc tagatgagga tggaaacgag gttacgacaa aggtgccgat 2160 caagcaactc cggtacatgc ctatcactcc acggcttaag cgtctctttc taaatcaaga 2220 gacagcaaag caaatgaggt ggcataaaga aggggatcgt cagggccaag atccggatgt 2280 catggtgcat ccctcagatg gcgaggcctg gcaggctctc gaccgttttg atccagaatt 2340 tgcaagagac cctaggagtg ttcgtcttgg tttgtcgacg gatggattca ctccttactc 2400 caataattcc acttcttact catgttggcc agtttttatg atgccctaca atctccctcc 2460 taacaaatgc atgaaagaag aggtcatgtt tcttgccctt attgttccag gtccgaagga 2520 tcctgtaaca aaaatcaatg tatttatgga accgttgatc gaagaactaa aaatgttgtg 2580 gcagggggtt gaggcatatg atagtcatct gaaatgttgt tttactctac gcgcagcata 2640 tctatggtca attcatgatc tgctagcata tggcattttt tctggttggt gtgtccacgg 2700 catactgcgt tgtccgatat gtatgggtga ctcacaagca tataggttag aacatggtaa 2760 gaaggaaaca ttttttgatg ttcaccgacg cctccttccc tataatcatc cttttagaaa 2820 ggatacaaag tcatttcgaa aaggcaagag ggttagagat gggccaccga agcgacaaac 2880 tggtgaaaat atcatgagac aacatcgtga cctaaaaccg ggtgtaggag gtcgatttca 2940 agggtatggt aaagaacaca attggacgca catctcgttt atctgggagc taccttatac 3000 gaaggcattg ctgttaccac ataatataga tttgatgcac caagaacgta atgttgcgga 3060 aagcatcata agcatgtgct tcgacttcac cggtcaaacc aaagataaca tgaatgcaag 3120 aagagactta gctgaacttt gtgatcgtcc gcaccttgag cttagaaaaa atccaagtgg 3180 atctgagagt cggccacaag ctccttattg tctgaaacgg caagagcgag aagagatatt 3240 tcaatggttg aaaaagctga ggttcccaga tcgctatgcg gctaatataa aacgggcagt 3300 taacctcgac actggtaaac tcgttgggtt gaagagtcat gactatcaca ttttgattga 3360 aagactagtg ccggtaatgt ttcgtggata cttcagtccc gatgtgtgga agatatttgc 3420 agaactcagt tatttttata agcagatatg tgctaaggaa atctcaaaga aattgatgtt 3480 gaggtttgag aaggaaatcg ttgtccttgt atgtaagatg gaaaaagtat tcccacctgg 3540 attttttaat tgtatgcaac atttgcttgt gcatctacct tgggaagcgt tggtaggagg 3600 acctgcacag ttcaggtgga tgtatagtca agaaagagaa ttgaaaaaac tcagaggaat 3660 ggtgcggaat aaggcaaggg ttgaggggtg tattgcagag gcgttcgcag ccagagagat 3720 cacattattc tcaagcaagt atttttcaga cacaaacaac gtgaatgcgc aaacgacacg 3780 gtaccatgtt gccgagcaag ctccaatcac tgatctaagt gcttttaagt gggacggtaa 3840 aggtgtcgga gcttacacat cacatcttgt gggaacgata gagcgtaaca agaccctgct 3900 ttttttgtat gtcaatatgc cagaacttca tccttatttc caaatctttg atagcatata 3960 taaacccaac aaacaactta ctcaaaagca gttggatgac ctacgtctga aagggttaca 4020 cggtggcccg tccttcgtgc agtggttcca cgagcatgta atttcctcct tgcccatctt 4080 tttttcgaac ttaagttcag atgttacata gtatttattt ttattcgttc ctcatttttg 4140 tagtgtaaga aacctgaagc cagtgtctcc aaagacttgc tacaaatatc acatggtcaa 4200 ttgaccgcaa gaaaatttga tcgctatgat attaatggat accgttttcg aacagcaaaa 4260 ctagaagcga gtcgtccact tgcagctaca acaaacagcg gagttgtagc aagttcgtat 4320 agcgacgatg gacaattgga ggactattat ggtattgttc aagacataac cgagtataca 4380 tttggaggtc acaaaccttt gagacttgtg acgtttgatt gtatatggtt tgatccacaa 4440 gttggcacac gagttgatga attcgggatg gtggaggtaa agcacgcatc aaggtataaa 4500 ggcaatgagt acaacaatat catcctggca catcaagcgc atcaggtgta ctatttgagt 4560 tatcctcata aaagttttaa aacctggtgg gttgcatata aagttaatcc agaggttcac 4620 ccttaccgat atcaaaacta caatttaagc accaatgatg atgatgaaga tgatgttgtc 4680 ttccaagaag tcggtgatca agcagacgat agcgacaatg atagtattgt atccgaaggg 4740 gcaggactaa atgagttagc ttctcttacc gtagagttaa tggaggaacc aatttcatca 4800 aattcaaaac gtcaaaggtt ggaagaaaca gttcttgaaa cacaacaatg ggttgaacaa 4860 cttaatacac gtgtcgccga agaggactct gatgccgacg atttttgata cataattcgt 4920 agatgtaatg gcacactctt gtttttgttt atttaatatg cattactttg tgaaaaattt 4980 atacatactt actattttgt gaattattgc agatgttcag gatggattcg tctggtagga 5040 gatccagatc acgaaggtcg aggggttcca gtggtgctcc taacatgttt gaggtacttg 5100 tttttttctt agtttagtta ctggggccag ctagcaatct aaaattgttt acatttcagg 5160 gcaccacaac aagcagaagc aggcaagagc agttgcttgc ctccctagag cagatgcggg 5220 gtagcagcgg accctccaat acagaaggga ctacttcgcg tgcagctgat ttagtggcac 5280 ctactatggc acctactgcg gaggcagctg tggacgcgga ggcagctgtg gacgcggagg 5340 ctgaggaagc tgccgcagaa ctggacgatg gagaggagac ttcgggagca gacgcttcta 5400 cagaggaggc tgccacacag gctccgccac ggcgtgccat caggtattct tattgttgag 5460 ttgaagtttt attgtcaagt tgaagtttta agtaaatgat tttctttgtt aaataacaaa 5520 ctttcatttg taggtatcgt cggtccctca cattgaagcc ttctaaaccc ttcgatcaac 5580 ggagggttat tgaaccgaaa ggcaccaggg cgtggaagga ggttagttgg gacggaacag 5640 ggcatcgcac accaatcctc acagagttgg ggatttgttt gcgattcgcc tacccggcga 5700 tggtgacaga gggcggtcaa gagatagctg ctcattactg ggctcattgg gatctcaagc 5760 cgtacgggaa cgacgggaca cacacaagca aagtgtggga tttgttttgg gtaagtccct 5820 tgtgatattc aaattgaatt cagattttgc atttgtaagt ctctggtgat cttcaaattt 5880 gcagggccaa tttcgcgtgt gcgaccccta taccttggat gattcatatg tgcgtgaggt 5940 attcaatggc tcagcagata gagctgtaaa gggtatgatg tataaagcac gattgagggc 6000 cgtcacggtg taccaaaagc gtcaggggaa ctattgtgac gcgaatatgg caaaggaaat 6060 tcacctgacg gctcagcagt acaaagagag tgaggtggat tggttgagcc accattcgga 6120 tgcttgggcg tggatgtgtg agtattgggc ttctgaggag ttcttggcca tatctaatag 6180 aaatcgtatg aatcggttga gcaagccagg ggtccacttc ttcggggcag atggacacgt 6240 tggcaaggct gcacgtatgg tatgtgtcaa attgcctggt caattgttaa ttgcatagac 6300 ttgtctagac tttttaatca tgtgttgcag gcggctcgaa atggagtgga gcctactttg 6360 cttcaagtct tcgtcgaggg acacaagggt cccgatccga atcatccgga aatactgaat 6420 gacagtaatg cgacagagaa actggtaagt atgaaaatcg actctaagat gaacatgata 6480 tgcctttgtt gtgacttgga tgattttttc ataggctcgc tacattgaca acgtgagaga 6540 aaaaaatggt ccagacacgg attggctcac tggtgagttc gatacggagg cggcttataa 6600 ggctggtgga ggcgtaccac atgggaggta tatgcgcttg tcacattgtt actgtttagt 6660 catgtcttgt catttactac atatatatat atatatatat gatactctta caggttagca 6720 attggtgacg gtgttgtccc ccgtcggagt tacactagac ggtccaattt ctcagctggg 6780 tcgaatcgac cccgacgacc atctgcacgt gaaggagagc tgcttgagaa gatgactcag 6840 atggaggaga gtatggcgca atataagcaa caagtgcagc aacagatgca acaaatgcaa 6900 aattggatgc tacatcaggt atcatttttt tgttatttcg ttgtttctca agtccgatta 6960 actgaaaaac tgatgaataa tctatttgca gatgtatgga ggtgccggaa ctcagttcgg 7020 catgccgcct tttcaacaac cccctatcat cacacatccg gtgtctggac aatcatcgga 7080 ccgctccact gcagcggcag atggatcaca ggtacaatcc tctactaaac atcatttgtc 7140 tgataatcat tggttgcttg ctctctgtct ttctacatgt ttgcttgtac atgatctatt 7200 ttaaactttt gtcattcgca tgatctatag ttacttttat tgttgatcac cgtaacttct 7260 taatcataaa caagagtgtg tcttctgttt cagggttctg caacttctgt ccaagaccaa 7320 ttgatgccat tgggtgtgat aggagggcaa atgatgccgt gggcacctcg ccagccaggc 7380 atttggccac cgatgcaaac acagatgcca ccgccgatgc cgtggggatt tcctcctcgt 7440 gggcagtcac aatcaccagg attgccctca cactcaccag gatcagtacg ttaagttgat 7500 atcctttgca tctctatttg cttcgttgtt taagcagtta ctagaaaaca tgcatgtata 7560 tgttgcagtc tatgtatatg tttaattagt tactcggtaa actaacaaat gtttgtttct 7620 tttaaagggt tcaggctcac atcatgctag tccgcctccg gatcagagca cgtttatgga 7680 cttattgatg aacacaagtg gcggcggctc caatgaccca ccaacagaat gaattaatat 7740 ggaggcttgt gtggaactta ctatgattgc gttttgtatg gactttaact tgttttagat 7800 ggatttgaac ttctttcgta tggacttgaa cttgtatgaa tattgaatat ggtgcttgtg 7860 ttatgttatg ttgaatatgg tgcttgtgtt gtgatatatt gaatgttgtg cttatattgt 7920 gctgttatgg aggcttccca tccggggagg gagaaaaata aaattggata ttaaaaaaaa 7980 ttattcacta agagtgtcgg cccccacact cttatatgcg cccaggtagc ttactgatgt 8040 gcgcgcagta agagtgacgg ccacggtact ggccgacact tttaacataa gagtgtcggt 8100 tgcttgttga accgacactt ttaacataag agcgtcggtc cccacacttc tatacgaata 8160 agagcgtcca ttttagagtg acggctaaga gtgtcggtca accgacactc ttatacttag 8220 agtgtcggct tatttcagta agagtgtggg gttttggccg acactcctta ccttttttct 8280 tgtagtg 8287 // ID STONOR_I repbase; DNA; GRAS; 3422 BP. XX AC AF082134; XX DT 15-JUN-2000 (Rel. 5.05, Created) DT 15-JUN-2000 (Rel. 5.05, Last updated, Version 1) XX DE STONOR_I is an internal portion of STONOR. XX KW Copia; LTR Retrotransposon; Transposable Element; KW COPIA superfamily; internal portion; STONOR_I; STONOR_LTR. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-3422 RA Marillonnet S. and Wessler R.S.; RT "Extreme structural heterogeneity among the members of a maize RT retrotransposon family."; RL Genetics 150(3), 1245-1256 (1998). XX RN [2] RP 1-3422 RA Marillonnet S. and Wessler R.S.; RT "STONOR_I."; RL Direct Submission to Genbank (31-JUL-1998)Botany Department, RL University of Georgia, Plant Sciences Bldg., Athens, GA 30602, RL USA. XX DR GenBank; AF082134; Positions 561 3982. XX SQ Sequence 3422 BP; 1096 A; 632 C; 818 G; 876 T; 0 other; atggtatcag agccaggttg aagcagcagt cgaggccatt ggagatatac atcttaaatt 60 agttaatggt tttgtactgt tgttgagaga cgtactttat gtaccttcct tgcgaaggaa 120 ccttatttcg gtttccagat tagatgatca gcacattcat tgccattttg gtgatagaca 180 atgtgtcatt cagtttgata ataaagatgt tggtctcgcc atccgacgag atatgcttta 240 tttactttcg caaagtgatg ttgttaatgt attagatata ccagaaaatg atccagccaa 300 cagtggcagg aaaagaaaac gaagtgatgg agaaacctcg tcgaaattat ggcactatcg 360 tttgggccat atttcgaggg ggagaataga aagtcttgtt aaggaacaga ttctccatcc 420 cctagatttc acagacttag agcaatgcag agattgcatt aagggtaaat tcgcgaagca 480 gattaagaaa gatgctaagc atagtacgag agtgttagaa attattcata cagatatctg 540 tggtcctttt ccagttagga cagtagatgg gtttaactcg ttcataacct tcacagatga 600 ctactctcgc tacggttata tttatccaat taaggaaaga tcagaagctt tagacaagtt 660 taaacagttc aaggctgaag tagagaatca acacgatttg aagataaaga ttgttcgatc 720 agatcgtggg ggggagtact atgggcgtca taccgagtat ggccaggtcc caggaccttt 780 cgcgaggttc ctaagagaaa acggtattgt tgctcagtat tcaacacctg gcgaaccaca 840 acagaatggg gttgccgaaa ggcgtaacag aacactaatg gatatggtaa ggagtatgct 900 aagttactct aacctgccat tgggtctatg gatggaggct ttaaaaaccg ctatgcatat 960 actcaacaga gttcctagta aatcagtggc tagaactcca tatgagttgt ggactggcag 1020 aaaacccacg ctcaactact tccatatatg gggttgtcca gcagaagcta gaatatttaa 1080 tcctggacag ggaaagctag atgagagaac cactagctgc cattttattg gctaccctga 1140 cagatcaaag ggatacagat tctactgccc tgacagacaa accaagttca tagaaaccag 1200 acatgccatt ttcttagagg atgacatgat caaggggagt aaggtactca gagaggttga 1260 ccttcaggaa aagaggatat atgtcccgtt tccgatggtt gaagaaccac acttctcgat 1320 acccactgtg gttacaccaa cagtcacacc gactgtgggt gaaacacctg ctgcaaatgt 1380 ggcatcatct agtgcaacta ctacagagca agtagcttca ccttctgcgc atattggccc 1440 tgagccagtt gcacaggaca gttcagaaga tgatgatagt gttgcgccaa gtgatgcacc 1500 attgcaggag ccccaggtag aatctgaacc agaaccaagt ctcaggagat cacagagact 1560 cagaaaatct gcgattcctg atgactatga agtctatgca gcagaaaaca tagaatgtga 1620 tgagattcat atgagtgagg acattgatac agaaggtgat cccactacat atgaagctgc 1680 tatgagaagt gcaaattcat ccaaatggtt atctgccatg gaagatgaat tagaatctat 1740 gagaatgaac aaagtttggg acttagaagt cattccccat ggagccaaaa cagtaggctg 1800 taaatgggtc tacaagacaa agcgtgactc cagagggaac atagaaagat acaaggctag 1860 acttgtggcc aaagggttca cacagagaga aggcattgac taccatgaaa ccttctcacc 1920 tgtctcaaca aaagattcat tcaggatcat aatggcacta gttgctcatt ttgatctaga 1980 gctccatcag atggatgtaa agacagcatt cctaaatgga gagttagaag aaaacgtgtt 2040 catggcacaa ccaaagggtt ttgttgtgag cggtaaagaa cacatgggat gtcacttgag 2100 gaggtccatt tatggattaa aacaggcctc cagacagtgg tacatcaagt ttgatcagac 2160 tataagaaag tttggtttcg aggaaaacaa ggaagacaat tgcatttatg caaaatttag 2220 aaaaggaaag tatatcttcc ttgttctgta tgtcgatgac atactcttag ctagtagtga 2280 taaggatcta ctagcggaaa caaaagggtt tctttcctcg aattttgata tgaaagacat 2340 gggagaagcc tcttatgttc ttggaataga aattcgcaga gacagacaaa agagagtact 2400 aggactctca cagaagtcat atatagaaaa tgtactaaag aggtataata tgcacaagtg 2460 taatgcctcg cctggtccaa tagtcaaggg tgataagttt ggggaatatc agtgtcccaa 2520 gaatcagtat gagaaaaaca agatgaagtc agtaccatat gcttcagcta tcggaagcat 2580 tatgtatgct caagtatgta ctcgccctga cttagctttt accaccggga tgcttggacg 2640 ctatcagaag aatccaggca tagaacactg gaaagcagtc aagaaggctc taaggtacct 2700 tcaaggtact aaaggtctca tgcttacgta cagaagatct aattccctac aaatagttgg 2760 ctatgcagat gccgactggg gagggtgtag agatacactg aagtccactt cagggtatgt 2820 ctttatgctc tctgggggag ctatttcttg gaagagctgc aaacagacag cgagagcatc 2880 gtcgacaatg cacgctgagt ttgtagctac gtatgaggca actggacagg cgatatggat 2940 aaagaaattc gtacccggat taagagtggt tgatagcata gagcgaccac tgagaattta 3000 ctgcgataat gagccagcgg tatttttctc ccataacaat aagtcaagtg gctctgccaa 3060 gtatattgac attaagtgtt atattgttaa ggagaagatt ctggatcaca ccattcaagt 3120 tgagcatata agaacccatc agatgcttgc ggatccgctc acaaaaggtc ttccacccag 3180 cgtgtttagt aagcacgcag ccggcatggg attaagggag tacctatgat ctagaatcac 3240 aggggctaca gattgcaacc tagtaaaatc tttcgttctg aagcagggga gcatgttgta 3300 gtcaatgagt gcagtgatac ttaatagatc attgtcacgc attggtctct atgtgtaaac 3360 ttgttaaagg acggaattaa taaaagtttg agtgtgaggt atgtagagaa caaaggggag 3420 at 3422 // ID TREP38 repbase; DNA; GRAS; 117 BP. XX AC X16095; XX DT 16-OCT-2002 (Rel. 7.09, Created) DT 16-OCT-2002 (Rel. 7.09, Last updated, Version 1) XX DE Hordeum vulgare repeated DNA sequence, TREP38. XX KW Satellite; Simple Repeat; 1 unit; Repetitive sequence; TREP38; KW Tandem repeat; type_6. XX OS Hordeum vulgare OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Hordeum. XX RN [1] RA Belostotsky A.D., Milshina V.N. and Ananiev V.E.; RT "Characterization of relic DNA from barley genome."; RL Theor. Appl. Genet. 0:0-00-0 (1989)In press. XX RN [2] RG PlantSat; RT "Direct submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; X16095; Positions 1 117. XX SQ Sequence 117 BP; 19 A; 31 C; 32 G; 35 T; 0 other; cgaaactcgc atttttggcc tattctggct agttctgcat gctattgctc actgattttg 60 gatcccgctg cgatccgaac gttttgggga accccggggg ccggttacgg gaactct 117 // ID FATIMA1_TM_I repbase; DNA; GRAS; 3638 BP. XX AC AF326781; XX DT 16-OCT-2002 (Rel. 7.09, Created) DT 10-OCT-2005 (Rel. 9.07, Last updated, Version 3) XX DE Triticum monococcum gypsy-type retrotransposon, FATIMA1_TM_I, DE internal region. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW GYPSY superfamily; internal region; TREP252; FATIMA1_TM_I. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RA Wicker T., Stein N., Albar L., Feuillet C., Schlagenhauf E. RA and Keller B.; RT "Analysis of a contiguous 211 kb sequence in diploid wheat RT (Triticum monococcum L.) reveals multiple mechanisms of genome RT evolution."; RL Plant J 26(3), 307-316 (2001). XX RN [2] RA Dubcovsky J.; RT "Direct submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AF326781; Positions 141955 145592. XX CC The sequence was reversed and complemented relative to TREP (JJ). XX FH Key Location/Qualifiers FT CDS 2954..834 FT /product="FATIMA1_TM_I_1p" FT /translation="MLDFDSEDIDGMDDDAGDEQEPAHVGRWKATSSYDIY FT MVDTPKDGDGDGIAGDDTSKKQPKRRRQRRRSKSRQRKNGDSGTGDNTTPD FT STEEHPLQQESAQEDREASPHERVADKEVEDDNHMPPSEDEASLDDDEFVV FT PEHLAEQERFKRRLMATASSLKKKQQQLRADQDLLADRWTEVLAAEEYELE FT RPSKSYPKHRLLPRLEEEAPTSPAHDMADRPPRGCDREASRPSTQAMPRHR FT VKHTKARENAPDLRDILEDKARQTRSIYGSRRHPTARDGDRHSGCNESSRA FT ELNRQSSFKLRRDIAQYRGAAHPLCFTDEVMDHKIPDGFKPINIKSYDGTT FT DPAVWIEDYLLHIHMARGDDLHAIKYLPLKLKGPARDWLNSLPVDSIGSWE FT DLEAAFLDNFQGTYVRPPDADDLSHIIQQPEESARQFWTRFLTKKNQIVDC FT PDAKALAAFKHNIRDEWLARHLGQEKPKSIATLTTLMTRFCAGEDSWLARS FT NNLTKNPGNSNTKDKSDRSRRNKQKPRINSDSNEDTTVNARFRGYKPSQRK FT RPFKRNTQGPSSLDRILDRLCQIHGNPEKPANHTNRDCQVFKQAGKLRVEN FT KDKGLHSDDEEEPRPPNNNGQKGFPPQVRTVNMIYATHIPKREQKRALRDV FT YAMEPVAPKFNPWSSCPITFDRRDHPTSIRHGGFAALVLDPIIDGFHLTRV FT LMDSGTA" XX SQ Sequence 3638 BP; 651 A; 913 C; 1075 G; 999 T; 0 other; ttacatgtct tggccagggg caggccgcgg aattgtatta aaaaataggt atactgctcg 60 caatagagac cacctgggag ttccataatg cggcgtggct tgtctgcttt cctgggtctt 120 gcatcgtttg tgtggcagtt gaattgccga acgggtcgtc cgaagtatgg agtcctgaga 180 gtaaaagaaa aaaaaagaat ccggcagccc ctggtgcggt ttaagccgta tttcgggcgt 240 gccgtgatag tgccccttcc cctgtgccca tggtatttca agagcgtagt tatgtatgtg 300 aagcactggt ttcgctatat cgcgagggct agggttgggg ccgcattgct acgctagctc 360 agaacatgcc aggcggtctt gttgtggggt actccgggcg cgcttgatag tgtccggctt 420 tttgaaggcc gaactggaga actgcctaga gaggctgctt tgtacttctg ctgcgagcgc 480 tgccgtgtgc tcctccattc ggagggagca ttcagtgttc ccattgaccg tgattactcc 540 tctagggcct ggcatcttga tcttgaggta tgcatagtgc ggtaccgcgt tgaattttgc 600 gaatgcggtt cgcccgagca gtgcgtgata gccactacgg aacgggacta tgtcgaagat 660 taactcctcg cttcggaagt tatccggaga tccgaagacc acttccaatg taactgagcc 720 tgtatagttg gcttctacac ctggtatgac acctttaaag gtcattttgg tgggcttgat 780 cctcgaggga tctatgccta ttttttgcac tgtatcctag taaagcaggt tcaggctgtg 840 ccgctgtcca tgaggactct tgtgagatga aatccgtcaa tgattgggtc gagaaccaat 900 gcggcgaagc caccgtgacg gatgctagtg gggtggtccc ttcgatcaaa ggtgatcggg 960 caggaggacc atgggttgaa ctttggggcg actggctcca tcgcatatac gtcccgtaac 1020 gcacgcttct gctccctctt ggggatgtgg gttgcgtata tcatgttcac cgtccgcact 1080 tgcgggggaa atcccttttg tccattgttg ttcggcggcc tgggctcctc ctcgtcgtcg 1140 ctatgcagcc ccttgtcttt gttttcgact cttaacttgc ctgcctgctt gaacacctga 1200 caatccctgt tggtgtgatt ggctggcttt tcggggttgc catgtatctg gcacaagcgg 1260 tcgagtattc ggtccaaact ggacgggccc tgagtatttc ttttgaatgg ccttttccgt 1320 tgactgggtt tgtagcctcg gaatctggca ttaactgtcg tatcctcatt gctgtcgctg 1380 ttaatgcggg gcttttgttt gttccgacgc gacctgtcac ttttgtcctt ggtattcgaa 1440 ttaccagggt tcttggttaa gttgttgctg cgagctagcc agctgtcttc tcccgcgcaa 1500 aagcgggtca tgagtgtcgt gagggttgcg atagatttcg gcttttcctg tcccaggtgc 1560 cgggcaagcc actcatcacg gatattatgc ttgaaggccg ctaaggcctt tgcgtccgga 1620 cagtcgacta tctggttttt ctttgttagg aaccgtgtcc agaattgcct ggccgattcc 1680 tctggctgct gaattatgtg gcttaggtca tcggcgtccg gtggtcgcac ataagtgccc 1740 tggaagttgt caaggaatgc ggcttccagg tcctcccaag aaccgattga gtctactggc 1800 aagctgttaa gccaatcccg ggccggtccc ttaagtttga gtgggaggta tttgatggcg 1860 tgtagatcat caccgcgggc catgtggata tgaaggagat aatcctcgat ccataccgca 1920 ggatctgttg tgccatcata tgatttgatg tttatgggtt tgaaaccgtc agggatttta 1980 tgatccatta cttcatctgt gaagcatagt gggtgtgcgg cgcctctgta ttgggctata 2040 tcacgacgca gcttgaagga gctttgtctg ttgagttcgg cccggctgga ttcattgcat 2100 ccggagtgac ggtcaccgtc acgtgccgtg gggtgcctgc gcgatccata gatcgatctt 2160 gtttgccttg ccttgtcctc cagtatgtcg cgcaggtcgg gcgcattttc ccgtgcctta 2220 gtatgcttga cgcggtgccg gggcatggct tgagtggagg gccgagaggc ctctctgtcg 2280 cagccacgag gtggccgatc ggccatgtca tgcgctggtg atgtaggtgc ttcctcctct 2340 agtcggggta gcagcctgtg ctttgggtaa ctcttggagg ggcgttcgag ttcatactct 2400 tcggccgcaa ggacttcagt ccatctatca gctagcaaat cctgatcagc tctaagctgt 2460 tgctgctttt tcttgaggct gcttgccgtg gccataagcc tgcgtttaaa acgctcttgt 2520 tcggcgagat gctctggcac gacgaactcg tcgtcgtcga ggcttgcctc gtcttcggag 2580 ggaggcatat gattatcgtc ctcaacctct ttgtccgcca ccctctcgtg agggctggct 2640 tctctgtcct cctgtgctga ctcttgctgg agggggtgtt cttcggtgct atccggagta 2700 gtattatctc ccgtgccgga atcaccgttt ttcctttggc gggatttaga gcggcgccgc 2760 tgacgccggc gcttgggctg tttcttagag gtatcgtccc ccgctattcc atcgccgtct 2820 ccatcctttg gagtgtccac catatatatg tcatatgacg aggtggcctt ccagcgccct 2880 acatgtgctg gttcttgttc gtctcctgca tcgtcgtcca taccgtcgat gtcttcggag 2940 tcgaagtcaa gcatgtcggt taagtcgtcg acagtggcta cgaagtgggt ggtgggtggg 3000 ttttgaattt cttcatcgtc cgtatcccaa ccttgctgac cgtagtccgg ctagggctct 3060 cctgataaag agagagactt tagagaattc aggatgtcgc cgaagggcga gtgctgaaag 3120 atgtccacgg cggtgaactc cattatcggc gcccaatcgg attcgatcgg caggggcgcg 3180 gggggctcgg agttcggaga ggaatccggc tcctcggagt cacgggccat gcggagtgcg 3240 gggttcgagt tcggctcgat cgcctctgag atcgcagccc ctgaggcaac gtccaaccgc 3300 tgatcctcga tcggcgcagt aggctccgaa tcaatggtcg gaaccggtgt gtgtgcggcc 3360 tccaaagcgc tgttcggcgg cagagctata tcatgcccat cgagacagtg cggcgcgctt 3420 ggctgtggct cgaatccgtc gaagatcaag tccccgcgga tgtcagccgt atagtttagg 3480 cttccaaacc tgacctgatg gccaggggcg tagctttcga tctgctcaag gtggccaagc 3540 gaattggccc gcagtgcgaa gccgccgaag acgaagatct gtccggggag aaaagtctca 3600 ccctggactg catcgttgtt gatgatcgaa ggagccat 3638 // ID En/Spm2_HV repbase; DNA; GRAS; 9099 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE En/Spm-like DNA transposon. XX KW DNA transposon; transposase; En/Spm superfamily; CACTA; Caspar; KW TREP787; En/Spm2_HV. XX OS Hordeum vulgare OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Hordeum. XX RN [1] RP 1-9099 RA Brunner S., Keller B. and Feuillet C.; RT "Microcolinearity studies at the Rph7 locus in rice and barley RT reveal new mechanisms of local genome expansion by insertion of RT genes and low-copy DNA."; RL Unpublished. XX RN [2] RP 1-9099 RA Wicker T.; RT "Direct Submission."; RL Direct Submission to Repbase Update (from TREP) (JAN-2003).. XX SQ Sequence 9099 BP; 2546 A; 1949 C; 2272 G; 2318 T; 14 other; cactggtaga aaaagaggct tccgtccagc cccataagtc gcgacactgt aggaaccgcg 60 actaatgatt tcttttnagt ccggttcggc agacgaaccg cgaccaaagg cctgggccag 120 ggcgctcggt ggccagctgg tgcacgtgag kggggtctct ctggtgtgca tcgcaagccg 180 cgactaaagg tgcccaaagg cctttagtcg cggtttgcca tgccanccgc gactaaatct 240 cctcccctat agataccagt tcagcacact cacttagcca tttggtgcca cttctcttca 300 caagcttcac aagggggtgt aggtttgctt ttggttcctc ttatgcacac aaggtgtttg 360 atgaaatgcc ccaagagcgt gaaacaaaca tgatatgaag tgttggagcc acacttgagg 420 ttcctcattt attttttcct ccttgatcgc ggttagcaac ttgaaccttt catgcatgtg 480 tgtcattgat aaaatatgca tgtgtgttgt tcattgttta atttctattg tttatagcta 540 gttagtttaa caaatgcatg atggttaatt atatatttta tattataata atgcagatga 600 atcggcaatg gatgtacggt aaccgactct cccgcgagtt cactacgggt ttgaaagatt 660 tcctcgtagt ggctaatgcg aacaagcaga agggttttgt tatctgtcca tgtgttgact 720 gtnagaatca gaagggttac tcttcctcaa gagaagttca cctgcacctg cttcggcacg 780 gtttcatgcc aagctataat tgttggacca agcatggaga aagaggggtt ataatggaag 840 aagatgaaga aggggatgat ttcatggatg aaagctatct tgctcatttc ggtgatactt 900 tcatggagga tgctgaaggt gaaggggaag gtgaaggtga agaagaggca cgtgatgaga 960 ccgttgatga tcttggtcgg accattgctg atgcacggag acgctgcgaa actgaaaagg 1020 agagggagaa tttggatcgc atgttagagg atcacagaaa gtcgttgtac cccggatgcg 1080 atgatggtct gaaaaagctg ggctgcacac tggatttgct gaaatggaag gcacaggcag 1140 gtgtagctga ctcggcattt gaaaacttgc tgaaaatgtt gaagaatatg tttccaaaga 1200 ataacgagtt gcccgccagt acgtacgaag caaagaaggt tgtctgccct ctaggtttag 1260 aggttctgaa gatacatgca tgcatcaacg actgcatcct ctaccgcggt gaatacgaga 1320 atttgaatga atgcccggta tgcactgcat tgcgttataa gatcagaggc gatgaccctg 1380 gtgacgatgt tgagggcgag aaacccagga agagggtttc cgccaaggtg atgtggtatg 1440 ctcctataat accacggttg aaacgtctgt tcaggaacaa agagcatgcc aagttgttgc 1500 gatggcacaa agaggaccgt aagtcggacg gggagttgag acacaccgca gatggaacgc 1560 aatggagaaa gatcgacaga gagttcaaag attttkgcas tgacgcaagg aacataagat 1620 ttggtctaag tacagatggc atgaatcctt ttggcgagca gagctccagc catagcacct 1680 ggcccgtgac tctatgcatc tacaachwtw mmwcmttggt tgtgcatgaa gcggaagttc 1740 attatgatgc cagtgctcat ccaaggtccg aagcaacccg gcaacgacat cgatgtgtac 1800 ctaaggccat tagttgatga acttttacag ctgtggggca gacctggtgt ccgtgtgtgg 1860 gatgagcaca aagaagagga atttgaccta cgagcgttgc ttttcgtaac catcaacgat 1920 tggcctgctc ttagtaacct ttcgggactg tcaaataagg gatacaatgc atgcacgcac 1980 tgcttacatg agactgatag tgtacatttg ccaaattgta agaagaacgt gtaccttggg 2040 catcgtcgat ttcttccgaa aattcatcca gtaagaaaga aaggcaagca ttacaacggc 2100 aaggcagatc accggccgaa gcctgcggaa cgcactggtg ctgaggtatt tgatatggtc 2160 aaggatttga aagtcatctt tggaaagggt cctggcggac aatcagttcc gaagggagct 2220 gacgggcacg cagccatgtg gaagaagaaa tctatattct gggagctaga atattggaaa 2280 gtcctagaag tccgctctgc aatcgacgtg atgcacgtta cgaagaatat ttgcgtgaac 2340 ctcctaagct tcttgggcgt gtatgggaag acaaatgata caaaggaagc acggcaggac 2400 cagcaacgtt tgaaagaccc tgatgaccgg catccggaat ggtttcaagg tcgtgccagc 2460 tacgctctga ccaaagaaga gaaggtcatc ttttttgaat gcctgagcag tatgaaggtc 2520 ccgtctggat tctcgtccaa tataaaggga ataataaaca tggcggagaa aaagttccaa 2580 aacctgaagt ctcacgactg ccacgtgatt atgacgcaat tgctttcgat tgctttgagg 2640 gggctcctgc cgcaaaatgt tcgagtagcc attgtgaagc tatgtgcatt cctcaatgca 2700 atctctcaga aggtaatcaa tccagaagtt ctaccacggt tacagaacga tgtgatccaa 2760 tgtcttgtca gtttcgagtt ggtgttcccg ccatccttct tcaatattat gacgcacctc 2820 ctggttcacc tagtcgaaga gattttcgtt ctcggtcctg tatttctaca caatatgttc 2880 cccttcgaga ggttcatggg agtattaaag aaatatgttc gtaaccgtgc taggccagaa 2940 ggaagcatcg ccaagggcta tggaaatgag gaggtaattg agttttgtgt tgactttgtt 3000 cctgacctta agccgattag tcttcctcga tcgcggcacg aggggagact aagtggaaaa 3060 ggcacgatcg gaagaaaatc aacgatatgt atggacggcc attctctgac tgaagcacac 3120 cacactatac tgaccaattc cagcttggtg gctccgtact ttgagaaaca caagaatatt 3180 ttacgctcgg acaacccggg gaagcttgaa tcctggatta ggaaggtcca catggagact 3240 ttcggcagtt ggttgagaaa acatttaatg aatgacaatg atgttgtaga tcagctgtac 3300 atgttggcca agacaccatc ttcgactata acgactttcc aagggtacga gataaatggg 3360 aatacatttt acacgatcgc ccaagataaa aagagcacca accaaaacag tggtgtccgc 3420 tttgatgcag caaccgagaa tgggcaagag gtcacatatt atggttacat agaggagata 3480 tgggaacttg actatggacc ctcctttaag gtccctttgt tccggtgcaa atggttcaag 3540 ctaacaggag gtggggtaaa ggtggaccag caatacggaa tgacaatggt ggatttcaac 3600 aatcttggtt accttgacga accattcgtc ctagcgaaag atgtcgctca ggttttctat 3660 gtgaaggaca tgagtagcaa accgaggaaa cggaaagata agaaaacgat cagtacatca 3720 tgcgatgatc caaagcgcca cattgttctt tcagggaaaa gaaacatcgt gggagtggag 3780 gacaagacag acatgtcaga agattataat atgtttgctg aaattccgcc cttcaaagtg 3840 aacaccgacc caagcattaa gttaaatgat gaggatgctc catggatacg gcacaatcgt 3900 aagcaagcag ggacacaagg gaagaaatga tgtgtaataa tttattgtac caaactttgt 3960 tgaatggatc atgtgaatta tattacccgt gatgtgtttg gtgtccattt tcgaatgatt 4020 cgagatacca ctgatgatac atgaaatttg gagtgattta gtcatactcc tgcctaggcg 4080 tataatatgc atactcgtag tcttcatagc cgccgtcgtc gttgtactgg tagtcgtcgc 4140 cttctaagtt gccgccgtcg tcgtcgctgc tgtcgtcgct gtcgtcgggc ggcgctcgtg 4200 gctcgaactg agggtagcgc aggcggggga tatcgccggc cgtgatgtag tccatgacgc 4260 tctgcagagt ccggccgtac caccatagcc gacggccggc ctcgtggaag ttcccaggag 4320 gcagaccgtc ctccacatac ctggcgagcg ccctctcacg ccgattgatg aagaaggcgt 4380 cccaagtatg ctggttatcg ggatgccagc ggggattcat ccgctgctcc ggcgtgaggt 4440 cgaggtagta gtggttcgtg atggccgccc ggcgcgcagt accctgaggg acgggaggga 4500 ccggcacgcc gccggcgctt aggctccagc cggtggggac gcggtacccc ggtggacaag 4560 ggtagttcga ggcgcaaagc tcctccacct gctggtaggt tagagtgggt gcggtggaag 4620 ccatgagaga gtgatgagag attgtagaga tgtgataatg ctggccaagc cgggctacat 4680 atatgtagtg agaaatggcg ggaaaaatgg gagcgggaag acaggaggcg ggaagaaaga 4740 ggcgggaaga cagggaagaa atggcgggaa gaagaggaat ccagagctgg tcatctaacc 4800 tttagtcccg gctggttggt gcattttgaa ttgaattagt tttatttttc ttaatttttt 4860 gatatattat ttgtattttt aacattttga attgaattag ttntattttt cttaattttt 4920 tgatataatt tttgtgtttt taacatattg aattgaatta gttttagggt ttctgaattt 4980 tttgatatat tatttgtatt tttaagatat tgaaaaagaa aagtattttg aaaaatacct 5040 ttagtcgcgg ttggccagac caaccgcgac taaaggtcgt tgcgcgcggg aacgaaaaaa 5100 ccctttagtc gcggttggtt ttgccaaccg cgcctaaagt ttacctttag tcgcgggtcg 5160 cctccccaac cgcgactaaa gggggcgggc tataaataca agggcctgcc gccgtcttct 5220 ccgattctcg tcttctccga ttttctgccg cgcgcgcgga aggcctgccg ccgtcgccat 5280 cgccatcgac gccgcccgcc gtcgccctcg cccaccgcgc gcgcgccgcc tcgctcgccc 5340 gccctcaacg acgccggccg gcctcggtac tgccgcctcg ctcgcccgcc ctcgccgcct 5400 cgctcgcccg cttaacgccg caaatttcta cagagtttac agagtataaa ctttgtatat 5460 acaattccaa acatatacaa tacaaaaata taactgatgg tgtatccaat gacatgcatt 5520 tcgtaagtta atggacataa tttgtgtgta aacaaggtca aagtttgtga tttttgactt 5580 ttgaaaaaaa tctatacata ctacattatg gaatggatgg agtataaatt ttcttgacat 5640 ggattgttta agttgtagga ataaatccca tatggtatag ttttttcatt gatgtttatt 5700 tttttatcgg gacaataact ccaataacat aaacttcctt aaagactttc acacaatcca 5760 tgtttgtttt aatgaatgtc ctcaacaacc atacactgca ctaccaccaa tttatatgcc 5820 gtgttctctg catgcttcag actcactgag ttttgacaca tctgagaaac cacctgttag 5880 caaaagaggg aaagcactat gcaagaacaa agaaaaagaa ataaagaaag ggaggtcatc 5940 acttcatctt gagaatagaa gacgtcggga agaaaacgct cagttgatgc gaccgctagc 6000 atcccacgaa gagaaaacat attgtcgagc cctatgattt ctcgatgcac ctgcacagtc 6060 ccgggtctca tactcgtgtg gttagtacac acggcagtga tgagaaaaaa agtatggtct 6120 aaaacgtata atcatttgaa tttacataaa aaatgactta gtttaacaaa aacggtaaaa 6180 taacttaggg taagaattag tttaacaaaa acggtaaaat aactccctct ccgtgacgcc 6240 gtcgtctgcc gccccgtctc gcgctctacc gcgacaccct ctcccacccc ttcctcgccc 6300 cctccttttg ccaccgccct ttcgccaccg ccaccgccac cgtccccctt cttcacttaa 6360 ttaatttgtt tttactacat gttttcagga ctgacataat ggcggacgat agagctgacc 6420 cgattatgga caactatgat ccggacggtg aagcacatat gttcggcatc ataaacggcg 6480 atattctata tgtgccgacc ggagaagaag aagatgatat ctcttcttat ctgaaccttg 6540 acggtgaaaa tgaagggcgc cgtcggcaag atgatgccaa acaaacgccg ataaacgacg 6600 atcttcaaat ggaagtagca accacctccg gcgccgaggt atatatacat tgagcctctg 6660 gtgatacaaa ctaactgatt tgaataaata tgtgtgtact aacgcgcgct actctctttc 6720 ttattttagc cctcggccgg atcgtcgaaa caatcgagta cgtcgtcaaa gcgtggcgca 6780 accaagacga tgaaacaagg agaaacatgc accatcgagg ttgtcgatag tgcaaccggc 6840 aggccgctgg agccccgcaa gaacgccacc aagtttgtca gccaatgcgg agccgttgtt 6900 agagacaacg tctcgatcac cgtccaggag tggaatgagc caaagaaggc acgaattgct 6960 ggtttcactt ttgtcgataa gagaacaaaa aaagattgct tcatgagaaa tggaaggcgg 7020 actgcaagaa gaaaagagag cccgagccca agccagtatt ttctgatgag caaaaaaagt 7080 gggctaagtc atttttggag cacaccgtcc caagccgcga agaatctgcc tgacgactat 7140 gcacgtgaac ttcgtagcaa ggcattcatg ttgaaggaga agaaaagagc gggcgggaga 7200 accagaagaa caaagccctg gaggaaggcc gagaaacgga attagaaagt agaaaaagcg 7260 ggaaacgagt tgcccagctc ggggaacaaa gtaaacaatc gattgccccg cttatagtga 7320 aagccgccgg tccggatgac cccgatatca tagcagctgc ggcagcacat ggattgactg 7380 taacgagtgc cagagaacaa acggccaact taggtattac tcttcgtgaa atgttaggcc 7440 ttgatgaggc gccagtgaag gaggtagtaa ttacatatgt gaagaatggg cctcgcatcg 7500 agcctgcgca ggaagaggat ctacctccac aaatgaaagg tctgctgaaa tggtacaagg 7560 gttacataaa aaataaaaac gccaaagatt atatttatgc ggaagttaga tatgagcatc 7620 acttcaaaca ttactatgta caaattcatc tgagtgaatt gttccagctt ttcaatctgc 7680 ggcgagctcg acaaatctat catcagttgc tacgttctgt aagtgattta tttatacccc 7740 atctcgttca tattgcctgc actatatata tgtcgtaact atattgttgt gtctgctatt 7800 atacatgcag aatgaagatt aaggaatgca gagtaaggaa catccatgat gttgggttca 7860 ttgacccaca catcgttaat ggatatgtgt tggagcatca ccccgccgac atggaggcag 7920 acctgtggca gtttcttaca aagcaggaac tcaaaagtga tattctattt ccttaccatt 7980 ttgggtgagt gtttctgtct tgagcacatt ctcttttgtt tactccatgc atggtatgtg 8040 gccggctaat cgatgagtta tgcatgacgt actgtgcatg tatcgtgtcc gcaggttcca 8100 ttggattctg ctagtaatta aagttgacac ctcagaatgt ctcgtccacg actctctgaa 8160 tatggatcca aagctttggg gcggcatgag aagaatgctg cagaagtaat tattttcatt 8220 catttgcgct ctatatcgat cggcctattt cgttcatttc ctaatatcaa gtaactaata 8280 actctcttgt tcatttaatt ttctttgcct cgtagggttt ggagacggtt cgtagataca 8340 aaggtcggtg aattcaaaaa agagctagaa ttcaaaaggt caaaggctaa aaatggtggg 8400 gatattcagc cagcggggac caatctatgt ggatactatg tctgtgagat gatccggaga 8460 tacacctctg agcgggttcc gagtgatacc aatgctcagc ggaataacct ccgggtgatg 8520 cttagtccag aagctcgctt ccaaccactt caagaggaac tagctggatg gttcaggagg 8580 gaagtcctcc atcgtaaagg agaacaccat tacgaggacg tagaacttta tatgcattaa 8640 attatgtatg gaaacttgtt caaaattgta tatggtcatc cgatgatatt gaatatatat 8700 tgtatattcc tcttgaattc tttttggttc taatttcaaa tttgtttgaa attgtacatt 8760 catatgcatg tatgtagtac cgtagaatat gggaaaccct ccaaaattaa aataaagccc 8820 aaaagaaata aaacaattca aattaaacag aaaacaggtt tagggggggg ggggctaaac 8880 cctgtggcgg cctttagtcg cggttggcca aaaaaaccgc gactaaaggt cctccgcccc 8940 gacggccgcc tggcgcccac gtggacgggc ctttagttgg ggttcttaag caaccgcgac 9000 taaagggggg gcctttagtc gcgcctattt ggtcgcggtt acgcaaccgc gactaatggc 9060 agttgcgaac cgcgaccaaa ggcccttttt ccatcagtg 9099 // ID TSB1 repbase; DNA; GRAS; 471 BP. XX AC . XX DT 02-MAY-2002 (Rel. 7.04, Created) DT 31-AUG-2007 (Rel. 9.07, Last updated, Version 3) XX DE Sorghum bicolor non-autonomous DNA transposon - a consensus. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW TSB1. XX OS Sorghum bicolor OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Sorghum. XX RN [1] RP 1-471 RA Chopra S., Brendel V., Zhang J., Axtell D.J. and Peterson T.; RT "Molecular characterization of a mutable pigmentation phenotype RT and isolation of the first active transposable element from RT Sorghum bicolor."; RL Proc. Natl. Acad. Sci. U.S.A 96(26), 15330-15335 (1999). XX RN [2] RP 1-471 RA Jurka J. and Drazkiewicz A.; RT "TSB1: a non-autonomous DNA transposon from Sorghum bicolor."; RL Repbase Reports 2(4), 29-29 (2002). XX RN [3] RP 1-471 RA Jurka J.; RT "Consensus."; RL Direct Submission to Repbase Update (31-AUG-2007). XX DR [2] (Consensus) XX SQ Sequence 471 BP; 125 A; 73 C; 91 G; 174 T; 8 other; ggccttgttt agttccgaaa arattttgga tttyggtact gtagcatttt cgtttttatt 60 tgryaaatat tatccaatca tggactaact aggctcaaaa gattcatctc gtgatttaca 120 gataaactgt gtaattagtt tttgttttcg tctatattta atgcttcatg catgtgccrc 180 aagattcgat gtgacgggra atcttgaaaa rttttgggaa ctaaacaagg ccttgtttag 240 ttccgaaaat tttttggatt tcggtactgt agcactttcg tttttatttg acaaatattg 300 tccaatcatg gactaactag gctcaaaaga ttcatctcgc gatttacagg caaactgtgc 360 aattagtttt tattttcgtc tatatttaat gctccatgca tgtgccgcaa gattcgatgt 420 gacggrgaat cttgaaaagt ttttggtttt tggggtgaac taaacaaggc c 471 // ID TREP43 repbase; DNA; GRAS; 296 BP. XX AC M38471; XX DT 16-OCT-2002 (Rel. 4.3, Created) DT 16-OCT-2002 (Rel. 4.3, Last updated, Version 1) XX DE Hordeum vulgare mobile element DNA fragment, TREP43. XX KW Repetitive sequence; transposon; fragment of CDS; mobile element; KW TREP43. XX OS Hordeum vulgare OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Hordeum. XX RN [1] RP 1-296 RA Chernyshev I.A., Golovkin V.M., Mil'shina V.N., Gazumyan K.A. RA and Anan'ev V.E.; RT "Molecular-genetic organization of mobile elements of the Ac-Ds RT family in cereal genomes. Identification of DNA sequences RT homologous to the Ac element of maize in barley Hordeum vulgare RT L. genome."; RL Genetika 24, 1338-1344 (1988). XX RN [2] RP 1-296 RA Wicker T.; RT "Direct Submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; M38471; Positions 1 296. XX SQ Sequence 296 BP; 67 A; 71 C; 68 G; 90 T; 0 other; gcgctgctac tgcctacact ctgggcgggt ggcccgctca gctgttggtg gtggtggtga 60 tgtgcggcca catccatgcc cacgcgcacg tgcacgtaca ttctgaatcc gactagagag 120 gctcagcttt tcttttcaac cctgttataa acagattttc gtattattct acagtcaata 180 ttgatgcttc ccaatctaca accaattagt aatgctaatg ctattgctac tgtttttcta 240 atatatacct tgagcgtatg cagagaacac ggaatttgtt ttgcgagtag aggcgc 296 // ID ALBERT_TA repbase; DNA; GRAS; 7197 BP. XX AC AF325196; XX DT 16-OCT-2002 (Rel. 7.09, Created) DT 16-OCT-2002 (Rel. 7.09, Last updated, Version 1) XX DE Triticum aestivum cacta-type non-autonomous DNA transposon, DE ALBERT_TA. XX KW DNA transposon; Transposable Element; Nonautonomous; CACTA family; KW complete element (7 bp TSD); TREP241; ALBERT_TA. XX OS Triticum aestivum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RA Feuillet C., Penger A., Gellner K., Mast A. and Keller B.; RT "Molecular evolution of receptor-like kinase genes in hexaploid RT wheat. Independent evolution of orthologs after polyploidization RT and mechanisms of local rearrangements at paralogous loci."; RL Plant Physiol 125(3), 1304-1313 (2001). XX RN [2] RA Wicker T.; RT "Direct submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AF325196; Positions 9131 16327. XX CC source 1. .7197 CC /organism="Triticum aestivum" CC repeat_unit 1. .7 CC /note="target site duplication" CC repeat_unit 8. .460 CC /note="terminal inverted repeat" CC repeat_unit 6813. .7190 CC /note="terminal inverted repeat" CC repeat_unit 7191. .7197 CC /note="target site duplication". XX SQ Sequence 7197 BP; 2093 A; 1639 C; 1589 G; 1876 T; 0 other; ggctgctcac tactagaaaa agggctatag atgggattga cactaatggc gcaccagaca 60 agcggtgcgc cattagagtt gaaactaata atggcaaacc aggcgcaggg tgcgccatta 120 gtatcaaaat tttttttttt aactagtgcg cctgtccaaa catactaatg gcgcatccag 180 acacagtgcg ccattactag ttgtaactag taatggcgca cctggtccag ggtgcgccat 240 tagtatcaaa aaaaaattta actagtgcgc ctgtccaaac atactaatgg cgcacctatc 300 ccagggtgcg ccattagtat caaatttttt tttttaacta gtgcgcctgt ccaaacatac 360 taatggcgca tccagacaca gtgcgccatt actagttgta actagtaatg gcgcacctgt 420 cccaggatgc gccattagta tcaaaaaaat attttttttt aactagtgcg cccgtccaaa 480 catactaatg gcgcatccag acacagtgcg ccattactag ttgtaactag taatggcgca 540 ccaggcccag ggtgcgccat tagtatcaaa aaaaaatttt aactagtgcg tccgtccaaa 600 catactaatg gcgcaccctg ggacattagt aagtgggcag caacaagata ttttggacag 660 cctctcctac ccacactcac tttctcccca cttcattctc tccacctcct ccttgtctcg 720 ggtgcctcct ctttttcacc tcatttccac catagattca ttcaattcat ggatggctat 780 cggtggcaag gtgatgaaga tgactacgaa gtcgtccatg ggggccgggc aagaaatgag 840 gaagggcagc aagacaacca ccgcggctcg ggcgggcgag aagacgaaga atccccagga 900 gatgatcacg acggtgatgc tgtacacagt catcatgtag aagatgcagg acatgatgat 960 gaggaagatg ccggaacaga cgacgggcat gatcatgaag atgatgatgc cggcggagca 1020 gacgacgctg gaccatcgat gggctgggtg caggaccctc atattcaaga gctgcttctc 1080 aagcagacgg ataacgcaag agctgccgcc cgagagaaag ccaagatgga tcaacttgag 1140 ttagacgcgg ttactccatt gtatgaagga tgcaggcccg aggatacccg cctgaaagta 1200 acgctcatgg ctctggagat gaaggtaaaa cacaaaatga ccgatgcatg cttcgacgag 1260 aacatgtcat tctggcacga acgtcttccc aaggggaaca agtgcccgac cagtttggag 1320 gaggcgaaga aaatcgtgtg tcctctggat ttaccgcacg tgaaatacca tgtgtgcatg 1380 aacaattgca tcatttatcg ggacgagcac gcggagtcta ccatatgtcc ggtgtgcggc 1440 gtcactcgat acaagaagag gaagaaagct cctcgaaaag tggtgtggta ctttccgatc 1500 actcctcgtc tgcagcggta tttcgcggac cctaaggtag caaagctcct gcgttggcac 1560 gcggataggg aggagaagaa gcgagaagat gacgcaaatg atccggagat agataaaaaa 1620 gacaagatgc tgagtcaccc taaggatgcg ttggcaccct agaatttggg aacgatccaa 1680 ggaacatcgt gctgggcgcg agcaccgatg gagtcaatcc gtttggcagc cagagaagca 1740 cacatagcac ctggcctgtg tttgtgtgga tgtacaacct tcccccctgg ttgtgcatga 1800 agaggaagta cattcacatg agtatgcatg ctaatcgaag gaccgaaaca accaggaaat 1860 gacatgagaa gcttctgtcg taccctttac atgaggattc ttccgcggaa gaacaactca 1920 tattcgcctt gtcacagggc gtcgagcaca acctgatgac ctatgaggcg tacgatatca 1980 acggctacac attctacacc gaggccaagg acatgaagag cgatggttat cagaactccg 2040 gggtaacgat ggaatcctac accggtaacg acaaggacag atactacgga aggatcgagg 2100 agatctggga gctgagctat gctggagaga aggtcccgat gttccgtgtc agatgggcca 2160 agagcgtcct aaaagaagac cggtatttca ccaccatggt tatacccgaa gccaaatcca 2220 agaccgcagg cgcaaacgtc accgcgaaaa atgagccatg ggtactggct tcccaagtgg 2280 accaatgctt cttcattacc gacccgtcaa agcccagtcg tgttgtcgtg aggagaggca 2340 aaaggaagat catcggaatg gatggagtag ccaatgagca agacttcgac aagtacggcg 2400 acccgagaat cgaacatgac gacgatgatg aagtagcagc atacaccaca agaagaagca 2460 ggaccaccct acctaaagga cgtccgttcc acagaagaac tccatttgcg aaaaagaaga 2520 gcaagaagat tgtgaacaga tagctagcta gctaagatcg attgtattta aatcgtagcc 2580 ttcatttctc gattgtattt catgggcact ttttgaacta tcatgaatat ttttaaattt 2640 catggacact cgatctcgat ccccctccat ctcgatcgct atcccacctc gccagatccg 2700 gcccccctcg ccgccgagca ccccccggtc caccggcccc ccgcaccccg cgcaccctcc 2760 cccgctccac cggcattact gtttgatgat atttttttaa taattattac cgtcttataa 2820 aaaaatatta ctgttatgat ttaaacaagt ttgaacatat ttaaacacaa ataaatatca 2880 aacagcattt taaatgcata aaaaaaattg tggagcctgg gaatcgaacc caggacctcc 2940 tggtgtgaga actggctgct gaccagtcga gctagtacag ggaacttggt gtggatcagg 3000 tcaggtggaa gataacctgt tggctcgagc agaaaaaaaa aatactaatg gcgcaccagg 3060 gtgaggtgcg ccattagtat ggatgtactt atggcgcatc gaggggtggt gcgccattag 3120 tattgtgccc tcgccctcgc ctatccccgg cccaaacata tcccctctct ctctccctcg 3180 ccctcgccct cgatcccctt cccctctcct ctcccgacgc cgctgccccg acctcctcct 3240 cgcccctcga cgtcgccctc gatccccttc ccctctcctc tcccgacgcc gtcgccccgt 3300 cgtcctcgtc ctcgccctcc tcctcgtccg cgccaccgcc gcgccgctcc gacctcctcc 3360 ttgtcccctc cggcctcctc cacctcctca ggtactgccc cacctctccc tccccctccg 3420 gcctcctcct tcctctttga atgcttaatg tggaacacaa cttacactat atgctatccg 3480 aaatcaatac aattgttcag aaaatcaata caattgttca gaaaattatc atataatttg 3540 ctatcataga attcaattcc cgagcttgaa gaattgttat tctccgtagc tgaaaaacat 3600 aggagaaagg ctacatccca tgtattaaat taaatcgaat tactagtggc agcgtcaagg 3660 tatatattct tctggtgatg ttttgtgatg gactgacaca cttgttgaac tggtagtctg 3720 aacttgcttt accgatagtc tgaacttgct ttaccgatag tctgaacttg ctttaccgat 3780 agtctgaact tgctttaccg atacatcaaa ctggtgcagc agggctgcag gagtcagtca 3840 gacaaacaag caccggaaag aagaacttga gcagagtata ggactaccac cttctcacta 3900 taagtctata acacaacatg catgtagcaa gtgaacatta ctatgaatca tttctccaat 3960 tgttcagaaa atcaatacaa ccgaaatcta aagtcgactg cactttcgag gagacagtac 4020 ccaattaaca ccaatggtgt tctaaaataa cagatttagt tacatagcta cagctataat 4080 tcagttacgt caaagttgaa gttctagaaa gagcagagca atagagatgt ttctaaaaaa 4140 tctataatct agtcagaagt acccaaataa catccgtggc agtcacagga gctgacggag 4200 tagtccaaac aacagtggca aaaaaattag gtataaaaac agtagcaaat aaaaaaagag 4260 tagcaaatat agctagggaa attttgttta ggtataaaaa cagtagcaaa taaaaaaaag 4320 cagtagcaaa ttaaaaaaac agtagcaaaa aattaggtat aaaaacagta gcaaatatag 4380 ctagggcaat tttgtttagg tataaaaaac agtagctaca atttgtaaaa agcatgagca 4440 actgatctga ttcatctcat cctctctcga tctgcaggat acaagtggaa caaggcaggg 4500 gcgtaggtgc ttgctactca ggcacggcgg cagagccaag cacaccctcc tctcccaagg 4560 taccaacccc tcttcctctc cccctgtata tactgctgtc cagtacattt ttttgctcaa 4620 tttgctgctg tccagtacat cttgttaaaa ttgctgctga ccagtacatc tttgcaatat 4680 atggtgatgt gtaccattct tgataggatg tatcaattgt agtagatggt caagaagatg 4740 tatcaattct tgacatgcca atgtattttc catgttgtga tggaggcctt ttttgccttg 4800 ttcacccgag aggcccttga gtttgccgga atgtcgatta acttccgttc cggcaaattc 4860 gggtactcca tatgtcctat tttcagcaaa ggtcatgctg aaattttccg tgaattttag 4920 catgactttg ctaaaaatag gacatatggg gcacttccga ctaatgcatg ggccggggta 4980 tcttagtact taattaagta ggatcaactg cctcttgtgt tattcatata gaagtgtgat 5040 atctactcat agttattact aatgtcagtt gctcgtcatc gataaaccct aatctggtag 5100 gatgacctac taaaaaagcc cataccacat attctacttg gatgggcgtg ttttcaccac 5160 actgtggatt atcttattgg acccaacaga gatgatgtag ttttgaatta tgaacatagg 5220 aaatgtcgtc atcggacgac gaaagtctct cgggggagtg cgactggtgc cacgacggtc 5280 gaggtctgtg cgacaggcct cacctggacg atgatcggcg cttcagcatt aagctcgagg 5340 agaccttcga agttgaaacg gtacgcaacg acgacaagtg ttttttcata attaagtatg 5400 acttcaacta ttccaacgtg taatttcatc ttttacaatt cgagtatagt ttatcccatg 5460 ccatgcaaga cgctatgtct tggagaggat ggattttgaa gatcatgaaa attttggaac 5520 gaagaaaatt cacctaagga cacatcatga tgtggatttt gaagtaaatc tgtataatgc 5580 tgagagcgta acccattttg gttgcaaaaa ttgggaagca ttttgcaaga tgtatggttt 5640 tgatgagggt atgcttgtca ccatggatct tggtgatcct ggcatcgacc aagacaatat 5700 ggacatttgg gtccttgttg atacgcctcc agttctaccg ctatgtgagt ttctcaaaca 5760 tagttaatta ttaactaatc tatattgttt atttcaaaat agttgacaac ttatttccat 5820 tgacagctta ttttgattgt tcaaaaaatg tgcggaaaat ggtagacaaa acacactaca 5880 ccgatggctc cgagttaact tatcaggaga aaaatcatct ggtcggattt tgtactgatc 5940 ttgagaatta caatatctac aatcaaactc ctcaacatta tggtcaatac gtgccactag 6000 tgcacgtgtt gaactacggt aactaccatg gagataccct ggtaagattt cttactatta 6060 cgacatccgt gcatcttttg catacttcta aaacttgtac atcattgcta actatgaagt 6120 tattactatg tttttcaaca gagaatccca gaggattgtg tgcctcattt gatgtatcag 6180 aatggcagcc ttcaagtttt gaacttatat ccaggtcatc ctacaaatct caactgtcca 6240 taccggattt ctagaagaag tggagacatg ctaatcagag aatggaaaaa atgtatggac 6300 agtcgtaagg aggttcttgg aagcaaaagg aagcgccgcg caagaattga agacaggatg 6360 atctccattc tccataatgg agagtcaggg tctatattgt tttatgctat tttaccttaa 6420 atagggtatt ttaggtcctg cctaatactg atgattatgt gctaagaaca attaagtagg 6480 gttggttcga tgactatcag gatgatgatc gtatgacttg ttattaataa cgagtagaag 6540 ttgtatgatg atgattagta ggacttgtta ggattagtat taatttcgac aaactcgcta 6600 ctcgcggtct cgagacttgt aatgttctat ctttgttcgg tcttttgatt tcggagacta 6660 atatgatgaa ttgtattcgg agactaaaat gatgaattgt attcagagac taatcttcta 6720 ttgtattcga tgaatctgtt gttgatgtgt gctgtctata ttttgtccaa ttatacattt 6780 tgtaacctgt gcaaaaaaca gaaaataaaa aaataaaaaa acctaatatt catactaatg 6840 gcgcatcaca tcatagtgcg tcattagtat gccagaggat actaatggcg catcactaaa 6900 caatgcgcca ttagtatgcc gaagttacta atggcgcatc cctttgttgt gcgccattag 6960 tatgccaaag cacctgggta tagatggccc cctgggaggc atactaatgg cgcactgttg 7020 tatatactaa tggcgcatct ggggtgcgcc attagtatat cagatactaa tggcgcacca 7080 gtggtgcgcc attagtaaaa tatactaatg gcgtgctact aatggcgcac cactaatgcg 7140 ccattaatgg ccaaattagg tgcgccatta gtaggccttt tcctagtagt ggctgct 7197 // ID FATIMA1_TM_I repbase; DNA; GRAS; 3638 BP. XX AC AF326781; XX DT 16-OCT-2002 (Rel. 4.3, Created) DT 16-OCT-2002 (Rel. 4.3, Last updated, Version 1) XX DE Triticum monococcum gypsy-type retrotransposon, FATIMA1_TM_I, DE internal region. XX KW LTR retrotransposon; GYPSY superfamily; internal region; TREP252; KW FATIMA1_TM_I. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RP 1-3638 RA Wicker T., Stein N., Albar L., Feuillet C., Schlagenhauf E. RA and Keller B.; RT "Analysis of a contiguous 211 kb sequence in diploid wheat RT (Triticum monococcum L.) reveals multiple mechanisms of genome RT evolution."; RL Plant J 26(3), 307-316 (2001). XX RN [2] RP 1-3638 RA Dubcovsky J.; RT "Direct Submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AF326781; Positions 141955 145592. XX SQ Sequence 3638 BP; 651 A; 913 C; 1075 G; 999 T; 0 other; ttacatgtct tggccagggg caggccgcgg aattgtatta aaaaataggt atactgctcg 60 caatagagac cacctgggag ttccataatg cggcgtggct tgtctgcttt cctgggtctt 120 gcatcgtttg tgtggcagtt gaattgccga acgggtcgtc cgaagtatgg agtcctgaga 180 gtaaaagaaa aaaaaagaat ccggcagccc ctggtgcggt ttaagccgta tttcgggcgt 240 gccgtgatag tgccccttcc cctgtgccca tggtatttca agagcgtagt tatgtatgtg 300 aagcactggt ttcgctatat cgcgagggct agggttgggg ccgcattgct acgctagctc 360 agaacatgcc aggcggtctt gttgtggggt actccgggcg cgcttgatag tgtccggctt 420 tttgaaggcc gaactggaga actgcctaga gaggctgctt tgtacttctg ctgcgagcgc 480 tgccgtgtgc tcctccattc ggagggagca ttcagtgttc ccattgaccg tgattactcc 540 tctagggcct ggcatcttga tcttgaggta tgcatagtgc ggtaccgcgt tgaattttgc 600 gaatgcggtt cgcccgagca gtgcgtgata gccactacgg aacgggacta tgtcgaagat 660 taactcctcg cttcggaagt tatccggaga tccgaagacc acttccaatg taactgagcc 720 tgtatagttg gcttctacac ctggtatgac acctttaaag gtcattttgg tgggcttgat 780 cctcgaggga tctatgccta ttttttgcac tgtatcctag taaagcaggt tcaggctgtg 840 ccgctgtcca tgaggactct tgtgagatga aatccgtcaa tgattgggtc gagaaccaat 900 gcggcgaagc caccgtgacg gatgctagtg gggtggtccc ttcgatcaaa ggtgatcggg 960 caggaggacc atgggttgaa ctttggggcg actggctcca tcgcatatac gtcccgtaac 1020 gcacgcttct gctccctctt ggggatgtgg gttgcgtata tcatgttcac cgtccgcact 1080 tgcgggggaa atcccttttg tccattgttg ttcggcggcc tgggctcctc ctcgtcgtcg 1140 ctatgcagcc ccttgtcttt gttttcgact cttaacttgc ctgcctgctt gaacacctga 1200 caatccctgt tggtgtgatt ggctggcttt tcggggttgc catgtatctg gcacaagcgg 1260 tcgagtattc ggtccaaact ggacgggccc tgagtatttc ttttgaatgg ccttttccgt 1320 tgactgggtt tgtagcctcg gaatctggca ttaactgtcg tatcctcatt gctgtcgctg 1380 ttaatgcggg gcttttgttt gttccgacgc gacctgtcac ttttgtcctt ggtattcgaa 1440 ttaccagggt tcttggttaa gttgttgctg cgagctagcc agctgtcttc tcccgcgcaa 1500 aagcgggtca tgagtgtcgt gagggttgcg atagatttcg gcttttcctg tcccaggtgc 1560 cgggcaagcc actcatcacg gatattatgc ttgaaggccg ctaaggcctt tgcgtccgga 1620 cagtcgacta tctggttttt ctttgttagg aaccgtgtcc agaattgcct ggccgattcc 1680 tctggctgct gaattatgtg gcttaggtca tcggcgtccg gtggtcgcac ataagtgccc 1740 tggaagttgt caaggaatgc ggcttccagg tcctcccaag aaccgattga gtctactggc 1800 aagctgttaa gccaatcccg ggccggtccc ttaagtttga gtgggaggta tttgatggcg 1860 tgtagatcat caccgcgggc catgtggata tgaaggagat aatcctcgat ccataccgca 1920 ggatctgttg tgccatcata tgatttgatg tttatgggtt tgaaaccgtc agggatttta 1980 tgatccatta cttcatctgt gaagcatagt gggtgtgcgg cgcctctgta ttgggctata 2040 tcacgacgca gcttgaagga gctttgtctg ttgagttcgg cccggctgga ttcattgcat 2100 ccggagtgac ggtcaccgtc acgtgccgtg gggtgcctgc gcgatccata gatcgatctt 2160 gtttgccttg ccttgtcctc cagtatgtcg cgcaggtcgg gcgcattttc ccgtgcctta 2220 gtatgcttga cgcggtgccg gggcatggct tgagtggagg gccgagaggc ctctctgtcg 2280 cagccacgag gtggccgatc ggccatgtca tgcgctggtg atgtaggtgc ttcctcctct 2340 agtcggggta gcagcctgtg ctttgggtaa ctcttggagg ggcgttcgag ttcatactct 2400 tcggccgcaa ggacttcagt ccatctatca gctagcaaat cctgatcagc tctaagctgt 2460 tgctgctttt tcttgaggct gcttgccgtg gccataagcc tgcgtttaaa acgctcttgt 2520 tcggcgagat gctctggcac gacgaactcg tcgtcgtcga ggcttgcctc gtcttcggag 2580 ggaggcatat gattatcgtc ctcaacctct ttgtccgcca ccctctcgtg agggctggct 2640 tctctgtcct cctgtgctga ctcttgctgg agggggtgtt cttcggtgct atccggagta 2700 gtattatctc ccgtgccgga atcaccgttt ttcctttggc gggatttaga gcggcgccgc 2760 tgacgccggc gcttgggctg tttcttagag gtatcgtccc ccgctattcc atcgccgtct 2820 ccatcctttg gagtgtccac catatatatg tcatatgacg aggtggcctt ccagcgccct 2880 acatgtgctg gttcttgttc gtctcctgca tcgtcgtcca taccgtcgat gtcttcggag 2940 tcgaagtcaa gcatgtcggt taagtcgtcg acagtggcta cgaagtgggt ggtgggtggg 3000 ttttgaattt cttcatcgtc cgtatcccaa ccttgctgac cgtagtccgg ctagggctct 3060 cctgataaag agagagactt tagagaattc aggatgtcgc cgaagggcga gtgctgaaag 3120 atgtccacgg cggtgaactc cattatcggc gcccaatcgg attcgatcgg caggggcgcg 3180 gggggctcgg agttcggaga ggaatccggc tcctcggagt cacgggccat gcggagtgcg 3240 gggttcgagt tcggctcgat cgcctctgag atcgcagccc ctgaggcaac gtccaaccgc 3300 tgatcctcga tcggcgcagt aggctccgaa tcaatggtcg gaaccggtgt gtgtgcggcc 3360 tccaaagcgc tgttcggcgg cagagctata tcatgcccat cgagacagtg cggcgcgctt 3420 ggctgtggct cgaatccgtc gaagatcaag tccccgcgga tgtcagccgt atagtttagg 3480 cttccaaacc tgacctgatg gccaggggcg tagctttcga tctgctcaag gtggccaagc 3540 gaattggccc gcagtgcgaa gccgccgaag acgaagatct gtccggggag aaaagtctca 3600 ccctggactg catcgttgtt gatgatcgaa ggagccat 3638 // ID HUCK1-I_ZM repbase; DNA; GRAS; 11856 BP. XX AC . XX DT 11-JUL-2003 (Rel. 8.06, Created) DT 11-JUL-2003 (Rel. 8.06, Last updated, Version 1) XX DE Zea mays retrotransposon Huck-1 internal sequence - a consensus. XX KW LTR Retrotransposon; Transposable Element; HUCK1-I_ZM; KW HUCK1-LTR_ZM. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RA SanMiguel J.P., Gaut S.B., Tikhonov A., Nakajima Y. RA and Bennetzen L.J.; RT "The Paleontology of Intergene Retrotransposons of Maize: Dating RT the Strata."; RL Unpublished. XX RN [2] RA SanMiguel J.P.; RT "Direct submission."; RL Direct Submission to Genbank (23-FEB-1998)Biological Sciences, RL Purdue University, Hansen LSRB Rm 339, West Lafayette, IN 47907, RL USA. XX RN [3] RP 1-11856 RA Jurka J.; RT "A consensus sequence for internal sequence for Huck-1 RT retrotransposon from Zea mays."; RL Direct Submission to Repbase Update (30-JUN-2003). XX DR [3] (Consensus) XX SQ Sequence 11856 BP; 2229 A; 4048 C; 3479 G; 1682 T; 418 other; agttggcgcg ccaggtaggg gcctgctgcg tgttgacgaa cagcttcccg tcaagctcca 60 gatgggcagt ctccagcaac ctctccaacc cgggacagtg ctccgtttcg ggagtcttga 120 gttcatgtcc ttcgacggca gctacgacat gatactcctt ccaccgccgc gcgacaacga 180 caatggcggc cgacagcccg cccgccggcg gcggaatcga cgacgtcttc cccgcgtggt 240 ggaagaacaa cattcgagct cgccccgtcc tctcccccgc caacggagga ggaggcgggg 300 caaccaaggc caagcgggag gccgcgcctc gtcggctgtc gagcgagtcg acatccctag 360 cgccccaacg ggggcgcgtc gggcgtcgac ctcgcgtttg agacgaaggc gagcgccgtc 420 tccccgcgac acgccaatcc cgagcaagtg gacgacgcca gcgcgctcgt ggagggcttg 480 caggacgtcg ccctcgtacc tgagacgacg gtgcaatcag tccccgacgt gactatgtcg 540 ctgctcgtcg accaaaaggt accgaccgat tcccatccta cgtcatttcg actcagcctc 600 aacccgccta gcgaccttgc tttggcgggc gctctcgtag aggcgagttc aaaccctctg 660 gggtttcgca tgcggtcgcc ttgggaccgg ctgacggacg tctcgaccta cgggccctct 720 gggtccgagg aagatgacga ccccagcatc tgttgggatt tctctggatt tggcaacccc 780 agtgccatgc gggacttcat gaccgcatgt gactactgcc tctccgactg ttccgatggt 840 agccgcagcc tcgacgacga ggactgcggc ccaagccgcg aatgtttcca cgtcgagcta 900 ggggatccct ccgaaggcaa ccatctcggc atgccggagg acggtgatct ccctaggccg 960 gtgcctcgcg ctgacatccc gcgggagcta gctgtggtcc ccgttccggc ggggggtcac 1020 gacccacagc tcgagcaagt ccgcggggcg caggccaggc tcgacgaggg agcaggagcg 1080 cttgagccga tccgccggga cgtcgggcag gtatgggcgg gccaaccccc ggccagagaa 1140 atacgtcacc tgccccaggg tttccagcac cgcgtcgcca acgacgtcag ggtcaggccg 1200 ccacccgcat ccagtggggt cggtcagaac ctggctgcag cagcgatgct tctccgcgcg 1260 atgccggagc catcaaccac cgagggtcgg cgaatccagg gagagctcaa gaatctcctg 1320 gaaggcgctg cggtccgacg ggccgagagc tctgcctccc gaaggcaggg atacccctcg 1380 gaacctcatg tcgcgacttc ccgattcatg cgggaagcct cggtctacac cgggcgcacg 1440 cgcaacaccg cgcctgcggc cccgggccac ctcggcaacg agcaccatca tcgcgaccgt 1500 cgggcccacc tcaggcgtgg gggacgctac gacagcgggg aggatcggag tccctcgccc 1560 gaaccacccg gtccgcaggc cttcagccgg gccatccgac gggcrccgtt cccgacccgg 1620 ttccgacccc cgactactat cacaaagtac tcgggggaaa cgrgaccgga actgtggctc 1680 gcggactacc gcctggcctg ccaactgggt ggaacggacg acgacaacct catcatccgc 1740 aacctccccc tgttcctctc cgacaccgct cgcgcctggt tggagcacct gcctccgggg 1800 cagatctcca actgggatga cctggtccaa gccttcgccg gcaatttcca gggcacgtac 1860 gtgcgccccg ggaattcctg ggacctccga agctgccggc agcagccggg agagtctctc 1920 cgggactaca tccggcgatt ctcgaagcag cgcaccgagc tgcccaacat caccgactcr 1980 gatgtcatcg gcgcgttcct tgccggcacc acctgccgcg acctggtgag caagttgggt 2040 cgcaagaccc ccaccagggc gagcgagctg atggacatcg ccaccaagtt cgcctctggc 2100 caggaggcgg tcgaggccat cttccgaaag gacaagcagc cccagggccg cccatcggaa 2160 gatgctcccg aggcgtctac tccgcgcggc gccaagaaga aaggcaagaa gaagtcgcaa 2220 gcgaaacgcg acgccgccga cgcggacctt gtcgccgccg ccgagtacaa gaaccctcgg 2280 aagccccccg gaggtgccaa cctcttcgac aagatgctca aggagccgtg cccctatcat 2340 caggggcccg tcaagcacac ccttgaggag tgcgtcatgc ttcggcgcca cttccacagg 2400 gccgggccac ccgcggaggg tggcagggcc cgcgacgacg acaagaagga agatcaccaa 2460 gcaggagagt tccccgaggt ccgcgactgc ttcatgatct acggtgggca tgcggcgaat 2520 gcctcggctc ggcatcgcaa gcaagagcgc cgggaggtct gctcggtgaa ggtggcggcg 2580 ccagtctacc tagactggtc cgacaagccc atcaccttcg accaagctga ccaccccgac 2640 cacgtgccga gcccggggaa atacccgctc gtcgtcgacc ccatcgtcgg cgacgtcagg 2700 ctcaccaagg tccttatgga cgggggcagc tgcctcaaca tcatctacgc cgagaccctc 2760 aggctcctgc gcgtcgatct gtcctccgtc cgagcaggcg ctgcgccctt ccacgggatc 2820 attcccggga agcgcgtcca gcccctcgga cgactcgacc ttcccgtctg cttcggaacg 2880 ccctccaact tccgaaggga gactctgacg ttcgaggtgg tcgggttccg aggaacctac 2940 cacgcggtac tggggaggcc atgctacgcg aagttcatgg ccgtccccaa ctacacctac 3000 ctgaagctca agatgccggg ccccaacggg gtcatcaccg tcggccccac gtacaaacac 3060 gcgttcgaat gcgacgtgga gtgcgtggag tacgccgagg ccctcgccga gtccgaggcc 3120 ctcatcgccg acctggaaag cctctccaaa gaggtgccag acgtgaagcg hcatgccggc 3180 aacttcgagc cagtggagac ggttaaggcc gtccctctcg accccagtgg cgacacctcc 3240 aagcagatcc ggatcggttc cgggctcgac cccaaatagg aagcagtgct cgtcgacttt 3300 ctccgcgcaa acgccgacgt ctttgcgtgg agtccctcgg acatgcccgg cataccgagg 3360 gatgtcgccg agcactcgct ggatattcgg gccggagccc gacccgtcaa gcagcctctg 3420 cgcygattcr acraggagaa gcgcagagtg ataggcragg agatccacaa gctaaaagaa 3480 gcgaaaagcg tcaagctcaa ccctgaaagg tgggtcctcg gggcgcccca gggcatggtc 3540 ttggagttca tyatctccra acggggcatc gaagccaacc aggagaagac cccgaccatc 3600 gcacagcmcc ccgagccctt gctgggggta cccgggggct kcacgcaccc ccgggaaagg 3660 ccgcttgtca tcgccaacgt tctggagccc ggaacgtaca agctggccgg cggtcaaggc 3720 gaggtctacg gcaacgcttg gaacatccga cagctacgtc gcttctaccc ttaagatgtt 3780 ttcaagctgt tcgtatacct cgctcccaca caagtmtmag tcgtcaagga agggtcggcc 3840 tcgcctcggc agagcccgac cctccctcrg gggbcyaaaa aagggggaac ccctctgygt 3900 caagatyggg ygtacctmty ckcatcmaaa attttcgatc aaaaaggggc ytttgcgttc 3960 tcccggctat gtcagaaaca gggccccgag ragcgaacgt gggtrcatgt aagtggcrag 4020 gccgactgag ccgaggaatt cctatgcctc cgggttaggg acaccttcac tcatcacccg 4080 ccacgaaaaa tgacccadac tcgggaagcc accctattat tgacaaacaa rrccggacac 4140 gcaaaataaa aggaagaara gtacgacttt atgcaatsaa aacaaagtgt tcaggcctca 4200 acggccgcag taagacacac gcacatccaa cagaaactgt tccarcaaga gttaggcgyc 4260 gccttgggaa ggagccgcgc cctcagctcc gtccccgcck tcggtaaggt ccayctcggc 4320 ttccggcgac ggcgcagggg gaaggatctc cgcctcaaag gtggtcgcca gcaccgcgct 4380 cggacccgcg gcgaccgcgt cgagccgctg gacttckgcc agggcagctt cgtcttcgtc 4440 aggaagrcaa tacccctcac taacccgctc caggtccaca acgtagtggg aagcgagcac 4500 ggcgaaggcc cgcctgacgc cgtggtgtag cgcctcgcgg agtctgccgc gcgcgtgatc 4560 acccaaggct tgaaggcggc tttgagggga gcttcctgaa gggacgtcgc cggagccaag 4620 gatccgataa acgtccgaga cggcctcgga catggccgcg aggtcggcct ccctctgctc 4680 ggcmgccccg gcaagcgcct tgsmgagcgc cttggcggac tcgtcaaggg cggactcgag 4740 ctctrcgaac agccagaaga aagayctcaa acacaagcrg aggaaacaga caagaacaag 4800 aaccakggay ggccaaggcg tacctccggc tcgggcacgc tgctccgagg ycgcgacctg 4860 ggctgcggct amgtcrgckg cgagggyktc agcctggctt tcrgcctcgk cagcccggcc 4920 ccgagattgg tcccgctcct cgacgacctg gacgaactcc gaccgctgcy gttgcagctc 4980 bvbgbgccac cvggccgcct ctgcgcgcgc cgctgccgcc tcggctctca ggtcggygca 5040 gagcaactgg aggtccgcta cctcggcacc ctgctgagar aggcgcgcrg tagccccggc 5100 aagcgaggtc ctcagggayc gcagcgagcc ccagacatcg acctcgcggc ggatgaacga 5160 cgacttggcg gcgctccgat ccgtcagatc ctgagggaag gaaacggggc gtcacgaaga 5220 acgcctcgat cacagaaarg aaaaggtatg cctgaaaccg ttacctggag gattttgggg 5280 acgtccctgc agaaaacctc cakcgacgac cggagcgacc ccaccgttgc ttcagcacac 5340 tcgcggagct catcccagga ctggtcctcc tgttcatcgt cgagaacgaa gacrgggtcc 5400 gaggcctcrc gggtccggaa ccggagcaac tggcgycggr cctcggggct ccgccgcaca 5460 agcgatgagg ctkccscccg gckggacggw tcgcgcytcc ccgcccacct cbcttccgag 5520 gcacygggcg ccgacgcatc ggccgtctcg acgccggcag caaccggtcg ctctccgacc 5580 gggacggcgg cgacttcggt agcrgcaggc gccagcatgg ccggcacgac aggcgggctc 5640 grgaccacgt cggcgccagc cgcctcccct atcacgatgg ccgcctcggc agargagcca 5700 gcctcgggaa cctgctccmc rgcgacmggt gtcrcccgag ccccctgcgg tgaaacgccy 5760 tgcgaaaggg tcggctgaac grcaaggccc ggwgcggcgc tggccgcaca agccggcgcc 5820 gtcttaaggg ccttccgggg tgccaggtcg gtckggccat ggctycgctt gctgaggaga 5880 aarggaaaat cacggycgrg acatatgaat ggraagccaa gacgaagaca ttccsagata 5940 cttacccact ccgggccatg atccaccgcg cctgggggga ggtctcttgg atcccggccc 6000 ccggaacmgc cgccgaggtc cgcttcgcyg gcaacttcgg caccaccctt gctttggacg 6060 cccggggagc agatsgcccg ggcackgtcg cgatgacctg agggtcaccy ycmtgcgctg 6120 ccggcacgag cggcggctcc tggggagcag acgccctgrc ctggcccccc ggrgtcacct 6180 cagctcctcc agccgagggg tcaggtgccc tctcgggttg cccccgtgcc tcgggccggg 6240 accccgacgt cccgactccg gggactgacg gcgtcrgccc gctcgggggc tggctcgacg 6300 gctcctggcc amaccccaag ccggggctga ggccgagacg ggcggcchcc tcgtcatcat 6360 chtcatcatc atcgtcgtcg tcgggcgtct ccggcgacgg ctccctcggg agtccttccc 6420 tcctgctggc gacggcgctt ttcaaggcgt cccgagcccg ctccgctcgc gggcccgggc 6480 cttctccgcg tcttcttctt cttctccttc gcggcgaccc gccgcgctgc tcbgtccgcc 6540 gcgtcctcbg ggacccgtgg cagggaaggc ttgtgccacc ccacctaaag aggggggaaa 6600 gaavcccgat cgtaagaacc aggagcaacc cgatgtatga agaaggaagg agcgaacact 6660 caccagagtc acgcacccct ggtcggggcg catchgaagc ggagaaggcg tgggggtccg 6720 gcttccccaa cgcagccgac acccgccatt ggagggcgtc gaagggaagg atcagggaca 6780 tccgtgagcc ctcccagtca gccttcgggg tcatctccca aagcgacagc cgccgctccg 6840 ccaaggaagc accctccgac ggtggatgcg gcaatcactc ccgcagcggt gagtcccccc 6900 tcccgcaacg cctccaaggc ctggagaagg ggttcgaggt tcttctgtct ttcgtgcggg 6960 gtcccgtgac gccaggcgtc ggtggcggcg gtgactactc gctgggagaa cggcgggagc 7020 aactcaccgt cgttccggag gtagaaccac cggcgctgcc accccttgtt cgaggacgcg 7080 aggahggcag gaatatactg cgacgcccgc gactgcctca gcaggagggt gcagccgccg 7140 gcccgcaccg ctgcacggac cttcctctcc cccgtcggcg aggcaaaaag ctcggcgaaa 7200 aagagatgag tccacaaatc ccaatggggg gcgatcccca aatacccttc gcacaccgct 7260 acgaagagcg gcctgcgaga tggagttggg ggaggttatg caactccacc ccatagtggt 7320 acaggatcgc ccgcataaag cggcccgccg gcacaccgaa tccccgctcg tgaaggagac 7380 gaagctcacg acgtaccccg gcggtgggga tggagcggct ccgcccacgg gaggaatcca 7440 ttctggtcgc tgctcatcgg tgagagggcg aagcaaaccc tcgccgacca gctcctccag 7500 atcgctcgcc gtcaccgtgg aaaagggcca tggatcgcgc ggcgagatga tggtcacccg 7560 gtcagccatc accaaacgga agggatggcg gcgcaagggg caggaagggc ggtttcctct 7620 tctctggcta agtctctcgg gttgcgaaaa cctaaagggg aggcaggaag cggagcgaag 7680 aaccgtcacc agaccctctc ccgggtatat aaagaccaag gcgagaccgt ttccagcgtt 7740 ccgcccggac cggacgcggg attcaaaaac gcgaagcgaa acagccgttc ctcgaacggc 7800 tcgcgcacgc gcaacggccg ccccgcgaac cactcgcccc gtcgcattaa ctccgcggcg 7860 ggacaggcgg cgcctctggc aggagaagcg agcgacgctt cgccttcgcc ataatgaccg 7920 cgtcaaaaaa ggtacgccac gtcgttyggt ttcgkatcct tttbccytcc ttcttctttt 7980 tctatctctt gcaacaggga ccgggaaagg gggatacccc gaaarggatc cttctccgtg 8040 aaggaaacag gctccgagcc tcccactact gatcagaggt tcgaaggctg gcccctcgaa 8100 gggkvgggbv ttcaacagcc gcctcagagc gcgtgggccc cacacccact actggtcaga 8160 ggttcgaagg ccggcccctc ggaagggttc macggccgcc tcaggctact cgggctccgc 8220 gcccaytact gatcaggggt tcgaaggctg gcccccgaag ggttcgacag ccgcctcaga 8280 cacmgagcga gggatgacca kgggtacgtt cgatacataa ccaaggctcg ggctgcgctc 8340 mgttggcrcg cyaggtmggk kccgrcwscg kcgkgamgaa ymkyktcmcg kaawscyccm 8400 grwgggargy atcsagcmmc cttyccgsct cgagasggga cygggtcccg sgratctcsm 8460 gywsrtgyyc ttcgassgcr sctccgrsmy gatasycsty ccccmgccra gsgrscacga 8520 cmgtsgmckc ggaaarcccg ctcgycggcs acggrakmca cgatgtyykc cccccgtgga 8580 ggaaracmtr cmkccgtgct csccccgctc cytccssaam sgmcrsrgrr ggrsgyakgk 8640 maaamaggsc mrtstggsmg kgagcgcccy ctcgscckkc gmgsaggyys aggggctsst 8700 cgcsccaacg ccggctccgg ccgaacckyt gmcassgkya acakaccarc ccgagmgctt 8760 kggccccgac cgwccaccmg gsctacsgcc aggtcgcmgs mggcaccctc gmgaccagcc 8820 kaagcgtygy gmcmcgcatw amgacswcga mggagyaaam csacycctmc gagrcytcgk 8880 ggsctmcasy cgrcsagkrg gtwcgcrcgc acccmcaksw mcaraatkyw accgmcargg 8940 tcgrcccgcc aagcracawm ggtkcgrcgg aagcctycaw rsrrgygwgw acactcccty 9000 cgaggytcgg krkgckattg tcggggacca taattagggg tatctcgacc tacgggccct 9060 cggggcccga gagactccta atgctcagct ggtaacccga tccatcagca caaagctgca 9120 aaggcctgat gggtgcgatt aagatcaggg atcagtccat tcgagsgaac tcgatcacgc 9180 ctcgcccgag cctcggctac gacaagggca gccgacccct ggaagrtttc cgtctcgccc 9240 gaggcccccc tccagcagcg racacacttc cggctcgccc gaacggtgat ctaggcccag 9300 ycttcgctma gaagcaaatc ctgmccaaat cractcgcgc accgaccaaa ycgctagggg 9360 catttaagrc aacggtggcc ggacaccttt accctgacrm rcgccsdccc gtcgacagag 9420 gagsagcgct tgagccgatc cgccgggaca tcgggcaccg aagtgaccgc cgtccccycg 9480 ccgcwccact gacccgtctg acaaaaggac agcgccgcct gcgccgctcc gactgcagtg 9540 ccactcgaca gagtgagkct gacaggcagc cagagagccc ggcctcaggc gccataggaa 9600 actccgctyc gcccgacccc agggctcgga ctcgggctcr gmcccggaag acggcgaact 9660 ccgctccgcc cgaccccgcg gtccgacggg ccgaaagctc ygcctcccga aggcaggggt 9720 acccctcgga accagggctc ggactcgggc taagcctgcg ggccggaaga cggcgaactc 9780 cgctccgccc caacacagcg cctgcggccc cgggtgaccc cagggctcgg actcgggact 9840 cagccccgga agacgacgaa ctccgctccg cccgacccgg mgggctcgga ctcgggctsa 9900 gaccckacrr mmgsggrrmk smkctscgcc ccwcsccagr actmssmsky scgcwgrsty 9960 ycggamgasg scgaacacgg gcgccgttcg ctccscccka ccsaaggsct cgkactckgg 10020 ctaaggccck gaagacggcg aagctccgct ccgcccgacc cgagggctcg gactcgggct 10080 cagccccgga agacgacgaa tctccgcttc gcccgacccc agggctcgga ctccgccytg 10140 gcctcmgccg aacgrtctcc gcctcgcccg accccggggc tcggactcga cctcggccac 10200 ggaagaccag actcgacctc gacttcggag gagcctccac gtcgcccaac ctaagggctc 10260 ggaccgacca cgtcaacagg aggcgccggg agagtctctc cggatcatya ccctacccct 10320 agctgactcr ggctacgggc tgcccaacat caccgaytcg gatgtcatcg gcgcgttcct 10380 cggaacaaga ccggcgtccc acctggtgat ctggctcgct ccgccaraca agyaatgatg 10440 gcgccccgca agctctatga cgaccaagtt cgcctctggc caggggcggc tctcagcccy 10500 cttacggaag caagaggacg tcaagggccg cccaccgcaa ggactcgaca gccccgawac 10560 tcagcagctg tccttscrca aggctccgrc gctcctccga cggccacgac accacacsaa 10620 cagggtcctt gtcgccgccg ccgagtacaa gaaccctcgg aaaccccccg gaggtgccgc 10680 cmaaayctct mcggctgcca cgawggcatg yacytagggc gctagctccc cctccgctag 10740 acwcgttagc actctgctac accggcgcca cttccacagg gccgggcccc ccattgtaca 10800 tcctggatcc tctccttacg cctataaaag gaaggaccag ggccctctta ccagagggtt 10860 ggccgcgcgg ggaagaggac gggacaggcg ctcgcgtgag gcctccgctc gcttccctca 10920 ccaccrcgtg gacgcttgta acccccttac tgcaagcgcg ccagtctacc tagactcacc 10980 cgacagaccc atcaccttcg accaggccga ccacccctac cacgtgccga gcccggggaa 11040 atacccgctc gtygtcgacc ccgtcatcgg cgacgtcagg ctcaccaagg tcctcatgga 11100 cggaggcagc agcctcaaca tcatctacgc cgagaccctc gggctcctgc gtgtcgatct 11160 gtcctcggtc cgggcaggcg ctgcgccttt ccacgggatc atccccggga agcgcgtcca 11220 gcccctcgga caactcgacc ttcccgtctg cttcgggaca ccctccaact tccgaaggga 11280 gaccctcacg ttcgaggtgg tcgggttccg aggaacctac cacgcagtrc tggggcgcgg 11340 gacctacgcg aagttcatgg ccgaacacga aggcacctac ctcaagctca agatgccggg 11400 ccccaacggg gtcatcaccg tcggccccac gtaccaacac gcgttcgaat gcgccgcggg 11460 attyccacct ctcgccgcac gcctcgctcc ggcygcctcg ctcctctccc cccttcgcgc 11520 tccstctcgc gaggctcgac ccgtgaagcg ccacgccatc tgggctgggg cacgcggcga 11580 carttmactc gtcggcccya gggacccgma gcgacccccg gtctcgaaac gggatcggct 11640 ccgagctcga ycccaaccga caagcagtgc tcgtcgactt tctccgcgca aacgccgacg 11700 ttttcgcgtg gagtccctcg gacatgcccg gcataccgag ggatgtcgcc gagcactcgc 11760 tggatatccg agctggagcc cgacccgtga agcagcctct gcgccgattc gacgaagaaa 11820 agcgcagagc cataggcgag gagatccaca agctaa 11856 // ID Gypsy52-ZM_I repbase; DNA; GRAS; 2863 BP. XX AC AC196164; XX DT 09-MAR-2008 (Rel. 13.03, Created) DT 09-MAR-2008 (Rel. 13.03, Last updated, Version 1) XX DE LTR retrotransposon from maize: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW internal portion; Gypsy52-ZM; Gypsy52-ZM_LTR; Gypsy52-ZM_I. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-2863 RA Kohany O. and Jurka J.; RT "LTR retrotransposons from maize."; RL Repbase Reports 8(3), 317-317 (2008). XX DR Genome; AC196164; Positions 20623 23485. XX CC 'CCTGG' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 41..2773 FT /product="Gypsy52-ZM_I_1p" FT /translation="MEAAIQQILDAMAHMELRLTDALAGCGGEHRMEDSVS FT GLPSSNSATSSVAAPMYDDDVFSSSAAPPTGFHGEPIFDEEPDNSITESVD FT VSCHDHLFLLDTAWDRSHQHNASIPGQRQHLGRSARLQRRPLQHLTVDPVS FT AVHGSNDSELSHSEVDRVPATAALSNPREKVHDGLVGVTELSREVRLLRFS FT LPSLNQALNTSIGKHVLDCAIIDGKSCLRAHTLRSVADEVGHTTSGMVQTK FT HINNQEKLDGMVIVEHNTFGLFSREFAHGLHLIGPREVRAPSLVRAPEQSS FT LPDLHPSVIARMKQMARKSMGGKAPRKQLATKGARKSETRTCGVKKAHQLR FT PGTAALCEIRQYKKSTELLIRKLLFQHLVGHDATWFLLDIAFYSHNRFQED FT STSISGIPMSNTRSAEEEEVLATSPNRCLTNCFKLIQSCFSWDAVPYRQPW FT PPPHMQVEFGCGSADLCPIPWLFFTTIGTNEEIIDITSDDDKVDNVVDQLI FT DEQIAAVVFVPACMEATPNNGINTSKTMETFAAHQSPEYDSGLKDKDQRIS FT FEDEISEGGQAEQSTPQQELCAMPPDTSDRETVERTTRSIEVEHFSQVESK FT HKMNSMSVEASEHVTITQIEKKQVQQVEITQELDSLPICSREHSDEALEGE FT RTVQAGLEQECEVLGILSTITSDIFAIGLSPNQYTVYFYQNLMACMMLIRR FT RFLLSFGRSWDAVTYKQPWPPPVHVVILGDGLSVRLTPWQPFDTDIYSFPV FT NRPESSASVFGIATESTQCAYDSQGNSVSTILLMMQRCLYEQMMQYKSEEG FT CTRVVKCLPPADASLLVWAVNQMTDPLIALMYAVQVMIFLKDKDESPREDV FT LLLQKDPFDGNRHQKPNVTLAISLRKDLGVIAACTAPTNEVPTYVEDYTSS FT SKSATAG" XX SQ Sequence 2863 BP; 706 A; 769 C; 766 G; 622 T; 0 other; tttggtatca gaactactcg catcctggaa tattgcaccc atggaggcgg caatacagca 60 gattctcgac gcgatggcgc acatggagct ccgcttgacc gatgcgttgg ctggctgtgg 120 tggcgagcac aggatggagg actcggtctc agggctgcca tcttccaact ccgccacctc 180 ctccgtcgcc gcgccgatgt acgacgacga tgtgttcagc tcttcggcag ccccacccac 240 aggcttccat ggagagccta ttttcgacga ggagcccgac aactccatca ccgagtccgt 300 cgacgtctcg tgccacgacc atctcttcct cctcgacacc gcctgggacc gctcgcacca 360 gcacaacgcc agcatcccag gacagcgcca gcatctcggt cgcagcgcgc ggctgcagcg 420 ccgaccgcta cagcacctga ccgtcgaccc cgtcagcgcc gtccatggca gcaacgactc 480 tgagctgtcc cacagcgagg tcgacagggt ccctgcgacc gccgcgctct ccaacccgcg 540 cgagaaggtc cacgacgggc tcgtcggcgt gacggagttg tcccgcgaag tccgactcct 600 ccgcttctcc ttgccgtcac tgaaccaggc gctcaacaca tccatcggca agcacgttct 660 cgactgcgcc atcatcgacg gaaagtcgtg cttgcgggca cacacgttga ggagcgtcgc 720 ggacgaggtt ggacacacga cctcagggat ggtccagacg aaacacatca acaaccagga 780 gaagttggac gggatggtca ttgtcgagca caacaccttc ggtctcttct ctagggagtt 840 cgcgcacggg ctccacctca tcggcccccg cgaagtcaga gccccatccc tggttcgagc 900 cccagagcag agcagcctcc ccgatctcca cccctctgtg atagcccgca tgaagcagat 960 ggcgcgcaag tcgatgggcg gcaaggcgcc gcggaagcag ctggcaacga agggggcgcg 1020 caagtcggag acgaggacgt gcggcgtgaa gaaggcgcac cagctccgcc cgggcaccgc 1080 cgcgctgtgc gagatccgtc agtacaagaa gagcacggag ctgctaatcc gcaagctctt 1140 gttccagcac ctcgtcggcc acgacgccac atggttcctg ctcgacatcg ccttctacag 1200 ccacaacagg ttccaggagg actccaccag tatcagcggg atccccatgt ccaacaccag 1260 gagcgcagag gaggaggagg ttctcgccac ctcgcccaac aggtgtttga cgaattgctt 1320 caaactcata caaagttgtt ttagctggga tgcagtgcca tatcgacagc cttggccacc 1380 acctcatatg caggttgagt ttgggtgtgg aagtgctgat ttatgtccaa ttccatggct 1440 gtttttcacc acaattggta ccaatgagga gataattgac atcacatctg atgatgacaa 1500 ggttgataat gtggttgatc agctgattga tgaacagatc gcagcagtag tctttgtgcc 1560 agcgtgtatg gaagctacgc ctaataatgg gataaataca agcaaaacca tggagacctt 1620 tgctgctcat cagtctcctg agtatgatag tggattgaaa gataaggatc agagaatatc 1680 atttgaagat gagatatctg agggtgggca agctgaacaa agtactccac aacaggaatt 1740 gtgtgctatg ccaccagata ctagtgaccg tgaaactgtt gagaggacaa ccagaagtat 1800 tgaggtggag catttctctc aggttgagtc aaagcataaa atgaactcta tgtccgtgga 1860 agcttctgag catgtcacta tcactcagat tgagaagaag caggttcaac aagttgagat 1920 aactcaggag ttagattcac tgccgatatg ttctagggag cattctgatg aggcacttga 1980 aggggagaga acagtgcagg ctgggttgga acaagagtgt gaggtgctgg ggatattgtc 2040 aacgatcacc tcggatattt ttgcaatagg gctcagtcca aatcagtata ccgtgtattt 2100 ttatcagaat ttgatggcct gcatgatgtt gatccgtcgc agattcttgc tgtcatttgg 2160 acgtagttgg gatgcggtga cgtacaagca accatggcca ccacccgtgc atgttgtgat 2220 actaggagat ggcttgtccg tcaggcttac accttggcaa ccatttgata ctgatatcta 2280 cagctttcct gtgaacagac cagaatcatc tgcaagtgtc tttggtattg caacagaatc 2340 aacgcagtgt gcctatgatt cccaaggaaa cagtgtctcg acaatcctct tgatgatgca 2400 aagatgcctt tatgaacaga tgatgcaata caaatctgaa gagggctgta ctcgggtagt 2460 gaaatgcctc ccaccggctg acgcaagttt acttgtctgg gctgttaatc agatgacaga 2520 tccattgatt gcattgatgt atgcggtcca agtgatgatt tttctcaagg acaaagatga 2580 gtcacctcga gaggatgttt tgctgctcca gaaggaccca tttgatggca acaggcatca 2640 gaaacccaac gtgacacttg ccatctcctt gaggaaagat ctaggagtca ttgctgcgtg 2700 cactgcccca accaacgaag taccaacata tgtggaggac tacactagta gctcaaaatc 2760 tgcaactgct ggctagtggc tatcaccgat gctcccggca tgacaactaa aatttcttac 2820 catcagtggc ttgggggcaa gccacatttc aagcggtggg gaa 2863 // ID hAT-N18_ZM repbase; DNA; GRAS; 536 BP. XX AC . XX DT 09-JUL-2008 (Rel. 13.07, Created) DT 09-JUL-2008 (Rel. 13.07, Last updated, Version 1) XX DE Non-autonomous hAT DNA transposon, consensus. XX KW hAT; DNA transposon; Transposable Element; hAT-N18_ZM. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-536 RA Bao W. and Jurka J.; RT "hAT-type DNA transposon from maize."; RL Repbase Reports 8(7), 704-704 (2008). XX DR [1] (Consensus) XX CC This sequence was derived from sequence data generated by The CC Maize Genome Sequencing Project. XX SQ Sequence 536 BP; 153 A; 101 C; 123 G; 158 T; 1 other; taggggtggg cgttcgggtt acccgaaawt ttcgggtcgg gtaattcggg tttttaaaat 60 ttcgggtttt gagaatcgat acccgaaatt acaacgggtt ttgcaatacc cgaaaattcg 120 ggtacccgga atttcgggtt cgggttcggg tattcccgaa ctacccgaac tattgtgtcg 180 gcttcataaa aacacataca ccctattaaa ttagtataaa aatatagttt gaataatgat 240 atacgtggac atataaaaca caagcaatct acaatcacaa gttatgcaca cttacacata 300 attatagatg tacaaattaa taattaagca tgacatgagt acatgacaca tgaaagttcg 360 ggtaattcgg gtatttcggg tacccgattg tgatacccga attacccgaa ataaattcgg 420 gttttgcaag ttgctacccg aaattcccga acaaaattcg ggtttcgggt atttcgggtt 480 cgggttcggg tattccgggt tcgggtttcg ggttacgggt tttttgccca gcccta 536 // ID BARE2_HV_I repbase; DNA; GRAS; 5292 BP. XX AC AY013246; XX DT 16-OCT-2002 (Rel. 7.09, Created) DT 16-OCT-2002 (Rel. 7.09, Last updated, Version 1) XX DE Hordeum vulgare copia-type retrotransposon, BARE2_HV_I, internal DE region. XX KW Copia; LTR Retrotransposon; Transposable Element; KW COPIA superfamily; internal region; TREP19; BARE-1-P2B; KW BARE2_HV_I. XX OS Hordeum vulgare OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Hordeum. XX RN [1] RA Dubcovsky J., Ramakrishna W., SanMiguel J.P., Busso S.C., Yan L., RA Shiloff A.B. and Bennetzen L.J.; RT "Comparative sequence analysis of colinear barley and rice RT bacterial artificial chromosomes."; RL Plant Physiol 125(3), 1342-1353 (2001). XX RN [2] RA Dubcovsky J.; RT "Direct submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AY013246; Positions 44998 50289. XX CC Internal region of copia-type BARE2 retrotransposon. XX SQ Sequence 5292 BP; 1529 A; 966 C; 1330 G; 1467 T; 0 other; gtggcatcat gcgctaggtt catgcgtaga tgtaatctcg agtagaacac aaagggtttt 60 gtggacggtg atgttcgatt ttctgccctc cttagtcttt tctcgattcg gcggtattgt 120 tggattgaag cggcccggac tgacattatt cgtacgctta cgaaagactg ctttcatcgc 180 tcgacatgca acctcgttgc ataaagatga ctggtgggtg tcggtttctt caactttagt 240 tgaattggtt ttgaccgagg cggtccttgg agaggttaaa taacaatttc cacatcttcg 300 ttgtggttct tgcgtaagta agatgtgatc tactagatac ccataggaga cacgtaaaac 360 ttgcaacaac aattagtgga cgtctaactt gtttttgcaa ggtatgcttg tgatatgata 420 tggccaatga cgtgatgtga tatattggat gtatgagatg atcatgttgt aatagttaat 480 atcgacttgc acgttgatgg aacggcaacc ggcaggagcc atagggttgt ctttaaacta 540 acgtttgtgt ttgcagatgt gtttactata ttgctaggac gtagctttag tagtaatagc 600 ataagtagca cgacaacccc gatggcgaca cgttgatgga gatcatgatg atggatatca 660 tggtgtggtg ccggtgacaa gaagatcgtg ccggtgcttt ggtgatggag atcaagaagc 720 acatgatgat ggccatatca tgtcagttat gaattgcatg tgatgatgat ccttttaatg 780 caccttattt tgcttagaat gacggtagca ttatgaggtg atctctcact taaatttcaa 840 gacgaaattg tgttctcccc gactgtgcac tgttgctaca gttcgtcgtt tcgagacacc 900 acgtgatgat cgggtgtgat agactcaacg ttcacataca acgggtgtaa aacagttgca 960 cacgcggaac actcacgtta agcttgacga gcctagcatg tacagacatg gcctcggaac 1020 acatgagacc gaaaggtcga gcatgaatca tatagttgat atgattagca tagggatgct 1080 taccactgaa actatcctca aatcacgtga tgatcggact tgagctagtg aaattggatc 1140 atgtaccact caaatgacta gagagatgta ctttttgagt gggagtttag caaataattt 1200 gattagttaa actctaatta tcttgaacat agtctaagtc cactttgaaa atatttgtgt 1260 tgtagatcaa tggctcacgc gaaagtcacc ctgaatttta atacgttcct agagaaagct 1320 aaattgaaag atgatggaag caactttgtc gactgggctc gtaatcttaa gttgctcctg 1380 caagctggga agaaggatta tgtccttaat gttgcgctag gagatgaacc acccgccgcg 1440 gctgaccaag atgctaagaa cgcttggtta gcatgcaagg aggactactc agtagttcaa 1500 tgtgcagtct tgtatggctt agagccggga cttcaacgtt gctttgagcg tcatggagca 1560 tatgagatgt tccaggagtt gaagtttatc tttcagaaga acgcccggat cgagaggtat 1620 gagacctccg gtaaattcta tggttgcaag atggaggaga attcgtctac cagtgaacat 1680 gtgctcaaaa tgtctgggta ctcaaaccgt ctagctgagc tggggattga actcccgcaa 1740 gaggctatca ctgacagaat tcttcaatca ctgccaccaa gctataagag ctttgtgttg 1800 aactataaca tgcaagggat gaacaagtca cccggtgagt tattcgcgat gctgaaagtc 1860 gcagagtcag aactccgtaa agagcatcaa gtgttgatgg tgaataaggc cactagtttc 1920 aagagaagcg gcaaaggaaa gaagggtaat tcaaagaaga tcggcaagcc tgttgccaat 1980 ccaacgaaga aacccaaagc tggacctaag cctgaaacga agtgttatta ttgcaagggt 2040 atgggtcact ggaagcgcaa ctgtccaagt atctggctgg taagaaggcg gccaaggaaa 2100 aatcaggtat atttgatata catgttattg atgtgtactt aaccaactct cgcagtagtg 2160 cctgggtatt cgataccggt tctgttgctc atatttgcaa ctcaaaacat gaactacgga 2220 ataagcgaag gctggcgaag gatgaagtga cgatgcgcgt gggaaatggt tccaaggttg 2280 atgcaatcgc cgtcggcaca gtttcacttc agttaccatc atgattagtt atgaacttaa 2340 ataaatgtta tttagtgcct acgttaagca tggacattat atctggatct tgtttattgt 2400 gagacggtta ctcgtttaaa tcagagaata atggttgttc tatttctatg agtaatatct 2460 tttatggtca tgcacccaat gtgagaggat tgttcatatt gaatcttgat agtgataata 2520 cacatataca taacattgag accaaaagag ttagagttaa caatgatagc gccatgtttt 2580 tatggcactg ccgcttaggt catattggtg taaagcgcat gaagaaactc cataccgatg 2640 gacttttgga gtcacttgat tttgattcac ttgacacgtg cgaaccatgc ctcatgggaa 2700 agatgactaa gactccgttc tccggaacaa tggagcgtgc aagtgacttg ttggaaatca 2760 tacataccga tgtgtgtggt ccgatgagtg cggaggcgcg cggcggatat cgttattttc 2820 tcaccttcat tgacgatttg agtagatatg gttatgtcta cttaatgaag cacaagtctg 2880 agacgtttga aaagttcaag caatttcaga gtgaagtcga aaatcatcgt aacaagaaga 2940 tcaagttcct acgatctgat catgggggtg aatatctgag tttcgagttt ggtgctcact 3000 taagacaatg tggaattgtt tcacagttaa caccgcttgg aacgccacag cgtaatggtg 3060 tgtccggacg tcgtaatcgt actttattag agatggtgtg atctatgatg tctcttacca 3120 atttgtcgtt atcgttttgg ggttatgcat tagagacagc tgcattcact ttaaataggg 3180 caccatcaaa atccgttgag acgacgccat acgaactgtg gtatggtaaa agaccaaagt 3240 tgtcgtttct taaagtttgg ggatgtgatg cttatgtcaa aaaacttcag cctgaaaagc 3300 tggaacccaa agcgaaaagg tgcgtcttca taggttaccc aaaagagaca gttgggtata 3360 ccttctatct caaatctgag ggcaaagtgt ttgttgctaa aaatggagct tttcttgaga 3420 aggagtttct ctcgaaataa ttgagtggga ggaagataga acttgatgag gttgtcgaac 3480 ctctaattcc tcttgatggt ggcgcaaggc gaggggaaac ccctgttgtt gcggcgctgg 3540 ttgaggaaca agttgatgat gatgatcatg aaacttcgga tcaagttact gtcggacctc 3600 gcaagtcgac aagataacgt actgctcctg agcggtacgg taaccctgtc ttaacgatta 3660 tgttgttgga caacaatgaa cctgcgaatt atgaagaagc aatggtgggc ccagattcca 3720 acaaatggct ggaggccatg aagtccgaga taggatccat gtacgggaac aaagtgtgga 3780 ctttagaagt actacctgaa ggccgcaagg ctatttagaa caaatggatc tataagaaga 3840 agacagccgc agacggtaat gtgaccgttt ataaatctcg acttgtggca aagggttttt 3900 cacaagttca aggaattgac tacgatgaga ctttctcacc ggtagcgatg cttaagcttg 3960 tctgaatcat gttagcaata gctgcctttt acgattatga aatctggcag atggatgtca 4020 aaacggtgtt ccttaatggt tttcttaagg aagagttgta tatgatgcaa cccgaaggtt 4080 ttgtcgatcc taagaatgct aacaaaatgt gcaagctcta acgatccatt tatggactgg 4140 tacacgcatc tcggagttgg aataagcgtt ttgatcaggt gatcaaagca tttgggttta 4200 tacaagtggt tggagaatct tgtatttaca agaaagttag tgggagctct gtggcatttc 4260 taatattata tgtggacgac atattgctga ttggaaacaa cgtggagctt ttggagagca 4320 taaaagttta cttgaataaa agtttctcta tgaaggacct aggagaagct gcttacattc 4380 taggcattaa gatctatagg gatagatcaa aacgcctgat aggactttca caaagcacat 4440 accttgataa agttttgagg aagttcaaaa tggatcagtc caagaaaggg ttcttgccag 4500 tgttacaagg tataaaattg agtaaggctc agtgccaagc aactgcggaa gatagaaaga 4560 caatgagttt cgtcccctat gcttcaaccg taggttctat catgtatgca atgttgtgca 4620 ctagaccaga cgtcagcttg gccataagta tggcatgcag gtttcagagt aatccaggag 4680 tggatcactg gacggcggtc aagaatattc tgaagtacgt gaaaaggact aaggaaatgt 4740 ttctcgtgta tggaggtcgc cgtaaaaggt tacgccgacg caagttttga caccgacccg 4800 gatgactcta agtctcaaac cggatacgta tttattctta atgggggtgc ggtaagctgg 4860 tgcagttcca agcagagcgt cgtagcagat tctagatgtg aagcggagta catggctgcc 4920 ttggaggccg caaaggaggg tgtgtggatg aagcagttca tgacggatct tggagttgtg 4980 tcaagtgcac tggatccatt gactctgtta tgtgacaaca ctcgtgcaat tgccttagca 5040 aaggaaccaa ggtttcacaa taagaccaga cacatcaaac gacgcttcaa cctcatccgc 5100 gactacgtcg aaggagagga cgtgaatatt tgcaaagtgc acacggtctg aatgtagcag 5160 acccgctgac taaacctctt ccacaggcaa aacatgatca acaccagaac tgtatgggtg 5220 ttcgatttat tacaatgtaa atcgcatggc gatgtgagga ctagattatt gactctagtg 5280 caagtgggag ac 5292 // ID En/Spm1n_AT repbase; DNA; GRAS; 3411 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE Nonautonomous En/Spm-like DNA transposon. XX KW nonautonomous DNA transposon; transposase; En/Spm superfamily; KW CACTA; TREP746; Mandrake; En/Spm1n_AT. XX OS Aegilops tauschii OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Aegilops. XX RN [1] RP 1-3411 RA Brooks A.S., Huang L., Gill S.B. and Fellers P.J.; RT "Analysis of 106 kb of contiguous DNA sequence from the D genome RT of wheat reveals high gene density and a complex arrangement of RT genes related to disease resistance."; RL Genome0-0 (2002). XX RN [2] RP 1-3411 RA Wicker T.; RT "Direct Submission."; RL Direct Submission to Repbase Update (from TREP) (JAN-2003).. XX SQ Sequence 3411 BP; 965 A; 686 C; 693 G; 1067 T; 0 other; tctcgctact agggaaaacc ttatatacag aactttagca gtagcgctgg gtaaaatggg 60 gcgctactgc tacttagcag tagcgtggtg caaaggaagg cactactgct atgaacatag 120 cagcagcgcg gctagggcaa agagcgctac tactaaaata ccccaccgtt gccgccaggc 180 taagtttagt agtagcgcct tcctatgaaa tgcgctactg ctagctagtt tagcaatagc 240 attttctccc aaacctcgct actgctaaac gcccgtttcc tcaatctccc gtctcactat 300 cgcggtcgtc gtcctcctcc tgccatcgcc cccatcgcca cattgctgcc atcggcgtcg 360 cagccatcct ccggcctcgg taagcctccc cttctcctct tcctcctccc tcctccctcc 420 tctagctacc cctcctcctc ccctcgtccc tcccctgctc ctccctcctc tagccgcccc 480 tccatcaaca acacctcctc cctccatagc ccgtcctccc tccacagccc ctactccctc 540 ccctcctcca tccacagccc ctcctccctc catagatata gttgatagta tagataggta 600 gaatgtacgt tttttcaata gtatagatag gtaggatttt gtagaatgta catagaattt 660 aagtggttaa tagaactagt ttatgtatag taagtgctta attgaattag taagaaaatt 720 aattattttt atttatagta agtgcttagt tgaactagtt gaattagtaa aaaaattaat 780 tatttttatt tatagtaagt gcttagttga actagttgaa ttaatagaac tagtttattt 840 ttagtaagaa aatttaggta tggaaaattt aattattttt atgtcattat tactttgtca 900 tcaaagaatg ctatatgaga tttgatgatc taaaattata ctctgtggaa tatgcaggct 960 ttttagagtc gtgtctcctt ggagtgatcg tcatccgagc tacctctact tcctctacac 1020 cagagtcggt gagctaaaag tccaccgcct ccttctccac tcctcggtgt gttgaataga 1080 gtagaactag ggtatttagt cggtgagctc atgtgcgaat gcttatgata attgattcag 1140 atggaattgc aagtttaagc atcattgtat gtgtatgaac atctttgtat cgcagggaaa 1200 atccgagtgg cctatgtttt gccgaagtgt tgattcattt ccgttccggc aaatttcagg 1260 cgctcgatat gtcctatttt accaaaggtc atgccggatt tttccgtgaa tttaagcatg 1320 acttgtgcta gaatatgtag gaaatatcga gtgccccgga tttgtgtgtt gagtttcctg 1380 gtagttgcct tcgatcgatt ttcaattaat gttttaacta tgaacatagg aaatgtctga 1440 cgacgaaaag gatttcggta tgtgcgaata ctgcaaagac gagcgcggcc tgtgcgatag 1500 acatttccta gttgatgata ggcgcttcag catcaagctg gatgagacct tcgaagtgga 1560 tacagtaagt cacaacgaca agtctttttt cgtaattaag aatgacttct gcttcttttg 1620 cttaaactta taattttaaa tttttactat tctactagcg tatcccttgc catgcaagaa 1680 tttttgtctt ggataagatt ggtttcagtc ctatgaaaac tatggaggta aagagagttc 1740 acttgaggac aaagcatggt tatactttcg atgcaaaatt atacaatgta gacacctaca 1800 cctattttga atgcaaaaat tggagagcac tatgcaaggc ttatgcattt gagcctgata 1860 tgcttatcac ctttgatatt cgtccggaag atgatattga aggtaatatc gaaatctggg 1920 tcgatgtgca gacgcctcca gttctaccat tatgtgagtt tctcaaccat atttatgtcc 1980 tcgatattgt ttattcaaaa atagttgaca actaatttct attgacaact tatttccatt 2040 caagcaaaca tgtccagcgc ttggtagaca tgacctacca ctgtcctggg gctgaactaa 2100 actgcgagga gataagtcat tatgtttcat ggcttgagga tcttgatgct gtcaagagaa 2160 attattttcc tgaacttgaa aatcttagta ctcaaaatgt gcgaccagca gtgttcgtat 2220 tgaactacgg tcacatctat ttaggaaaga tggtaagatc tttattattt gtcctcagtg 2280 gatcttttgc atacattatt ttttaagcta aacttcattt ctaagtatgt tactacgatg 2340 ttcttcaaca gggactcccg atgatagctg tgcctcattg gttactatta agtcgtgtct 2400 aaaggtcgca tggcaatggt tagcttacag ccaagacatc ctacatcgca catgagtgca 2460 ttcaggattt ctaaaatcga gcaagtctta atagtgaaag actagagcaa aattgtgaat 2520 gatcgcagag aagtaatagg gggcagcaat cagaaacgca acccacaatt aggagacagg 2580 ttcatctgca tgctccaata tgatgaatca ggactgctag acatgttcta tgctatttta 2640 cctaagagag agagcagcag gagtgattag ctagctacaa tgagtttgaa gatgaggatg 2700 tgctacacta tgactatgat gattaaatag gtagtgttgg tggtaatgac tgatgattat 2760 tattagctag tgttggtggt gattagatag ctacaccgtg actatgatga ttaaatagtg 2820 gtaatgacta tgatgattat tagctagtgt tgttggtgat gatatgatgc aagagttctt 2880 atattaatat gatgatgatg atgatgatga tgaaatgatg atgagttatt atatcatcgg 2940 gtgaaagaac cgtggattag tttcaagtgg atggattata agtgatcaag tcatggatta 3000 tcacgataat ccatgacttg atcacttaga atccatccac ttgataatcc atgagttgat 3060 cacttagaat ccatccactt gaaactaatc cgcggttctt tcacctagtg atttaataac 3120 ttattataat atgaaaacaa tctctaaatt gctactgtat gaaaacttga ataaaggtgt 3180 atgaatatga cataaaataa aaaagaaata gaatacagaa tagtaatatt agcgcgggca 3240 gtgagacacg ctactagtaa ttaccagtag cgcctgttgc gctacgcgct actactaagt 3300 tgatatagca gtagcgcgtg ttaacccacg ctactgctaa cctttagctg tagcgccgta 3360 gcagtagcgc ggttacccgc gctactgata ggcttttccc tagtagtgtc t 3411 // ID Copia2_HV_LTR repbase; DNA; GRAS; 170 BP. XX AC . XX DT 06-FEB-2003 (Rel. 8.01, Created) DT 06-FEB-2003 (Rel. 8.01, Last updated, Version 1) XX DE Copia-like LTR retrotransposon. XX KW Copia; LTR Retrotransposon; Transposable Element; KW endogenous retrovirus; COPIA superfamily; TREP1161; Bianca; KW Copia2_HV; Copia2_HV_LTR; Copia2_HV_I. XX OS Hordeum vulgare OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Hordeum. XX SQ Sequence 170 BP; 48 A; 38 C; 26 G; 58 T; 0 other; tgttaggaat taattaaatg tattaattaa tgggataatc cctgcgttgc cggttgcctt 60 gttttagcaa ccgttccttg taaaccgcct ctgtaacagg ggtataaata cccacatctt 120 caatcaatga aaacactgtt ccatcattct gtcactttca ctactttaca 170 // ID PREM2_ZM_LTR repbase; DNA; GRAS; 1427 BP. XX AC AF090447; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 11-JUL-2003 (Rel. 8.06, Last updated, Version 2) XX DE Zea mays copia-type retrotransposon PREM2_ZM_LTR, long terminal DE repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; KW Long terminal repeat; retrotransposon; target site duplication; KW COPIA superfamily; PREM2_ZM_LTR. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-1427 RA Song R., Llaca V. and Messing J.; RT "Direct submission."; RL Direct Submission to Genbank (04-SEP-1998). XX RN [2] RP 1-1427 RA Llaca V., Lou A., Young S. and Messing J.; RT "Direct submission."; RL Direct Submission to Genbank (10-NOV-1998). XX RN [3] RP 1-1427 RA Song R., Llaca V. and Messing J.; RT "Direct submission."; RL Direct Submission to Genbank (12-APR-2001). XX RN [4] RP 1-1427 RA Song R., Llaca V. and Messing J.; RT "Direct submission."; RL Direct Submission to Genbank (24-APR-2001). XX DR Genbank; AF090447; Positions 52001 50575. XX SQ Sequence 1427 BP; 334 A; 406 C; 366 G; 321 T; 0 other; tggactaact agtctgttct agtgtataag ttatacaggt gtcaaaggtt cacaacatag 60 ccaataaaat gaccaagtgt tgggttcaac aaaagggcaa agagccaacc gaaggccctc 120 tggtctgggc gcaccggaca caccaccgga cagtgtccgg tgcaccaggg gactccagct 180 cgaactcgcc accttcggaa atttccaggg gccctcgctc tataattcac cggactgtcc 240 ggtgtacacc ggacagtgtc cggtgcgcca tggagaggcg gcctcaggaa ctcttcagct 300 tcgggaaaag ccaacggctc gtccgctata attcaccgga catgtccggt gtgcaccgga 360 ctgtccggtg tgactccagt gcaacggcta tcccgcgcca acggctacct gcagagacat 420 taaatgcgcc gcagcgcgcg cagacgtcag gattgcccat actggcgcac cggacaatga 480 acaggagctg tccggtgcgc caccggacat caagggtggc ccacaagtca gaactccaac 540 ggtcagattc caacggtact gatgacgtgg caggggcacc ggacatgtcc ggtgtgcacc 600 ggactgtccg gtgcgccatc gagcagactg gctccccaac ggccacattt ggtggttggg 660 gctaaatacc ccaaccagct gtccggtgcg ccaccggaca tcaagggtgg cccacaagtc 720 agaactccaa cgttcagatt ccaacggtac tgatgacgtg gcaggggcac cggacatgtc 780 cggtgtgcac cggactgtcc ggtgcgccat cgagcagact ggctccccaa cggccacatt 840 tggtggttgg ggctataaat accccaacca ccccacattc attgccatcc aagttttcca 900 cttctcaacc acttacaaga gctagacatt caattctaga cacattcaaa gagatcaaat 960 cctctccaat tccacacaaa accctagtga ccagagagag tgatttgccg tgttcttttg 1020 agctcttgcg cttggatcgc attctttctt tctcttgtgc tcttgtgatc aacactcaat 1080 tgtaaccgag gcaagaggca ccaattgtgt ggtggccctt gcggggaagt tttgttcccg 1140 gttgattgag aagaaggaaa gctcactcgg tccgagggac cgtttgagag agggaagggt 1200 tgaaagagac ccggcctttg tggcctcctc aacggggagt aggtttgcaa gaaccgaacc 1260 tcggtaaaac aaatccacgt gtcactctcc ttatttgctt gcgatttgtt ttgcgccctc 1320 tcttgcggac tcatttatta ttactaacgc taaccccggc ttgtagttgt gattattttt 1380 gtaaatttca gtttcgccct attcaccccc cctctaggcg actatca 1427 // ID Gypsy49-ZM_I repbase; DNA; GRAS; 1953 BP. XX AC AC206838; XX DT 09-MAR-2008 (Rel. 13.03, Created) DT 09-MAR-2008 (Rel. 13.03, Last updated, Version 1) XX DE LTR retrotransposon from maize: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW internal portion; Gypsy49-ZM; Gypsy49-ZM_LTR; Gypsy49-ZM_I. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-1953 RA Kohany O. and Jurka J.; RT "LTR retrotransposons from maize."; RL Repbase Reports 8(3), 311-311 (2008). XX DR Genome; AC206838; Positions 94918 92966. XX CC 'CACTT' target site duplication CC LTRs are 96% similar to each other. CC This sequence was derived from sequence data generated by The CC Maize Genome Sequencing Project. XX FH Key Location/Qualifiers FT CDS 404..1951 FT /product="Gypsy49-ZM_I_1p" FT /translation="MEEEKVWMASYHLEDMAQLWYIQLQEDEGTPRWSRFK FT DLLHLRFGPPIRSAPLFELAECRRTRSVEEYQNRFRALLTRAGPLEEGQRV FT QLFTGSLLPPLSHAFLKGQPVLGACCRTNIVGFHITDFLRQCLKYPYHMTS FT IAWEKAEELKKEHCYIALDYMAELQIFKNNKEEADDKMRYWQLPWVPPPKE FT EPPSEEELARKAALKEKAGQRLRDMAAAKRSQKIVELEKQLSYLEELMEQL FT DEAEEEEATTILGSSRYLSQQEIRAAILKASQSLRKAKGESNGNDEKTDAS FT AVDKYPLVSVPDGTLTPEQLKEKKKQILLKTTTEGKLRAKQKRAEEEALQE FT KQEEKGRAENPELYLEKLQARYSELSDKFEQRKRQKVNGSQTNGNHSSSAG FT VGCGERLNAAQKERMRLLASAVFDRGKGEDTFGMREEDWLVYNKMSKDNDD FT DSNDDDESELVRISSKLQEIDPTFVSKSEVVQLTPEPPKVRPYRYPAAHKG FT FRALHPAFQLEDKLLFEEER" XX SQ Sequence 1953 BP; 563 A; 485 C; 499 G; 406 T; 0 other; acctgatatc acggtcacgc cgatcctact catccacctc cgccgacgcc gagtccactg 60 tcaccgctcc actcagccct accgcgccac cagaaagccc accaccctcc ccaccttcag 120 ccgcatcctc cagttcaccc atggccgaac catccaatgt cgactcgcca agatgatcga 180 gcaactcacg ggtttcgtcg ccacgctgca gtccgaggtc accgcgctga aacgcgacaa 240 ggagaagtcg ttgtcgacgg tcgggggcga tgttcctgac ggccagcacc accacgatcg 300 gccacccaaa ttttagaaga tcgattttcc ccgcttcgat ggcaagaccg atcccttgat 360 cttcgtcaat tgttgtgaat cctacttcca tcagcagcgc gtcatggagg aggagaaggt 420 ctggatggct tcataccatc ttgaagacat ggcacagctc tggtatatcc agctgcagga 480 ggacgagggc actcctcgat ggagtcgatt caaagatctc ctccacctgc gtttcgggcc 540 gcctatccgc tccgctccac tcttcgagct cgccgagtgc cgacgcacaa ggtccgttga 600 ggagtaccaa aaccgcttcc gagcgttgct gacccgcgcc ggtccattgg aggaggggca 660 gcgcgtccag ctcttcacgg gcagcctcct accgccactc agccacgcgt ttttgaaagg 720 acagcctgtg ttgggggctt gctgcagaac caatattgtt ggatttcaca ttactgattt 780 tctgaggcag tgtctaaaat atccctatca catgacaagt attgcatggg aaaaggctga 840 agagctgaag aaggagcatt gttatatagc tcttgattat atggcagagt tgcagatatt 900 taaaaacaat aaggaagaag ctgatgacaa aatgaggtat tggcaactac catgggtgcc 960 cccaccaaag gaagaaccac catctgagga agaacttgca aggaaagcag ctttgaagga 1020 aaaggctggt cagcgtttgc gagacatggc tgctgcaaag agatctcaga agatagtgga 1080 actagaaaaa caactttcct atctggagga actaatggaa caacttgatg aagctgagga 1140 agaagaagca acaactattc taggtagctc tagatatctt tcccagcagg aaataagagc 1200 tgccatttta aaagcatcac aatctttaag gaaagcaaaa ggggagtcca atggcaacga 1260 tgagaaaaca gatgcctcag cagttgataa gtatccactt gtatctgtcc ctgatgggac 1320 actgacgcca gaacagttaa aggaaaagaa gaaacaaatc ttacttaaaa ccacaacaga 1380 gggcaaattg cgcgctaagc agaaacgtgc tgaagaggaa gctttgcagg agaaacaaga 1440 agaaaagggg cgtgcggaga acccagagtt ataccttgaa aagcttcagg cccgatattc 1500 agaactttct gataaatttg agcagaggaa gcgacagaaa gttaatggta gtcagacaaa 1560 tgggaaccat agttcatctg caggtgtagg ctgtggagaa cgactaaatg cagctcagaa 1620 agaaaggatg cggctgcttg cctcagctgt ttttgatcgg ggcaaaggtg aggacacttt 1680 tggaatgaga gaagaggatt ggttagtgta caacaagatg agcaaagaca atgatgatga 1740 cagcaatgat gatgacgaat cggaacttgt tcgaatttca tcgaagctcc aggagattga 1800 tcctacattt gtgtccaaat ccgaagttgt tcaactgact ccggagccac ccaaagtccg 1860 gccatatcgg tatccggcgg cccacaaagg ctttcgcgcc ctgcacccgg cgttccagct 1920 cgaggacaag ctgctcttcg aggaggagag aga 1953 // ID Gypsy22-ZM_I repbase; DNA; GRAS; 5609 BP. XX AC . XX DT 24-SEP-2007 (Rel. 12.09, Created) DT 24-SEP-2007 (Rel. 12.09, Last updated, Version 1) XX DE LTR retrotransposon from maize: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW internal portion; Gypsy22-ZM_I. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-5609 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from maize."; RL Repbase Reports 7(9), 955-955 (2007). XX DR [1] (Consensus) XX CC Positions [2008-2463] - Reverse transcriptase CC Positions [3578-4069] - Integrase core CC LTRs are 93% similar to each other. XX FH Key Location/Qualifiers FT CDS 274..3417 FT /product="Gypsy30-ZM_I_1p" FT /translation="MSTEGLYRYLGTLAGLVERQARATGSNGQGQSSSTRG FT SSFDDFKKLGPPYFSGTSDPTEAEAWIMKIEKFFDVIDCSEEQKASYAAFM FT LDKEADHWWRMTKRLLEDQGPIVWSQFREAFYKKYFPDSVRRQKVGEFVRL FT EQGDLTVAQYEAKFTELSRFAPQLIATEEEKALKFQDGLKPYLKNKISILK FT LSVYSEVVDRALIAEKDNEELHQYREQQRKRNRNDGAHGNQAQKRSAPSRN FT QNKGKAAQNLDGICPTCGKKHGGRPCYRETGACFGCGKQGHMVRDCPESRK FT FVFGKPKEENKEDRQKPRAQGRVFAMTHRDAQATSDVVTGTLRIHTLFARA FT LIDPGSTHSFVSVSFAGLLGMPIDNMDFDLFVATPLGDFVVVNKILRDCCV FT MIGYREMTVDLVLLDLQDFDVILGMDWLASYHASVDCFGKRVTFSIPGQPD FT FSFEGKHVDKPLRMISALRASSLLKKGCQGFLAYVVNEENDLKLEDIPIVR FT DYPDVFPEDLPGLPPEREVEFTIDLAPGTAPISKAPYRMAPMELKELKIQL FT QELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVRNKYPLP FT RIDDLFDQLQGACVFSKIDLRSGYHQLRVRGEDVPKTAFRTRYGHYEFLVM FT PFGLTNAPAAFMDLMNRVFKPYLDQFVVVFIDDILVYSKSREEHERHLSIV FT LQTLRDKQLYAKLKKCEFWLDKVSFLGHVVTKDGISVDPGKVDVVSNWRRP FT NTVTEIRSFLGLAGYYRRFIEGFSKIALPLTRLTQKGVKFEWSDDCECSFQ FT ELKNRLVTAPILTIPSGSGGFVVYSDASHQGLGCVLMQHGKVVAYASRQLK FT PYERNYPTHDLELAAVVFALKIWRHFLFGETCEIFTDHKSLKYLFSQKELN FT MRQRRWIELLKDYDCIIQYHPGKANVVADALSRKSVGSLAAIRGCQRQLLE FT DLRSLQVHMRVLDSGALVANFRVQPDLVGRIKALQKNDLNLVQLMEEVKKG FT SKPDFVLSDDGILRFRTRLCVPNDGDLRRELLEGAFRGSSLF" FT CDS 3449..4681 FT /product="Gypsy30-ZM_I_2p" FT /translation="MYKDLRQNYWWSGMKRDIAQFVAQCLVCQQVKAEHQR FT PAGFLQPLSIPEWKWEHITMDFVTGLPRTLGGNNAIWVIVDRLTKSAHFLP FT MKVNFSMDRLASLYIKEIVRMHGVPVSIVSDRDPRFTSRFWHSLQKALGTK FT LSFSTAFHPQTDGQSERVIQVLEDLLRACALDLKGNWDDYLPLVEFAYNNS FT FQASIGMAPFEALYGRRCRSPICWDDVGEKKLLGPELVQLTVEKVSLIKER FT LKAAQSRQKSYADNRRRDLEFEVGDHVFLKVSPMKSIMRFGRKGKLSPRFV FT GPFEVLERVGTLAYKVALPPSLSKIHNVFHVSTLRKYIYDPSHVVELEPIQ FT ISEDLTYEEVPVQIVDVMDKVLRHAVVKLVKVQWSNHSIREATWELEEEMR FT EKHPQLFQDSGMSSLED" XX SQ Sequence 5609 BP; 1599 A; 794 C; 1390 G; 1821 T; 5 other; gagtggtatc agagcactag gttgtgatct tgatgggaac ttgtttagtt tacctttggg 60 aatagatgag tgacgcatta gtttaagttt caacttcatc tagtctgatt ccttttattc 120 cttacaattc tgatttgctt atttggcttc ttagtgacta atttagttat acctgttgct 180 ttataggaca ccatgccacc aaggagacct gcatcttccc aaaacagtca ggctaatgat 240 gatatacctc ctccasctga ggctttgccc cctatgagta ctgaagggct ttatagatat 300 ttagggactt tggctggctt ggttgagcgt caagctagag ctactggaag taatggtcaa 360 ggacaatcct catctactag gggtagctcc tttgacgact ttaagaagtt gggtccccct 420 tacttttctg gtacttcaga tccaacagag gcagaggctt ggattatgaa gatagagaaa 480 ttctttgatg tcattgattg ttctgaggag caaaaagcct cttatgcagc atttatgtta 540 gacaaagagg cagaccattg gtggcgcatg actaagaggc ttttggagga tcaggggcct 600 attgtttgga gtcagtttag ggaggctttt tataagaagt actttcctga cagtgttcga 660 cgacaaaagg tgggagagtt tgtccgtttg gaacaggggg atttgactgt ggcccagtat 720 gaggctaagt ttaccgaact atcacgtttt gccccacagt tgattgctac agaggaggaa 780 aaagcattaa agtttcagga tggactgaag ccttatttga agaataagat atcaattctg 840 aagcttagtg tttattcaga ggtggtagac agagccctta ttgcagagaa ggataatgaa 900 gagcttcacc agtataggga acaacaaagg aagaggaata gaaatgatgg tgctcatggt 960 aaccaagcac agaaaaggtc tgctccaagt agaaatcaga ataaaggaaa agcagcacaa 1020 aatttagatg ggatttgtcc tacttgtggc aagaagcatg ggggtaggcc atgctataga 1080 gagacaggag cttgctttgg ttgtggaaaa caaggacata tggttcggga ttgtccagag 1140 agtaggaagt ttgtatttgg gaagcctaag gaggagaata aagaggatag acagaagccc 1200 agggctcaag ggcgggtatt tgctatgact catagagatg ctcaggctac ttctgatgta 1260 gtgacaggta ctcttcgaat tcacacctta tttgctagag ccttaattga tcctggatca 1320 acacactctt ttgtttccgt atcttttgct ggtttgttgg gtatgccgat tgataacatg 1380 gactttgatt tatttgttgc tactcctttg ggagattttg ttgtggttaa taaaatactt 1440 agagattgtt gtgtgatgat tgggtataga gagatgacag ttgacttagt acttcttgac 1500 cttcaagatt ttgatgtgat tttggggatg gattggttag cttcatacca tgcatctgtt 1560 gattgttttg ggaaaagagt gacgtttagc attcctggtc agcctgattt tagttttgag 1620 gggaagcatg tggacaaacc actgcgtatg atctcagcct tgcgagctag ttctttgctc 1680 aagaaaggtt gtcaaggctt tttggcttat gttgtgaatg aggaaaatga tttaaagttg 1740 gaagacatac ccattgtaag ggactatcct gatgtctttc cagaggatct acctggcttg 1800 ccaccagaga gggaggtgga gttcaccatt gatttggcac cagggacagc tcctatctct 1860 aaggcccctt ataggatggc acctatggag cttaaggagt tgaagattca acttcaggag 1920 ttgttagata agggcttcat taggcctagt gtttcacctt ggggagctcc tgttttattt 1980 gtaaagaaga aggatggatc tatgagactc tgcattgatt atagagagtt gaataaggtg 2040 acggtgagga acaagtatcc ccttcctcgg attgatgatt tgtttgatca gcttcagggt 2100 gcttgtgtgt tctctaagat tgatcttcgg tctggttatc atcagttaag ggttagaggt 2160 gaagatgtac ccaagactgc ttttcgaact agatatgggc attatgagtt tttggttatg 2220 ccttttggtt tgactaatgc acctgctgct tttatggact taatgaatag ggtattcaag 2280 ccctatctag atcagtttgt ggtggttttt atagatgata ttttggtgta ctcaaagagt 2340 agggaggagc atgagcgcca tttgagtatt gtattacaga ctctcagaga taagcaattg 2400 tatgctaaac taaagaagtg tgagttctgg ttagacaaag tttctttcct tgggcatgtg 2460 gtgaccaagg atggcatctc agttgaccct ggaaaggtag atgttgtgtc aaattggagg 2520 agacctaata ctgtgactga gattcgaagt ttcttgggac tggctggtta ttataggcgg 2580 tttattgagg ggttctctaa gattgcccta cctctaacca ggttgactca gaaaggggtt 2640 aagtttgagt ggtctgatga ttgtgaatgt agtttccaag agttaaagaa cagattagtg 2700 acagctccta ttttgactat cccttcaggt tcaggagggt ttgtggtgta tagtgatgcc 2760 tctcatcagg gtttgggttg tgttcttatg caacatggga aagttgtagc ttatgcttct 2820 agacagttga agccttatga acgaaattat cctactcatg atttggagtt agctgcagtg 2880 gtttttgcac ttaagatctg gagacatttt ctttttggtg aaacttgtga gatattcaca 2940 gatcataaga gtttgaagta tttattttcc caaaaggagt tgaacatgag acagaggagg 3000 tggattgaac tacttaaaga ctatgactgc attattcagt atcacccagg gaaggcgaat 3060 gttgtggctg acgccttgag taggaaatct gttggttcct tagcagctat tagaggttgt 3120 cagaggcaat tattggaaga tttgaggagt ttacaagtcc atatgagagt tttggactcg 3180 ggagctcttg tggcgaactt tagagtacaa ccagacttag ttgggagaat taaggcccta 3240 caaaagaatg atttgaattt agtgcaactt atggaagagg ttaaaaaggg cagtaagcct 3300 gactttgttt tatcagatga tgggattttg aggtttagga ctagactttg tgtcccaaat 3360 gatggagact taaggagaga gcttttggag ggagctttta gaggaagctc attgttctag 3420 gcttgcgatc cacccaggag ggacaaagat gtacaaagat ttgagacaaa attattggtg 3480 gtcaggtatg aagcgagata ttgcacaatt tgtggctcag tgtttggtgt gtcaacaagt 3540 gaaagctgag catcaacgac cagcagggtt tttgcaacca ctttctattc ccgagtggaa 3600 atgggaacat attactatgg attttgtgac agggttacca aggaccttag ggggcaataa 3660 tgctatttgg gtgattgttg atcgattgac aaagtctgct cattttctgc ctatgaaagt 3720 caatttttct atggatcgtt tggcttctct ttatattaag gagattgtga gaatgcatgg 3780 tgtacctgtt tctatagtat ctgacagaga tcctcgtttc acttctagat tttggcatag 3840 tttacagaaa gcattaggta ctaagttgag ttttagtact gcttttcatc cgcaaactga 3900 tggtcaatca gagagggtaa ttcaggtctt ggaagatttg ttgagagctt gtgctttgga 3960 cctaaaaggt aattgggatg attatttgcc cttagtggag tttgcctata ataatagctt 4020 tcaagctagc attgggatgg caccttttga ggcattgtat ggtaggagat gtcgatctcc 4080 tatttgttgg gatgatgttg gagagaagaa acttttgggg cctgaacttg tgcagttgac 4140 tgttgaaaag gtctctttaa ttaaggaaag attaaaagca gcacaaagta gacagaagag 4200 ttatgctgat aatcgtagac gagatttgga gtttgaggtg ggtgatcatg ttttcttgaa 4260 agtttcacct atgaagtcta taatgagatt tggaagaaaa gggaaactca gtcctcgttt 4320 tgtgggacca tttgaggtat tagaaagagt aggcactttg gcttataaag tggccttgcc 4380 cccaagtcta tctaagattc ataatgtatt ccatgtttcg actttgagga aatatattta 4440 tgatccctct catgttgtgg agttggagcc tattcaaatt tctgaggact tgacctatga 4500 agaggtaccc gttcaaattg tggatgtgat ggataaggta ctacgacatg ctgttgtcaa 4560 gttggtaaag gtccagtgga gcaatcatag tatccgagag gccacttggg agttagaaga 4620 agagatgaga gaaaagcatc ctcaattatt tcaagactca ggtatgtcaa gtttagagga 4680 ctaaactttt gttaaggagg ggaggatgta acgcccaagc attttttttt aagggtaatt 4740 taggaaatta ttaataataa ttaaattaat taattaatta atttaataaa atggaagagg 4800 ggtaaaaatg taattttacg aataaatacc ctaggtataa attagaaatt ttattcttcc 4860 tgttcttttc tgaatagmgt tcctgttcgc agaaagttcc agagaacgta aggttggagt 4920 cagatttcag ggtttgaaga acagatctct ataggtaaga ttctaacccc tagattaata 4980 ttttagattc attagttaat ttcaaacaca ttagatatat tttttttgga aaaccccaaa 5040 tctagattag ggttagttta ttttttttta attcgtttta atatcaaaat agtgaaaatt 5100 taagattttg attttattgt tggaatttgg gagatcttaa gtttttagat gaaaaaaaaa 5160 aaaaaaaagg attccttgga agatttcgat tttagrttag ggttaattta tttttttttt 5220 aaaattaaat aaatatattg ttaattgtgg cttaagggat tagaaaaaaa aaaaaaaaaa 5280 acacgtgtgc actggttgca tgcgtgtggg aactgtgcat ccactttttg tagaattatr 5340 taaggatttc atggttgaaa tctagttggt ggattttcac atactctatt attagacttt 5400 gatggataca tgggtatgta atattaatag tagcaagact ccgtattatt agactttgat 5460 gggtaatgta ttatttaata aaaawagata tgtatggatg gtattggggt ggttaatata 5520 tatatatata tatatatcta ttattatatt agcaataatg gagaattgtt atgtatagat 5580 tatgtttggt aaaaaataaa acttgaaag 5609 // ID Gypsy1-SB_LTR repbase; DNA; GRAS; 2203 BP. XX AC AC169376; XX DT 20-SEP-2007 (Rel. 12.09, Created) DT 20-SEP-2007 (Rel. 12.09, Last updated, Version 1) XX DE LTR retrotransposon from sorghum: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy1-SB; KW Gypsy1-SB_LTR; Gypsy1-SB_I. XX OS Sorghum bicolor OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Sorghum. XX RN [1] RP 1-2203 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from sorghum."; RL Repbase Reports 7(9), 974-974 (2007). XX DR Genome; AC169376; Positions 53250 55452. XX SQ Sequence 2203 BP; 577 A; 429 C; 533 G; 664 T; 0 other; tgtaacaccc taggtgtcaa gcatgcactt agcctcaaca aagccatgca taagcattcc 60 atcaagcata agcatcatga gcatgacact cttgagcaaa gtatgatttt atgtgcttca 120 tttcatgtgt tttaaatatg ataaaaatat gatacttgct tctaaaattg tgaaaaattt 180 acagtagact ttatgattag ctagtagtct cctgtaattt ttctggaatt tattgatgaa 240 cagagttgca tgtgattttt aatgggctta ggaatgaata aagaaaacta taaatggttg 300 tatatatagg tggaatggaa tgagttaggt ttggtgtatc tttgaagcac catgtaggtt 360 gctgatgtca tttgaaaaat aattatagaa gagaatataa tagatgtttg attcaattgt 420 ttattctggg atgatgttga ctaccttgta atgagcatga tcaagtgcat tacctatgca 480 tcataacatg actcttttgg tactctctca tataagcatc cactcgggca tctcgcactc 540 cactcatgag catatatgca tcatacaggc tcgcaggaga acgaagtgag acccgaggaa 600 cccgaggagc ttcaggagca ggaacctccg gaagtacaag agcccggaga ggaactgcaa 660 gagtgcccgg atcaccgacc cagcacgttt gagaaaggca agccccggag cattctaagt 720 ctccctagtc tcgctaacct actaagtata ttacacttgt tctactatat tgcatataag 780 taataggagt tgcttgatac cgttgttgca tatgtattcc ttgttatccc tactcgttta 840 tccaccttgt cctatgtaga taggcgcgga gtctatgctt agcctgctta gtccggtaga 900 agtcgggtga ttccctgtca cctgcgagat ataggtggat acccgtttgt ttaagcaata 960 gttgcttggg gaaagaaata accgagtgtg gaatgtaatt ggagactggg cagggtctta 1020 tggtgggttg cccatagtgc ccctgcctgt gtcgattaag gaccgatcgt tgacggccct 1080 cttgtcatgt tgaacgcatg ccccacattt agctggaagg ataagtcgtt ccgaccgcga 1140 agcctgagca ctatccgggc cgggaatcgg cccgatgtac gcgctgtatt ggtgatggtt 1200 gaggagaacg acgagggcgc ggcgcgcaac cttggtatac cttggatacc tcggtcgccg 1260 gaacggtcct cgggtacggg cggtgcctgt cgaacccgcg aattggtcct ggatagtgca 1320 acacggtgac ctgtagctca cttgatcagt gagtgtggtt tgtgtgggga ataaactcgc 1380 cagctggtca gaaatcgatt cgaatcgcca tcgctcctgg atagtgagca cttgacatga 1440 gccctgtcct cgtagtaagg actatggaac acttgggtta taatgatgaa tggtttaaga 1500 agtgctatga tgaggttcta tcatagtctc acacttgttt gtaatagcac aagagcaaac 1560 ctagataata ggtaatcata ctgtcaactt gagctaatta aaagaagaaa gacttaggta 1620 agttacgtta gtgaaatact gcggttttgc aaagatgtcg tcagctaccc cactatatag 1680 ccttcatgat ccttgatgag tctttatttt aagttatgac gggtaagtct agctgagtac 1740 cttcttgtac tcagggttct attcccatgt tgttttgcag atggtcaaat gtattatggt 1800 tattgcatcc tctgtctgta cccagctatg ggtgatgact agaccaaggg cgatggtcac 1860 tccgtctctt cctttgcttt tgtgggaatg accgaactat ggcactgtac cagacttatc 1920 gtgtgtgttg tattttcgaa ttatgaagct tccgctactt gaagaacttg gtttgtaata 1980 actttaagca ctccgatgta ttttatgaat gttgtaatct ggatgtactt gtggatggcg 2040 accgctaaac ttattacgat cttggctgtt atgtgaagtg tggtttgaaa tccttcgaga 2100 tttcacggac taccgggatt atatgggctt aagcgtgata gttcgactac gcaaatggtc 2160 actatcaggc ttaatctctt ataatttggt cggttctgtt aca 2203 // ID Gypsy3-SB_LTR repbase; DNA; GRAS; 703 BP. XX AC AC120496; XX DT 20-SEP-2007 (Rel. 12.09, Created) DT 20-SEP-2007 (Rel. 12.09, Last updated, Version 1) XX DE LTR retrotransposon from sorghum: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy3-SB; KW Gypsy3-SB_LTR; Gypsy3-SB_I. XX OS Sorghum bicolor OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Sorghum. XX RN [1] RP 1-703 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from sorghum."; RL Repbase Reports 7(9), 978-978 (2007). XX DR Genome; AC120496; Positions 46780 46078. XX SQ Sequence 703 BP; 169 A; 190 C; 210 G; 134 T; 0 other; tgttggggaa cagctgcatc cttccccctg gtagcgtcga aggttatcct tcacccgagg 60 aacctccgac gcctgaagcg tcgaaggata tccttcactg gaaaaatact aatgttgacg 120 actcgtctgg tcgtgctaag tgtgcaggga ctgaggcacc ggcggaggcc cacaggcaag 180 gaaaggggga acctccgacc ctcccgggtc cgaggatggc gagagaacgc ggccaggccg 240 agggacctcc gactcgacca ggctaagggg gaactcccgg ggtggccggg tcaagcaacc 300 tccggcccag ccaggctgag gaacctccga caccgaagcg tcggaggatc cgcgattggg 360 cggaggatcc aagcctccga cctgctgaag ccccagacag aggataaacg aagggcttgc 420 aatgtgaaat tacgcaggtg acttagggtc agtagactgt gatgtaagaa tatgctggaa 480 tattccccca ccgtcacggg gtatttatgt aaatgtcgtt aggtcggttt ccaggcccta 540 tataaggggc gcgatgccgt cattaataaa aaaaagagag ggcattcact gcattcacct 600 actgttgagc ccactatccg ttactgctca ggcctctcac agcaccgagt gagaaggttc 660 ccgatctact gtactgctgg gacgtgcgga gagcattttc cca 703 // ID FATIMA1_TM_I repbase; DNA; GRAS; 3638 BP. XX AC AF326781; XX DT 16-OCT-2002 (Rel. 7.09, Created) DT 16-AUG-2004 (Rel. 9.07, Last updated, Version 2) XX DE Triticum monococcum gypsy-type retrotransposon, FATIMA1_TM_I, DE internal region. XX KW Gypsy; LTR Retrotransposon; Transposable Element; FATIMA1_TM_I; KW GYPSY superfamily; TREP252; internal region. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RA Wicker T., Stein N., Albar L., Feuillet C., Schlagenhauf E. RA and Keller B.; RT "Analysis of a contiguous 211 kb sequence in diploid wheat RT (Triticum monococcum L.) reveals multiple mechanisms of genome RT evolution."; RL Plant J 26(3), 307-316 (2001). XX RN [2] RA Dubcovsky J.; RT "Direct submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AF326781; Positions 141955 145592. XX SQ Sequence 3638 BP; 999 A; 1075 C; 913 G; 651 T; 0 other; atggctcctt cgatcatcaa caacgatgca gtccagggtg agacttttct ccccggacag 60 atcttcgtct tcggcggctt cgcactgcgg gccaattcgc ttggccacct tgagcagatc 120 gaaagctacg cccctggcca tcaggtcagg tttggaagcc taaactatac ggctgacatc 180 cgcggggact tgatcttcga cggattcgag ccacagccaa gcgcgccgca ctgtctcgat 240 gggcatgata tagctctgcc gccgaacagc gctttggagg ccgcacacac accggttccg 300 accattgatt cggagcctac tgcgccgatc gaggatcagc ggttggacgt tgcctcaggg 360 gctgcgatct cagaggcgat cgagccgaac tcgaaccccg cactccgcat ggcccgtgac 420 tccgaggagc cggattcctc tccgaactcc gagccccccg cgcccctgcc gatcgaatcc 480 gattgggcgc cgataatgga gttcaccgcc gtggacatct ttcagcactc gcccttcggc 540 gacatcctga attctctaaa gtctctctct ttatcaggag agccctagcc ggactacggt 600 cagcaaggtt gggatacgga cgatgaagaa attcaaaacc cacccaccac ccacttcgta 660 gccactgtcg acgacttaac cgacatgctt gacttcgact ccgaagacat cgacggtatg 720 gacgacgatg caggagacga acaagaacca gcacatgtag ggcgctggaa ggccacctcg 780 tcatatgaca tatatatggt ggacactcca aaggatggag acggcgatgg aatagcgggg 840 gacgatacct ctaagaaaca gcccaagcgc cggcgtcagc ggcgccgctc taaatcccgc 900 caaaggaaaa acggtgattc cggcacggga gataatacta ctccggatag caccgaagaa 960 caccccctcc agcaagagtc agcacaggag gacagagaag ccagccctca cgagagggtg 1020 gcggacaaag aggttgagga cgataatcat atgcctccct ccgaagacga ggcaagcctc 1080 gacgacgacg agttcgtcgt gccagagcat ctcgccgaac aagagcgttt taaacgcagg 1140 cttatggcca cggcaagcag cctcaagaaa aagcagcaac agcttagagc tgatcaggat 1200 ttgctagctg atagatggac tgaagtcctt gcggccgaag agtatgaact cgaacgcccc 1260 tccaagagtt acccaaagca caggctgcta ccccgactag aggaggaagc acctacatca 1320 ccagcgcatg acatggccga tcggccacct cgtggctgcg acagagaggc ctctcggccc 1380 tccactcaag ccatgccccg gcaccgcgtc aagcatacta aggcacggga aaatgcgccc 1440 gacctgcgcg acatactgga ggacaaggca aggcaaacaa gatcgatcta tggatcgcgc 1500 aggcacccca cggcacgtga cggtgaccgt cactccggat gcaatgaatc cagccgggcc 1560 gaactcaaca gacaaagctc cttcaagctg cgtcgtgata tagcccaata cagaggcgcc 1620 gcacacccac tatgcttcac agatgaagta atggatcata aaatccctga cggtttcaaa 1680 cccataaaca tcaaatcata tgatggcaca acagatcctg cggtatggat cgaggattat 1740 ctccttcata tccacatggc ccgcggtgat gatctacacg ccatcaaata cctcccactc 1800 aaacttaagg gaccggcccg ggattggctt aacagcttgc cagtagactc aatcggttct 1860 tgggaggacc tggaagccgc attccttgac aacttccagg gcacttatgt gcgaccaccg 1920 gacgccgatg acctaagcca cataattcag cagccagagg aatcggccag gcaattctgg 1980 acacggttcc taacaaagaa aaaccagata gtcgactgtc cggacgcaaa ggccttagcg 2040 gccttcaagc ataatatccg tgatgagtgg cttgcccggc acctgggaca ggaaaagccg 2100 aaatctatcg caaccctcac gacactcatg acccgctttt gcgcgggaga agacagctgg 2160 ctagctcgca gcaacaactt aaccaagaac cctggtaatt cgaataccaa ggacaaaagt 2220 gacaggtcgc gtcggaacaa acaaaagccc cgcattaaca gcgacagcaa tgaggatacg 2280 acagttaatg ccagattccg aggctacaaa cccagtcaac ggaaaaggcc attcaaaaga 2340 aatactcagg gcccgtccag tttggaccga atactcgacc gcttgtgcca gatacatggc 2400 aaccccgaaa agccagccaa tcacaccaac agggattgtc aggtgttcaa gcaggcaggc 2460 aagttaagag tcgaaaacaa agacaagggg ctgcatagcg acgacgagga ggagcccagg 2520 ccgccgaaca acaatggaca aaagggattt cccccgcaag tgcggacggt gaacatgata 2580 tacgcaaccc acatccccaa gagggagcag aagcgtgcgt tacgggacgt atatgcgatg 2640 gagccagtcg ccccaaagtt caacccatgg tcctcctgcc cgatcacctt tgatcgaagg 2700 gaccacccca ctagcatccg tcacggtggc ttcgccgcat tggttctcga cccaatcatt 2760 gacggatttc atctcacaag agtcctcatg gacagcggca cagcctgaac ctgctttact 2820 aggatacagt gcaaaaaata ggcatagatc cctcgaggat caagcccacc aaaatgacct 2880 ttaaaggtgt cataccaggt gtagaagcca actatacagg ctcagttaca ttggaagtgg 2940 tcttcggatc tccggataac ttccgaagcg aggagttaat cttcgacata gtcccgttcc 3000 gtagtggcta tcacgcactg ctcgggcgaa ccgcattcgc aaaattcaac gcggtaccgc 3060 actatgcata cctcaagatc aagatgccag gccctagagg agtaatcacg gtcaatggga 3120 acactgaatg ctccctccga atggaggagc acacggcagc gctcgcagca gaagtacaaa 3180 gcagcctctc taggcagttc tccagttcgg ccttcaaaaa gccggacact atcaagcgcg 3240 cccggagtac cccacaacaa gaccgcctgg catgttctga gctagcgtag caatgcggcc 3300 ccaaccctag ccctcgcgat atagcgaaac cagtgcttca catacataac tacgctcttg 3360 aaataccatg ggcacagggg aaggggcact atcacggcac gcccgaaata cggcttaaac 3420 cgcaccaggg gctgccggat tctttttttt tcttttactc tcaggactcc atacttcgga 3480 cgacccgttc ggcaattcaa ctgccacaca aacgatgcaa gacccaggaa agcagacaag 3540 ccacgccgca ttatggaact cccaggtggt ctctattgcg agcagtatac ctatttttta 3600 atacaattcc gcggcctgcc cctggccaag acatgtaa 3638 // ID En/Spm2_TM repbase; DNA; GRAS; 12631 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE En/Spm-like DNA transposon. XX KW DNA transposon; transposase; En/Spm superfamily; CACTA; Caspar; KW TREP774; En/Spm2_TM. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RP 1-12631 RA Wicker T., Yahiaoui N., Guyot R., Schlagenhauf E., Liu D.Z., RA Dubcovsky J. and Keller B.; RT "Dynamic genome equilibrium at orthologous LMW glutenin loci of RT the A and Am genomes of wheat."; RL Unpublished.. XX RN [2] RP 1-12631 RA Wicker T.; RT "Direct Submission."; RL Direct Submission to Repbase Update (from TREP) (JAN-2003).. XX SQ Sequence 12631 BP; 3701 A; 2798 C; 2996 G; 3136 T; 0 other; cactagtaga aaacagggct ttggtccagg tcgggtcagc ccattagtcc cggttcagtc 60 cagaaccggg accaatgtgg acattggttc cggttcgtga gcccaggggc ccggccaggc 120 cacgtgggcc attggtcccg gttcatctgg accttttggt cccggttggt gggatgaacc 180 gggaccaatg ggcctcgctc ctggcccacc accattggtc ccgattcgtg gcttgaaccg 240 ggaccaaagg ctccccttta gtcccggctc atgtcaccga ccaggaccaa tgaggtgcct 300 atatataccc ctcgcacgcc agcagagcac cccagtgctc tgtttttctc tggccgaggg 360 ggagagggct ttgtggtgct ccagctcacc tcctatgcac atgaggtgtt cgatggaatg 420 cccgagccac actacttaag ttttctcctc tcgaagctcg acctccaagc tccattttcc 480 tcgagatttg tctagattta gcggtccgtc acgccccgtc cgcgtcttca ccgccatcga 540 tcacccgcgc cgatctcatc accgacacca ctgtggtgag cctcttgttc ttatcttctt 600 tctgaaagga aaaatattct tacttgtatg tttagataga tacttgtatc attttcttac 660 atttattatt gcatcttata tagtgcgatg gttttggtat ccgcccccgt cggccctcgt 720 cctgtctatg attcagatat ggtatgtata ttatctttat aactattggt tcatttattg 780 tttatgaaaa ttatgccgac caacgtgaca tagattttat ttatctagga tgtatgtgaa 840 tcggaaatgc caaccgaccc tattgtcgag aggttaaatt tagttgaaga agaaaacaat 900 ttgttgaagg aaaaaataaa aaaaaattga ggagaagatg atattggagt tgcatgttgc 960 ggatgtcgtc gatgatcaca agatcaagat ggatgcaacg cgcttgaaga ttagaaagat 1020 taggaaatat gccattcata ccaaggcttg gtatcattat gccgttggat caattgttac 1080 gttggttgcg attatgatcg catttttttc gttgttagat gagaactatg tatgcacttt 1140 ggttttaatg tgatgatgaa cttctattaa tttggacact tgattatata taatgcacgc 1200 agatgaaccg gtaatggatg tacagtgaca gacacacccg cgagtccttt aagggcgtgc 1260 atgagtttct cgatgcggct gaggcaaaca agcagaatgg ttttatgtgt tgtccatgca 1320 ctgaatgtgg gaatacgagg tcttactcta accggaaaaa tcgttcactc ccacgtactt 1380 tacaagggtt tcatgccaca ctatgatgtt tggatgaggc acggagaaat aggggttatg 1440 atggaagacg gcaaagaaag aagactacga tgacaactat gtgtcccctg aatacggtga 1500 tgctgcaacg gggggagctg gtgaagatca agaggaacca gacgatgtgc ccaatgatgc 1560 tgcaacgggt gaagctgctg aagatcaaga ggaaccagac gatgtgcccg atgatgatga 1620 tctccgtcgg gtaattgtcg atgcaaggac gcaatgcgaa agtcaaaagg agaagctgaa 1680 gttcgatcgc atgttagagg atcacaaaaa agggttatac cccaattgcg aagatggcaa 1740 cacaaagctc ggtaccgtac tggaattgct gcagtggaag gcagagaatg ctgtggctaa 1800 caaaggattt gagaagctac tgaaaatatt gaagaagaag cttccaaagg ataacgaatt 1860 gcccgacagt acatacgcag caaagaaggt cgtatgccct ctaggattgg aggtggagaa 1920 gatacatgca tgccctaatg actgcatcct ctaccgcggt gcatacaagg atttgaacgc 1980 atgcccggta tgcggtgcat tgcggtataa gatcagacga catgaccctg gtgatgttga 2040 cgacaagccc ctcaggaaga gggttcctgc gaaggtgatg tggtatgctc ctataatacc 2100 acggttgaaa cgtctgttca gaaacgaaga gcatgccaag ttgatgcgat ggcatagtga 2160 gaaccgaaag aaagatggga agttgagagc acccgctgac gggtcgcagt ggagaaaaat 2220 cgagagaaag tactgggatg agtttgcaaa ggacccaagg aatgtatggt ttgctttaag 2280 cacggatggc attaaacctt tcggagagca gagcagcaat cacaacacct gggcccgtga 2340 ctctatgtat ggataaccct cctccctgga tgtgcattga aacggaagtt cattatgatg 2400 ccagttctca tccaaggccc taagcaaccc ggcaacgaaa ttgatgtgta cctaaggcca 2460 ttaggtttca agaactttta ccacctgtgg aaatgaaaat ggtggacgta cgggggaatg 2520 accacagaca agaggaattc aaccttaagg cgttgttgtt cgtgaccatc aatgattggc 2580 ccgctctcag taacctttca ggacagacaa acaaaggata ccacgcatgc acgcactgtt 2640 tagatgacac tgaaagtata tacctggaca aatgcaggaa gaatgtgtac ctgggccatc 2700 gtcgatttct gccgaccaac catcaatgtt gaaagaaagc caagcatttc aaaggcgagg 2760 cagatcacca gaagaagccc gccatgcgca ccggtgatca cgtgcttgct atggtcaatg 2820 atttacacta cgtaatcttt tgaaagggtc ccggtggact agctgttccg aatgacgctg 2880 agggacacgc acccatgtgg aagaagaaat ctatattttt ggacctaccc tactggaaag 2940 acctagaggt acgctcctca atcgacgtga tgcacgtgac gaagaacctt tgcatgaacc 3000 tgctaggctt cttgggcgtg tatgggaaga caaaagatac acctgaggca cgggaggacc 3060 tgcaacattt gcacgaaaaa gacggcatgc ctccgaagca gtatgaaggt cctgccagct 3120 atgctcttac gaaagaagag aaagaaatct tctttgaatg cctgctcagt atgaaggtca 3180 cgactggctt ctcgtcgaat ataaagggaa taataaatat gctagagaaa aagtttcaga 3240 acctaaagtc tcatgactgc cacgtgatta tgacgcaact gcttccggtt gcattgaggg 3300 ggcttctacc tgaaaacgtc cgattagcca ttgtgaagct atgtgcattc ctcaatgcaa 3360 tctctcataa ggtgatcgat ccagaaatcg taccaaggct aaggagtgat gtggcgcaat 3420 gtcttgtcag tttcgagctg gtgttcccac catccttctt caatatcatg acgcacgtcc 3480 tagttcatct agtcgacgag attgtcatcc tcgggaccgt atttgtacac aatatgttcc 3540 cctttgagag gttcatggga gtcctaaaga aatatgtctg taaccgcgct aggccagaag 3600 gaagcatctc catgggccat caaacagagg atgttatcgg gttttgtgtt gacttcattc 3660 ctggccttaa gaagataggt ctccctaaat cacggtatga ggggagactg actggaaaag 3720 gcactcttgg aagagactca ataatatgca gggacggata ttcttggtct caagcacact 3780 acacagttct acagaactct accttagtga ccccgtatgt cgatgaacac aagaacagtc 3840 tgcgctccaa acacccagag cagtgcgacg actggattac atgtgaacac attaggactt 3900 tcagcagttg gttggaaaca cgtctcaaag gtgacaacac tgtttgtgat gagttgtact 3960 tgttgtccag gggaccatct ttgactgtat tgacttacaa aggatacgag ataaatggga 4020 atacatttta cacgatctcc caagatcaaa agagcaccaa ccaaaacagc ggtgtccgct 4080 ttgatgcagc aaccgagagc ggaaaggaca catattatgg ttacatagtg gacatatggg 4140 aacttgacta cggacctgat tttaaggtcc ctttgtttaa gtgcaaatgg gtcaatctgt 4200 taggcggcgg ggcacaggta gacccacagt acggaatgac aatagtggat ctgaaaaatc 4260 ttgggtacac tgacaaaccg ttcgtcctag ccaatgatgt ggcacaggtt atctatgtga 4320 aggacatgtc taccaaaccg agaaaaagaa aagataagga agagaataca tcatacgatg 4380 agccaaagcg ccacatagtt ctttcaggaa aaagggacat cttgggagtg gatggcaaga 4440 cagacatgtc tgaagattat gaaaagtttc atgaaattcc tcccttcaat gtcaaggctg 4500 acccaagcat cctgataaac aatgaagatt atgcatggtt acggcgcaat aagcaaatga 4560 cacaagcgaa gaaaaagtga agactttctc ctgcaactat tatgatgata ccatgccaac 4620 tttgtaacac acgaacatgc taccattgtc ccaactttca actttttcag agttcatttg 4680 aaagtgattg tccattttgt acacgaagtg catcaagttt tctctataag cgcatctatt 4740 ctcatttttt tagtaagtta atcacaaact tgtgattcaa acaattttca aagaattcaa 4800 attttaacta ttcaaattcg aaaactaatg gcactaacag aaagtttata atttttctaa 4860 aactaatggc actaacaaaa agtttatgat tttgctaacc taaaagcaaa caacattaaa 4920 aattaaagca aaaaaacaaa ataaaataaa taatgcaaaa aacaaatcaa aaaacaagaa 4980 aaaactattt ttatagtaaa gttaatcaca aaataaaata aataaagcaa caaataaaac 5040 taaaaaaact aaaaaattgt tttcaaattt gaaaactaat cgcactaata gaaagtttat 5100 aatttttcta aaactaatgg cactaacaaa agtttataat tttgctaacc taaaagcaaa 5160 cagaattaaa aattaaagca aaaaacaaaa gaaaataaat aatgcaaaaa acaactcaaa 5220 aaaacaggaa aaactatttt tatagtaaag ttaatcacaa aaaaaaagca acaaagaaaa 5280 taaaaaaaac taaaaaagtg ttttcaaatt tgaaaaataa tggcattaac aaaaagttta 5340 taatttctaa aactaaaagc ataaagaatt aaaaaataaa gcaaaaaaca aaagaaaaat 5400 aaataaagca acaaaaaaac aaaaaaatcc acctactggg ccaccacggc ctgaatacga 5460 ctagaaaccc taccatgggc caggattcag gcccgcagca ggcccagtag gcccacaggc 5520 attgcagtga cagattaggc ccgaaagcct gcagttgaga ggagctcggg agggtgggcg 5580 caacagcgct tataaaccac tcccgatccc tctcaaattg cgaggtggga ctaaactttt 5640 gggcgcgggg cagcacaagg ccattggtcc cggttggtgg caccaaccgg gactaaaggt 5700 ggcattggtc ccggttggtc ccacgaacag ggaccaatac tctgtgtata taagcaggac 5760 ttaggaaatt ttcagtttct catcgaccat tggcccccga cgccgccagg ctgcccgtgc 5820 tcgccgtcgc cgtcgccccg cgcccctgcc ccatgcacgc catagccgcc cgctcatcgt 5880 cgccgtcgcc atgcacctgc catgtcccgc cccagcgcgc cggcgccatc gccacccccg 5940 ccgtcgcctc gagctcccct actcgcgcgc gccgctccga gccccctgcc acggaatggc 6000 cgtcgccgcc cgcccctacc ccgatgcatg ccgccccggc ctgcccctgt cgccatcgcc 6060 cgcgccccta ccccgacgcg cgccggcccg gcccgccatc gcatgcgccc ctgcccgcct 6120 cctcagcttg gtccggccgc cggtgccctc cctttgcaat tttttttcat atatatgctt 6180 gttctatata tatatatgct tgttttttat atatacatat gcttgtctta tatatatata 6240 atgatttttt tatagaatgt gatgtttttt catagatgat cacatatatg atgtatgcac 6300 gaatgtggat gaaatatgat gtttttttgt tcatagaaca tgatgttttt taattcacat 6360 atttttttgt tcatgagaga ggcggggacg ttgagggatc atagatgtat ttttcagaat 6420 tttctatcat gcatagacgg attttatacc acgggagcac cccctctcta tcgttgcaaa 6480 atttgctaag tgatattaag aaggaaggaa aagaagtata ggaaagaaag aaaataagaa 6540 gaggaaagaa agaagaagag gagaggaaga agaggagaaa taaataagaa gaagaaaaaa 6600 gaagaaaggg aagaggagaa gaagaaagga atagtggaga agaagagaaa atagaatata 6660 ttctattttt tcttcttctc cactattcct ttctacttct cctctttttc ttcttctttt 6720 ttttcttcga tcttctcctc tagctattcc tttcttcttc tcctctttct tcttcttctt 6780 cttcttcttc ttcttcttct tcttcttctt aattttaatc gggaacgagg gtgtcgagga 6840 tcgccgaggg gtcgagggtt gggaactagg gtagagggtc gagggtcgtt agggggtcaa 6900 gggtcgaggg tttcaggttc gagggtttcg cgacccctcg gcgatcctct cgaacatgag 6960 aggaagaaga ggatcgccga ggggtcgagg gttccagggt cgtcgatggt tcgaggggtc 7020 gaggatcgcc gaggggtcga gagagagatt tcctagtgtc aaagtattga agaaattcat 7080 ggcttcatca ttagcaggaa gtaaccaggg catgacgaag tcctccaaag ttgttttgga 7140 atggtgtccc ggataggata attttccttt ttgtatgaat tttagcaaag gccttccaaa 7200 taacgatatt tggaaggttc ttgctgaact ttgtaccaaa aagcgaatta tcctatctag 7260 gactccgttc caaaataact ttggagagct tcgtaccatc atgcacctgt tactttcgcc 7320 taatgatgaa gacatggttt tgttgcatcc tttgacggta ggcaccctct cgacccctcg 7380 gtgatcctct cgaacatgag aggaagaaga ggatcgccga gggttcgagg gttccatggt 7440 cgtcgagggt tcgaggggtc gaggatcgcc gaggggtcga gagagataat tccgagtgtc 7500 aaagtatcga agaaatccat ggcttcatca ttagacgaaa gtaaccaggg catgacgaag 7560 tcttccaaag ttattttggg atagtgtccc ggataggata atttgccttt ttgtatgaat 7620 ttcagcagag gccttccaaa taacgatatt tggaaggttc ttgctgaact ttctaccaaa 7680 aagcgaatta tcctatctag gactccgtta caaaataaat ttggagagct ttgtaccatc 7740 atgcacctgt tactttcgcc taatgatgaa gacatggttt tgttgaatcc tttgacacta 7800 ggcaacctcc cgacccctcg gcgatcctct cgaacatgag aggaagaaga ggataaaaaa 7860 agaagaggaa caagaaaaaa aagagtagaa gaaagaatag aggagttctt cgacgaacat 7920 agatgtagtg tcatcgttgt cgatatatac cccctcccga tagctttaac atgtgggggg 7980 gtcgatatta ccctctcctt gaagcgttgt cgaggccacc ccaaaccctt gaagcgttgt 8040 cgaggccacc ccaaacccta cagaagcagc gtcgaggcca ctaattaata tatatatgat 8100 tccttactat gattaggtag ctagttctac gtttgccact aatatatcca tctgtcatgt 8160 ttgaataata attgtcatgt tgtaaatatt tgtagaaact atggacatcg cccgagacga 8220 agcaaaagaa gcgttgttga gggacataat cgcataagga agtgatgccg tctcgttgtt 8280 tctcaacgac accgatggtc tggaaggaga gggtgaagaa gctggctacg gtgacctaat 8340 gccggtgcaa gaagaagaac atgaggacgg ctccggtgac ccaatgccgg tgcaagaagg 8400 agaccgtgat gacggctccg gtgaccgaac cgagtccggc caggtatata tattagttaa 8460 gcctgtgctg actagctgat tgatgcattc attgttttgg tatgtacaca tgttaattaa 8520 gtctttgttc ttttttctag ccccccggat cgagcacaac ttcggtaaag agacgaggcc 8580 cgaagaaaaa gttgaactcg gatgaaaagt ttgagatcat agcaattgcg cccgatggcc 8640 gaccgattga acccattcga acaaagaacg catttgttgc tcagtgcggg gttctggtta 8700 gggacaagat ccccataagc atccagcaat agtttaagct agctacagaa gaccctgagg 8760 tgtcttatgt caatgatatg caaaaaaatg atctttggac tgagctgaag tcaaatttca 8820 ccctaccgcc agaggataat ccagagaacc tagttaaaga gaaattaatc aagtcttttg 8880 ctcttaagag gatggcagaa ctatccagga ggtggaagaa agagatgaat aagtttgtcg 8940 aaaataatga gacaccagaa ttcaagggct gatatgagaa gatcagagat cactagcctg 9000 catttgtggc ccacaagaca tcggaaaaga gtaagaatat gtcggcgaca aacaagcaaa 9060 aaggtgtgaa gaagaagctt caccatcgca aggggtcagg tggctacctc gtagcccgac 9120 ctaagtgggc caagactgag aatgatatgg ttgataaagg gatcgaacca gagacaatta 9180 gctggccaga ccgttgccgg acttggttct ttggggctgg cggaaccttg gaccctgtaa 9240 cagggaagtg catttggacg aacgatcaaa tggacatacc agtaaggaag cttaagcagt 9300 atatcgaagc agcgcagcaa gggaagttct ttccagacag acagaacgac gagctcacaa 9360 tggccctcgg gaatactgag caccctggac ggacacgagg cacgccaggc tccatttcgt 9420 ggaaggttgg gtttccggac gcaggcggtt acaaatccca tgagaggagg aaaaaagtgc 9480 agcagaccca aatgcaggcg ctgcaagcaa gggtagacgc gatagaggaa cgagaagcaa 9540 atcgcagcaa acgtacagtc gaagcttccc ccgaagctac cccgctatct tagcgcagaa 9600 gcagcgtggc ttccaccgag ctgcttcagc cgaagcatgc cttgacggct cctgccagct 9660 atcccgtgga tgctatcatg gagtctcaaa attgccacct tatgacgcaa tagatgaatt 9720 tgaaggtcaa gccggctgtt ggctctgttt atcctactga acccggcgca acttttcact 9780 accggccgat tccagaagga tatgctaggg tgatggtgga tgaaataacg gagggatttg 9840 acgacctcca gcttgaccac cctaccggtg aaggggagac tcggctgggg tctgctatga 9900 agactccatg cctatggcgg aaggagctca tcaaccttcc gaactggacg ccttcgcctc 9960 ctcctcctcc tccggcgagt tagggcactg tgcctcctcc accgcctcct cctccggcga 10020 gtgacgatca gggccctcgg ccggttcctt ctccggcgca tggcggcact tcgcctgcgc 10080 cggcacgccc gagcagccgg gctcctcctt ctccgcctcg tcaacaaggg tggaagagac 10140 ccgccgccgc tccggcagct gctccggcgc gtcgtagtcc ttctcctccg cctcgtaagc 10200 aagtaaagaa gacaactgct tcgtttgctc ggccggcgtc tagcagtaca accagaggcg 10260 ggaggacata cagattcggt ccttctctga agagtccata gaagtgacca tacgagagga 10320 ccccggagga gaacgcgaag atcgcgggaa ccgaagtgga tgactggttt caagggttga 10380 aagcaaagag acatccacct ccggaggaga aggtagatcc ggtgaaagtg aagcgcactc 10440 tggctgccct ggcaaaacca cccaagtctc cgccgaaagg caactatgag cgcattattg 10500 caaagacatg ggccgaagtg gacaggttgg gaagtacagt cagtgatcaa aggctgaaag 10560 aacgacgagc agctgggaaa caaattgccc agctcggcga acaagcgaag caatcgtgcc 10620 ccccgctcaa ggtgcctagc gacatcgtcg atccgaggat ggtgcccggt tatggaaatt 10680 ttgacgatta cctgcccgac gatgtacatt atgatcccat ggaggtgcag ctacacagat 10740 acgagtatgg gaagcctctc gatatagatg aaaaatcttt aacaacgatg atgcgaagat 10800 tacatgattg gtacttgaaa atctacagag agtctagggg gagtactttg tatgcgagag 10860 ttaaaccgga gcatgacctc attggagttg aactgttgcc tattccattt gaggagttct 10920 attagttttt caatcaattg gccctcgata aaacaacgat cacctgctac tgtctgtatg 10980 tactactact tctgtcatta aatctctcta tattgctcat ctctttcatt gcatgtattt 11040 ataattatcc tcactatatt atgcagattg aaaatcgccg aattgaagaa aagacaaatc 11100 gggcatattg ggttcgttaa cacatatctc atagatgcaa ctgaggttga acatcgtccc 11160 gaagataccg aggccaacta gctacaatca ttcaaaaaaa agaaaacaaa gatataatac 11220 tctttcctta caacttcaag tgagtgttac tgtcttgtgc atattcggtt tcccttatat 11280 attagtccag gttatagtaa tgtaattgat gagttatgca tgcgtgtgca gtttccacta 11340 tattctccta gagattaggc ttgagcaggg agtagtaacc gtcttggact ctaaacgaaa 11400 agatcccaag gagtatgcgg acatgactga aatcctcaag aagtaagtta aatcgatcat 11460 tatccaccat atgaccaact ttgttcattt cctgatatca agtaattgtt ttctttgtcc 11520 ggcaaggttt ggagaaaatt caccagaaaa gttctgggac tgccaaagga gctggaattt 11580 agacacccaa aagtaagtac tatagtagca tgttccgcac atctcctagt gattcaagcg 11640 ctagtttcat caataccatt tagcattctt gcttatcagt ttcattgacc tctatttctt 11700 gtaaagtggt tgtggcagga acaagggaat gatttgtgtg gatactacgt ctgcgagtcc 11760 atccgccaca cgacctgtga gcggggcggg tactctgacg aacaatatga agtacgtaaa 11820 taacaacatt cacaatttta ttttattacc atcatttgtg ttgagtttca ttcattcata 11880 tatatatgta ttgaccccct tcttcaaatt agatgtttcg aaagcgggat gaactcctag 11940 caccaactcg catgcgagca attcaagaga aattggcggc attctttctt gaccacgtga 12000 tcgctgaaga cggagaatac tatgtggacc atgagtccgt atgattatat ttgtaagaga 12060 taattattgt atatatgtag ccggtagtgt cagatagata tacgagaact tgttgttcga 12120 ccaatctctc ggagaaggag aggtggtcga tatcacttct ctctgtatgc atatatgttc 12180 atgacgatct tctgtttcct tcgtttgctt actagctagc tagcgtgtct agtcctctct 12240 atacgtatgt atagcacgta gcgtcgacca agcacggaca taagagatga cacttctctc 12300 tattaattat agctagctaa cacaatatat gaaacaccta aattaacccc ccaaaacccc 12360 cacccccacc cctttcaaaa aaaacaaaaa ccccagccac agaaatgctg acgcgtggat 12420 gcctattggt cccggttggt gccaccaacc gggatcaaag ggtctcctat ctgggctccg 12480 cgcacaggcc acgtggaggt gcatcagtcc cggtctggat tgaaccggga ctaaagggac 12540 agggcattag taccgaccct ttagtcccgg ttcaggaacc gggactaaag gcccttacga 12600 accgggacaa cagacccttt ttctaccagt g 12631 // ID DANIELA_TM_I repbase; DNA; GRAS; 11400 BP. XX AC AF326781; XX DT 16-OCT-2002 (Rel. 4.3, Created) DT 16-OCT-2002 (Rel. 4.3, Last updated, Version 1) XX DE Triticum monococcum gypsy-type retrotransposon, DANIELA_TM_I, DE internal region. XX KW LTR retrotransposon; target site duplication; GYPSY superfamily; KW internal region; TREP231; DANIELA_TM_I. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RP 1-11400 RA Wicker T., Stein N., Albar L., Feuillet C., Schlagenhauf E. RA and Keller B.; RT "Analysis of a contiguous 211 kb sequence in diploid wheat RT (Triticum monococcum L.) reveals multiple mechanisms of genome RT evolution."; RL Plant J 26(3), 307-316 (2001). XX RN [2] RP 1-11400 RA Wicker T.; RT "Direct Submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AF326781; Positions 62878 74277. XX CC Internal region of gypsy-type DANIELA retrotransposon. CC 5bp target site duplications. XX SQ Sequence 11400 BP; 2304 A; 3263 C; 3258 G; 2575 T; 0 other; ggagcccccg ggcctgggcc atacacgatg ccgagcgctg ttgggccagg cccaaaacag 60 ggcacgggca cgcgcggcct gggttacgcc gtatctcact ccgcatccac cgcgccctcc 120 ccgaacggca cgcgtcgaat gcggcgtcgt gggagagatc gtgggtggtt tctttattag 180 gaaaggcgga acgtccgcca cctcctcctt tataagcaaa gggaaggagg ggtagtgcgc 240 ccactcaccc tctttccatt ccaatctcag aagcctccgc cccgcctccg tcttcccaaa 300 gctgaaaaga gagccgcgcc ctgcccccca tatcgccacc agcaccacca acgccgtcga 360 cctcctccac caccttcgcc atggctccga aagccgacaa ggggaaggct gtgaagtcga 420 ccgaggcgca gcggcttgcg gcgctgcgga aggagcgggc cattcccccc ccaagcttgc 480 cgcgaaggag ctgagggagt actactacct cttctggtcg acggagacgc gagcgcaccc 540 gagcacgaag gtactcccgg ccaccgctca taaaatggct ccaaacggat atcccttctt 600 cgccgtgttc ttctactgcg ggctctgccc gcccttctct gaatttttct gcgacatcat 660 gaacctacgg cctctgcctc cttgatttca cccccaatgc cgttctgacc atgacagttt 720 tcgcgcatct ctgcgaaaac tttgtcggag tccatcccaa cgtagccctt ttccgccact 780 tctttatgcc ccgagtagag agaggagagc ccttatccgg cggaatcgcc tgggtctcaa 840 ggaccggcaa gaaggactct tatctggagg gcgagttccg cggcaagtgg gaggagtgga 900 gagcagattg gtgctggatt gtcgaggaga acccgcagcc atttaccgcc cggcgccaaa 960 ctgcagtagt acgcggcagc gattggagtg acgtggcccc gaaagacgac aggctgagga 1020 ttgccgtcac caggatccaa tgcctcaggc ttgccggact cactgtaggc accgttggcg 1080 cagatttcct tcgccgccgc atcgcccccc tacaggaacg gaggaggccc gcctgggagt 1140 tcaagaatgc agcggatatc atgaggctgc gtccgggcct caactacaac ttcactgtct 1200 tggagctcaa cgcaatactt caggagctct tcaagtatga tcctgaacat cccgaagtat 1260 ttaggttgcc gcagggcgtc gttccgttgt gcaacaactc cgcgcttgat cgcatccggg 1320 taatgatgcc gctgtgcgac tcacatggac ttgtgccaac ttggcaagag cctgcagacg 1380 aggtcgtgca ggaattcttc gacaacctgg tagaagtgcc gatccgcccc gacgagaaga 1440 atggcctcac tcgcgacacc accgatgcgg agttgaagcg catcgccacc aggctggaag 1500 aggcggcggc agccgcagcg gcaggcgagt ttgcattcac catggaggag gcagaggcag 1560 cagaggcggc aagccgtgcc gcgcgagagg agcttgccgg caagaaggag cttgcggggc 1620 gaggggagcc tgtcggcaag aaagagcttg ccgggcgtga caccgagccg agtgagcccg 1680 ccgaggatac gagcggctcg ttggagatca actcctcttc ctcctcatcc tcagacagct 1740 caccgcaagc agagcctcca tctccaccaa gaaggcgtct tcacaaggcc ggggacgtag 1800 cgaggcggca ggcgagtcga cagtcgccgc gccgcgcgac acgctccacc gcggcaagca 1860 ctgttgccgc gggagcgccc cacgctgctg cggcaactgg agcggggtct tcccggacca 1920 ctgcttccgc tcccgccaag cggccaaggg aacctactcc tccgcctttc cgcgccggac 1980 gcgatccgga cttcgacttc tccgtgttca gctccgacga ggaagaagaa gaagagtaag 2040 attttcttgt tacttgtagt tcttcaatcc ttgctgtttt gtcttgtatc tcatctgctt 2100 tactctgaac cttttccttt ttaggaatct ggcccagaga gcagcgaaga gggccaaggc 2160 cccggtgatt gtcatcgagg acgaacccag cgcgacagca ggggatgcgc ccgagacaac 2220 cctgccggac ccggcaactg tcctccagag cagcctacag cgtaagtata tggcttgctt 2280 tccgctgttg ggcgcgcatg gagattcttg ctttgctgac gtctaactgt tgacttgtgc 2340 aggagcagag cagacccacc aggagcgccc ggaggccgcc tccgaaacgc caagggagag 2400 tcctccggca agggagaggt ctccggcaag ggagagcccc ccgacaaggg aggagtctcc 2460 ggcaagggag aggtctccgg cgagggacag taccagcagc cccccggtga cggagaccac 2520 ggctgcagaa cctggcacag gtaatcttct cgccccagaa cttcccttgg gttctttttc 2580 ttttgatctt ctttcttttt tggatatttg cttgattctt ctcccctttc cggctgttag 2640 atccatctgc tgcggagccg atggagaccg aggttgccgt cgacgacgcc gttgccgccg 2700 aggaagcagc cggcgctgac gagcccgctg gcgaagaggc tgccagggtt gccgctgcag 2760 aagcaggcgg gggatctggc gatcgcactg acgaccctga ggccgcagga gcgccaggcg 2820 ctgcaccgac cgccgatccc tccgccgctg ccgctgcgcc aggctccgaa gagcctcagc 2880 ctggcgtcta cttgaaggcc ggcgacgaca tcttcatcaa cctcccctgg gcgtcaagct 2940 ccagggtgcc ggtcgaagga gagagcttcg acggagaggt gctcgcctcc gccgggctgg 3000 cgctggttga cgcgccaagc agcagcagtg gcgagcctga ggaggagcgg ctgctgcgga 3060 aactggtgtc actctaccgc gcccgacaag ccaagctgga atcccgtgag gcacttgtcg 3120 cgaaggcggg agtcaacatc gagaagcgcg cggaggagct ccggggccac aatcaagaag 3180 ctctctagtc tctggcagtg gagcgggcgc gacttgccga ggagcgggag gccttcctcc 3240 tcaagaaggc cgaagccgaa gagcaacagc ggcttgccgc tgagaagttg tcggtgcagg 3300 aaggcgagct ggtgcagcgg aaggtccatc ttgacagcca tgaggaggag cttgtcgcgc 3360 gcgagcgaac gtttggcgga gccctcaaac aagcagaaga cgctgccgag gccgccaaga 3420 aggagctgga gacgaaggtg gcgcagctgg aggccgatct caaggcgagc ggtgacgagc 3480 ttgccgtgct caagattgag cgggagaagg acgaccacag ccattcggag ctgcagaccc 3540 gcctcgccga gaagggcaag gagcttgacg ctgccaagga ttccaatgca gatcttgagt 3600 cgaacctgat cgctttgacc aagacactgg acggcgccaa ggagcaggag atggccctga 3660 aggaggaggt caaggctggc aaggcgttgt tggtgagtgc cgctgccgcc cagagcactt 3720 tccgagagaa cgtggagcac tggatggagg gtcttgtgga tgttgccgca gacatcgaca 3780 aggagctggc gcagctggga atggaggatc tcgggtatcc ctccgacgag aacctccaac 3840 ccagcgccaa gctcacctcg ttcttcaaag gcgtggcgac ggccctccgg cgactccggg 3900 aaaggatccc aaagcaggtg gccgatgagt cgcgcaagat ctgtgcggga gctcttcaga 3960 aggtgctggt gaaggtggcg ttccgcaacc tgggcctcaa cctcaccaac gtcctcaggt 4020 ccttgccgcc ggatgccgat ctggaggcgc tcaagaccct tgtcgcaccc attgtggaca 4080 aggtgagcgg gatcaagagg gttgagggtg atcgcgtaga ctaggccgcc cgttttcttc 4140 ttttcttgtc gctgctagtc atgttatgaa aacaatctgt tagagccgcg acaagctatc 4200 ttgtaatata actctatttt gggtactgat tgcaatgtta tttcctctac ttgattcctt 4260 cctttgtatg ttttttccct acgcttttag ggaacttgcc gacgcaggca cctttgctgc 4320 gagcgctgag tgcgggacgt cagcagcctg ctggcggtgc cgctgccggc aagaaacctt 4380 gtcgcagcta gtcgcagctc acttaagttg ttgagcggac tcgaaacaac agtaagggcg 4440 caactagcta cgagttggtt cctccgcgca caggttttcc atacaaagca cggtcattca 4500 aggaagataa cttaaaaaat ttaaaaaaaa tctgattgct caaactttgg caacttatct 4560 tttctgttgt ttgcttcccg gcaaggcgaa actttcttga acgacgcctg gtccatacca 4620 tatcttctcc ttcccccctg gcaaacttgt gggcgaggga accttccttt ccttgagaaa 4680 aaaagagaga ggagaaaata aaggtatgga gccttatggc ttgttgctgc ttaccggggg 4740 taagtgctgc acaaagtgtc agataacaca tgcaaataat aaaaaaacat gaaatcgaca 4800 aggtgtgcgg agcacataag ctttatgcat ggggtctgcg cccggctttg tacaaaggat 4860 tacatgcaac agcggcaaga cttgtacaaa aggtggttgc cggaacgggt tccggcaacc 4920 gcgccctacg ggtaaaactt gcgaagatgc tcaatgttcc aggagttgct cactggaatg 4980 ccatcttcgg tctcaaggcg gagagcgcca ggcctagtga ctcgtttcac ccggtaaggg 5040 ccttcccact tcggcgtcaa cttgttggaa ttcttggcgg actgaatgcg ccgaagaaca 5100 aggtcgcctt cctcgagact tctggcgtta actttgcggc tatggtagcg gcgcaaagct 5160 tgctggtagc gagcagctcg cacagcagcc tgaagacggt cttcctcaag gagcagcgcg 5220 tcatcttgtc gcagctgctc ttgctcgagc tcatcataag cgagcactcg aggtgacccg 5280 tatacgagtt ccatggggag aactgcctct gctccataga ctagagcgaa aggtgtctgg 5340 ccagtggctc gatttggcgt cgtcctgatc gaccaaagaa ccaccggcag ctcctcgatc 5400 cagtttcttc cgcacttgtg cagcctgtcg aaagttctgg tcttgatccc acgcagcact 5460 tcagcatttg ccctctccgc ttgaccgttg cttctcgggt gagcaacaga agcgaagcag 5520 accttggcgc caagatcttg gacgtattgc atgaaggtgc ggctcgtaaa ttgcgtaccg 5580 ttgttggtga ttatcctgtt aggcatcccg aaacggcaaa caatcgacct gaagaacttg 5640 actgctgact gtgctgtcac cttcctcact ggttccactt ctggccactt tgtgaacttg 5700 tcgattgcaa cgtacaaata ctcaaagccc ccgactgctt ggggaaaggg gccaaggata 5760 tcgagccccc agaccgaaaa tggccaggat aaagggatcg tctggagagc ttgagctggc 5820 cggtgtatct gcttggaatg gaactggcac gcttcacact tggttacttg tgcagttgca 5880 tcctggaggg ctgtcggcca aaagaaacct tgccggaatg ctttgccggc aagtgctctt 5940 acgccaatgt ggtgaccaca tatgcctcca tgtatctctg ccaacagctt ttgtccatct 6000 tctcggggaa tacacttcaa tttcacacca ttgagtcttc ttctgtacag tgtgctgtcg 6060 acaaactggt acatacttga ctgccggtct actctttccg cttcttcttg ctcttcggga 6120 agttctcctg tctgaaggaa atggacaatt tgctgtgccc atgctggagc ttgcggctcg 6180 acaacaagga ctaaaggcgt atctgctgct gcgggaacgc ccgcttctac ggcaagggcc 6240 tgcggctctg caggagcttg acgttccccg gcaagcttgc cggagcaaaa cttgtcggga 6300 gcgtctgctt taacggaaca aaccctaggg cttgccggag cagactgctc cttagcactc 6360 ttggcgtcga tcttggggac cttcttggcc gcggcttcgg gaagctctgc cggaaaatag 6420 tcaccagaaa tcaacttcct cttcttgctc tgtacagttg atggtgttac ggatggtcga 6480 gtcagcttga gcacaaagat ccctggttcc acaggtaact taagtgcagc gcactttgac 6540 aggccatcgg caatgtcgtt ctgagctctt gggacatgct ccatctgtag gccattaaag 6600 tgctcttcta gctttctcac ttcgtcgaca taggcttcca tcaacggact ctgataattc 6660 ttgttcactt ggcggacgac aagctgcgag tcacccctga caatgagctt cttgatccca 6720 tggtctgcca cgatcctgag accggcaagc aagccttcat actctgtagt attgtttgtc 6780 gcttgctcct tgggaaagtg catctggact acgtacttga ggtgctctcc ggtgggtgag 6840 acaagcagca cgccagcacc ggcgccttgt agcgagaagg caccgtcaaa gtacatgagc 6900 cgctctttgc ttgcttcctt gacggggatg ctcgtctctg gaatttcttc atctggtgtt 6960 ggcgtccact ctgctacgaa ttctgccaat gctctgcttt ggatagttga agtactctca 7020 aacttgaggc caaagcttga cagttctagt gcccactcaa caatcctgcc tgtcgcttct 7080 ggattctgca gtatcctctt cagcggaaag cgagtgacaa ctgtgatctc atgtgcttgg 7140 aagtaatggc gcagctttct cgaggccatg agaaggccga aaagcaattt ctgcacacca 7200 aagtaccttg acctagcccc ctgcagaagg gaactgacaa agtaaactgg gcgctgcacc 7260 attctcttct gtatctcctc gcgcacctgc gcagatccat ctttgtcggg accagagctt 7320 gtcggggaag ccccctgctt gttgctggat gcgcttgccg cggttgctgg ctcgtcatct 7380 gcctccctct ctgccactaa cgcatcacta accacttgat tggttgccgc tatatacagc 7440 agcaacttct cttgtggctt aggtgcgaca agtgttggag tggaggactg gtatttcttc 7500 aagtcctgca gcgcagcctc cgcttccgga gtccatttca ttggacctgc cttttcaaaa 7560 ttttgaaaaa cggcagggcg cgctcagcag accgagaaat aaacctgctg agagcagcca 7620 cgcaaccggc aagccttcgt acatccttaa cgcgctttgg tgcttcgatc tgctcaatgg 7680 ccttgatctt gtcgggattg gcttcaattc cccgctgaga cacgaagaac ccgagaagct 7740 tgccgaaggg aactccaaac acacacttct cggggttgag cttgaggttg atcttgcgca 7800 gatttgcaaa ggtctcgtct aaatcttgaa tcagagttgc cctgtccttg ctcttgacca 7860 ctatgtcatc catgtatgtt tccacatttt tgtgcatttg tggctcaaga gcgacatgga 7920 ctactcttgc aaatgttgaa ccagcattct ttaaactgaa aggcatccgt atgaaacagt 7980 acgtgccaca tggagtaatg aatgcggttt tctcctcatc ctcttctgcc atgaagattt 8040 gatggtatcc tgagtatgcg tcaagaaatg aaagcaagtc acatccagcc atggagtcaa 8100 caatctggtc aatgcgcggc aagggaaatg ggtctttggg acaagcttta ttaacatcag 8160 taaagccaat acaaagcctc catttcccgt ttgccttgcg cacgactaca ggattggcca 8220 accacgtagg atggagcact cctctaacaa ggcctgctgc ttccaatttc ttgatttctt 8280 ctgcgatgaa ttcttggcgc tccactgctt gcttcctgac cttctgcttg acgggccgcg 8340 catgaggaca aacggcaaga tggtgctcaa ttactttcct gggaacaccg gggatgtcag 8400 acggttgcca cgcaaacacc tcgacgttcg cccgcaggaa gcaatgagcg cgctttccta 8460 tttagggtca agagtggcac tgatggtgaa ggtaccacca gtgtcgtcct ccttggcgga 8520 cactttcttg gtctctggcg gagccgccat tgccttctta cacttgccga tggagctcga 8580 tggtgcgtcc tcgacggtag cgcagcactc cgaagaggtg cgcttgccgg agtgggcatc 8640 agaactcttg tcggacttgg tcttcttctt cccaccggga gcttcagcgg caagtgattt 8700 gcgatctgtt gcggctgctg cttcccggta gatcttgtcg gcgcagataa gagcatcctt 8760 cttgtctcca gggacagaga tgacgcttat cgggcctggc atcttgagca tgttgtatgc 8820 gtagtgagaa gctgccatga acttggcgag tgcaggacgg ccgagtatcc cattgtaagg 8880 caatggaaaa tcggcaacgt caaaagtgac cctctcagtc ctgaagttca gctcgctgcc 8940 aaatgttacc ggcaacgtga ccttcccttt cggcttgctc cttcccgggt tgattccttg 9000 gaatgtgccg gtctcttcga gctcgctgtc agggatctgg agtttctgga gtacagcgga 9060 ggagatcagg ttcaagccgg ccccaccgtc aactagcatc ttagtgacct tgaggttgcg 9120 gatagttggt gaaaccaaca tcggcaagca cccgaccgca gttgtgcgat cagggtggtc 9180 ctcaatatca aagatgatag gcgtgctgga ccatttcaga agtttgcgcg actcgagagg 9240 tggttctgcc gcattgactt cccgcaccca ctgcttgagt tggcggtgcg aagtatgcag 9300 acaagcaccg ccgtcaacgc acaagacctc tgtggctttc tgaaactcct gctcactggt 9360 ctcgacatcc tccatgtctt cgtcgtcatc gtcatcttca tcgttgtcgc ggccgcaggg 9420 aggtctgtct ccttgccgct gcttggcctt gccacggcgt cctccctgac cggcgcgctt 9480 cttgccggtt tctccagcgc ccccttgggc cctctccttg tcgcgccgct cgtactcagc 9540 tttttgctgc tggacaagct gctcgacttt cttgcagctc tggaggtcat ggcccttggt 9600 gcggtggatc ttgcagtact acttgtcggt gccgtcctgc ttgtcggcga ccgccacggc 9660 ctggcagttg gtgcatgcgg caatttcctt gtcggagcta ccaactttgg ctttcttggc 9720 gccaccgtcg ttgccggact actcaacgac tagtacatct ttgcctttct tcttcctatt 9780 gttccgccgc cggtttttct ttgccggggc agcatcttca ctgtcagatc ctcccgctcc 9840 cgcagtttct ccggggagtt tcctcccttc ttcagcacgt gcacacttgt cggccagggc 9900 atacagctcg ctgatgtctt tgatcttgca catcgccatc tcctcccgca tcctgcggtt 9960 acgcacgtta tgatggaacg cactgatgac tgcggcaggg tggacatctg ggatgttgtg 10020 ctgtacacgg ctgaatctct gaatgtactt gcgcagaggt tctccttcct tctgggcgag 10080 caggtgaagg tcactctctt ggccatgagg tttgtggccg cctgtaaagg cgccgacaaa 10140 ctgatggcac aggtctgccc aggaggatat ggagttgtcc ggcaagtgca tgagccagga 10200 cctgacgttg ggcttgagca ctagcaggaa gtagttggca aggatcttgt cgtcccgccc 10260 cccagcagct tgcaccgcga tggtgtagat gctgaggaac tccgacggat gcgacttgcc 10320 gtcgtacttc tctggtacgt ctggcttgaa attcttcttg ttgggccact ggacttgccg 10380 cagctcacgg gtaaacgcag ggcaacctcc cgcgtacggc aagtcgcctg gttcccctgg 10440 cacatgcatg tcaacagagg gcccagcgcg ctggtctgat tgacgccgcg cttctcttcg 10500 gtgctcgatg cgagtacgag cgtcttcttg ctgtcgttcg tgaagaactt ggcgctgatc 10560 gcgacgagct cgtggatccg atgatgcggt ggagtcgctg tcgtggtgga tccggcgagt 10620 cggtgatcct ggccttcggg gcggagagtg cacagtggtt gcacccccac cggtcttgtc 10680 gccaccggtt cgcgcctggc tgacttgccg cggctgcgat gcactcggct gccgtggatt 10740 gtcgccgttg gcgaagccga tgagactctg aatggtggcc ctccagtcgt cgatcttgtc 10800 tgccgctgga gggtagtcta ggagcagttg agctcgcgcc aaagcttctg ctgaagtggc 10860 gggcggcagc ggcgaacggt gcgaggaacg ggatatgctc ggacgtctaa ccatgttaga 10920 aggagcagta tctcgtccag gcgaccacgc cccgctcgcg ccagcacgtt ggcacgcatg 10980 ctggtcttga gcactccgaa atccaccagc tcgatcttgg tccagcaagc gtatggtact 11040 gtgagtacca tgacgctgct ggtcccgcgc ctcctgggat gggtgcggtg cgtgtacgga 11100 cgccgaggtc ttggagtgcg cccggtcgtt gtgggagccg actgcgccac cgatgagcag 11160 cgcagccttg tccttggacc tggcagcacc gtgagcaccc tcgtcggcgc ccgttcttcc 11220 gccggcgtct accccaccag ccgtttgctc cggcgatggt gggtttggcg cggacggagc 11280 agccgcttcc gaagccttct tcttcggcgg catgtcgatg aagatgatga agatctagtt 11340 cgtgcggacg ccggatcagg ttcacacaac ctcgacgccc cctacctggc gcgccaaaga 11400 // ID OPIE2LTR repbase; DNA; GRAS; 1271 BP. XX AC U68408; XX DT 06-MAY-1999 (Rel. 4.04, Created) DT 06-MAY-1999 (Rel. 4.04, Last updated, Version 1) XX DE Long terminal repeat of Zea mays retrotransposon Opie-2. XX KW LTR Retrotransposon; Transposable Element; LTR; OPIE2LTR. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-1271 RA SanMiguel J.P., Tiknonov A., Jin K.Y., Motchoulskaia N., RA Zakharov D., Melake-Berhan A., Springer S.P. et al.; RT "Nested retrotransposons in the intergenic regions of the maize RT genome."; RL Science 274(5288), 765-768 (1996). XX RN [2] RP 1-1271 RA SanMiguel J.P., Tiknonov A., Jin K.Y., Motchoulskaia N., RA Zakharov D., Melake-Berhan A., Springer S.P. et al.; RT "OPIE2LTR."; RL Direct Submission to Genbank (29-AUG-1996)Biological Sciences, RL Purdue University, 339 Hansen LSRB, West Lafayette, IN 47907, RL USA. XX DR GenBank; U68408; Positions 1 1271. XX SQ Sequence 1271 BP; 297 A; 293 C; 348 G; 333 T; 0 other; tgaaagggaa atgtgccttt gggccatttc taagtatttt ggtgattgag tgcaaacaca 60 agtgcttaaa tgtgaaaatg tgcccgtggt tgaacaaagt gcaaatcaaa attaaaggta 120 tgtttctaag ccttagtaca ttggttttgt gtactaatac cttgtctaag tgttagaaac 180 aggaagaaga ataaaagaaa agaagtggag agtggctgtg tacagccaaa ggctgtttcg 240 ggctggggca ccggactgtc cggtgtgcac cggacagtgt ccggtgcgcc agaccagcgc 300 ggagcaaacc agccgctctc gggtttttct ccggcgactt cggctaaaat tcaccggact 360 gtccggtgtg caccggactg tccggtgagc caacggtcgg ctgggccaac ggtcggccgc 420 gcgattggcg cgcgacacgt ggccgagcca acggtcggaa aggtacaccg gactgtccgg 480 tgtgcaccgg acatgtccgg tgcgccaact gtgcgcagat ctgcatcaga aagcaacggt 540 cggatgagct ttttatggaa acaaatcggg caccggacag tgtccggtgt gcaccggact 600 gtccggtgcg ccacgagact gaaggcaaag atggccttcc agatttgttc ccaacggctc 660 ctagctgcct tggggctata aaagggaccc cttggcgcat ggaggagtac cccaaagcat 720 tcctacaaca cttctaagca ccaagacgtc aatctcacgc gttcgtttca ttgtgatagc 780 atatagagct cttgtggagt ttttgagttg tgttgcgagc tctttgtgcg acttgtgtgc 840 gtgttgttgc tctgatcttt tgaagtcttg tgtgcgttgc tcattccctc cttactccgt 900 gattctttgt gaacatcaaa gtgtaagggc gagaggctcc aagttgtgga gattcctcgc 960 aaacgggata agaaaagaaa agcataacac tgtggtattc aagttgatca ttggatcact 1020 tgagaggagt tgagtgcaac tctcgtccgt tgggacgcca caacgtggag taggcaagtt 1080 tttgtacttg gccgaaccac gggataaacc actgcgtctt ctctgtgttt gatcttctgt 1140 ggttatcgta ttgtgcaagg ccttcactct agccacttgg cattaactgt gctaactctt 1200 aatcaagttt tgtggctata agtttaagtt ttacaggatc acctattcac ccccccctct 1260 aggtgctctc a 1271 // ID WIS2_TM_LTR repbase; DNA; GRAS; 1776 BP. XX AC AF339051; XX DT 16-OCT-2002 (Rel. 7.09, Created) DT 16-OCT-2002 (Rel. 7.09, Last updated, Version 1) XX DE Triticum monococcum copia-type retrotransposon, WIS2_TM_LTR, long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; KW COPIA superfamily; Long terminal repeat; TREP96; WIS-2-1A; KW WIS2_TM_LTR; retrotransposon; target site duplication. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RA Echenique V., Stamova B., Wolters P., Lazo G. and Dubcovsky J.; RT "Frequencies of Ty1-copia and Ty3-gypsy retroelements within the RT Triticeae EST databases."; RL Theor. Appl. Genet0-0 (2001)In press. XX RN [2] RA Dubcovsky J.; RT "Direct submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AF339051; Positions 713 2488. XX CC WIS2_TM_LTR is a long terminal repeat from WIS2 CC retrotransposon. 5bp target site duplications. XX SQ Sequence 1776 BP; 410 A; 429 C; 481 G; 456 T; 0 other; tgttggaaat atgccctaga ggcaataata aattgattat tattatattt ccttgttcat 60 gataatcgtt tattatccat gctagaattg tattgatagg aaactcagat acatgtgtgg 120 atacatagac aacaccatgt ccctagtaag cctctagttg actagctcgt tgatcaatag 180 atggttgcgg tttcctgacc atggacactg gatgtcgttg ataacgggat cacatcatta 240 ggagaatgat gtgatggaca agacccaatc ctaagcatag cactagatcg tgtagttcgt 300 atgctaaagc tttactaatg tcaagtatca tttccttaga ccatgagatt gtgcaactcc 360 cggataccgt aggagtgctt tgggtgtgcc aaacatcaca acgtaactgg gtggctataa 420 aggtacacta cgtgtatctc tgaaagtgtc tgttgggttg gcacgaatcg aggctgggat 480 ttgtcactcc gtgtaaacgg agaggtatct ctgggcccac tcggtaggac atcatcatag 540 tgtgcacaat gtgatcaagg agttgatcac gggatgatgt gttacggaac gagtaaagag 600 acttgccggt aacgagattg aacaaggtat cgggataccg acgatcgaat ctcgggcaag 660 tatcgtaccg atggacaaag ggaattgtat acgggattga ttaagtcctt gacatcgtgg 720 ttcatccgat gagatcatcg tggaacatgt gggagccaac atgggtatcc agatcccgct 780 gttggttatt gaccggagaa catctcggtc atgtctgcat gtctcccgaa cccgtagggt 840 ctacacactt aaggttcgat gacgctaggg ttataaagga agttagtatg tggttaccga 900 atgttgttcg gagtcccgga tgagatcccg gacgtcacga ggagttccgg aatggtccgg 960 aggtaaagat ttatatatgg gaagtcctgt tgtggacacc ggaagagttt cggggtttat 1020 cggtaacgta ccgggaccac cgggagggtc ccgggggtcc accaagtggg gccacctgcc 1080 ccagaggctt gcgtgggcta agagtggtga gggaccagcc ccttagtggg ctggtgcgcc 1140 tccacaaggg cccaaggtgc ccaagaggtg gaaagggggc aaaccctaat gggatatggg 1200 ccttagggcc catattgggg cgcctccctc tctcctcccc tcttggccgc cacccccttt 1260 gccatctagg gctgccgccc ccctaggggt gggaacccta gagggggcgc agcccctccc 1320 cttcccctat atatatgagg cctaaggggg ctgcccaaca cacacgcgat tcaatctctc 1380 ttggtgcagc cctgcgtctc ttcttcctcc tcttctgtgg tgcttggcga agccctgcag 1440 gatagccacg ctcctccacc accaccacgc cgttgtgctg ctgttggatg aagtcttcct 1500 caacctctcc ctctctcctt gctggatcaa ggcgtgggag acgtcaccgg gctgtacgtg 1560 tgttgaacgt ggaggtgccg tgcgttcggc acttggtcat cggtgatttg gatcacgatg 1620 agtacgactc catcaacccc gttcacttga acgcttccgc ttagcgatct acaagggtat 1680 gtagatgcac tctccttccc ctcgttgcta gtctctccat agatagatct tggtgatacg 1740 taggaaaatt ttgaatttct gcaacgttcc ccaaca 1776 // ID Helitron1_ZM repbase; DNA; GRAS; 11199 BP. XX AC . XX DT 19-SEP-2007 (Rel. 12.09, Created) DT 19-SEP-2007 (Rel. 12.09, Last updated, Version 1) XX DE DNA transposon from maize. XX KW Helitron; DNA transposon; Transposable Element; Helitron1_ZM. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-11199 RA Obukhanych T. and Jurka J.; RT "Helitron1_ZM."; RL Repbase Reports 7(9), 846-846 (2007). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS 2502..4709 FT /product="Helitron1_ZM_1p" FT /translation="MIHGPCGDYNRRCPCMKNDRCSKKFPKTYQDETVIDA FT FGYTLYRRRNNCRFVVKGGVKLDNRSVVPYNMQLLKKYNAHINVEWCNKTH FT MIKYLFKYVTKGSDRAKIYFELTANTTNASPGPQIAPPNEIREYIDARYLS FT TCEALWRIFEFDIHFRVPSVERLAVHLPAKNIVQYEPGADLQALLLSRAAK FT KTMLTEWFETNLKYSDARHLTYCDFPKEWSWDVSIRCWRRRRLSSAKIGRM FT YYVHPTAGELYYLRMLLMFVSGATSFVDIRTFQNTVYETFREACEARGLLE FT GDNEWNLLFDEAIVSASAFQLRQLFVTIVVHCPVCNVRALFDKYWIYFTDD FT IHRGLREALGNPHYTAPHEQLLTLLSRKLADTFANSGANIADYDLPILSAC FT GDEVFGNRLINDELRPEPLLLRDHAAAAVSQLNADQRLIFEKLTESALSCS FT PGIFFVCGHGGTGKTFLWNAILTHLRSRQKIVLAVASSGVASLLLPKGRTA FT HSRFKIPFDLDESGVCGVKRGTMLSELIQRTSLVIWDEAPMTHRHCFEALD FT RTMRDILSEHRAENANIPFGGKPIVLGGDFRQILPVVRKGSRSAIVNASIT FT SSPLWQHATVLKLRTNMRLSNPSLHGKERADLEQFSKWVLDIGDGALPAMT FT RGDESEPTWVTIPEDLLIHTDGDAAAALISEVYPDLLERYMDPTYLATRAI FT VCPNNLTTDKINDYIVSMLPGHGVQCLSCDTNLKGV" XX SQ Sequence 11199 BP; 3038 A; 2531 C; 2387 G; 3188 T; 55 other; cgtttcggac ctcctcctct tcccccaatg cctactttct cgcagagata tgcctgtggt 60 atcttccctt ccatacgacc ctgttagttt ggcattccct gttgttgtgt gtgctgctgc 120 taatggatgg gggtacatgt gagaacatgg cgtgttgccg tcgaaacccc attgcccaac 180 gttctgcaat ttcgcaaagt ctgcactaat attatgcgtt ctttgggttg aatatagcct 240 ttgtttaagg caatctgtct ctttcccttt cgcatagaca accaaacatt cattatgtct 300 ttgaacagct actatcgaac acatgaacac acttgatcag ccatccgctt cggcgccggc 360 acatgcgtcg cgttatgcaa tttcgttgca ctctcagcgg gttcgtcaaa agcggccagg 420 ttagtgactg tcaagctttt gatgctgctt gtatctacta caactctatg cgcatactaa 480 gatgcgtgtg cacgccgttt gtaggcgaca agtccttact cgactttcct acgacggttg 540 ccaccgctaa cagacaccat cgcaaacaga ggatgcgtcg tacgcttgcg tctgctgaac 600 gagcatgtgc caacaatggt ttttccctac cgcctgtctt ttccaaaata atctttaggt 660 ttcatatctg gtgggcgtta aagaaatcct atgaatttat gctcgacttg ctgcttatag 720 ttagcacgga tgcagcctca ccgcctcttg aacgatcata cgtcgagttg cttaaaggtg 780 cttgtgtacc acctagatta ttttctctac atattcctaa agtaatccat gcagccttta 840 cacatctttg cctgtagaga cctacaaaga tcgctcatac tatggtggcc catcagacga 900 gtgcccacat tgtggcgccg ttttctggtt tcaggaacgg gtcaaaagtg tgtctgctgt 960 tgcgcagcgc aggcttgtgt acaacctttg ttgcagagga ggtaagattg ttttggagcc 1020 ttacaaatgt ccaccggcac ccttatgtga cctactgcga ttcgatggtg atagtcgtgc 1080 cagaaggttc cttaggcaaa ttcgctcata caattccctt ttcgcgttta cctcactggg 1140 tgccgtcgtt gatagatcga taaataacgg tactgcacct tatgttttca aaatcaatgg 1200 tgtcgtacac catcgcattg gctcgctact acccagtcat ggattgcgac cacagtttgc 1260 gcagctttac atatatgaca ctgaacacga ggtgcaaaat aggttgggca tgtttgagaa 1320 tgaggctgat gtccatgatc gtccggatcc agaggtggcc cgtttattac ttaacatgct 1380 agatgagcat aacaagctgg tcgcggcatt tcgctttgct aaagaacgtt tagatgaaga 1440 aggcgaccaa aaggtgacgt tgcgattgtt aggctgtaac acacgtcatg acgcacagta 1500 caacttaccg gccaatggtg agctcgctgc tgtaatagtg ggtgattgct caccttcaca 1560 gtacaagtac gatgtcctcg tgcatgctag agagggtggc ctcaaacatg tttcgtgctt 1620 gcacccgtcc tacatggcct tgcagtaccc gctgcttttc ccttacggtg atcgtggata 1680 ccaccttgga ataaaatatt ctgacgtggg aggaggcgat gtctcatgcc gcaagtatgt 1740 tacaatgctt gaatttgtta gacatcgttc ccattacagg ctcaacgaac cgaacccatt 1800 cacttgctac ggcaggctga gcaaccagct agctgttgat gcgtattcta cgatcgaagc 1860 gtctcgattg cagttcatag cggaccacca aaaagaattg cgttgtgaat ccgtacaggg 1920 gataaccgac gccattggca ggggtctcac cagtgcagat tcggttggtg gaagagttat 1980 tgtgcctgca tcttttacgg gcggccgaag gtaccatgta atgaactacc aggacgcgat 2040 ggccatctgc agagtatacg gcccgccaga tctctttgtc acgttcacat gcaaccctaa 2100 atggaaggag atagtcgatg cgctgcgctt cgagcctggt cagcagccat gcgatcgttc 2160 tgatatcgtt gtaagggtct tccatatgaa ggtcgatgaa ttcatagcag acattagaga 2220 aaataaaatt tttggtccta tccgtgctgg tgagcttcat cttaacttgt cacattgagt 2280 ggttccttaa tatttctttg catgctctca tctatagtct gtcctatgca gtgatttaca 2340 ccgtagaatt ccaaaaaagg ggcctaccgc acatacactg tcttctatgg ttgcttggtg 2400 gtcgttcgga gaccgacgca tgtgccattg acgctttcat atgtgctgag atacctgacg 2460 ttgccattga ccccttgggc tatgctctgg ttgatgaatt catgatacat ggtccatgcg 2520 gtgattacaa caggcggtgt ccatgcatga aaaacgatag atgctctaag aaattcccta 2580 agacgtacca agacgagact gtcatcgatg cttttggcta taccctttat agaagacgaa 2640 acaattgtcg gttcgtagta aaaggtggag taaaattgga caataggagc gtagtgccat 2700 acaatatgca attgctcaaa aaatacaatg cacatattaa tgtcgagtgg tgcaacaaaa 2760 cacacatgat caagtacttg tttaaatatg ttaccaaggg aagtgatcga gccaagatat 2820 attttgagtt gactgcgaac acaactaatg catctccagg tcctcaaata gccccgccaa 2880 atgagatccg cgaatacata gatgctagat acctatcaac atgtgaggct ctatggcgaa 2940 tcttcgaatt cgacattcac tttagagtac cttctgtgga acgtctggcg gtacacttac 3000 ctgcaaaaaa cattgtacaa tacgagcctg gggcagacct acaagcattg cttttgagcc 3060 gtgcagcgaa gaagacaatg ttaactgaat ggtttgaaac aaacttgaaa tatagtgatg 3120 cacgtcacct gacttattgt gatttcccaa aagagtggtc gtgggacgtt tctattaggt 3180 gttggcgtag aaggaggttg tcgtctgcca agattggtcg catgtactac gtgcacccaa 3240 cagctgggga gctatactat ctacgcatgc tcttgatgtt tgtttccggt gcaacgagct 3300 tcgttgatat aaggaccttc caaaatactg tgtacgaaac gttcagagag gcgtgcgaag 3360 cacgtggttt gctcgaaggt gacaacgagt ggaaccttct atttgatgag gcaatagtct 3420 ctgcctcggc gtttcagctt cgacaactgt tcgttaccat tgtcgttcat tgtcctgttt 3480 gcaatgttcg tgctttgttt gacaaatatt ggatctactt caccgatgac atacaccgtg 3540 gacttagaga agcccttggc aacccgcact acacagctcc acatgaacaa ctccttacgt 3600 tgctttcgag gaaactagca gacacgtttg ctaacagtgg tgccaacata gctgattatg 3660 acctgccaat cttatcggcc tgtggtgacg aagtgtttgg caaccgactg ataaacgacg 3720 aactgaggcc tgaaccattg ctattgcgtg accatgctgc cgctgctgtc tcgcagttga 3780 atgctgacca acggctcatt tttgaaaagc tgactgaatc tgcgctctcc tgctcgccgg 3840 gcatattttt cgtatgtgga catggtggga cgggtaaaac tttcttgtgg aacgctatac 3900 tcacgcattt gaggtcccga caaaaaattg tgcttgctgt agcgtcctct ggcgtggctt 3960 cgctactatt accaaaaggc cgtactgctc attcacgttt caaaataccc ttcgatctag 4020 atgagagtgg tgtttgtggt gtcaagagag gtaccatgtt gtctgaactt atacagcgga 4080 cttctcttgt catatgggat gaggcgccga tgacccatag gcattgcttt gaggccctag 4140 acaggactat gcgtgatatt ctttcggaac atagagcgga aaatgcgaac atcccatttg 4200 gtggcaaacc tattgtgctt ggaggagact ttcgccagat tttacccgtg gtgcgcaaag 4260 gctcacgatc tgccatagtg aacgcatcaa ttaccagctc accgttgtgg caacatgcaa 4320 ctgttttgaa actacgaaca aatatgaggc tctccaaccc gtctttacat gggaaggaac 4380 gtgcggactt ggaacaattt agcaaatggg tcttagatat cggcgatggt gctctgccag 4440 ccatgacaag aggagacgag tccgaaccta catgggttac gattcctgaa gatttgttga 4500 tacacacgga tggtgatgct gctgcggccc tcatatccga ggtctaccca gatttgttag 4560 agagatatat ggaccctaca tacttagcta cacgcgccat tgtatgtcct aataacctta 4620 caactgataa aataaacgac tacattgtct caatgctccc tggacatggt gtccaatgcc 4680 ttagctgcga cacgaatctc aaaggcgtct gaacgcatac ctgattttga catgctatat 4740 cctactgaat tcctaaactc tattaatgca gcaaatttcc cttgccacaa actcgtgcta 4800 aaaagaggcg tcacagtcat gctgctacgt aacttgaacc agaccgcagg gctttgtaat 4860 ggaacaagga tgcttgtaac tgagatcggc catcgtgttc ttaaatgcgt agtgctaacg 4920 ccctccggag tcggcgaaga ggttttcata ccgaggattg cgcttaacac taccgacgtc 4980 aaatggccct tcacattgca aagaagacaa tttccaatac gaatatgcta tgccatgacg 5040 attaataaga gccagggtca gaccctctca acggttggcc tctaccttga cagacctgtg 5100 tttacgcatg gccagcttta cgtcgctgtt tcaagggtta catctagaag tggtcttaga 5160 attttgattg aaaatcctga tggttcctgc ggatcacaga ctcgaaacgt tgtttaccgg 5220 gaagtgttgc gggccgtaga tgcggacccc cttcagactt cttagtgcat gatcgactca 5280 gacttgtaca taaccaatgt gtaaaataaa aatgtgtata ccagcaacgc gtttagttat 5340 cgtacctatt ctattgtacg actacttccc catcaaaagm aatttttggt ctcctatacc 5400 gttcatctag cagcctaccg gcatgcaagc actatacgtg gcaagtttac aaagggaaac 5460 cactatgtct gcatgctcca atagatcttg tcatacaaca tccgtggtag atgcctactc 5520 aatgatgttg cactaacttt acctggcatg tttctcctat cctaaatatt ttttttgggt 5580 aaacatactg cccttatcag catcgagtgt aatgtttatt gttttatggt ggttgcttat 5640 ttcgctggaa atgactgacc tctgcttcat tactgcagat gggggacata ctcattccta 5700 gccttatggt tggagactgc tctcacagct tgtgtgtgcg tgtctctagg ctttgggaat 5760 tccttgatcc tcaggatgac agtaggctcc tgcatactga tcttgttttg cttgatgaag 5820 aggtagatcc atctttatac tggtctaata cttgtgcatg cataataacc atcagctcat 5880 acaacatgat atacaatgtc ctagcagttc ttctatacaa tgctctatgc aattcttgcg 5940 tgttgtttaa aatgttacct ccttttgtta gggaaacagc atacatgccc agatctatcc 6000 tccgttatgc caacagttca gtgcgctgct tgatgaggga ggggtataca acttgaagta 6060 tttcttagtc aggaaagcta acagattcta caaaccggta gaaaactgca acatgatcag 6120 ctttacaaag tggactacgg ttgaggttgt cctccagatc ccccctgctt ttccggtttg 6180 cacatataac ctcactccca tagaacagct ccaaccgcgc gtggactaca aggaatattt 6240 cactggtaac cttctaggca tagtggttta catgttacaa gtaacatgaa tacagtacta 6300 atgccctcgc catctctatg gtagatgtgc tcggtgttgt cagtgtgatc tcccatgttt 6360 catcactacg cacaagggga cgacaggctg aggttatgaa gagaacagtc actataagca 6420 atgcaaggta tcatwtgcat tcctatcctg ctatacattc cttttgggtg ccacatacgt 6480 gtatgtagtc cagttttgtt tgcaacaaca tagcaaggaa cccgtgaaca gcctgcaacc 6540 taaaccacat attaccatcc gtgtgggggc taccgcttct tattctccac gttagcaaaa 6600 ttgtccatac gctcaaggaa atagatgaag ggaaaatgca cctagacagt aagaacgcca 6660 ttagatcacg ctgggggtca atttgcgtcc aaaaacttag caggactatg tccacaaatc 6720 atgcaggggt tatgctacaa acaggttggc catagtggga aataaaaaat gccatcttcc 6780 ttgcagagga aaactggttc taaactacct atgtcttcag ttgaccatac ttcattgcaa 6840 tgtaccttag aagagatcat tttccctgct cagccaatcc tccatgtcta atattatcca 6900 ttgccgggac aaagtttctt ttagtacatg ggcctaccat gcacactgtg ctcatataga 6960 agattactaa acagcttcag ctgccatcga ccatttaaac aagcagctat tttgaagcct 7020 agcatttagt gttctacgta cctcgcacgt aatttgcaat atgaaatagc actctagatg 7080 cacagtttac gacttttgtt tctttgcgat gtccacacct aacacgatac aatgaccaat 7140 ttatttgtaa actcgctgtt cttcactccg acagggatac tgggccaacc gttgatgttg 7200 tgctttgggg cgagcgggcc acagctttcc cagctgaaca ggtccacagg gacagtggat 7260 cctcaccaca gatcataata tttgttggca ctctcgtgag gagttacgct ggtaagtcta 7320 ctacatccct ttggttgcac tgctaataca catgagcatc tgaaaggttc cattgtattt 7380 tagataatgt gtctttatcg ggtggatcat catgcaagtg gtacataaac gcaccggtcc 7440 cggaagtaaa cgctctcaga gctaggtaac ttactcatcc taggttttca gacatacaat 7500 tttcagtcat ctttctcacc aaatctgatt actgccattc gtaaactgac atgggtaaac 7560 agtgctgaaa ccaaccacca ccctgtcatt tgggatcagg gaaaagcagc tgctgagagt 7620 acagtaattg cagttcctga acataagaaa ctcaaggata ttaagtacct ccatcctttt 7680 gaaaataagg tgccctctac tcggctaaac ctttcagtcc taaggtttat cacaggttca 7740 taactgttca cttcaattac attgtttaca gaagaaggaa tggcttgtca tcgtaaaggt 7800 gctcaagatt gatagctcat ggtggtacaa cgcatgcaaa aaatgcctta ggacaaccaa 7860 accacacggt gacacataca agtgcaccaa taattcctgt gacaacatag gatcgcctac 7920 cccaaggtca gctcttatac gtctctccct gtttttgtta aggtcctgct agacacctta 7980 tgtttagcga tcttaaaawg ttatctatat gcgtaccaaa acgttttcas tttaaacaca 8040 ctgtaagcat gatagacana gaccaacttt acccctttca gtgcttgccg tagatatgag 8100 aagcctkgta aagcataagt aacagaaatg cagarataca taggtattga gttgatgtca 8160 gacatataaa tatgccctaa tagttcattt gattcattta acaggtatgc ataayattag 8220 gacaggagca atagtcctgt gccagttttt acttacaaat gaaatagtta gtagatatgg 8280 ctgcwtgatg tccgactaaa gcaataagaa tgactayctt ggaaatttgt ccagcacatg 8340 atagatgcat tcatgctacc acttatacta tttcgatgag actaagtggt ttaattttag 8400 catatctttt atttgagttg ctcyccagta gcaaaaggcc tagatattcc mtaatttgtt 8460 gtgtctacca atmgaaccac tttggggagg cgcaaattgt agctgttagc tgaaaataac 8520 gctgacagag gagagttttt tttctttggg caaatgaacc cgagcctctc taaaaggaaa 8580 ctagacacac tcatcacgac caatttaccc agttgcattg caagaaaaat cacagagttg 8640 ctggagaagt cttgtgagta gtatcttagc tttagtgaag tgctgaacaa gtctttagtg 8700 gctgtaatgt ttgcttcaaa ctgaatccta taaacacagy atatgggtgg tggcaaattg 8760 tttgtccgac aacagtgtca ttgcagcctt tgttggwgac tgacttacct tacactttcg 8820 cattagatga agccacatgc ttccagctac aacgtctcca ttcgggacac tgccctgtay 8880 cttagtttaa ttcagattaa aaaagagtca gcgacacatc atagtttctc aatatccatt 8940 ttatcactgc ttgtttattt ctgtgtagat ggcctatgyc agtttktgca agtgtgcttg 9000 ttttgctgat atagctgaaa gaaaagtcgt gaaagcaaac tatggcaast araggagacm 9060 tttagtgtct rggacaaaat ttagawctaa attgaactaa gggtttcacc gtctacagat 9120 tycatgttta gtgatgtcca acaatcaaac crctctgtgc aggtacaaga tatccctcac 9180 cgctgaagac gacactgaca ccgccgagtt tatcttcttt ggacgratgg cgcagcgcct 9240 cattaaaaaa atgtggacrc cctcatmtcg actaatccac cyggtttcat tccaagagaa 9300 attacaaatc tactggaaaa gtctttcgag tggaatgtta gcttcactga aagcacaatt 9360 atttatagca gtgtttcctt ccaagtgaat gctataaayg cagaaatcga tggtggcaac 9420 atacttccaa ctacatcgtc ctcacagcca tcrtcgacca tactatckca aggtmaagca 9480 tttccccctt ctgactgagt atgtttcttt ttgagtgcag gtcttttcac tgcaccctct 9540 ccccatcaac tgcarctctt gtggctctaa cctgtttttt tctgcctgct aactccgcag 9600 caggacaagg atcaggtgtc acacaaaaca agggggctgc cttcatccgc gagccgtcgc 9660 taacaccaga gagtcacaaa gtttcgtcta gcgccaaggt kcgctgttgt actcaatgga 9720 aaaaaatagc tacaatataa agcatcgttc tccttctata tacactaaga aacaagccct 9780 acacatgtct tttckttgca gtgtaacata cagacaaccc cacatcaggg agacaatctg 9840 ctgctaggaa cagaaattat cmcttctccg cctaacgtgc agrcgccatc aggagctgct 9900 tacagtgtgc tagatgggtc tacaaacaag actcacaaaa gtgttaccgg aaaaaggtta 9960 gcttcatgcc aagcaatcta cctacactat tattcccata tcatgtcatc acttttacat 10020 gcatgccatg ggaccaaact ttacataggt ctcgcacatc accttccaag aaggttgcca 10080 agaaactttt tagagatgaa ggcacaggag atgacgatgt tgctggttcc gcagacgttg 10140 atgctgagta acggtatgtc caattctccc ctacaacttc atgagatata tgcttccaag 10200 tgttccaatt gcatgtagta taaggcagtg ggtactaggc aaatcaaaag cccaatgatc 10260 agtartaact acttttataa tacaatacat tcatamakwg gaacaacatt caaagcaaga 10320 tccagattaw caatatttca agcaagcatt ctaaaactaa cagmaggtmm awagagrgtg 10380 wacaatakat aamccagatc ktggtatcta catataaaca aaatagaaat tagcaagttt 10440 tmagaaaaga ggtcaatagg atacatcata caagtsaaaa aaattgatag tcaaatgatt 10500 ttgaatggat taccttcata aacatttagg tmgagctcta ccgaaaataa ttagacatta 10560 tatttgagat tgcaatgctt gccaaaactt gttaattgat tgctaccctt ttttagttgc 10620 agtgcttttg gacacgagca ccaccagcta tggaggcccg cttttgggaa ctgaggatcg 10680 cttttgggaa ctatcccagt tcatctaggt tactcttaga acttccccct gctgtgcagg 10740 gagtatggtt ttatgcttgt aagatatgag cagcgctatg ctgtgtgctt gactgcaaga 10800 tatgcctttt ggtgcttggt cataactatg ctatgcgtgc aatcttgcga ggaccatact 10860 cgcgatatgt aaagcatgcc tatgtagtct aggcctgaac aaaacattgc ttcccttggt 10920 gcttctacta tttctctttg tcgttctgtg ctactaccag ccatctattt gtcgttagta 10980 tgtaaagcgt gccaatagag tccatttgtt ttccttagcc attgagattt atctattatc 11040 tgttactatg agctatgtat ttatcttata gtacaggaaa tagacatcgg agcagctcct 11100 atgttccatt gaaggacgaa ggcaattcaa ttctgaatga taagaaaaat accaaggtat 11160 atcatgtaac ccatccttga atttcagatt gcctttatt 11199 // ID TAR1 repbase; DNA; GRAS; 3631 BP. XX AC AB008772; XX DT 30-MAY-2000 (Rel. 4, Created) DT 30-MAY-2000 (Rel. 4, Last updated, Version 1) XX DE TAR1 is a copia-like LTR retrotransposon, a partial sequence. XX KW LTR retrotransposon; COPIA superfamily; endogenous retrovirus; KW TAR1. XX OS Triticum aestivum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RP 1-3631 RA Matsuoka Y. and Tsunewaki K.; RT "Direct Submission."; RL Direct Submission to EMBL/GenBank/DDBJ (10-NOV-1997). Yoshihiro RL Matsuoka, Fukui Prefectural University, Department of Bioscience; RL Matsuoka-cho, Yoshida-gun, Fukui 910-1195, Japan RL (E-mail:matsuoka@fpu.ac.jp, Tel:81-776-61-6000(ex.3616), RL Fax:81-776-61-6015). XX DR GenBank; AB008772; Positions 1 3631. XX SQ Sequence 3631 BP; 1024 A; 674 C; 897 G; 1036 T; 0 other; gtcgacctgc aggtcaacgg atcattgggc tcctagttgc cctaatcgct atgacaagcg 60 tcatcctagg aaaggcggca agaccgctaa tgttgtcatt ggagacactg acatgaagga 120 tgctgggtat ggtatattcc ccactattct ttcagtatgt cattctccta attggttgat 180 tgacacgggt gctaatgtgc atgtatgcgg tgatatttcc atgttttcgt cttatcaggc 240 cgcagggact tcaaccgtgc taatgggcaa cggttcaagt gcttctgttc gtggtgttgg 300 cacggtcgat ctgaagttta cttcggggaa gatcgtgcgg ctgaggaacg tgcattatgt 360 cccctccgtc aataaaaatc ttgttagcgg atctcttctg tgtagagatg gctataagct 420 tgtctttgag tcgaataaat ttgtaatatc gtttatcctt atcagacgtt tgcaataaag 480 ttgttaatca tatttgcaac aatagtgaat caaatgtgtg gcattcacgt ctttgtcatg 540 ttaactttgg ttgcatgtcg cgactagcga agttgaactt aatccctagt ttcaccactg 600 tcaagggatc taagtgtcaa gtgtgtgtgc aagctaagca acctcgtaag tctcacgtga 660 ctgcggagac gagaaatctt gcaccactag aacttataca ttcagatcta tgtgaaatga 720 atggtgtttt gacaaaaggt ggaaagaaat atttcatgac gttaattgac gactccacta 780 gatactgtcg tgtgtatctt ctgaaatcta aggatgaggc tttgaacttt ttcaagatat 840 ataaagctga agtggaaaac caacttgatc ggaaagtcaa gaggcttagg tccgaccgtg 900 gtggagagta tttttccaat gaatttgatg ctttttgtgc ggaacatggt ataatccatg 960 agaggacgcc tccctactca cctcagtcaa atggggtggc cgaaagaaag aaccgtactc 1020 taactgattt ggttaacgcc atgttagaca catcgggtct ctccaaggca tggtgggggg 1080 gaggcgatat tgactgcttg tcatgtccta aaccgagttc ccacaaagaa caaagagata 1140 gctccattcg aggaatggga gaagaaaagg ttaaagctct cttatctgcg aacctagggt 1200 tgtttggcga aagtcgatgt gccaatccca aagaagcgga agctgggacc aaaaactgtg 1260 gattgtgttt tcctgggata tgcttttcat agcataggct atagattctt ggttgtaaaa 1320 tctgaggtat ctgacatgca tgtcggtacg atcatggagt cgaatgatgc gactttcttt 1380 gaagatatct ttcccatgaa gaatatggct acctcatcta atcaggagat gcctagttca 1440 tcgaatcagg aaccggttac aattactgaa cctgccattt tgatggaaca ctttgaaagt 1500 cctgtggagg agaacaatga agttcctact aggagcaaga gacagaggac tgcaaagtct 1560 tttggtgatg attttcttat gtatctcata gatgacactc ccagttctat ttcggaggcc 1620 tatgcatcgg aagatgctga ctactggaag gaagcggttc gtagcgagat ggattctatc 1680 ttggcgaatg aaacctggga gataactgat cgtccttatg ggtgcaaacc tataggatgc 1740 aaatgggtat tcaagaagaa gcttaggctt gatggtacta tagaaaagta caaggctcgg 1800 ctcgtggcta agggttatac ccaaaaggaa ggtgaagact tctttgatac ttactcacct 1860 gtggctcgac tgaccactat tcgagttcta ctttcactag ctgcctcaca tggtcttctc 1920 attcatcaaa tggatgttaa gactgctttc ctaaatggag agttggatga ggaaatttat 1980 atggaacaac cagatgggtt tgtaatagat agtcaggaag ggaaagtgtg caagttgctg 2040 aagtctttgt atggactcaa gcaagcaccc aaacagtggc atgagaagtt cgaaagaact 2100 ttaacaactg caggctttgt tgtgaatgaa gctgacaaat gtgtgtacta tcgccatggt 2160 gggggcgagg gagttatgct ttgcttgtat gttgatgaca tactgatttt cggaacaaat 2220 ctgaatgtta ttaaggaggt caaggatttc ctatctcgtt gttttgagat gaaggattta 2280 ggagtggctg atgtcattct gaacatcaag ttgttgagag atgatgatgg tgggattaca 2340 ttgcttcaat ctcactatgt ggaaaagatc ttgagtcgct ttggctatag tgactgcaag 2400 ccctctccaa caccatatga tgctagcgtg ctgcttcgaa agaatcaaag aattgctaga 2460 gatcaattga agtattctca gattattggc tcgcttatgt acttagccag tgctacaaga 2520 cctgacatct cttttgctgt tagcaaactg agtcggtttg tttcaaaacc aggagatgtg 2580 cattggaaag ctctagagag agttttgcgt tatttgaaag gcactgcgaa ttatggaatt 2640 cactacactg ggcatccaaa ggtgcttgaa gggtatagtg actcaaacta gatctcagat 2700 gctgatgaga taaaggccat gagcggttat gtattcactc atggaggtgg cgctgtttct 2760 tggaagtctt gcaagcagac catcttaacg aggtcaacaa tggaagcaga actcacggca 2820 ctagatacag ctgcggtcga agcagattgg cttcgccggc tcttgaatga cttgccggtt 2880 gttgagaaac ctgtaccggg tatccttatg aactgtgata atcaaactat gatcacgaaa 2940 gtgaacagtt caaaggacaa catgaagtca tcaagacacg ttcagagaag gttaaagttt 3000 gtcagaaaaa tgaaaaactc cagagttatt gcattggatt atgtccaaac gtctaaaaat 3060 ctggcagatc cttttactaa gggtctatca cgtaatgtga tagataatgc atcgagggag 3120 atgggtatga gacccacaat atgagttgtt cacagtggta acctattctt tgtgatcgga 3180 gatcccgtga attagatgtg gaagacaagc tgttggtcaa ctgggaggag agtattccta 3240 ctgataaaat accactccat gaagatgcaa tactctccta atctgcatgg caggttgatg 3300 tatatcttaa tatgttctaa gtggctcttt gaagcagaga tgttgtcttg cagaacatct 3360 tttgaagaac gcacctatat gagtctgatt gttaaacgtc acaatctatg agagtagggt 3420 tctctctagt aaactcatga aaggtcacgg agtatgacgc ataagctcca cccgcgggga 3480 agacccacgg tagccacgta tcggtcaagg ctttatgtga agctagattc gcagaaaact 3540 tgcagttcaa ggcccagtcc actgttcaag ttgcttacta gtgtagcata gagttctagg 3600 tggaagttca acttaacagt ctccactgca g 3631 // ID XILON1_ZM_LTR repbase; DNA; GRAS; 2707 BP. XX AC AF448416; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Zea mays retrotransposon XILON1_ZM_LTR, long terminal repeat. XX KW LTR Retrotransposon; Transposable Element; Long terminal repeat; KW retrotransposon; target site duplication; XILON1_ZM_LTR. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-2707 RA Fu H. and Dooner K.H.; RT "Intraspecific violation of genetic colinearity and its RT implications in maize."; RL Proc. Natl. Acad. Sci. U.S.A 99(14), 9573-9578 (2002). XX DR Genbank; AF448416; Positions 999 3705. XX SQ Sequence 2707 BP; 525 A; 779 C; 591 G; 812 T; 0 other; tgtaacgccc cgaattttgc agttgaattt tttcttttct ttactcgcca aaattcgggc 60 gttacctttc cttttctttt tccctcgcta aaccttgacc ttttccaaag ttctagcggg 120 attcggtttg gatttcccgt gtaagaaaaa ccctaaatgc tttatgttgt ttgatgcacc 180 atgccgaacc ttgcatttcc tttgattgct ttgaaagtgc aaatgcattc atgtagaaga 240 atcggatttc gaaaatgttt tctttctctt ttctttctct tttctctctc tcttcctttt 300 ttgtttctct ctcccgcgcc gtggccgacc ccggccggcc cagccgcccc tgcgcgcccc 360 ccccctggcc caataggccc aaccgccccc ccccccacct cccctttttc cccaaaccct 420 ctccctctcc ctctcatttt ctctcatttt ctctccctct ccctaagccg ccgcccctac 480 ccctgcccta agccgccgcc gccccctgcc caaccgccgc cctcggccgc ccctgccgcc 540 ggccgcccct cgccgtcgcg cccctccccg gtgagctccc cctccccctc tcctccctcc 600 cccatcccct ctcccctttc cccatgccgg ttcggccgcc tccctgcccg ccggttcggc 660 cgccccgccc cccggctcgg ccgccccctg cgccgcctcc ctgcccgccg gttcggccgc 720 cccgcccccc ggtcggccgc cccctgcgcc gcctccctgc ccgccggttc ggccgccccg 780 ccccccggtc ggccgccccc tgcgccgccc cctgccccgc cggttcagcc gccccgcgcc 840 cgcgccccgc ctagggccgg ttcaaccgcc ctagggccgg ttcaaccgcc cccccccttc 900 tgtttttttt atttttttta ttttatttta tttactttct gtaatcataa ttactgtatt 960 ttaagtaggc taatcactgt tcatgctatg ggaaaatagg aagtttaatt taaaattccg 1020 ttatgctatt gatgcacgta gttaattgtt taccctgtgc aatgttgatc aactaaaagt 1080 gattaggttt ccattagtgt atatgtaaca gaattctttt gttaaaaacc aattgtgtca 1140 ttagtgcata agatttaacc ccccctgcga gacctttccc gtttctttct aaccataaca 1200 aatgcgttat cgaatgtcat acttgatgca tattcgcttt atttgttatc ttgtatggtg 1260 tactgttctt ttgtattaaa tatgtggatg tatgtatgta tgtttgcgct cgcatagaga 1320 acggtccggt cgaagagccc gaggaattcg caggagaagc ccctgagcag cagtcgtttg 1380 gtggaggcaa gtgtcctttg acctatctat gtcctattca ttctttaatt cacctcccgc 1440 tttacacatt tatacctaag gattgactag cttttgttat ccatgtcctt gtttacctat 1500 ttgggtcgga ttattactac ttagtctgat gctattgctc aactctaatc aatgaacatg 1560 atgtgattat ctatgatacg ctgttttccc gctcttcttt atgattatac ttgtggtttt 1620 caaggggact cgagcggttt ctcgagtgcc tctccgtaag gacctgttct atggatgacc 1680 gcccgggaaa acagtgcaac catgagggtg gaatggggtg cccttagctg aataattaga 1740 ggatccgggg tgtagttcac ttagccgtcg tgccgtcaat ggggctcggt gtatgcggct 1800 cgctctgcca agtttgggtt cgccccttgg ggaggagtgc ggtgcattta ggaaacctaa 1860 cgggtggcta cagccccggg gaatctttgt aaaggcttcg tagtgatgcc ctgctggatc 1920 accttggtag tgatcaatgg agagtcatga tctccgggca gaatgggaat cacggcttgt 1980 gggtaaagtg cacaacctct gcagagtgtt atgaaactga tatatcagcc gtgctcgcgg 2040 ttatgagcgg ccaagggagc tccaatgatt agtggtactt gatcagagat attgtggtac 2100 aggtggcaat gagattgatg gttctggtta tgattatggt attggtaagt ggtattcttt 2160 ccgtttggaa aggatacatt gggttaataa cttgggttaa tgttaaaacc tggctttcta 2220 ctagtaagta ataacctgac caactaaaag caactgcttg acttatcccc acataaagct 2280 agtccactac agccaaacag gatacttgct gagtatgttg atgtgtactc acccttgctc 2340 tacacaccaa accccccccc aggttgtcag cattgcaacc actgctcagg cgaagatgaa 2400 gctgtggaag gagacttcca ggagttccaa gattacgacg agttctaggt gtgggttagc 2460 ggcaaccccc agtcggctgc ctgtgaaggc cgcgttatct acgtttcttt tccgcacttt 2520 gatttattgt aagaactata tggacgtctc agacgtatga tgtaatcgac tattatttcc 2580 ccttttaata ctattttgag cactgtgtga tgatgtccat attatgtaac tgctgtgtac 2640 gtgaataact gatcctggca cgtacatggt tcgcattcgg tttgccttct aaaaaccggg 2700 tgtgaca 2707 // ID WIS2_TM_I repbase; DNA; GRAS; 5177 BP. XX AC AF339051; XX DT 16-OCT-2002 (Rel. 7.09, Created) DT 16-OCT-2002 (Rel. 7.09, Last updated, Version 1) XX DE Triticum monococcum copia-type retrotransposon, WIS2_TM_I, DE internal region. XX KW Copia; LTR Retrotransposon; Transposable Element; KW COPIA superfamily; TREP96; WIS-2-1A; WIS2_TM_I; internal region; KW target site duplication. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RA Echenique V., Stamova B., Wolters P., Lazo G. and Dubcovsky J.; RT "Frequencies of Ty1-copia and Ty3-gypsy retroelements within the RT Triticeae EST databases."; RL Theor. Appl. Genet0-0 (2001)In press. XX RN [2] RA Dubcovsky J.; RT "Direct submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AF339051; Positions 2489 7665. XX CC source 1. .5177 CC /db_xref="taxon:4568" CC /organism="Triticum monococcum" CC /strain="DV92" CC /clone="BAC clone 60B2" CC misc_feature 2077. .2433 CC /note="nonfunctional protease due to mutation" CC misc_feature 2484. .3378 CC /note="nonfunctional integrase due to mutation" CC misc_feature 3678. .4673 CC /note="nonfunctional reverse transcriptase due to mutation" CC primer_bind 5161. .5174 CC /note="PPT" CC Internal region of copia-type WIS2 retrotransposon. CC 5bp target site duplications. XX SQ Sequence 5177 BP; 1573 A; 893 C; 1234 G; 1477 T; 0 other; gtggcatcat gagctaggtc tattgcgtag attctatgca cgagtagaac acaaagtagt 60 tgtgggcgtt gattttgttc aatatgcttg ccgttactag tattatcttg attcggcggc 120 atcgtgggat gaagcggccc ggaccaacct tacacgtact cttacgtgag accggttcca 180 ccgacaaaca tgcactagtt gcataaggtg gctggcgggt gtctgtctct cccactttag 240 ttggatcgga ttcgatgaaa agggtcctta tgaagggtaa atagcaattg gcatatcacg 300 ttgtggtctt tgcgtaggta agaaccgttc ttgctagaaa cccatagcag ccacgtaaaa 360 catgcaaaca acaattagag gacgtctaac ttgtttttgt agggtatgct atgtgatgtg 420 atatggccca aaggatgtga tgaatgatat atgtgatgta tgagattgat catgttcttg 480 taataggaat cacgacttgc atgtcgatga gtatgacaac cggcaggagc cataggagtt 540 gtcttaatct atttatgacc tgcgtgtcaa cataaacgtc atgtaattac tttactttat 600 tgctaaccgt tagctgtagt agtagaagta atagatgacg tgacaacttc aagaagacac 660 gatgatggag atcatggtgt catgccggtg acgatgatga tcatggagcc ccgaagatgg 720 agatcaaaag gagcaaagtg atattggcca tatcatgtca ctatttgatt gcatgtgatg 780 tttatcatgt ttatacatct tatttgctta gaacgacggt agtaaataag atgatccctc 840 acaacaattt caagaagtgt tctcccctaa ctgtgcaccg ttgctacagt tcgtcgtttc 900 gaagcaccac gtgatgatcg ggtgtgatag atccttacgt tcacatacaa cgggtgtaag 960 acagttttac acatgcaaaa cacttagggt taacttgacg agcctagcat gtgtatagac 1020 atggcctcgg aacacagaag accgaaaggt cgagcatgag tcgtatggta gatacgatca 1080 acatgaagat gttcaccgac gttgactagt ccatctcacg tgatgatcgg acacggccta 1140 gttgactcgg atcatgtaat cacttagatg actagaggga tgtctatcta agtgggagtt 1200 cataagatga acttaattat cctgaacata gtcaaaagga ttttacaaat tatgtcgtag 1260 ctcgcgcttt agttctactg tttagatatg ttcctagaga aaaattagtt gaaagttgat 1320 agtagcaatt atgcggacta ggtccgtaaa ctgaggattg tcctcattgc ttcttagaag 1380 gcttatgtcc ttaatgcacc gctcagtgtg ctgaacctcg aacgtcgtct gtagatgttg 1440 cgaacatatg acatacacgt tttgataact acgtgatagt tcagttaaac ggtttagagt 1500 tgaggcacca aagacgtttt gaaacgtcgc gaaacatatg agatgttttg agggctgaaa 1560 tttggatttc aggctcgtgc ccacgtcaag aggtataaga cctccgacga ttttcttagc 1620 ctacaaacta aggagaaaag ctcaattgtt gagcttgtgc ttagattgtc tgagtacaac 1680 aatcatttga atcaggtggg agttgatctt ccagatgaga taatgatgtt tctccgaagt 1740 cattaccacc aagctgctag agcttcgtga tgaactataa tatatcaggg acatatatga 1800 tgatccttga gttattcgcg atgtttgaca ccgcgaaagt agaaatcaaa aaaggagcat 1860 caattgttga tggttggtga aaccactagt ttcaagaagg gcaagggcac aaagggatac 1920 ttcatgaaaa agcaattcag ctgctgctct aatgaagaaa cccaaggttg aacccaaacc 1980 cgagactaag tgcttctgta ataaggggaa tagccactgg agcagaatta ccctagatac 2040 ttggtagata agaaggctgg caaggtcgat agaagtatat tggatatgca ttatgttaat 2100 gtgtacttta ctagtactcc tagtagcacc agggtattag ataccggttc ggttgctaag 2160 tgttagtaac tcgaaataaa agctacggaa taaacggaga ctagctaaag gtgagctgac 2220 gatatgtgtt ggaagtgttt ccaatgttga tatgatcaag catcgcacgc tccctctacc 2280 atcgagattt gtgttaaact taaataattg ttatttggtg tttgcgttga acatagacat 2340 gattggatta tgtctattgc aatacggtta ttcatttaag gaggataatg gttactctgt 2400 ttatttgaat aataccttca atggtcttac acctaaaatg aatggtttat tgaatctcga 2460 tcgtagtgat acacatgttc atgccaaaag atagtaatga tagtaccacc tacttgtggc 2520 actgccacgt aagtcatatc ggtatagaac gcatgaggaa gctccatgtt gatggatctt 2580 taggctcact catttttgaa aagtttgaga catgcgaacc atgtctattg gtgtttatgc 2640 atgaagaaac tctatgcaaa tggaccgttt gaactcactt gattttgaat cacttgagac 2700 atgcaaatca taccacatgg gcaagatgac tgaaagcctc gggttcagtc aaatggaact 2760 agaaagcaac ttgttggaag taatacattt tgatgtgtgc agtccaatga gtgctgaggc 2820 atgtagtgga tatcgttatg ttcttacttc acagatgatt tgagtagatg ttgagtatat 2880 ttacttgatg aatcacgtgt ctgaattatt gaaaggttca agtaatttca gggtgaagtt 2940 gaaagatcgt cgtgacaaga ggataaagta tctatgatat gatcatagag atgaatatct 3000 gaattacgag tttggcacaa aattaagaca ttgtggaaat tgtttcacaa ctgatacagc 3060 ctggaacacc atagtgtgat ggtgtgtccg aacatcataa ctgcacccta ttggatatga 3120 tgcataccat gatgtctctt atcgaattac cacgatagtt tatgggttag gcattagaga 3180 caaccacatt cactttaaat agggcaccac gtaattccga taagatgaca ccgtatgaac 3240 tatggtttag agaaacctaa gctgtcattt cttaaaaggt ttggggctac gacgcttatg 3300 tgaaaaagtt tcaggctgat aagctcgaac ccaaagcgga taaatgcatc ttcataggac 3360 acccaaaaca gttgggtata cctcctgtct cagatccgaa agcaataagg gattgtttct 3420 agaatcgggt cctttctcga ggaaaagttt ctctcgaaag aattgagtgg gaggatggtg 3480 gaaacttgat gaggttactg aaccgtctct tcaactagtg tgtggcagag cacagaaatt 3540 gttcctgtgg cacccacacc aattgaagtg gaagcttatg atattgatca cgagacttcg 3600 gatcaagtca ctcccaaacc tcgtcggatg acaaggatgc gtactacttc agagtggtac 3660 ataatcctgt cttggaagtc atgttgctag acaacaatga acctacgagc tatggagaag 3720 cgatggtggg cccggattcc gataaatggc tcgaggccat aaaatccgag agaggatcca 3780 tgtatggaaa caaagtgtag actttgacag aacagctcga tggtcgtgag gctgttgagt 3840 atagatggat tttaaaggaa gacggacaat gatggtaaat gtcaccatta agaaagctcg 3900 acttgtcgtt agaagtttcc cgacaagttc aaggagttga ctacgatgag actttctcac 3960 tcgtagcgat gctgagagtc tgttggaatt atattagtga ttactgcatt atttatgaaa 4020 tcttgcagat aggatgtcaa gagattgttt cctcgacgat tttcttgagg aaaagttgta 4080 tgtgatacaa ccggaagttt ttgtcaatcc tgaaatatgc taataagtat gcaaagctcc 4140 agcaatcctt ctaaggactg gagtaagcat ctcggagttg gaatgtgtgc tttgatgaga 4200 tgatcaaaga ttttggtgta tacaaagttt atgagaaact tgtatttcca aagaagtgag 4260 tgggagcact atagaatttc tgatgagtat atgttgttga catattgttg atcagaaatg 4320 acgtagaatt tctggaaagc atatagggtt atttggaaaa tgtttttcaa tggaaagcct 4380 ggattaagct acttgaacat tgagcatcaa gatctatgag gatagatcaa aacgcttaat 4440 ggtactttca aatgagcaca taccttgacg tgatcttgaa ggtgttcgag atggatcagt 4500 caaagaagga gttcttgcct gagttgtaag gtatgaagtt aagacttaaa gctcgaccac 4560 ggcagaatag agagaaagga cgaaggtcgt cccctatgct taagacgtag gctctacagt 4620 atgctatgtt gtgtaccgta cctgaagtgt gccttgccat gagtcagtca aggggtacaa 4680 gagtgatcca agaatggatc acaggacagc ggtcaaagtt atccttagta acaagtggac 4740 taaggaattt ttctcgatta tggaggtggt aaaagagttc gtcgtaaagg gttacgtcga 4800 tgcaagctta acacctatcc ggatagctct gagtagagat accggatacg tataatggag 4860 caacaattta gaatagctcc aagtagaaca gttatttgga atagctccaa atagaacgtg 4920 gtagctacat ctaggagatg acatagagat ttgtgaagca cacacggatc tgaaaggttc 4980 agacccgttg actaaaacct ctctcacaag caacatgatc aaacctagaa ctaattgagt 5040 gttaatcaca tagtgatgtg aactagacta ctgactctag taaactcttg ggtgttagtc 5100 acatggcgat gtgacctgtg agtgttaatc acatggcgat gtgaactaga ttattgactc 5160 tagtgcaagt gggagac 5177 // ID EnSpm-14_ZM repbase; DNA; GRAS; 19404 BP. XX AC . XX DT 19-SEP-2008 (Rel. 13.1, Created) DT 19-SEP-2008 (Rel. 13.1, Last updated, Version 1) XX DE EnSpm element from Zea mays. XX KW EnSpm; DNA transposon; Transposable Element; transposon; TIR; DNA; KW CACTA; DTC_Norman_consensus-1; EnSpm-14_ZM. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-19404 RA Bao W. and Jurka J.; RT "EnSpm element from Zea mays."; RL Repbase Reports 8(10), 1195-1195 (2008). XX DR [1] (Consensus) XX CC The consensus sequence was built from several copies. This CC composite element contains Copia sequences (7226-10783). CC This sequence was derived from sequence data generated by The CC Maize Genome Sequencing Project. XX FH Key Location/Qualifiers FT CDS 1304..3562 FT /product="EnSpm-14_ZM_1p" FT /translation="MVVFCSSVGMDIGLVKRLLRYSKGSDPYLAGVEKFLE FT FAFKDKPEGIKIYCPCQTCVHTTVQTRDDMYGHLVCNGILENYDEWNFQGN FT VSVQHTSSLEPNSNIDERYVNIDQLIQDAVGHLYDDTPMTDGQESVQGPNI FT EAQQFYKQLEDSKRPLWIGCELTQLTLFVLLFNIKSMNKWSNKSFGDLLEV FT LHMAIPNGNELPKNFYEAKKIISKFGLGYKNIDACPNNCQLYWKEKKNDDF FT CAICKVSRWKDKDPTSVLTKKERKKATPCKVLRYFPIKERLKRMFMCRETA FT SLLRWHDEERIKDGALRHPADAPVWKRFDEKFLGFAAESRNIRFGLATDGF FT NPFGMMSSTHSCWPVILVVYNLPPWLCMKDHNLMLSLLIPGPKSPGDRIHV FT FLEPLLDDLKELFLTGLYTYDASRDESFTMRGAVLMTISDLPGLGMLASHM FT VHGKFACPPCGENVWTKQLKNGRKSCFMGNRQYIDLDHSYRLDADSFDGTI FT ELRTKPKTYYDRPILDEIITLGDFKNSKTYKSVSSLFKLPYWDDNILRYNL FT DVMHIEKNVFDNCYGTISNLDGRTKDNLQARLDLVEMNIRPDLHPQEKPSG FT KFYLPPALFAMSKSERRAFCDFLRKVKVPDGYCRNISKCVNVTEGKIVGLK FT THDCHVLMQQLMPIGLRGLLPDDITAVIFELSAYFRGICSKVLHVNELDHM FT EKSIGITLCKMEMIFPPGFFTVMVHLVVHLATECKLGGPVNYRWMYFIERY FT IF" XX SQ Sequence 19404 BP; 5504 A; 4168 C; 3843 G; 5877 T; 12 other; cactacaaaa caaaccccct tatggcaacg tatacctagc aacgtatagt tatatgtgtt 60 ggaagtgatt aggttgcaac acttgttaca tgttgcaagc cacattcgtt aataataatg 120 gtactagcaa cgtttaacat gcgttgcaaa ctgcatccgt agagtaacta cgatcacgac 180 aacgtttacc atgcgttgca accgtatgcg tagagtaatt tgaatggtgg caacatttac 240 atctgttgag taattttggt actgatgagg caataatgaa actgtgttgt ttattttttt 300 aatgaagcat agtggtatga tacttaattg tgcaaaaata tagaatgaga aattgaacaa 360 caaacatgta gaatgtaaca aaaggcaacc aactcaagta tgaagtcctt ttggtccact 420 tttgtattgg tgttttattt tattaaaata tttgttgcat cctttttgtg attttactta 480 tcaaacaccc tctagccatg tgaaaatagt agttgcgatt tgtcaaggca cttaaagtta 540 tatatttttt gtaattttgt ttattcggca aaaaagagct taaagtttta tatttgttta 600 ttcggcaaaa aaaggccttc agcagccttg aactcaagac caactgttca acattaacac 660 cagctaacca acagacccta gtagatttgt atgtatggat ggcacttcag tttcttataa 720 caattcttgc aatccgctcg gcctccctag atccttggaa gaccaacaat tccgcgctgg 780 atcccagaaa tccacgctgg actcggcctc cctggatccc agaaatccgc gcctccattt 840 tctggccgcg tccggctgcg cctgccaagc tcgctgtgtc cattttctgg ccacgcccgg 900 cgccgcctgc caagcccgcc cacacggcca cacccaagca cctataggcc gccagccaca 960 ccaacgccct gctggccgct gcgcaccacc gcctcctcaa aagtcagcgc gcgccttctg 1020 taggacagcg agaggagacg aggaatagga tcgcgccggt gtcccacagt gaaggacgtg 1080 atccccacga cttcattaag gcctactccc cgccacaagc gctcaggcaa ggtatccctc 1140 tcattcccca tggagatatt ggtgtgctgt gtagacatca ttatgtgctg aaactgacta 1200 ctcatttact caatggagtt accaatgtct caaagatagc tatctatgaa ttttggatca 1260 atgtattgta gttacgtttg gagaaataaa catatgtaga tgaatggttg tattttgttc 1320 cagtgtcgga atggatattg gcctggtcaa gcgtcttctg cgttactcta aaggttctga 1380 tccatatcta gctggtgtag agaaattcct tgaatttgca tttaaagata aacctgaagg 1440 tatcaagatt tattgtccat gccagacatg tgtgcacact actgttcaaa caagggatga 1500 catgtatgga catttggtgt gcaatgggat acttgagaat tatgatgaat ggaattttca 1560 aggtaatgtt tcagtgcaac acacaagtag tctagaacca aattcgaata ttgacgaaag 1620 gtatgttaat attgaccagc tgattcaaga cgccgttggt catttgtatg atgatacacc 1680 tatgactgat ggtcaagaat cggtccaggg acccaatata gaagcacaac aattttataa 1740 acagcttgaa gattcaaaaa ggccattatg gataggttgt gaactcacac aactaacttt 1800 atttgtgctt ttgtttaata tcaagtccat gaacaaatgg tcaaataaat cttttgggga 1860 tctacttgag gttctgcata tggctattcc taatggaaat gaactgccca agaactttta 1920 tgaggctaag aaaataatat ctaaatttgg acttggatac aaaaatattg atgcctgccc 1980 aaacaactgc cagttgtatt ggaaggaaaa gaagaatgat gatttttgtg caatctgtaa 2040 ggtttcgagg tggaaggata aggatcccac gtctgtatta acaaagaagg aaagaaagaa 2100 agcaacaccc tgcaaagttt tacgatactt tccaattaaa gagaggctga aaagaatgtt 2160 tatgtgtaga gaaacagctt ctcttctaag atggcatgac gaggagcgca ttaaggatgg 2220 tgcattaaga catcctgctg atgcaccggt gtggaagagg tttgatgaaa agttcctagg 2280 atttgcagca gaatcacgta atattcgttt tggtttggct actgatggat ttaatccatt 2340 tgggatgatg agctctacac atagttgttg gcctgttata ttggtggtat ataaccttcc 2400 tccatggctt tgcatgaaag atcacaacct tatgctctct ttattgattc ctggtcctaa 2460 aagtcctgga gatagaattc atgtgttcct tgagccactc ttggatgacc taaaggaatt 2520 atttctaacc ggcttgtaca catatgatgc atcaagagat gagagtttta ctatgcgagg 2580 ggccgtgctt atgaccataa gtgatcttcc tggtttagga atgcttgctt ctcatatggt 2640 tcatgggaaa ttcgcatgcc ctccttgtgg tgaaaatgtc tggacaaaac agctgaagaa 2700 tggtcgtaaa tcttgtttta tgggaaatcg ccaatatatt gatcttgatc attcttatcg 2760 cttggatgca gactcatttg atggaacgat agagcttcga acaaaaccta aaacctatta 2820 tgatcgtcca attttggatg aaatcatcac acttggtgat ttcaagaact caaaaactta 2880 caagtcagtt agtagtctat tcaaattgcc atattgggat gataatattc ttcgatacaa 2940 tcttgatgtg atgcatatag agaagaatgt atttgacaat tgttatggta caatatccaa 3000 tttggatgga aggacaaaag ataacctaca agctcgtcta gatcttgtcg agatgaacat 3060 tagaccggac ctccatccac aagaaaaacc ttcaggaaag ttttacttgc caccagcttt 3120 atttgctatg tctaaaagtg agagacgagc attttgtgat tttcttagaa aggttaaagt 3180 tcctgatggt tattgtagaa acatatcaaa atgtgttaat gttactgaag gaaagattgt 3240 tggccttaaa acacatgact gtcatgtcct gatgcagcag ctcatgccta ttggtttgag 3300 gggtcttctt ccagatgata tcacagctgt aatatttgag ttgtctgctt attttcgagg 3360 gatatgttct aaagtgcttc atgttaacga gttggaccat atggaaaaat caattggcat 3420 tactctatgc aaaatggaga tgatctttcc accagggttt ttcacggtta tggttcattt 3480 agtagtccat ctagcaactg aatgtaagct tggtggacca gttaactata gatggatgta 3540 ttttattgag aggtacatct tctaactatt acatgattca tgttataaga atttcttgtg 3600 gggttgaata attcacttgt cttgcattgg ttgtaggtac ctaggaaaat tgaaatcata 3660 tgttcggaac aaagcatatc cagaagcttc aatagcaaat tcattcttgg cagatgagtg 3720 tatggtgttt tgttctaggt acatagaagg tttcgctacc aagcataata aaccatcaag 3780 gaacgatgat agtttggacc atacccaatc gaagatggtt ggacaagatt catctttatt 3840 cccttcagta gggaaatcat tgggaaaacc agccaatttt gaattaagtc atctagagaa 3900 attgcaagcg catagatatg tgttgtacaa ttgtgatgtt gttaatccat atctaaagta 3960 agtgttttgg ttaactaatg aactatgcat atagattatg aattatataa ttatatggta 4020 atcatggtat agggaacatg cttctaatct gaaacgaaag agacgcgacc gtcgcctaac 4080 tcctaaagat attgagcaga tacagaataa agaatttcca gaatggttta gacaacatgt 4140 aagtagccta atctgatatt tatattgaat ggaatttggg ttttcttaca tgtataaata 4200 tacactcttt ttgtgtgtct acagatcttg catttagaag aaaaaaatgg acccgacagc 4260 attaacgaag acattagatg gttggcacga ggtccattgg agtttgcaag aagacataga 4320 gcatataaca tacgtgggtt cagatttagg gccaaaaggt atgataaggc gacacaaaat 4380 agtggagttg ttgtcactgc aaagacctct agctattctt cagctggtga taataagcct 4440 atacttggag atattttgta ttatggcagg attcttgata tcatagagat cgattattat 4500 ggaagatttt cagtggtact gtttaaatgt gaatgggttg atgtcactcg aggaaaggga 4560 gttaaaaagg ataagtttgg cttatccctt gtgaatttct cacatcaaat tcacagaggt 4620 gatagaattg agcatgaacc atttgtgttt gccaatcaag ttgaccaagt gttctacttg 4680 gaagatcgga cgaaccctgg gtggtcagtt gtcttgaaga tgaagcccag agatgtatat 4740 gacatgggag aagattggaa tgatgtacaa tctgaacctt ttcatgtcag caagcttggg 4800 gacctgttta agaatgcaca cgacaaccat tcatggacta gaagtgatat ggaaggcaat 4860 acggtagatg gaactgctaa agaccatgac attggtagtg atatagaaga tgagtgctaa 4920 ataagaatac tccatcaggt acacaaagtt tctctttctt ataatctgaa ccatttgggt 4980 ggtctgcaaa tacacatcta ttagtgtttg tcttccttgc ttattttaaa ttcaggtaat 5040 tatgcagtgc agaaatttag gtttcttgat ctacatatta attgaccaat gctgaataaa 5100 ccaatgctga atacacatct aatagaagca tttaagtatc aaaattttgt ctgtagtgaa 5160 tgcaaattgt tggaagcaat tgcagtagag ttatgtttta gttttttcga tggaaatcaa 5220 catggacacc agggatcatg tggctgtcaa ggtcctcgac aaggcaaagg ttcacaagaa 5280 caaactagct gaacaggtag actgtcatca agactttaac tatttgcact agtacttcct 5340 tagatttcac tgttttccat atatctgaac tgcatagcaa atcagaattt cgtttttgtc 5400 aagctgaaag aaactgtctt ctgttctgga ttcagtttat gtctgaaatc aatctgaaag 5460 aacaacttaa ttttttttca ttcctgagag gcctgcatgc ttatatgtgc tgtttttctc 5520 tttttgtagc tcaaggaatg tagctcaaag aacctgttgt tgtgcagatc tccctagcaa 5580 atacaagcct agaaagaagc attgcttgac cgcttcgacc atcggcgctg gtggcagcct 5640 ggacaaagct ccttgtcgaa gcaccaagac gacaagactc atcaacagcg agaactagga 5700 gtatagacag atggtgtgga gatctcttgt acaaatatga ggacaaattg tagggcattg 5760 aactaccgcg tagcttagtg ctgactgtta gttttggggt gcttcctttt caatgatgtg 5820 tttgctgact gttacagttg ggctaccagt ttgctaatta tcatttgtgt cgatgctgat 5880 taatgtgaac tctatgctga acaccttgta catatatgag atgttgatta tgtgcatccc 5940 agcgtactcc catcagcagt tgtcatgtct tttctaaaaa ttcggaaggt gtcactctgc 6000 tgttgcttca aatctgtttc tatttgtttt ggcaagattg aaagggttga ggatatctca 6060 tccagtttcg agtgtcactt ggctgaacct tctttgctca gcccccgttt tcttttagac 6120 ttatttcgag tgtcatgaaa ctgtggcaaa tgaacccccc tttaactcag atcttcttta 6180 gcatattaca caacaaaact agtttatctt ggttatcaga acacaagcag atggcacacc 6240 attatcttca gttatgggtt ctgaaaatgg ccaggacaca cctcactact ccaagccttt 6300 taacacaagt gagcagggta taagttacag gggcccaaga gttatagtgc ttcaaagtgg 6360 ggtaaaaata caaaaattca gattcagcta tctgaaccaa attcagtttt agtaaactgc 6420 accaagtctg aaatttttga aaccgaccaa ccccactttg gaccactttt tcactcagtt 6480 gcatatggtt ttaggtctac catacttaat aaaagttgtt ctcctatagt tactcttcaa 6540 gttttctata ataacctttt gccaaaagcc cacagatcaa aagttacagg ggcccaaaaa 6600 caagcaaacc aaactatttt cagctgcacc aaaactgtac caaatctgaa atctgcaaat 6660 tactccaaat gtctatcaaa aacttgaaaa tcttcacaca tgaaagttgt ttaatttgaa 6720 acactctaca actttggtat tttgattttt ggaaaaatat ggctagattt taaattccac 6780 ttttgggcta aaccttttct tctagggtta attagatgtg tgccattaca ttttgtctgg 6840 ttttgacata tatatgtttt gtaaatagac tccacaatat tatttggatc tgcaagtctg 6900 caactttgat gagcaaaatg cctgtacaga tagatgtttc agctacttgt actagcacaa 6960 gatgaacttg tgcagattca gcatacatat gtttcagcta aaacatgaat tatcaatcct 7020 taaggtagtc tgccaactaa tgagtaatct gttgttcctc cttttctgaa ttttacacca 7080 aaatcaagtg tcccagctat gtatcttatg atcctcttaa tggcacacca gtgctcctta 7140 ccaggggctt ccataaacct gctcaccaaa cccactgcaa aggataagtc tggccttgtg 7200 tttastaggt atctcaagct cccaatcaca cttctatact gggttgatca ctctctgttg 7260 aattgcacct gcccatgttg cactgctcta caatcttggc tgcataagac ctctggcaaa 7320 tagtgatttc atttgtccct tgccttacct ccatacccaa gtagtaactg agcagcccca 7380 gatcactcat actaaaagtc ttcttcatct gttgcttgaa atctgcaatg tcacttgcag 7440 agggcccaca aatgataagg tcatccacat atactcctat aatcagcatg gacttcccaa 7500 ctccccttct gtagacagca tgttctactt tgcatctact gaaacctagg gaggctagct 7560 cagaatcyag tctaatgttc caagctctgg gagcttgttt taagccatac agtgctttat 7620 tcagtttgag caccagttgg cccttctctg ggttctgaaa tcctggaggt tgtgttacat 7680 agacttcttc atgaagatcc ccrttcaaga aggctgactt cacatccatg tgatgtattt 7740 yccagttacc ctgagctgaa agagctatca gtacccttat ggtttcaagt cttgcaacag 7800 gtgcaaatac ttcatcaaag tctattcctt ccttctgtgc atacccttta gcaactawtc 7860 tagctttgtg tttgacaatg ttaccagcag catccttctt gactttgtac acccatttca 7920 aaccaatggg tttatgccca acaggtagtt cagaccatat ccaagtgttg ttgttttcaa 7980 tggactggag ttcattgttc atagcatccc tccaacactt ttctgtcaga gctacttcaa 8040 cattcactgg ctcatctgca gccaacaagc atagcccact atattggaaa tcatgtacct 8100 cctctgttgc atcccacaga tcagttagag acctgtatct caatggtgga tgttgtgaac 8160 tttgagtgct cggggtctga ggactgttgt tagtagctgc actggaactt gacccctgta 8220 atcccccctr tgacacttgt ggtgttactg ttatttgtgg tgtcactggt gtgtgaggtg 8280 agggtggaga attttgtgca ccccctgaat cttcaacact tccacctgaa acacctggct 8340 gctgcaacac ctgaccaggc acagtgtact gaaactggaa ttcacaagga ccagattctg 8400 tctcagcttg ctgaacattt tcatcactgt cccaattcca ccccacttct tcttcaaaca 8460 caacatctct gctgatatac agtctcccag ctgaaggatc atacatcctg taccctttgg 8520 tccctgcctc atatccaagc agaaccattt ttgtggacct gtctgacaat ttttcaacac 8580 ctggaccaat cttcttcaca tgacccacac aaccaaaagt cttcaagtga ccaacttgtg 8640 gtttcttgcc atgccaggcc tcatatggtg ttctcccttg cacactctta gtaggagacc 8700 tgtttaacag gtaaactgca gttgttactg cttctcccta gaatcttggt ggcacaccct 8760 tacctttgag caggcatcta gccatctcca ctacagattg gttccttctc tcaacaaccc 8820 cattttgctg aggagaatag ggagtggtgg tgtaatgttt gattccttgc tcattgcaaa 8880 aaacattgaa ggaccctgag ttaaactctc cccctctatc tgtcctcaaa gctttcaaat 8940 tacctcccaa ctcaatttca gctctttgtt ttatcttctg tagtgatgcc aatgcctgat 9000 cctttgtgtt caacagatct acccacatat acctgctgta atcatctact acaagcagga 9060 aataggattt tccaccaact gtctttggtc tgatctgccc acacaaatct gcatgaaaca 9120 attctagtcc cttttgagct ctgaattcag acttccttgg aaatggtgtt ctatgttgtt 9180 ttcccaaagt gcatccatca cagacctrtt ccaccctgtc tactaagggc atcccttcca 9240 ccatcttcaa tctacctagt tctctaagtg acctgaaatt caggtgccca aatctggcat 9300 gccatttcca ggcaggatca gtgtgctttg ccaggaaaca aacaggtgaa tcagcatcta 9360 gtttcagagt gtacagcctg ttaccagtgc gaggtgcact gattagcagg ttattttcag 9420 gatctagtac actcaacctc ccattaaaca gtctaatatc acatccaccc tcttcaagct 9480 gaccaagact tattatatta ctcttcagtt gtgggatgta ataaacactt gtgaagactt 9540 tgtgctgatt ttgctttccc tgaacaacta gagctcccaa accacatatt ttaacagttg 9600 agccatcccc aaatctgact gatccactca cagattcatc aaggtgtgag agtgcagact 9660 ttgtacctgt catgtgatta ctggcaccag tatcaagtac ccacacgcct tcaggacata 9720 tcatcgrgat cactttttct tcagacaaat gaacaaactg tggtgctcca tgcactgtgc 9780 cttgtacttc agcaaacaga agtgccccag tttcaacacc accaccagca actgcaagat 9840 ttgcctctgg ttgtttttgt tccttgcctt tctccctctt aggacgctta cagtcttgag 9900 cccaatgacc atatatccca caatttctgc atctcccttt tctcctaggt gtgccttgtg 9960 aagtgagttt ctgcttactg aaacttcctg aactccctcc atcagatcga tggggagcct 10020 taggcttcca ctgacatgag tcactactgc tactgtcttt atttgaagac gactgaaaat 10080 gatgcttatg cttttcaagc caatcttctt cagctaacag taaacgacct gttttatcag 10140 tgatgtgctc aaccttgtct tctagtcgat cttcagcagc acgaagtctg ccaacaagat 10200 cttcaactgt aagatccttc atctcacaaa acatttcaat ggatactgct acttgattaa 10260 accggggtgg tacaacacgc aggaactttt tgaccacacg ggtatcatct atagattcac 10320 caagggattt gatatttgtg acaaggttag taattctcat cccaaaatcc tcaacactct 10380 ccccctcctt gaactctata ttctcaaatt ctctaataag tttctgcaca tttacctcct 10440 taacccgatc agcaccaatc ctcatgatct tcacagcctc ccaagcctct ttgactgtct 10500 tctttgcacc aagtgtcccc cacatctctt tgggaacaga tctcatcaga gcacccattg 10560 cttgcctgtc ctgtgaacgc ctgacgttgg ttccgggatc aatcacttcc cagatctcca 10620 tcgcctcgta gttgatctcc atcaacattg cccactctgc atagttggat cgggtcagca 10680 tgggccatac cagagaactt tccttgatgc ctgacgtcgt ggcacttggc catacccttc 10740 gaaacaatcc agtccacgaa gaagggggct cgtcagctgt catcgttgcc gagccacaac 10800 ccctgatgca acagcttcga cttcaccttg caaagcccca tcttcacccg cataccagac 10860 gccgagaatc aaaagcaacc atcgaaggcg aagctgaggc cgagacaaac ttcaatgcga 10920 cgccttcagg aagggagtga cgtcggggac gacaccgtcg cgagtccgag atggaccagg 10980 ctttcgccca aggaagaaaa tgttggggaa tacgacgccc ccaacagggg aagcggcgcc 11040 caagggcgtc gccgtcgccg aggctctcgc ccaagaagcc cccagcacca acgtcaggcc 11100 aagagctacc gtcgtcgccg tcctccatac catatgcgtc acacaggcac gtgccagagc 11160 cgcacccagc agccgatggc actagcacac acggccaccg aatctagatg tcgccgagca 11220 ccctgccacc ttacgccgtc ctggttgttt ggtccttacc ggttgtttgg tccttaccag 11280 taaggtttgt tctagtatct atacttacat gtgaagctca ctgaaccggt tgtttggtcc 11340 ttaccagtaa ggtttgttca gaacacttgt ccgtcgtcac aaaacaccat tgtggaccac 11400 cccatcatcg accgagctgc tcacggtttc tccagacaag tttaggtgag caccatgact 11460 tttgtacgcc ggtgaggctt tctgtatttc tgaattgcac gctaccgtat tcaaactctt 11520 ccggttaccc taccaggatc ccaatgtccg tcgtcgccgt gatctgggca gtctagacta 11580 tttgaatccg attcgcttac gggttaggtc gggccgggct cgggtgacgt ttaagaatgc 11640 aaatccttgc cggagataac ctgcgtgggc ttgtcgtgag cgcgcaacct cgtgcccggc 11700 ttagggtcgc cggagtcact atcgtggact tgagtttctg aataagcaaa aagacaggga 11760 tctcagtgct aatgtcagtg aaacaatcaa atattacata ggacctttat tcggttagct 11820 gatgcaacga gggtaattgc gcaaaattgc acagcgctgg cgcgggtgga tggcgcgggg 11880 ccagttttct catgtgttcg tggggcgagc gggtcggttt cggcccagtc acttccgctc 11940 aacaactcct gttttttaaa gtttatgttc tggattggtt attgtaatat ttgcaacttt 12000 gcgtgaatgg tccttggaaa tgaacgagtt catcgaaact cggcacctcg agtaagttat 12060 ccgatccact tacatatcta tccgaggcct tgagggcaag gattggtgta cgtgggcccg 12120 ataacttggt tgggttgtga cagcgatgat aaatccacta aagaagcaaa acaaatttta 12180 ttttgatata gagagagtat tataaactat acatgtgatg gttgcttcgg tagagagaag 12240 cttattaaaa ttaaattttt tatgaactat ttatggtcaa caataactca agagaggtta 12300 aatggcttgg tgattctata tatcgaaaaa aagttgttgg atgaggcttc tatatcgaat 12360 ttcgcactgg gcccctgaaa agccaggaac gaccctgctt gatctgcttc aagtgtttca 12420 tcaatttatt gcgcgacggt atcaattgaa atgtacatta atattataat tgtgtaacaa 12480 atcttccctg tattatggtt aaaatttaac aatacaagta ttttgaatta cacaatcagt 12540 ttttagcaaa atatttgaaa accatattga attaattaaa taattaaggt attattttct 12600 gtttccctcc cattatttta tttccctcca atttatttta ctgacatact atatttccct 12660 ccgttgtttt ggatccctcc agttcttttc gtagtgggcc cactctccat agacatagca 12720 aacttctttc atctcctgca gacctcccca ccacttttcc ttcatccgcg aggggcacaa 12780 cagagggctc tccatccatc gtccaggggg ctccatccgc gccgtagtcg ctcgtccagg 12840 tcgcgacccc tctctggttc gccgccccga ccttgcctcc maccgcgccc ttgcctccca 12900 ccgccatcgc cgcctccacg gccatcacca ctgcctcgtc caccggcgcc acggcccygc 12960 ccttggccgc caccgacacg tacacggcct actttcgtgg ccgtcgtcct ccgctgttgg 13020 cgcacgctga gccggaggtc ggatatctgc caagtcgagc tggagacgga ggtcagcctc 13080 tgcctacgaa tcatcatcat cagccaacag gtgctaatct gccttttttt attcagcaag 13140 agtcgacgtc agaatcttac ctcggtccat ccaaatttac ttgcatcata tgattcttag 13200 acgaccaaat tattgtcatt gattggtctg caaatacata tggactgtta gtattttcct 13260 tccctacttg tttttaattt aggtcattgt gcagtggtaa ctggtaatgg cacggggtgg 13320 gaaacaacgc attactcgta gccatgatga gtacttgtct gaggaccata ttggagagaa 13380 aagtccccaa aaaaatgctg catcatctga acaaaacata agtaataaag aagaccattt 13440 agatagcaga agcgataatg agtcccaagg tatgcacaca ttacttgtaa taccgcacct 13500 tgtctttatg gatacttgca tatgtcattc tcactactga aaattgtttt tttggagaca 13560 taactatgtc aaataacata aatggagagg accaacttga tggcgctgat gaggttaaag 13620 aggttaaaag gcgtgggaag acaaaactta ttaatgtttg gaacattcca agaggccata 13680 gggttgtagt taattgtaat gagctgaatc agcctatcgg agaagaggca ggagtccttg 13740 caaaattcct tggcatggtt gctaggaatg gctccttgtg tagcttaagc ttcaaggatt 13800 ggagactact tataggaaag aaagatagga accataaaca aatcaataag gaggccattc 13860 ttaatcaagt aaaggtaaac tttcacattt tttcagttgc catgtagtaa tagtacactt 13920 tcacaattct tttccaattg ttatgcagaa gagatttctt taccctgccc gcatggaaac 13980 atgggtgctg cgaacaattg gagagagatg gaggcaacac aagtccaatt tgaaatccat 14040 ttattttgac ccacataaga gtcaggatgc taataatagt aatgctcctg atggtgtatt 14100 agctgatcag tgggttgcgc ttgtcaataa ttggatgacc cctaaagcac aggtacatta 14160 ctatagtcat gataatcatt tcgttattta tctgatgaac catctaattt acttttgttc 14220 ctatatactc tttgtttcgt aggatttaag tgaggccaat aggataaatt gtacaagaag 14280 aaagtcaatg catacatctg gaacaaaaag ctttgctcgg aatagagaag aattggtatt 14340 atttttgcaa ttataattca cagcatgttc tttacaaatg tcaaaaatcc atgttaatta 14400 cattacctta gttatatttt tattaacatg tttacagagg gaacaagatc ctgaaaagaa 14460 ataccctcat agggctgttt tgtatatcca tacacacaag tctaacatcg gcaataacag 14520 aaatgcacat gtggtacagt aattgcaaaa aaaatgtttc atttactttt tttcaaatcc 14580 aattgttctt ccatggtgtt tattgagtat tgttattctc ttgcaagggt gaattgaagg 14640 aacttttagc acaacaacct gatttagcgg actctagtaa tggaaaggat gcatgggaag 14700 gagatgcact aaacagaata ttaggaaagg aaaagcctgg ccatatccat ggtctgggcc 14760 ttgttccaaa tccaaaacaa gtttttgatg cctcgacatc aagccgtatg aagcatctaa 14820 atgtaaccac tttggatgaa acatccagtg aagatgtagt atcacttaga cttgaattgg 14880 aaaaacttca aaagcatgtc cagaagcaag atgatactat actagatttg caacataccg 14940 tggagcgaca gaaaaggcaa catgtaaatc caaataacct tatttctaac tcactaaaga 15000 ttgcatggac ttagcatttt tatgtcctaa tgtttttatg ctattacagg gctatccaga 15060 tgctccttta tcgccaccaa cagatgttcg tcctgctatg aaacgacaag tatgtatctc 15120 tatctctatg aaaatatata agtttactac tgtacttgct cgtacaatcc agcatcgcca 15180 tgagcttatt ttaaaaaaaa tggtgatgca aatgtctttg attcggataa gttcatacca 15240 tagtaaaatt actcttcgtc tgcaaaatag caatcctact ctacaactcc tagtggatct 15300 gaaccaaaat tctcaaacca aagttctacc ctctcaactg atctgaaccg tctggacagc 15360 agcctcaaga acgttaagtt ttaaatggta agggctccct ccggtggctc tgccacttga 15420 ggcttcggct ttggcttctc aacaacaatg gcttgtgtgg ttaggaccat tccagctaca 15480 gaggccgcat tctggagcgc acacctggtc accttggcag ggtcaatcac actagctcta 15540 aaggatccag tatatgtgtc tgctgtgaca agaactagtc tgaattgtct aaaacaattc 15600 caatgccagc aacacacact acgatggtat aggtctactc atgaacttag tgccgcacat 15660 aatagatgat gggtcctagt cacatttacc agcacagata aacatattaa cagcattgga 15720 cctctagcaa atacagttca taccatctaa ctgcataggc acagataaac atatttactc 15780 ttttgcagag tgtcacttct attgaaatct tcaatattta gggtttagga cataagatgt 15840 ttttatgtcc taatgttttt atgctattac agggctatct agatgctcct ttatcgccac 15900 caacagatgt tcgtcctgct atgaaacgac aagtatgtat ctctatgaaa atatataagt 15960 ttactgattt ttttgcacat atatctgaat cttatatata tatatatata tttccctata 16020 acagcgaatt tattgtcaac ttcgtagtga agattctagt atgtttggtg aacggaataa 16080 cacaatggta tgaatgcatt accatgaatt ccatcctagt tttaaaattt tcaagctgtc 16140 atttatccaa taactctaca ggaggatgaa aacgaagatg atgagtacga ggaactgcac 16200 tcacactaca aatgttctaa aattcaggat aaggttagta cattatgagt acgaggaact 16260 gcaatcatag atttactcca ccctaaggcc atactgaagc aatcatattt ttgtccatgt 16320 tagaaatcta gtttatatga tagtgtatac atgctgaaag tagcagcaag catcagattt 16380 cctatactac gttccatagt agttcactga tgtgtgttct ttaaatgcag agcaagccac 16440 cacagtcacg acgtgaagca ctccatgcta gtagagtttc tgcatcaata aaggtaaaaa 16500 caacagtact aatgcagcca aggtgatcaa tgtggtcctt ttgaaactca gtgtastcta 16560 cacgtctcgg aaatcctcta attatgcacc aaataagaac catcaagtaa ctatttatta 16620 gtaaaaattc ttatgcatcc tgcatattta tagctacttg ctaaccacta acatccaaaa 16680 ttcacttgta ggtttccaca gatattttct taaagagcac aagatatcca aacaggaagg 16740 ttgccttagg cagagtactt agccaggacc ccaaaaccaa agttggagat gttgctttag 16800 gcaaagaatt ttggatggtg cgtgttagtc tggtatctgt gcgcgatgaa ccactaataa 16860 ggccatataa caacttcaag gttcttggac aagtaggcaa taatccaatt gcatggcctt 16920 caagttgtgt aagttcatca cttcacttaa caagacatta ttctcctcat tattgcattt 16980 ggttaaagta ttctaattca ttccttttgt agattgaaaa ggttaactga taacatggga 17040 tgaataatag cgccgggatt gctaaggtat ttaattggcc ccataaatac tctatatctc 17100 ccatgaatag agacatcaag tttgagctaa taggttagga gacatcagtg tgttagatgt 17160 acatatataa atttgggcag ggccattcat atgggaagcc ctcactgata tatgacacta 17220 ataaaaccat agtagggggg tttgtgtgac caaatcttga atgccatagc caagctgcat 17280 catctagctt tgacagcaaa caaactggag gtatcacact caactgtact gtgtacagtc 17340 tgttcccagt gcgaggtgca ctgaccaaca ggttatactc tggatcaaat actttcagtc 17400 taccagcaaa tagtctgatg tcacagcctg cttcctctag ttgtccaaga ctaattatgt 17460 tgcttttcaa ttgtggaatg tagtacacac tagtgagtac cttgtggtca ccttgtctgg 17520 ttttcatcac caccgaacct agtccacaga ttttgacagt agacccatca ccaaacttca 17580 ctgacccact gacagtgtca tcaagttgag taagtgtaga cttgtgcctg tcatgtggtt 17640 actagctcca gtgtctaata cccagacttc atctgaacag actgcagtca ctactttttc 17700 ttcagacagg agtatttcct gagaagttcc acctaatgag tcttgcacct cagcgaagag 17760 tagtgctgca ttctccacat ctccaactgc aacatttgcc tcctgctgtt tgtgatcctg 17820 cttatctctt tttggtcttt tactgtcttc tgcccaatga ccatagatgc cacagtttct 17880 gcatctccct tttcttctag gtgttccttg tgatgtcaat ttgaccttgt gaggagtact 17940 ggagctagca ccttcagatt tgttagaaac ctttgcctkt cactggtttg tccctccact 18000 attactgttc ttgtgtgaat tggactaaaa cctttgcttg tgtctctcca accattcctc 18060 ttcagctagt agcagtcttc ctgctttgtc tgtgacttgc tccagtttgt cttcaaaccg 18120 atcttcagct gcccgaagcc ttccaactag gtcttcaact gaaagtgtct tgacatcaca 18180 gaacatctcg attgagacag caacttgatt gaactagggt ggcacaactc ttagaaactt 18240 attgacaaca cgagtatctt ctaagggttc accaagtgat ttgatagaaa ttttgacact 18300 taataggaaa tataatttaa aaagttaggt ggtgtactca tctgtatttt ttactagtct 18360 ttgttttctt gcattctatg agatgcatgc tttgtaagga atatgatttg tttcgtgaca 18420 acaaaattga tagaatatgt attttaaagt ctaaattgat gactatgatg caccaggtga 18480 cactccactg gacagtcaac tccagatagg gctagacatg taacggtctc agaaagaagg 18540 ttggatattt tctttttaat tgaactgttg ttttaccttt ttccttgctt gcttttgctt 18600 ttgcagagct gatgaacttt agacgtgctt gtgcccatcc tcagcgcaaa acacagtggc 18660 aacgaaagat ttaaggatgc atgaatatgt acttcgaact ttctttgtaa taaacctggc 18720 gctcccatgt tgcggcactt actgtggagg tggagctttg ctatgcccct agctatcccc 18780 tccattcaaa ggattgtcat cgccagcgct agggataatt gcctctggtc agatttctag 18840 aaaaaatgtc cacagttgaa caaccttttt tttctcgtct gcaccctcta attagcagct 18900 tagtctcagt ctccatgttg tgtgcaatta tatatgtaac tatggatcaa ctttttgtaa 18960 tgcaactatt gattttaaat atatatattt tgcttatttg ccatgtgtgt gtggatgatt 19020 ccagaaatat caaatatgca ttgttcagct tgttgtaatc ttaacctcaa aataaaatat 19080 tcaaatattt ttattggttt attgcttgca acggataaaa atgttgctac aactcgaaac 19140 taaacgttgt agcatcctat gataacgagc tggtcttggg cggcaccaac acatgtaagt 19200 gttgttgtat cttataaaaa tctgttgcag tttaccaacg cttatttata tgacttacca 19260 acgtatgtac aagcgttgca gtagccccta gcaacggcag tataggcaac acataattat 19320 gcgttggtat agaccctagc aacgcttata taggcttgta ccaacacata tatgcattgc 19380 taaagggggg gtcattttgt agtg 19404 // ID STONOR_LTR repbase; DNA; GRAS; 560 BP. XX AC AF082134; XX DT 15-JUN-2000 (Rel. 5.05, Created) DT 15-JUN-2000 (Rel. 5.05, Last updated, Version 1) XX DE STONOR_LTR is a long terminal repeat from STONOR. XX KW Copia; LTR Retrotransposon; Transposable Element; KW COPIA superfamily; STONOR_I; STONOR_LTR. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-560 RA Marillonnet S. and Wessler R.S.; RT "Extreme structural heterogeneity among the members of a maize RT retrotransposon family."; RL Genetics 150(3), 1245-1256 (1998). XX RN [2] RP 1-560 RA Marillonnet S. and Wessler R.S.; RT "STONOR_LTR."; RL Direct Submission to Genbank (31-JUL-1998)Botany Department, RL University of Georgia, Plant Sciences Bldg., Athens, GA 30602, RL USA. XX DR GenBank; AF082134; Positions 1 560. XX SQ Sequence 560 BP; 148 A; 151 C; 141 G; 120 T; 0 other; tgttaggatg tgtcctctac actagccggt taacagtaat cggggtaggg ttaatcctaa 60 ccgtctaacc gcgcccctga tcgggggggc tatcctaacc gttggttgca gcccccggtc 120 acacgacgcc atataaatag attaaggggg ccgacgggtt tagccaacgc taatcgctcg 180 accacaaacc ctaatcgaca ctttgagagg aaccgatccc ctaggcgctc ggagtgactg 240 gaatcgctgt gactatgtct cagatccccg ttatcccatc gggatctgag attccccctg 300 caggcaacat tggaggagct gatccaccgc cgatcagcga cgggaaccaa tctcctcgac 360 accagcaggg agatcgtcaa gaaggaggag gcgggtcttc gctgcaagac accgccgcaa 420 tgatggctag gaacaacaac gacggtatgt taacctatac tcctcagtag aatagatcta 480 ctcatcatcg aagtatttta gacacggatt ggtattctag ggacttagga aacgatccta 540 agcaccagta atttctaaca 560 // ID CINFUL2_I repbase; DNA; GRAS; 7816 BP. XX AC AF049111; XX DT 30-MAY-2000 (Rel. 4, Created) DT 30-MAY-2000 (Rel. 4, Last updated, Version 1) XX DE CINFUL2_I is an internal portion of CINFUL2, a gypsy-like LTR DE retrotransposon. XX KW LTR retrotransposon; GYPSY superfamily; Cinful-2; CINFUL_LTR; KW CINFUL2_I. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-7816 RA SanMiguel J.P., Sanz-Alferez S., Jin K.Y., Springer S.P. RA and Bennetzen L.J.; RT "The Cinful retrotransposons of maize."; RL Unpublished. XX RN [2] RP 1-7816 RA SanMiguel J.P., Sanz-Alferez S., Jin K.Y., Springer S.P. RA and Bennetzen L.J.; RT "Direct Submission."; RL Direct Submission to Repbase Update (17-FEB-1998)Biological RL Sciences, Purdue University, 339 Hansen LSRB, West Lafayette, IN RL 47907-1392, USA. XX DR GenBank; AF049111; Positions 643 8458. XX SQ Sequence 7816 BP; 2324 A; 1649 C; 1677 G; 2166 T; 0 other; ttggcgccca cctacgatga actcacttct acagctataa caatggcttc gcaaagcaac 60 caagttgtag catctttggc cacgaagcta gtgtttccaa tcacaggcgg ctcaagttct 120 gaaccagcca acaagaaaca gaagaaggaa gcacatagaa gggtacatca tgttggagtt 180 caaggacctt tcatcaagtc caagtagtcg catattccaa tcaccttttc tcaggaagac 240 cttcagctta aagattatcc tcacaacgat gcaatggtca tatattgcat catcaaggga 300 tttttggtcc ataatgtctt agtggacaca tgcagtgcaa cagataacat ctttgcgaag 360 gccttcaggc aaatgcaaga gctagatgat aagatacatg atgcaacaca ccctctttgt 420 ggtttcggag ggagatagat agtggcactt ggcaagataa caatgccagt caccttcggc 480 tacgttaaca acacaaggac atagcaagtt gtctttgata ttgttgatat agagtaccca 540 tacaatgcaa tcattggtcg agggacgctc aatgccttcg aagcaatact ccacccagca 600 tacccttgca tgaagatacc ttcggaacaa gggcccattg ctgtacatgg gagtcaagaa 660 gctgtcagga gagccgaagg aagttggatg gattctaagg ctattcataa tatagatgaa 720 gtcgaagctt atcagtagta taagcacaaa agagaaaagg ttgcttcggt agaccaacca 780 aagcctatgc tcttgtgtgg agacatagcc gagcaaaaag tattgctggg atctcaacta 840 tctgatgaac aagaaaagac cttgctaaga tttttgttta acaacaaaga tgtttttgct 900 tggacagcca atgacctctg cggtgtcaat agagacatca ttgagcactc actcaatgtg 960 gactcatcct ttagaccaag aaagcaaagg cttcagagaa tgtctgatga caaagccgaa 1020 ggaccacgaa atgaagtaaa aagacttcta agtgccgacg ttattagaga agtaacatac 1080 ctagagtggt tggccaacac tgtcatggtg aagaaagcta acggaaaatg gagaatgtgt 1140 attaatttta cagatcttaa caaggcatgt ccgaaggatg aattcccatt gccaagaata 1200 gattccttag tggatgcagc agccacttcg aaactcatga gcttattgga ttgatactca 1260 ggctatcatc aaatctggat gaaaaaggac gatgagccga agacaagctt cataactcct 1320 agtggcactt attgttatct ttagatgcct gaggggctca agaatgctgg aggaagcttc 1380 agcagaatga ctgccaaagt tcttcactct caaattggca aaaatatgct aacatatgtc 1440 gatgacatca tagtaaaaag cacaaaacaa gagaaccatg ttgctgattt gcaagagaca 1500 tttgccaatt tcagacaagc tggtcttaag ttaaatccag agaaatgtgt cttcggagta 1560 aagaatgaca agtttcttgg ctgcttggtg tcaacaaagg gtattgaagc taacctaagc 1620 aaaatcgaag ctatccttcg gatagagccg ccaaattcga aaaggggggc tcaaaggtta 1680 gcaggaaggc tggtatcatt gaacagattc atttcaagat caacagagag gaatctacct 1740 ttctttgaaa tattgaaatc agccgaagtc ttccaatggg gtccaaccca acaaaaagcc 1800 tttgaagaga tgaagcagta tttgatagat ataacaactt taactccacc ttcatcagga 1860 accccattgc ttctatacgt ggttgtttct catactgcgg tcagtgcagc acttgtacaa 1920 gagaaacaag atggccacat aaaaaagcaa gcaccgatat acttcgtctc cgaagtactc 1980 agcccatcta agaagaatta cacataattg gagaaggtat tgtatgttgt attgatggcc 2040 tccagaaagc ttcgacacta cttccaaaca tatcatataa tagtgccttc atcacaaccc 2100 ctgaaggaca taatgaggaa cagagaagcc acaggaaggg tcgaaaaatg ggccgcagaa 2160 ctcaatgaat tcaccattga ttatgtacat aggtcttcga ttcaatctca ggcgttgtca 2220 gacttcattg tcgattaaac gctaggggct caggatgaag atagaataaa tgatatcgaa 2280 gcttggatgg tattttgtga tgggtcctgg ggaaccttcg gtgcaggggc aactgttgtc 2340 ctagtagcac catccaaagt tagaactcgt tatgcagtac aattggattt tagctgcaca 2400 aataatattg tagagtacga agccctcctc ttggggcttc gaaaacttaa ggcaatgagt 2460 ataagaaggg cagttttcaa gactgattca caagttatat caggtcatgt ggacaaaagt 2520 agcaaggcaa gagatccgaa gcttgaaaaa tatctagatg cagtccgaag gttggaagct 2580 tcttttgaag gtttctttgt aaagaacatc ccaaggggag aaaatgagca tgcagactta 2640 ttggctaaat cagtggcaca ggggcttccg ctaccttcgg aggtgttttt tgaaataata 2700 aaagcaccat cagttgagct catggaaaga gcggtgctca cgatttcact ggtacatagt 2760 gaagattgga ggactgagat tgtatctttc ctccagggca actgtctttc agatgacgaa 2820 ggttataata acagaatgga tgcatggaca agaccatatg taataataga aggggagtta 2880 tataagcacg gagtttgctc cccattgctc aagtgtttat ccagaactga agggcaagaa 2940 ctactgaagg agatacatgc aggactatgt ggggcccaca ttggatctag gcccctattg 3000 gggaaggttt tcagacaagg tttctactgg gcgaaggcag cttcggatgt agcagaatta 3060 gtacaaaaat gtgaaaattg ccaaagatgc gccagagacc agaagcaacc ttcgtctttg 3120 actcaactaa tacaaccgac ttggccactg caaagatggg gtttggatct gttaggacca 3180 ctcccaccgg cacagggcaa cttgaaatat gttgtggtgg cggtggaata tttttctaag 3240 tggattgaag caaagtcttt ggctacaata acttcggcca cagtacaaaa attcttctgg 3300 caaaacatcg tttgtcgctt cagcgtgccg aaggctatca ctgttgataa tggaactcag 3360 ttcgatgtcg aaactttcaa agccttttgt agccaaattg gtacaaaaat acacttcgca 3420 tcagcgagtc atctggagtc aaatggattg gtagaaaggg caaatggaat tgtaataaca 3480 ggaataatga agtcaatctt caatcagcct aagggaaagt ggccagatga attaataaaa 3540 gtggtctcga accacaacac tgctgtatca aggtcaatgg gatttactcc attcaaactt 3600 ctgttcggtg acgaaacaat tacaccggaa gaagaaagaa cgagttcaat aagaacttta 3660 gcttcgacag aggacgaagg tgactgccaa gtaacaaagg ataccataga agagaccagg 3720 cttcaagtca tagagcacat taataaatac caggctgaaa cagtcaaatg gcgtgacaga 3780 aaagtaagat tgaaaaacac caagccaggt cacttggtgc ttcgaagggt ggccaaccct 3840 gatatagtgg ggaagcttca tcttaaatgg gaaggagcct ttctggttgt atcttcgtca 3900 agacctggct cttacaggtt gaaagacatg gatggaaatg acattccaag atcttggaat 3960 gcagatgagc ttcgaagata ttatgtgtaa acaatgtaat tttcttatta tttccttatg 4020 gcaccctttt cctttcaagt tgggagaaag gtttttaacg gggccatagg ttgtaatttt 4080 tattctttgt tttggcctat gcaatataaa ggcaaaattc ccccatatgt aaattgtaac 4140 atccagattc gcaccttcga gtgcaaaaag ggacatggag aagctcaaaa gtcgtcccta 4200 aggggatgca gagccaaaat atcacctgaa aggtgaagaa gctacaaagt cgttcctaag 4260 ggagcgcaaa gtaagttccg aagctcaaaa gttgttccta agggaatgta gagctaagat 4320 gacacctaag taaaaggtga agaagctcaa aagtcgtttc taaggggatg tagagcttga 4380 atgccaccta agtaaaaggt ggagaagctc caaagtcgtt cctaagggga ttctgagctt 4440 ggctccaaag tcgttcctaa ggggatgaag agctgaaata ccacctaagt aaaaggtgaa 4500 gagactccaa agtcgttcct aaagggatgc agagtttggg tgtgtttttg gcatacattt 4560 gcatagctca ttacatcatt cattgcattc atacaagcat tcattagcca ttcttaggat 4620 catcatcatc atcatgacat aaagtactaa caggaaaaga cagaagatgt ctgtcttcgc 4680 tggaaaaaat gcttcgttga aaatggagat gctttgtctc agacaaaact tcatggcata 4740 tgaaggtgat tcgtctttga taaaaaaatg cttcaatgtg aacgaaaaga atggaaggtg 4800 tttttcgcct atggctcaaa aattgcaagt gttggtttcg tccatatcaa agcaattcat 4860 acaggagcaa ataggtaaaa ttatattaca agatattcac aaatttgtac aatattttgt 4920 tcaactaaca attacaattc cttgcaaagt aatgcaaaga gaccctaagt tttctacaga 4980 tagatacaaa agaatgtcct aagagtcttc aggccttcag aacaagcttc ggctcagcaa 5040 ccttcctgca aacagatgaa ggtataaggt aatcagaaat ttaataaagg aaaaccaagg 5100 taaaaagaca ggtaaaatag tcatactgaa ttgagcaatt tcctagcttc atccccagcc 5160 aactcacgtc cgcccttagc ccaaatttgt gtaatgaatc tgttccctat acttcgggct 5220 tcggcgggga tatcaactat atctgacgtc gaaagattga aagttggctt gttgactgtc 5280 ttggcatgag tacatccagc cttcataaaa gcagcagctg tgcctcgaga agctaccagg 5340 gcacaaaaat ctctatgccc gcttataact tcgtcaaggg cttcaacttt gttttcaata 5400 tgattaaagg ctctaggata tcttcggtcg aaggggtaaa cttttcagaa gcagctccaa 5460 atgagttgaa tatcccctta agccggtcag cacaccgagt cgcaaaatct acacacttgt 5520 tccgaaggtc cttaatagac tcgtacaact tcgtattctt ctcagttttg gcctcgactc 5580 tttttttaag tttcttcgtc tcctggtcga agcaccgtga actctcatcc aagatcgatc 5640 gagcttcatt tagttcctcg cttaacttgg tattttggga tcgtgattct gcgagggaac 5700 tttcagctat ttgcagtagg atagtttttt cttctagata agtttcaagt tcctttattt 5760 tttcctctaa tcctttaact ataactttgt gtttcatgtc ctcactatcc tgctgcattc 5820 tcagcgcttt gcttagcagc atgctctgca aacaaattaa agttagaaca ctcaatctat 5880 ctcgaaggta ataaaaatct tgatgaagat cttaccttaa aattagaata aaataggcta 5940 ccaacaatgt gttgtcatcg gtaaccactg atgtttgcct cgagcttcgg gaatccgaca 6000 ctcttagaaa gagtgccgat tatctttgcc ccggcgcggt cgcttataca tcctaaaatt 6060 tcttcatcaa ccctaccgaa gagcaaagat cccggctggt aaccacaaga tattacatat 6120 tctttcagct cttccttgtc ttcctcggaa agctcctggc cgcccacgtg acgaaggtca 6180 aaatcccctt catccgaagg agttttaaca atttcttttt ctttatcagg cactgtggcc 6240 atggtttctt ctggagctac atttgtctcc acagtcacat ctgcaaatac gtctgacaca 6300 agcctatcaa tatctgacat tgttgtttcg gcttcatcag catctttggc ttcggcagca 6360 ccttcagctt cagctttggt atccgcatga atcgctactt tggccgccga agctgaggac 6420 agtgtttgtt caattgcttc cattacattt acaattcgtt gcttcttttg ttctttaact 6480 ttctcctctg tagccgaagg ctgttctttt ctctgtaaaa tttttgtcag ttctcatccc 6540 agaggactta gcagcttgaa gggtggggat tcagtcatta ccttcaggat ttcggctgct 6600 tcagcagcag agggcgtcag aggagcttct tctcctgtct catctacttc ggtccgaaga 6660 gggtattgtg tcaagcttcc actttttaga aattgttgtc ttaagttcag gagttgtttt 6720 ttatttcttc gaaacttttt catcctcctt cactacccga gcagcttgcc tactcaggat 6780 gctaacaatc cttttccttt ttaccccttc ggcccctttg tcaagcctct tgtaatccgg 6840 gtattcgaag tttaacgtgt ccatcacccg attcagcctt cgtttcggcc gggtgccgaa 6900 ggcggtagtc attaattggt cttccttttt ggtgtagttg ccaaggattt cgttgcacat 6960 tgtttcgatc atttctagca actctttgca tggcttcttg aattgcttct caaatttaaa 7020 tcagtaaggg agccgaacaa gttcgtactt tttacccccc ccttcttttt cttaggcatt 7080 ccccagccac tagaggtcgg aaatattcta tttgccaggt actcttgtac tagatctcta 7140 atgctgattt cggctgccac cactttgaat tctacttcgg ctaactggca tggggaacca 7200 agctgcatgt ggcacaaggg ccttgtcatt ccgaagctta acttcaatgg actcatgacc 7260 atagtcatta gcttctccct tttcttctcg tctgctttta tgtagaacca ttcgcttgtc 7320 caaccggtcg gccacttggt acgatagcca attaccgggg ccttcgtatc tttctgatat 7380 gcgaagttgt agcagccgaa gttattatga agaccatccg ctctgccctt cgtttgatag 7440 tgcagctcat gcacttggca gaaagcttcg acattaggac tcataccctg gcttcggaga 7500 gcccatatgt agacttgtgt aacgattgca ttaggtgtca actgatgaaa gtatatctca 7560 aaattcttta aaacctctcc aatcatctca cgaaaaggga atcaaagccc tgccctaaag 7620 aagctcttaa aaacaacgat ttaagcctcc cttggctgcg gaactacctc ctccccggca 7680 aaccggacaa gcttgctctc gacttcgcca aagtagccca atttttttat cataaccatg 7740 tcgtctgccg tcacagtaga tttaccaaat tcaatatggc taggtttcat taggctcaga 7800 atggtgttgt cctctt 7816 // ID TEKAYI repbase; DNA; GRAS; 5921 BP. XX AC AF050455; XX DT 15-JAN-1999 (Rel. 4, Created) DT 15-JAN-1999 (Rel. 4, Last updated, Version 1) XX DE Internal part of gypsy/Ty3-type retrotransposon Tekay. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW GYPSY superfamily; LTR retrotransposon TEKAY; TEKAYI; TEKAYLTR; KW internal part. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-5921 RA SanMiguel J.P. and Bennetzen L.J.; RT "Evidence that a recent increase in maize genome size was caused RT by the massive amplification of intergene retrotransposons."; RL Unpublished. XX RN [2] RP 1-5921 RA SanMiguel J.P.; RT "TEKAYI."; RL Direct Submission to Genbank (13-AUG-1998)Biological Sciences, RL Purdue University, Hansen LSRB Rm 339, West Lafayette, IN 47907, RL USA. XX DR GenBank; AF050455; Positions 3442 9362. XX CC TEKAYI is an internal part of Tekay retrotransposon; its LTR is CC deposited in RepBase as TEKAYLTR. CC TEKAY was an active element several millions years ago since CC there CC is a 5% divergence between its LTRs. XX SQ Sequence 5921 BP; 1846 A; 1246 C; 1373 G; 1456 T; 0 other; gaagtggtat caaagctatg ctgaccctag gtcattagac tagttagaaa tggaaagcct 60 agtttgttca aaacttgtta atttcattct tataaaatta ttttatcagc cttacctctt 120 taaaatttca actgagttga catttctctt gtagatggtt cgtactctcc aaactacctg 180 ggtcaacact agctacgccc ctccgccccg gcaaatccct gtctacccag tggtagtcga 240 ggaagtttcg gtggatctcc cttacattcg agtggagaat ggagtcatcc tagaggacag 300 ctcggaggaa cagctgccga cgcccacccc gttagcagag tcactggcct tcgcagctag 360 gtcatggaca tcggcaccgc ttgcaccaga catccaagct cctgcacccg gaggcgacga 420 ctcagacgac tctggggacg acgatgacga cggcaacgag gacgaagaag aacaagtcaa 480 cgaagaagct aactacgccc agcaggacta cttcatgggg tttggtcctg tcatcgaaca 540 ttacacatca atgttcgaga cagggcactt ccccaacctg ctgcaagaag tgttgcacgc 600 attgggaacc tacgtccgcc ccctgtatga aacaaggcaa gtgagcgagc ctccccgggc 660 ttgctactac atcactcgca tccatgccag ggtgatggat gcaggggata ggggattcaa 720 gactctgtct gctcatgagt ccctgacacc gctatccacc tacactgcct cgttcagtga 780 tgctaccaga cggaccctgt ggtctctcag ccacacctac cggcagcagc tgcatgacac 840 gaggttcagg catcttcctc tatgtctgag tggagggagc cagaccagca tcgttccagg 900 tggagctagt gaggagtgcc tcaacaccct agctggtgtg gtggccggac tcaacaccga 960 cctggacagt gccaccctgg atctctctag ggtgcactta gagctggagg atgcccatgc 1020 taggattgca gccctggaag cccaacttca aggataggat ccgcctgaag ctcaggtccc 1080 cgccatggcg ttgtctcctc cccgcaagag gcttcgctat ggggagcccg gatccgtcac 1140 taggctgctc tagggatttt aagtttatgt tgtaataagt tagttctcgc atcagacaat 1200 gagtactctt tttaagttat ctctataata acaacaacca tgtgatggtg ttggttgata 1260 tgtttgagtt ggatttttgt ttgagtgcaa tggtcttatg gaatgatggc cataagagca 1320 tataaaaata tataaactta ggatattccc ctctagaatc tgtattgctc ctcactcttc 1380 taagaagttc actttctaac caatcagatg gtgaacgctc gccaaggacc caacaacaac 1440 cggaaccaac gtggtcaaca gataccacca ccaccgaacc ccaacatgga acagttcatt 1500 gtcgcccaca tgcagcttct gcaaggactc actacaactg ttcaacagat tcagcagaac 1560 tagctgaatc aacagcatca gcagcaacag cagaatgcac ccccggctag agacaaacac 1620 cgggatttta tgagccatca cccaccaact ttctctcatg cggttgatcc tttggatgcc 1680 gatgactggc tcaaggtcat tggaaagaag ttggatatca tccaatgcaa cgaccgggaa 1740 aggtcttgta cgcctcggga agactcgagg gttccacgtc cgattggtgg gatgccttca 1800 cagtggcaca ccccaatgcg gataccataa cctagcagga gttccaagtg aacttccacg 1860 ctcatcatat tccctcgaga attatgaagc tgaagaagaa ggagttcctt tcccttactc 1920 aagggaatat gactgtcagt gagtaccgtg atcgcttcac tcagctctca cgtacgcacc 1980 agaagaggtg gatacagatg agaaacatca agagcatttc ttggaaggac tgattggacc 2040 tctgaattat cagctgcaga gtcatacctt ccccaacttc cagactctgt tgaacaaggc 2100 aattggcctt gaaagtaaaa taagggaact gtctgaccac aaaaggatgt tccaaggtca 2160 gtccagcagg aacacccgcc cgaacaacgc tcaaggttct cagttccgct ctagaaatca 2220 gggtggaaat aattatcaag tgcaacgctc tggacaacaa ggccagagaa ataatcaaag 2280 tcagaaccag cagagaaaca actcccagac caaccagagg tctggtggga gttcacagaa 2340 tcgtcaaggt ggcgccgtga acacgcaggc cagaagcaac aacgcaccag tccaacccaa 2400 tggatgtttc aagtgcggtg agcttggcca ttatgctaac aactgcccaa ggcgcaacca 2460 gcagacacct cagaagagca acaatcagag gaatgaccag aacacccctg ctcgtggatc 2520 tgcacagaac aagactccgc agaactagag tagaggaagg gtcaatcacg tcaccgcaga 2580 atcagtgcct gaggatgccg acatggtgta tggtatgttc cttgttaact ctatacctgc 2640 atcagtttta tttgactctg gagcatcaca ttcatttata accgagtcat ttgtggagaa 2700 acataacata ccaaagtacc cccttaagaa gatgttacac attagttcat caggaggtga 2760 catgaaggcc acacactcat gcctccgtgt taatctcaag attcaaggaa tagattttcc 2820 agtcaaccta gtggtcttag gatccaacgg tattgatgtg attcttggat gcgactgatt 2880 gaaaagttgt gatggagtga tacaatgtgc caacggaaca attatgttga caagtcctca 2940 aggtgaaaga gtccaagtta gcacagacat gtcaacaaat gcaaaaggga agacagtgat 3000 aaatcacttg gaagaaaagc tcctggaaaa tatcaagata gtgtgtgagt acccagacgt 3060 atttccggag gaattaccag gtatgccacc tgaccgtgat atatagtttt ctattgaatt 3120 attacccgta actgcaccta cctcgaaaag atcttataga atggatgtca atgatttagt 3180 agaactgaag aaacaaatag aagaattact agaaaaaggt ttcattcgcc caagttaatc 3240 cccttaggga gccccagttc tatttgtgag caagaaagat ggttcgagga gaatgtgtgt 3300 tgattataga agtttgaatg aagtaaccat taagaataaa tacccgttac ctcggattga 3360 agatttattc gatcggatga agggagctaa gatagtctcg aagatagatc taaggttggg 3420 atatcatcag ttaaagattc gagcagaaga tgtacccaag atagccttca cgacgagata 3480 tggattatat gagtttttgg tcatgtcgtt cggacttact aatgcaccgg catactttat 3540 gaacttgatg aataaagcat tcatggaata tctggatcag tttgtggttg tattcattga 3600 cgacatactg atatatctct taatgaagaa gcacatgaag atcatctaag gctagtccta 3660 caaaagcttc gtgacaacca attgtatgca aagttctcga agtgtgactt ttggttgaag 3720 gaagttgctt ttcttaggac acattgttac tgatggtgga attaaagtgg atccaggaaa 3780 gataagtgaa atactaacct ggaagcaacc aaaggatgtg tccaagatca gaagttttct 3840 tggaccggca ggatactaca aaagatttat tgaaggtttt tccaagttag tgaaacctct 3900 tacctctcta ctagagaaag gtaaagagtt caagtgggat gaagcatgtc agaattgttt 3960 tgaagaactc aagaaaagat taaccactac accaatactg gtaatgccag acattcacaa 4020 gggatttgat gtgtattgcg acgcatcaca ccttggactt ggatgtgtgc taatgcaaga 4080 aggaaaggta atagcttatg cctcaagaca gttgagaaag catgagaaga attatcctac 4140 gcatgatttg gaactagctg ccgtagtgca tgccttgaag atttggaggc actatatgat 4200 tggaaacaag tgcaaaatct tcacggatca caaaatcttg aaatatatat tcactcagaa 4260 agaactcaac ctcaaacaga gaagatggct tgagttgatc aaagactatg atttggaaat 4320 acaatatcac ccaggaaaag caaatgtagt ggctgatgct ttgagccgta agggtcaagt 4380 gaacaacatc actactcatt tgatgtcaca taaattgtgc tgggaaatgg aacaactcaa 4440 ccttggtatg ctcaataatg tagaagcaac ggttatggaa gttgaatcta cgttggaaca 4500 agagattcgt aaaggacagg aatctgatga gaaaatcaag gaaattaaaa ctttgattgg 4560 tttgggtaaa gccccagatt tcacggaaga tgatcaaggc acaatatggt ttaaaaagag 4620 aatctgtgta ccggaaatcg aacaccttcg ccaacttatt ttgagagaag ctcatgattc 4680 ggcttactct attcaccctg gaagtacaaa gatgtaccag gatttgaagg aaaagtattg 4740 gtggtacggt ttgaaaagag atgttgctac tcatgttgca ttgtgtgacg tgtgtcagcg 4800 agttaaggcc gaacaccaaa gaccagcagg attactacaa cctctcaagg taccggaatg 4860 gaaatgggaa gaaatcggta tggattttat agttggctta ccccgtactc gagatgacta 4920 tgattcaaca tgggtcatag tagactggtt gactaaagtg gcacacttta tacctgtgaa 4980 gacaacttac tcaggagccc agttagcaga gttatagatc tcgaggattg tttgtctaca 5040 tggagtactg aagaagatcg tatcagatcg agggacctaa tttacctcgc gcttttggaa 5100 aagactacat gagtccatgg ataccaagct aaactttaat tcagcttatc atccgcaaac 5160 agatgggcaa acggaaagaa caaaccaagt gttggaagat atgctaagag cttgcgctct 5220 gaagcatggt agaagctggg ataaaagttt gccttatgca aaattcttgt ataacaaagg 5280 ttattaggca agtcttaaaa tggcaccatt tgaggcactt tacggacgaa agtgtagaac 5340 accactttat tggaatcagt ccggagaaag tcaagtattt ggtccagaaa ttctccaaga 5400 agctgaaaag caagtgcaga ttattagaga aaatttaaag acagcacaat caagacagaa 5460 aagctatgct gataatagaa gaagagagtt gatattcgaa gtaggagact tcgtatacct 5520 taaagtttca ccaatgagag gaatgaaaag gtttaaggtt aaaggaaaat tatctactcg 5580 atatattggc ccgttcaaga ttttggaaag aaaaggtgaa atagcatatc agttagagct 5640 acccgatagt ttatcggatg tgcatgacgt atttcacgtg tcacaactta tgaagtgctt 5700 aagagtacca gaggaacagt tacccataga agaactgaat gtcaatgaag atttaactta 5760 ttcggagtac cctgtaagaa ttctggaaac atctcggaga attacacgga gtaaagttat 5820 taacatgtgc aaagttcagt ggagtcatca ttcggaagat gaggccactt gggaaagaga 5880 agatgaactc agagcagaat tcccctagtt attctcggaa g 5921 // ID NUSIF1_TM repbase; DNA; GRAS; 7803 BP. XX AC AF459639; XX DT 16-OCT-2002 (Rel. 7.09, Created) DT 16-OCT-2002 (Rel. 7.09, Last updated, Version 1) XX DE Triticum monococcum gypsy-type retrotransposon, NUSIF1_TM. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW GYPSY superfamily; LTR; NUSIF1_TM; NUSIF_116F2-1PART; KW retrotransposon; TREP257; fragment. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RA SanMiguel P., Ramakrishna W., Bennetzen L.J., Busso C. RA and Dubcovsky J.; RT "Transposable elements, genes and recombination in a 215-kb RT contig from wheat chromosome 5A."; RL Unpublished. XX RN [2] RA Dubcovsky J.; RT "Direct submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AF459639; Positions 16097 23899. XX SQ Sequence 7803 BP; 1319 A; 2368 C; 2502 G; 1614 T; 0 other; tgtcggattt cgggttccgg cagaccctta aggttcgaac actggggtgc gtgcggagat 60 cacgtcctca acctccccgc ctcacaaaga tctaaactac taaaaggatc acacaagaga 120 cacaagattt atactggttc gggccaccat tgtggtgtaa taccctactc cagtgtgtgg 180 tggatggatt gcctcttggg gctggtgatg atgaacaata caaggaagaa cagcctcgcg 240 agggtctgtt cttggctggg gcgatgaact gctaggagga gttcagtcgc ccttctctct 300 ctctctctct ctctctctct ctctctctct ctctctctct ttctctctga tttccggtct 360 tcgatccgct aactgctcga accgaacccc ttgctatgtg ggcggctagt cctatttata 420 ggggccctgg tcctcttccc aaatatcgag cgggaaggga gccaacaatg gcgggctaat 480 ttgaaggggg acagcaagta catctatcct gacaaaaggt ggtcttcgcc tgcgaaaggc 540 tctgcggtga cgccgcgctg ggctccatgg tgacctcctt ctcgtagtcc gcttggtcct 600 ggtcttgttg caccgaaacg gcaacctttg cctgatgcct tggtactcca cggctgtgct 660 tgcccccttt gcaccaaaga ggaaagaagg acgctgcccg cgctggcacc cgcctggtgc 720 cctcgatcgt catggcttgc gtcacgggca cctcgcgagg caccccacct tgacatctcc 780 gtctcctcgc gagccagcct gaggaggctg cgcccgagga tgcgccgtgt cgtccgcctc 840 gcgaggcttg gcccctcacg agggtcttga gtcttgtgcc tgatgaagat gggccatgtt 900 gggcccccat ttgagccacg ccgcaggccg caggcaggca agtctgggga cccccgttcc 960 cagaacgccg acagtagccc ccaggcccgt ggcgcgcatg ggcttggccg tgctgagagg 1020 cgaaagggca agagcgaggc gacgcgggcc ctaacagcct gtggccttgg gcgccgcgtg 1080 gcggttgacg ggacgtgggt gcttcagcaa ccacgcaggt tggtaaagga gcggcatctg 1140 cccggacttc gccttttgct ctctccggtc gttgctcaga tcccctttct tgcgcctcct 1200 ctttcttcct ctaaacttcc agatctaatc cagctgcgtg acctagggag ccatggcgcc 1260 tcgccaacct ctggccaaag cttggtactc ccctgctctg gatccgtcga acgtgtccaa 1320 ggcgagcttc gcccggctgt gccagatggc gacggcgcag ggcgtcaacg ggacggagat 1380 gttcaaggcc ggctccacca cccccgagga ccgagggagc actttttatc ctctctttgc 1440 gagctccatt gttgcgggct tgttgcctcc cttctccgag ttcttcttct ccgtcctccg 1500 ccattacaac ttgcaggctc tgcatctcca tcccaactct gtcctccttc tggcgatctt 1560 cgcttactac tgcgaggccc atgtgggggt gcagccttcg gtggccctgc tgcgccacta 1620 cttctacctc tggatcaccg gcagttctat ttctgcgtgt gcgggcttcg tcgcgtatag 1680 cggcaccatt accatctcga accccgggaa gaggatcgag ggcttcagga gcaagtggat 1740 cttggcagat gtcgggcgca tccaccctcg gctgatcttg cccacggagc aacccgtgag 1800 ctccagcgac tggtgccgag cggagctcac ggacccccgc gcgaagccgg tgttggagaa 1860 gatggacgcg gacctgaggc cggccaacat gacgacggcg aagttgaccg gtgcatcgct 1920 gctgaaggag ttcctggagc accagctggc cccgctccgg gagtactctc ctccgatgtg 1980 gaggcctcat ccgtgccccg aggctgtgga tgaagaggat gtgaccgcgg ttctccaatc 2040 tctggtcggg ggcgaggtgg caaggccgaa gggcgctccc gagcccttgt tcctttgcga 2100 caactggaag caggtggtga agtccatgcc tgtttttaac ggggacgggc tcgtgcccgc 2160 ggtggcttct gaaggaccgg tggacgtgcc ctccggcgac tccagcgatg aggaggaggg 2220 cgaagaggag aggggagagg ggcccgactc tggggcgacc gacggagagt ccagggctcc 2280 cctccctcgg cgctcgcccc gtactctccg cctttcaccg agtgacgatg atgatgatgt 2340 gctgggcagc gggagctcgc ctccgattct gaagaaggac aggaccgcgc tgatctcccg 2400 cgggtccgtc ctgactccgg gccgaaccgt ggacgcgcct cttgcttctg gggtggaccc 2460 ttccagctgg ctgttaggct tcaagttagg ccggaggctg cccgagttca ccggtgaaga 2520 cccataagtg cttgatcctt gatcttttgt ttctcgtctt gccgacgagg cttgatgatt 2580 gcttctcttg aacaggcagg cgcccgcggc gaagaagccg aagggagctc ctgaggtccc 2640 acctgcggcg acgccttcgc ctgcagggga gggagatcat gacgcgcggg cctctcctgc 2700 ccgcgcatcc ttgcgaggtt tggctgagct ggccggggcg agctcagccc ccacggccca 2760 agtgactccg gaggtgccct cgtctggcac cgctgctacg gctgtgaagg cgcagcggac 2820 tctgcttcag gacactgcgg cctcgccgcc gctacttcct cctcccattc cggtgaccgt 2880 tgcttcctcg gctcctcctg ttgttctgga gtgtgccgat gctactccgt cttcttcttc 2940 catcttggag catgccgccg ctgaactggg ccggctgcgg taggaccttc tcggcgccga 3000 ccctcgcctg gtggtcgggc gcctggaact ggattcgggg tggattcgct ctgatgcttc 3060 gattcgggcg gcgctggttc aggcctcaat ggcctgtgac ggagagaggg aagccaccct 3120 cgaagcgaag gccgctcgtg acgcagccct ggggaagtgg tcgaagtccg cagccgttgc 3180 aaggcgctgg aggacgagct gcaaggcttg cgaggccagc ttgcggagga gctccgcctg 3240 cgccaagagc tggagaaggg ggcgaaggcg cgcgaggcgg cactcgtgga ccaggaggcc 3300 aagctcaaga agcgccgcga ccacttaggc gcgttgaaga aggagctgga ggtgacgaag 3360 gccgagctgg acgccaaggc tcaggtcctc gccgaggatc gcgaggcctt cgcagacatg 3420 gagaaggacg cccgcgcttc tctgaaaatg ctttacgaga gcggcctgga cagcccgcta 3480 gctggtgacg aggacggccc caccaagctg cttcccttcc tggttaaggc tcttggggat 3540 gtcacccttg gcatcggccc tgcggccgag gccgaggcgc atgtcttgtc ttctactgcg 3600 ctgacgcggg tcttcgccca cgtctacctt cgtgatccca acgccgacct cgacggcctg 3660 ctggaaccgg tgagcggcga gggtgctgtc gccgctgtcg aagccgtgaa ggggcgcgcg 3720 gaggcgctgc tggagaagtt ccgggccttc agcaccaggc caaggcaagg tgccgccggc 3780 cccgccgctc catgaggcga agctgctccg ctcagcttca ccgccgacaa gtaactccgt 3840 tccattcctg ttctcctttc gattcctgca catgtaccac gcttcgggga ggcatttaaa 3900 cttgcgtttg gcattgagac gacagtatgg actataatat ttgcttttaa gttccttgga 3960 ttttatgctt ttcttcccta cttgcttgtg ttctgcgccg gcagagcctt gccccgcgca 4020 tacctcaccc agcattagcc ccgaccggaa accaggacgg gaccaaagga gtgaggggct 4080 acgtgacaag ttaggctcct gagtcgtgat gcttaggagt cccccttggt gtacgaacaa 4140 caagtaggga agcgtgatgt aggcgtgtct tccgttctac gtctgcagag cccgacttcg 4200 cgcgtacctc acccagcata gcctttcgga actaaggagt gaggggctat ggagccagtt 4260 aggcccctga gtcgcgatgc tcaggagtcc cccttgatgc gcgaacagcg ggtgatgagg 4320 cgagatgtaa gcgtggctac cgttctacgt ctgcagagcc cgactccgcg cgtacctcac 4380 ccagcatagc ctttcggaac taaggagtga ggggctacgg agccagttag gcccctgagt 4440 cgcgatgctc gggagtcccc cttgacacgc aaacggcctt cataccttgg ctccgctcgg 4500 ggagagacgc gcgacgaacc aggcccgagg ggcctggctg ggcggcgtac gtctgggcgt 4560 gacccagcca tagcccccgt gcccagcccc ctcgcatggc actcccgagg ggaggcgttg 4620 caatgaggcc agccactgag ctctgggctc cctgaggtta atgcggcccg gaggccaccc 4680 ccagttgttt atcaccagcg cggagcatag cgcttccgta tgtgtacggg catagccgcg 4740 cctcggcagt gtcgtcagcc agcgcggagc atggtgcttc cactggtacg tgggaggggg 4800 ctcccctccg ggaggagccc ccggggcgta tacaaccccg ccctgacatg tgaccggcac 4860 ggtagagcta ggtgaggtgt atctgggcac ccgtgagcca gcgcgggact cacgaggccc 4920 tacctctggg cgggttgcgc ccgacactgg gccgtatctt gagatgtgtc cctacaaaat 4980 ttggttagat gccggtactc tacatcctcg ggtcccggcc ctcgagcttg tctcagccgt 5040 cgctggtgtg ccaggtcgcg atgccatgga caaggccaga gggtgagggc tggagagcca 5100 gtaagggccc tgagtcgcga tgctcaggca ccccccttta acgtgcaagt agtcgacatg 5160 gagaagaagg gatgccgcga acgggcatca tgcaatcaag tgtgataggc aattgcatag 5220 ttggaaataa acgctaggga gatacacgcc gctgggtctg gcccgagcgg cttggggatg 5280 atgcagcccg aggggcgctc ccaacaaggc aaactaacga cggaaaggtg aatgcagata 5340 catgccgcag ggacggaccc acacggcctg ggagtgatgc aaccctggga gtgcgctccc 5400 agctgagaac ggaacttgaa agatgtcacc tgaggatgtc gtcggcgtag tggcgttggt 5460 gcggcagact tgacgggcta cagaagccga tcctcacgag cccccaggcc ccggggcctc 5520 gggaggctcc ggaggcgctg gtgactcctc gcgagctgcc tccatctccg ccaaggccgc 5580 ggaacgcctg tcttcctgag cctccatgat gcccctcatg aggtgctggt atgccgcagg 5640 catgctcggc aggccgtaag gcatgcgaac atagctatgg ggtggacccc cgcagcgccc 5700 cacttgtgag ggccagagac gctccatcgt ggcgatctga ttgagccctg gtacgtcgac 5760 acagacgcgc agcccaccat cctcgcctgg atgcggggcc acggctggca ggcggcagca 5820 atctctcatg atccttgtct cctgtagttc ttgaatggcc ttgtcaatga actcctgctg 5880 gtccggcctt ccttgctcgg ctccttctcg ggggaaacgt gccgcgaagc acgcctccac 5940 atggtgccca atcgcctccc tcgtgacctt ggctaggtcg gtggccctcc agatgagagc 6000 ccccgagccc tgcctgagga gggcattggg cgcgctttcc tatgcgatgg aaggagggtc 6060 cccctgggca gacgtgggcc ctgaggggcc gagcctgaca aggtcttctt cttcttgggg 6120 gtggtctcag gaagcctcct gcttccgcga tctgggtctt ctagcgacgc ggcctgatag 6180 gcccgctcca gggaacacac tgcatccttt tcttcacagg gcaccgtgat gacgccgcca 6240 cttcctggca tcttgaggac gttgtagcca tggtgggtcg cagtcatgaa cttggccagc 6300 gctgggtacc cgaggatggc gttgtacggc aggcggatgt gggcgacgtc gaagtcgatg 6360 agctcggtgc ggtagttgct gcgagccccg aaggtgacag ggaggcggac ctgcccgatc 6420 gggactgtgg aaccgtcggt gatcccggag aaaggcttgg ttggctgaag ctggtcatag 6480 ggcacttgga ggttgttgaa tgtttccacg gacaggacgt tgagccctgc cccgccatcg 6540 atgagggtct tggtgaccag cacgttgctg atgactgggg agcagagcat cgggaggact 6600 cctgccgtgg ccgcgcactt gagctggtct gccgagctga acgtgatggg gcacgcgacc 6660 accttagagg gcgcgttgct tcgagcttgg ggagaactgc attcctcacg ggtaaactgc 6720 ttgaagatac gttgagaggc tggggcttga gctccgccca ggatgcaggc gattgcgcgc 6780 ggctcttgga agcccccagc ccccttgtct tgatggcggt cttcgttcct tcttggtgga 6840 ggcggcagag gaggtaggcc tgcgttgccg tgagggcggt cctcacgagg ctgatccctc 6900 cagtcttcct cgcgaggcag gtcccgccag cggtcctcgc gaggctggtc gcgccacccc 6960 tggcgcgggc cgcggtcttc ccagcgtcct gggtttcttc ctcctcctcg atcgtagccc 7020 cggtcagcac ggtcagggcg acggccgatc cttccttctc acacggcgcg gagctcttga 7080 cattcgttgg tgttgtgggt gtggaggtcg tggtacatgc agtaccggct gcctctggag 7140 ggttcgggca gatccttgcc ccgctttgtg tatggttctg ccgcgagtac ggcagccccc 7200 ttgcgcttcg cgtccttggc tttgggcttc ttctcttctg ggttcgcggc aggcagcccg 7260 aggagggaga gacgtccctc ctcagccctg gcgcacttgt tcaccaagtt gaacagctct 7320 agggaggtgc agaggtcttc gtgcatcgcc agctcctcct tcatcttgac atcgcgcacg 7380 ccgtcaaaga aggcagagat gatggcctcc tcagacacct tggggatctt gaggcgcgcg 7440 ctgttgaagc gctggatgta cttttgcagg gtctctccgg gttgttgctt gatgcggcgc 7500 atgtcgctca cggcgggcgg gcggtcgcga gtaccttgga agttggcgat gaagcgggcg 7560 cgcatctggt cccaggagga gatcgtgcct ggagccagat tcaggagcca ggttcgagct 7620 ccttccttga gcgccatggg gaaccagttt gccatgacct tttcatcccc gccggcagcc 7680 tcgatgccca gctcgtagag ctggaggaac tctgcgggat cggttgtgcc gtcgtagcga 7740 ggaggcaggt cgggcttgaa cttgccggat aatttgaagc taaagctaag cacttctccc 7800 att 7803 // ID Gypsy4-SB_I repbase; DNA; GRAS; 5766 BP. XX AC . XX DT 22-OCT-2009 (Rel. 14.12, Created) DT 22-OCT-2009 (Rel. 14.12, Last updated, Version 2) XX DE Gypsy-type LTR retrotransposon from sorghum: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW internal portion; Gypsy4-SB_I; Gypsy4-SB_LTR. XX OS Sorghum bicolor OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Sorghum. XX RN [1] RP 1-5766 RA Jurka J.; RT "LTR retrotransposons from sorghum."; RL Repbase Reports 9(12), 3098-3098 (2009). XX DR [1] (Consensus) XX CC Consensus LTRs are >99% similar to each other (1 mismatch). CC Individual copies of the entire sequence are ~98% identical to CC consensus. XX FH Key Location/Qualifiers FT CDS 1103..5764 FT /product="Gypsy4-SB_I_1p" FT /translation="MPGADDGNETPHTPRTKGIIQHFERKVKLHTEGLDND FT LQVTNEKLGQLEATQIATNNKLTSLEESVASVDKSLAALLRRFDDFHTEDK FT EKHKEEKEGDREHGSHEDDYTGDTEHDDQDTRDRRRLRHNRRGMGGNRRRE FT VHNNDDAFSKIKFKIPPFDGKYDPDAYITWEIAVDQKFACHEFPETTRVRA FT ATSEFTDFASVWWIEYGKKNPNNLPRTWDALKRAMRARFVPSYYARDMINK FT LQQLRQGAKSVEEYYQELQTGMLRCNLEEDEEPAMARFLGGLNREIQDILA FT YKEYNNVTRLFHLACKAEREVQGRRASARSNISAGKANSWQQRVASTPSTR FT ISTPSSSDKTRAAPTNSVAKTMQKPAASTSSVASTGRTSNIQCHRCKGYGH FT MMRDCPNKRVMIVRDDGEYSSASDFDEDTLALLATDHAGNEDQIEEHINAG FT EADHYESLIVQRVLSAQMEMAEQNQRHILFQTKCVIKERSCRMIIDGGSCN FT NLASSDMVQKLALNTKPHPHPYYIQWLNNSGKAKVTRLVRINFSIGSYKDI FT VECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYHDRKIVLHPMSPE FT TIMQTDVARATKAKSESNKNDKSVIGNKDEIKLKGRCMIATKSDINEFNAS FT TSVAYALICKDALISIEDMQCSLPPAVANVLQEYSDVFPSEVPAGLPPLRG FT IEHQIDLIPGAVLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCAV FT PVILVPKKDGTWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGAVVFSKV FT DLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEV FT LRAFIGKFVVVYFDDILIYSKSLDEHLDHLRAVFNALREARLFGNLEKCTF FT CTDRVSFLGYVVTPQGIEVDQAKVEAIQGWPVPNTITQVRSFLGLAGFYRR FT FVKDFSTIAAPLNELTKKGVPFDWGKAQENSFNMLKDKLTHAPLLQLPDFN FT KTFELECDASGIGLGGVLLQEGKPIAYFSEKLSGPVLNYSTYDKELYALVR FT TLETWQHYLWPKEFIIHSDHESLKHIRSQGKLNRRHAKWVEFIESFPYIIK FT HKKGKENIIADALSRRYTLLNQLDYKIFGLETIKDQYVHDADFRDVLLHCK FT DGKGWNKFIVSDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTE FT DILAGHFFWPRMKRDVERFVARCTTCQKAKSRLNPHGLYLPLPVPNAPWED FT ISMDFVLGLPRTRRGRDSVFVVVDRFSKMAHFIPCHKTDDATNIADLFFRE FT IVRLHGVPNTIVSDRDAKFLSHFWKTLWFKLGTKLLFSTTCHPQTDGQTEV FT VNRTLSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFL FT PRAPIDLMPLPSSEKINFDAKQRAELMLKLHEATKQNIERMNAKYKCAGDK FT GRKQLILEPGDLVWLHLRKDRFPELRKSKLMPRADGPFKVLQRINENAYKL FT DLPADFGVSPTFNIADLKPYLGEEDELESRTTQMQERE" XX SQ Sequence 5766 BP; 1658 A; 1030 C; 1353 G; 1725 T; 0 other; gttggtaatc agagcaaggt tcttcggtga gagacttcta atcctttgct gtttttaatt 60 aatttcctat agtccagaaa agccaaaaaa aatatagtag attagttttt ccataatcct 120 attaaacctt tgtgccttgg ctagtaccgt tttagttagg gcttgttgaa tttgcgttgc 180 ttcggtttgt gtcgagttgc tggtcttagt gtctagtcct ttagagtttc gagttcttgt 240 caccatctat acacagccga gtattaccat atcttctctc tgtcgaatct gttgcgaagt 300 ccgaattgaa ctgtggtctt ggtccggatc gagtagagtt ccaatctgag ttccaccaac 360 gtgataaaaa aaagaaggaa accgagtaga actcggcaat aggtggaatc cgttttgtgg 420 ttggttctga gtggaaaccg aatagaactt ggagtccgct tgttaatata gcctgaactc 480 cgtctatgtg agtccttctg tgatccaaaa agaaagataa ctccatactt gttcggcctt 540 actctagaga gagagagaga gagacggaaa aaagtgtgtg tagcgaattg ctcttttgta 600 ttcttttgtt catataatca gtttttgagg ttgcccaaaa aaaagaaaaa aaaagaaaag 660 agaaaagatt caaaaaaaaa aaggggctgt ttttcatatt gattttaggt ttgttccacc 720 ttgttttcgg gggtgtgctg tggttttcct ttgtgtccag gctcgcgtct ctagcacggt 780 ctagcctagg accagcacag taccatcgtc gaacgcttat tcagctcgct tttataacta 840 acgtggtgct agttcgttcc ttgtttcagc ccacctatag ctccacatac tctacagctt 900 gacaggtctt gtgctgcagc accgatacac ttcgtccatt gctgtacact tgttggcaga 960 cgacccctcc tgtcaagcaa ggtaagaatt ggtaagaact tgtgttacag gttgagtgtg 1020 agcgacttgc tgtagctaca tcctagtagt tgtagggctt ttatttcttc acttgccttt 1080 ttgttgtctt tgtctttgaa ccatgccagg ggcagatgat ggtaacgaaa caccacatac 1140 acctcgcact aagggcatca tacaacattt tgaaaggaaa gtgaagctgc acacagaggg 1200 acttgataac gacttgcagg tgacaaatga aaagctgggg cagttggagg ctacgcagat 1260 tgccacaaac aacaagctca caagtttgga ggaatccgtt gctagtgtgg acaaaagcct 1320 tgctgctctc ctaaggcgat ttgatgattt ccacaccgaa gataaagaga agcataaaga 1380 agaaaaggag ggagatcgag agcacggtag tcatgaagat gactacactg gtgatactga 1440 acatgatgat caagacactc gtgatcgacg tcgccttcgt cacaaccgta gaggtatggg 1500 tggcaaccgc cgacgcgagg tacacaataa tgatgatgct ttcagtaaga ttaaatttaa 1560 gataccccct tttgatggta aatatgaccc tgatgcttac atcacttggg agattgctgt 1620 tgatcaaaag tttgcatgtc atgaatttcc tgagactaca cgtgttaggg ctgctactag 1680 tgagtttaca gattttgctt ctgtttggtg gatagaatat ggaaagaaaa atcctaataa 1740 cttacctaga acttgggatg cgctgaaaag ggccatgaga gctagatttg ttccatctta 1800 ctatgcgcgt gatatgataa ataagttgca gcaattaaga caaggtgcta aaagtgtaga 1860 agaatattat caggaattac aaacgggtat gttgcgttgt aacctagagg aggatgagga 1920 accggctatg gctagatttt tgggtgggtt aaatcgggaa attcaggaca tcctcgctta 1980 caaagaatac aataatgtaa cccgtttgtt tcatcttgct tgtaaagctg aaagggaagt 2040 gcagggacga cgtgctagcg caaggagtaa tatttctgca gggaaggcta attcatggca 2100 gcaacgcgtg gcttcaactc catctacacg tatttctact ccatcatcta gtgacaagac 2160 tcgagctgcc cccaccaatt cagttgcgaa gacgatgcaa aagcctgctg cgagtacttc 2220 atccgtggca tcgacgggta gaacaagcaa catacaatgt caccggtgca agggatatgg 2280 gcacatgatg cgtgactgtc caaacaagcg agttatgatt gtcagggatg atggtgagta 2340 ctcatctgct agtgattttg atgaggatac gcttgcactg cttgcgactg accatgcagg 2400 taatgaagat caaatagaag aacatattaa tgcaggtgaa gcggaccact atgagagctt 2460 gatcgtgcag cgagtgctta gtgcacaaat ggagatggcg gagcaaaatc agcgacacat 2520 tttattccaa acaaagtgtg tcatcaaaga gcgttcttgt cgcatgatca ttgatggagg 2580 tagctgcaac aacttggcaa gcagcgatat ggtgcagaag cttgccctca acaccaaacc 2640 acacccgcat ccctactaca tccaatggct gaacaacagt ggtaaggcaa aggtaactag 2700 acttgtgaga attaattttt ccatcggatc ctacaaagat attgttgaat gtgatgttgt 2760 gcctatgcaa gcttgtaaca ttctgctagg tagaccttgg caatttgata gagattctat 2820 gcatcatggt agatcaaatc agtattcttt tctataccat gatcgcaaaa ttgtgttgca 2880 tcctatgtcc cctgaaacta ttatgcaaac tgatgttgct agggctacta aagcaaagag 2940 cgagagcaat aaaaatgata aatctgtaat tggtaacaaa gatgagataa aactgaaagg 3000 acgttgtatg atagctacca aatcagatat taatgagttc aatgcatcca cttctgttgc 3060 ttatgctttg atatgcaagg atgctttgat ttcaattgag gatatgcaat gttctttgcc 3120 ccctgctgtt gctaacgttt tgcaggagta ttctgatgtg tttccaagtg aggtaccagc 3180 ggggctgcct ccactacgcg ggattgagca ccaaattgat cttattcctg gagcagtttt 3240 gccaaatcgt gcaccataca ggacaaaccc ggaggaaaca aaggaaattc agcgacaagt 3300 gcaagaacta ctagacaaag gttatgtccg agaatctctt agtccttgtg ctgttccagt 3360 aattttagtg cctaagaaag atggaacatg gcgtatgtgt gttgattgta gagctattaa 3420 taatatcacc attcgatatc gacaccctat tccacgatta gatgatatgc tagatgagct 3480 gagtggtgct gttgtgtttt caaaagttga tttacgtagt gggtaccacc agattcgtat 3540 gaaattggga gatgaatgga aaactgcttt caaaactaag ttcggtttgt atgagtggtt 3600 agtcatgcct tttgggttaa ctaatgcacc tagtactttc atgagattaa tgaacgaggt 3660 tttgcgtgct ttcattggga aatttgttgt cgtatatttt gatgacatat tgatttacag 3720 caaatcattg gatgaacatc ttgatcattt acgtgctgtt tttaatgcac tacgcgaggc 3780 acgtttattt ggtaaccttg agaagtgcac cttttgcacc gatcgagtgt cttttcttgg 3840 ttatgttgtg actccacagg gaattgaggt tgatcaagcc aaggtggaag ctatacaggg 3900 atggcctgtc ccaaatacta tcacccaggt gcggagtttc ctaggacttg ctggattcta 3960 tcgccgtttt gtgaaggatt tcagcaccat tgctgcacca ttgaatgagc ttacaaagaa 4020 gggggtgcct tttgattggg gcaaagcaca agagaattca ttcaacatgt tgaaagataa 4080 gttaactcat gcacctctcc tacaacttcc tgattttaat aagacttttg agcttgaatg 4140 tgatgctagt ggaattggtt tgggaggtgt tttattacaa gagggaaaac ctattgcata 4200 ttttagtgag aaattgagtg ggcctgttct caattattca acttatgata aagaactcta 4260 tgctcttgtt agaacattag agacatggca gcattatttg tggcccaaag agtttattat 4320 ccattctgat catgaatctt tgaaacatat tcgtagtcaa ggaaaactga atcgtaggca 4380 tgcaaaatgg gttgaattta ttgaatcttt tccttatatt attaagcaca agaaagggaa 4440 ggaaaatatt attgctgatg ctttatcacg gagatatact ttgctgaatc aacttgatta 4500 caagatattt gggttagaaa caattaaaga ccaatatgtt catgatgctg attttagaga 4560 cgtgttgctg cattgtaaag atggaaaagg gtggaataaa ttcatcgtta gtgatgggtt 4620 tgtgtttaga gctaacaagc tatgcattcc agctagctct gttcgtttgt tgttgttgca 4680 ggaagcgcat ggaggtggct tgatgggaca ttttggagca aagaagaccg aggacatact 4740 tgctggtcat ttcttttggc caaggatgaa gagagatgtg gagaggtttg ttgctcgttg 4800 cacaacatgt caaaaggcaa agtcacggtt aaatccccac ggtttgtatt tacctcttcc 4860 tgttcctaat gctccttggg aggatatatc tatggatttt gtgttgggac taccaaggac 4920 taggagggga cgtgatagtg tgtttgtggt tgttgataga ttttctaaga tggcacattt 4980 cataccatgt cataaaactg atgatgctac aaatattgct gatttgttct ttcgagaaat 5040 tgttcgctta catggtgtgc ccaacacaat tgtttctgat cgtgatgcta aatttcttag 5100 tcatttttgg aagactttgt ggttcaaatt ggggactaag cttttatttt ccaccacttg 5160 tcatccccaa actgatggtc aaactgaagt tgttaataga actttatcca ctatgttaag 5220 ggctgtttta aagaagaata ttaagatgtg ggaagaatgt ttgcctcata ttgagttcgc 5280 ctataatcgt tcattgcatt ctactacaaa aatgtgtcct tttgagattg tctatggctt 5340 cttgccacgt gctcctattg atttaatgcc tttgccaagt tctgaaaaaa taaattttga 5400 tgctaagcaa cgtgctgaat tgatgttaaa attgcatgaa gccactaaac aaaacataga 5460 gcgcatgaat gctaagtaca aatgcgctgg agataaaggt agaaagcaat tgattctgga 5520 acctggggat ttggtttggt tgcatttgcg aaaagataga tttccagaac tgagaaaatc 5580 caaattgatg cctagagctg atggtccttt taaagtgctg caacgaatta atgagaatgc 5640 atataagctt gatcttcctg cagattttgg ggttagtccc acatttaaca ttgcagattt 5700 gaagccttat ttgggtgagg aagatgagct tgagtcgagg acgactcaaa tgcaagaaag 5760 ggagga 5766 // ID Copia1_HV repbase; DNA; GRAS; 5141 BP. XX AC . XX DT 06-FEB-2003 (Rel. 8.01, Created) DT 06-FEB-2003 (Rel. 8.01, Last updated, Version 1) XX DE Copia-like LTR retrotransposon. XX KW Copia; LTR Retrotransposon; Transposable Element; KW COPIA superfamily; Copia1_HV; HORPIA; Katarina; TREP1162; TREP730; KW endogenous retrovirus; Non-LTR retrotransposon. XX OS Hordeum vulgare OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Hordeum. XX SQ Sequence 5141 BP; 1499 A; 1178 C; 1385 G; 1079 T; 0 other; tgtagatgtt aatcatgttg ctcatgtagg attaggaaag aaagccaaac cgagtcctag 60 tagtattagg attcctagtc ctagtctatt tccgtaggcc cttggtggac gtgtataaaa 120 gacaccctag gggtgttgat tgtaacacca gaaaaacgaa aagcaataca aagcaaaagc 180 tcgacacggg cctttagcca tcaaatccat cgatcagttt ttattcgtgt cgctagttac 240 gcaagttccg tcaagtagcc ggccgaagca agaattgtgt aggcacgcct gtacagctac 300 atacgcacgt tcaaaagcca acaattggta tcagagcctc gacgatctac gatatacgat 360 gacggacagc gacgctgagt cggtcaagtc ctggcagcgg cgggtgccaa ggcgaacaag 420 aacggcgaca aggtgaagaa gggcgtcaag tcagcaacca gtggtgaagg aacgagcggc 480 gctaacgtcc aggcgcatcg caacatcccc atccagtacc cgatgctcac cgacgccaac 540 tacgacgtgt ggacggtgaa gatgaagatt attctttgat cccttcgagt gtgggaggcc 600 atcacggacg acgacgtcga cgaggagcgc gatgaaggtg ccatggccgc catagcccag 660 tctgtgccgg attccgtgct gatgacattg gcggagttcg agacggcaag agaggcgtgg 720 aacgcactca aggagatgag gatcagagaa gatcgcgtca ccaaggctcg ggcacaagtg 780 ctgaagcgcc aatttcacaa gttgcagatg gaggaaactg aatctgtgaa tgactacgcc 840 atgcctctta ctactttggt gggagagatc cgcgcgcttg gtgcaaagct cgatgagacc 900 gagatcgtgc agaaattttt cagttctgtc actgataaat tcacgtacat catcggcacg 960 ctcgagcaac tttacgacat cgacgacatg accataacgg aggcgatcag acgattgccg 1020 acatgagaag agaatgctcc tggctgtaag aaacgcaaaa gaggacgtat gagaccaact 1080 catgtactcg cgcacagatc gggaagaccc aagtaacaaa gtgaaggcga gatcggtggc 1140 gaaggctcaa ccaacacgaa aggcgatgga caaaccgaaa aaggcaacgt gaaaacgcaa 1200 accacaaggt catagtaagg cgggacaatc tataagagca gaaaccacag aactaggact 1260 cgtccgaagt caactgctat aactgcaata acatggctca ccttgcgaac aatagtccaa 1320 agcctaacaa gcgggagatc aaggcaaatt tggcaaagca ggaagacgaa ggtccaggtc 1380 ttctgatgtc cgaagtttgt gatctcgctg aaacggtggt tgtgaaacca agccgaaagg 1440 tgctacttca tgaggaaaaa gtgacaccaa agttatccgg tgatcagaac gtgtcgtggt 1500 atctagacac gggtgccagt aaccacatga cggggtgcaa ggagaaattc ctcgagctgg 1560 aattcgatgt tgaaggctcg gtcaagttcg gtgatggttc agctgtggag atttgcgggc 1620 aaggatctgt cctctttgcg ggtctcacag gcgaacatcg catactcacc ggagtgtact 1680 acatcccacg gctgcgcaac aacatcatct ctattgggaa gcttgacgag aatggatgca 1740 aggtgaatat agagagcgga gtgatgacga tcttcgacaa cctccgaaac gtgctagctc 1800 atgttaatcg cacacggaat acgctctata tcctcaacct tgatcaatct caaccggagt 1860 ggtggcttgc caagagtgat gatgatttgt ggttatggca tgctagattt ggacacgtta 1920 acttctacgc cttggaaaag atgtcaaaga tgcagatggt atccgggatg ccagttatcg 1980 accatgttga tcgaatatgt gacgggtgct tggttggaaa acagcaccgc aggccattcc 2040 ctgctcagtc tacctatcgt gcaagtgatg cactcaagct gctccatggt gatctatgtg 2100 gccctatcac cccggcaact cacgctggaa agaagtattt cttccttgtg gtagacgact 2160 actcgagata tatgtgggtc attctcctac gatctaaaga tgaggcgttt gaagcgttca 2220 agaaattgaa ggccgcaaca gagatggaac acaagctgaa ggttcgcgct ctacggacag 2280 atcgcggcgg agagtttacg tcgaattagt tcaacgacta ctacgagaag attggcataa 2340 agaggttcct cacggcacct tacacgccgc agcagaatgg ggtcgttgaa aggcgcaatc 2400 gaaccgtcgt tgacatggca aggaatttac tcaagagcaa gaacctgccg gggacttttt 2460 ggggagaagc tgtctcgacg gcggtctatc ttctcaaccg ggctccaacg aaggcggtgg 2520 tcggcaagac tccgtatgaa gcaatttacg gacgtaagcc gaatgtgtct catctacgga 2580 cattcgggtg cgtggcacat gtgaagacgg cggaaccgca cctctcaaag cttgccgatc 2640 gtagcaccaa gatggtgttc atcggatacg agagcagttc tggcaccaag gcataccgtt 2700 tctacgatcc acaaaccaag cgtctacgga tttcacgcga cttcgtgttt gaagaaaacc 2760 aagcgtggaa ttggagcgcc gcagccgacg atgctccaaa cagtaacata tttgcagttg 2820 aatttccaac tgatgatgat gcaggggagg atgtccaggt gattggcaag acgcccaaac 2880 caaggtgacc acaatggtag tgatcatcat ggtgccgaca ccgacgacga cgcgcatagg 2940 tcgcaaggag atagcgacaa cgccgcgcac gacacaggcg gagatctcga cgacaacatc 3000 gacaacgagg cgcatagtga cgacgacaat caagatgatg gtcacggtca cgacgactac 3060 gccgacgaca cggatgtcga tgacacacca aggtctcagc cgtcttcctc aagtgcatca 3120 acaccgacac aatttgtgtc gcctccctcg caagccacaa cggactcctc agggcctcgt 3180 cgctacaaga ccctcaagaa agtctacaag tacacaaagc cagttacgct cgagtactcc 3240 ggactatgtc tgttcggagt tgaggagcgg cgaacttcat agaggcgagc aaaagtccta 3300 gctggacgca caccatggat gaggagatga aggcaattga gagcaatggc acgtggactt 3360 tggtaacccg acctccaaac caaaagacga taggtttgaa gtgggtttac aagttaaaga 3420 aggacacaga gggtgccatt gtgaagtaca aggcaagact cgttgcaaag ggctacgtac 3480 aacgtcaagg agttgactat gatgaggtgt ttgcatcggt tgctcgaatc gagacggtga 3540 gagtgctcct agctttggca gcacaagagg attggaaggt tcatcatatg gatgttaaat 3600 ccgctttcct caacggcgat ctcacaggag aagtgtacgt ggaacaaccc ctcggctacg 3660 agaagaaagg cgaagaaggg aaagtttaca agctcaagaa ggcactttac gggttgaagc 3720 aagcgccaag agcttggaac tcaaagttag accgaagtct ggtctcgctc gggttcaaga 3780 gatgtcccct cgagcacgca gtctatacaa agaactccaa aggctcaaac ctgttagttg 3840 gagtttatgt cgacgatctg attatcaccg gagatagcgt acaagaaatt gaacgtttca 3900 aggcgcaaat gaagaacaag tttagcatga gtgatctggg attactcagc tattacttgg 3960 gcatcgaagt gaagcaaagc tccggagaga tttccctatg tcaatcggct tacgcggtca 4020 agttattgga caagtgtggc atgtcagatt gctacgcgac acaagttcca atggaccaac 4080 gtcacaagtt gagcaagcgt agctcaaatc cgccggtgga caccacaatg tatcgaagcg 4140 ttgtgggtag cctaagatac ttggtgcata cccgacctga cttggcttat tcagtcggga 4200 tcgtgagtcg tttcatggag aaaccgacaa ccgaacacat gagcgcggtc aatcaaattc 4260 tacgctatgt gaaaggcaca attaatcttg gctgcacgta cagaaaggga aaggaaggat 4320 tgatccttcg tggatattca gatagtgaca tggcaggtga tgttgatgac cgaaagagca 4380 caacgggcat ggttttctac cttggcccga attcgattag ctggaattct cagaagcaaa 4440 aggtggtggc actgtcttca tgcgaggcag aatacatagc ggcaagcacg gcggcttgtc 4500 aagcagtgtg gctgagaaga ctcctagcta ttcttgcaaa gcgggaggtg cagaaggtgt 4560 cactgaagat cgataaccaa gctgcaatct cgttgtgcaa aaattcggtt catcacgaaa 4620 ggagcaagca catagatacc cggttccacc atatccggga gtgcattgaa gaagggttga 4680 tcgaggttca acatgtgaac acgaaagacc aacttgccga tattttcacc aagtccctcg 4740 gtcgacagaa gttcatcgag atgaggggga aagtcggagt gcaagaagtg aagtcaagca 4800 acaagattaa ggaggtgaat gtagatgtta atcatgttgc tcatgtagga ttaggaaaga 4860 aagccaaacc gagtcctagt agtattagga ttcctagtcc tagtctattt ccatagtccc 4920 ttgtggacgt gtataaaaga caccctaggg gtgttgactg taacaccaga aaaacgaaaa 4980 gcaatacaaa gcaaaagctc gacacgtgcc tttagccatc aaatccatcg atcagttttt 5040 attcgtgtcg ctagttacgc aagtaccgtc aagtagccgg tcgaagcaag aatcgtgtag 5100 gcacgcctgt acagctacat acgcacgttc aaaagccaac a 5141 // ID HUCK1-LTR_ZM repbase; DNA; GRAS; 1774 BP. XX AC . XX DT 11-JUL-2003 (Rel. 8.06, Created) DT 11-JUL-2003 (Rel. 8.06, Last updated, Version 1) XX DE Zea mays retrotransposon Huck-1 LTR - a consensus. XX KW LTR Retrotransposon; Transposable Element; HUCK1-I_ZM; KW HUCK1-LTR_ZM. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RA SanMiguel J.P., Gaut S.B., Tikhonov A., Nakajima Y. RA and Bennetzen L.J.; RT "The Paleontology of Intergene Retrotransposons of Maize: Dating RT the Strata."; RL Unpublished. XX RN [2] RA SanMiguel J.P.; RT "Direct submission."; RL Direct Submission to Genbank (23-FEB-1998)Biological Sciences, RL Purdue University, Hansen LSRB Rm 339, West Lafayette, IN 47907, RL USA. XX RN [3] RP 1-1774 RA Jurka J.; RT "A consensus LTR for Huck-1 retrotransposon from Zea mays."; RL Direct Submission to Repbase Update (30-JUN-2003). XX DR [3] (Consensus) XX SQ Sequence 1774 BP; 340 A; 685 C; 491 G; 246 T; 12 other; tgtcggggac cataattagg ggtaccctca agactcctaa ttctcagctg gtaaccccca 60 tcagcacaaa gctgcaaagg cctgatgggt gcgattaagg tcagggatcg gtccattcga 120 gggactcgat cacgcctcgc ccgagccyag cctcgggcaa gggcagccga ccccggagga 180 tttccgtctc gcccgaggcc cccctccagc gacggacaca cctccggctc gcccgaggcc 240 cagttcgggt aggcttcgcc aagaagcaac cttggccaaa tcgccacacc aaccgaccaa 300 atcgcagggg catttaatgc aaaggtggcc tgacaccttt atcctgacgc gcgccctcca 360 gtcgacagag ccgaagtgac cgcagtcact tcgccgctcc actgaccggc ctgacagaag 420 gacagcgccg cctgcgccgc tccgactgct gtgccactcg acagagtgag gctgacaggc 480 agccaggccc ggcctcaggc rccataggaa actccgcttc gcccgacccc agggctcgga 540 ctcgggctca gccccggaag acggcgaact ccgctccgcc cgaccccagg gctcggactc 600 gggctcagcc ccggaagacg gcgaactccg ctccgcccga ccccagggct cggactcggg 660 ctcagccccg gaagacggcg aactccgctc cgcccgaccc cagggctcgg actcgggctc 720 agccccggaa gacggcgaac tccgctccgc ccgaccccag ggctcggact cgggctaagc 780 cccggaagac ggcgaactcc gctccgcccg accccagggc tcggactcgg gctaagaccc 840 ggaagacgrc gaaactccgc tccgcccgac cccagggctc ggactcgggc tcagccccgg 900 aagacgacga aactccgctt cgcccgaccc cagggctcgg actcagccct ggcctcagcc 960 gaacgrtctc cgcctcgccc gacccagggg ctcggactcg acctcggcct cggaagacag 1020 actcgacctc gacctcggag gagcctccac gtcgcccaac ctagggcacg gaccgaccac 1080 gtcaacagga ggcgccatca ttaccctacc ccgagctgac tcaggctacg gggaacaaga 1140 ccggcgtccc atctggctcg ctccgccaga caagyaatga tggcgccccg cacgctctat 1200 gacgacggcg gctctcagcy cccttacgga agcaagagga cgtcagcaag gactcgacag 1260 cyccgacagc tgtccttccg ccaggctcca gcgctcctcc gacggccacg acatcacacg 1320 aacagggtgc caaaacctct ccggctgcca cgatggcatg tacttagggc gctagctctc 1380 cttccgctag acacgttagc actctgctac accccccatt gtacacctgg atcctctcct 1440 tacgcctata aaaggaagga ccagggccct cttacaagar ggttggccgc gcggggacga 1500 ggacgggaca ggcgctcgck tgaggccgct cgcttccctc tctctcccgc gtggacgctt 1560 gtaacccccc tactgcaagc gcacccatcc gacctgggcg cgggacaaac acgaaggccg 1620 cgggatttcc acctctcact cacgcctgtc tccggcygcc tcgcytcttt ccccccttcg 1680 cgctccgyct cgcgctcgac ccatctgggc tggggcacgc ggcgacaatt cactcgtcgg 1740 cccgagggac ccccccggtc tcgaaacgcc gaca 1774 // ID FATIMA1_TM_LTR repbase; DNA; GRAS; 481 BP. XX AC AF326781; XX DT 16-OCT-2002 (Rel. 4.3, Created) DT 16-OCT-2002 (Rel. 4.3, Last updated, Version 1) XX DE Triticum monococcum gypsy-type retrotransposon, FATIMA1_TM_LTR, DE long terminal repeat. XX KW Long terminal repeat; retrotransposon; GYPSY superfamily; TREP252; KW FATIMA1_TM_LTR. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RP 1-481 RA Wicker T., Stein N., Albar L., Feuillet C., Schlagenhauf E. RA and Keller B.; RT "Analysis of a contiguous 211 kb sequence in diploid wheat RT (Triticum monococcum L.) reveals multiple mechanisms of genome RT evolution."; RL Plant J 26(3), 307-316 (2001). XX RN [2] RP 1-481 RA Dubcovsky J.; RT "Direct Submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AF326781; Positions 145640 146120. XX SQ Sequence 481 BP; 126 A; 111 C; 127 G; 117 T; 0 other; tgtcggtgtc aaaaccggcg gatctcgggt agggggtccc gaactgtgcg tctaggcgga 60 tggtaacagg agacaaggga aacaatgttt tacccaggtt cgggccctct tgatggaggt 120 aaaaccctac gtcctgcttg attaatattg atgatatggg tagtacaaga gtagatctac 180 cgcgagatca aggagtctaa accctagaag ctagcctatg gtatgattgt tgtatgatga 240 agttgtccta cggactaaaa ccctccggtt tatatagaca ccagaggggg ttagggttac 300 acaaagtcgg ttacaatggt aggagatctt gaatatctgc atcgccaggc ttgccttcca 360 cgccaaggaa agtcccatcc ggacacggga caaagtcttc aatcttgtat cttcatagtc 420 ctggagtccg gctgaaggta tagtccggct acccgaacac cccctaatcc tggactcctc 480 a 481 // ID PREM2_ZM_LTR repbase; DNA; GRAS; 1427 BP. XX AC AF090447; XX DT 08-NOV-2002 (Rel. 4.3, Created) DT 08-NOV-2002 (Rel. 4.3, Last updated, Version 1) XX DE Zea mays copia-type retrotransposon PREM2_ZM_LTR, long terminal DE repeat. XX KW target site duplication; Long terminal repeat; retrotransposon; KW COPIA superfamily; PREM2_ZM_LTR. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-1427 RA Song R., Llaca V. and Messing J.; RT "Direct Submission."; RL Direct Submission to Genbank (04-SEP-1998). XX RN [2] RP 1-1427 RA Llaca V., Lou A., Young S. and Messing J.; RT "Direct Submission."; RL Direct Submission to Genbank (10-NOV-1998). XX RN [3] RP 1-1427 RA Song R., Llaca V. and Messing J.; RT "Direct Submission."; RL Direct Submission to Genbank (12-APR-2001). XX RN [4] RP 1-1427 RA Song R., Llaca V. and Messing J.; RT "Direct Submission."; RL Direct Submission to Genbank (24-APR-2001). XX DR Genbank; AF090447; Positions 50575 52001. XX SQ Sequence 1427 BP; 321 A; 366 C; 406 G; 334 T; 0 other; tgatagtcgc ctagaggggg ggtgaatagg gcgaaactga aatttacaaa aataatcaca 60 actacaagcc ggggttagcg ttagtaataa taaatgagtc cgcaagagag ggcgcaaaac 120 aaatcgcaag caaataagga gagtgacacg tggatttgtt ttaccgaggt tcggttcttg 180 caaacctact ccccgttgag gaggccacaa aggccgggtc tctttcaacc cttccctctc 240 tcaaacggtc cctcggaccg agtgagcttt ccttcttctc aatcaaccgg gaacaaaact 300 tccccgcaag ggccaccaca caattggtgc ctcttgcctc ggttacaatt gagtgttgat 360 cacaagagca caagagaaag aaagaatgcg atccaagcgc aagagctcaa aagaacacgg 420 caaatcactc tctctggtca ctagggtttt gtgtggaatt ggagaggatt tgatctcttt 480 gaatgtgtct agaattgaat gtctagctct tgtaagtggt tgagaagtgg aaaacttgga 540 tggcaatgaa tgtggggtgg ttggggtatt tatagcccca accaccaaat gtggccgttg 600 gggagccagt ctgctcgatg gcgcaccgga cagtccggtg cacaccggac atgtccggtg 660 cccctgccac gtcatcagta ccgttggaat ctgaacgttg gagttctgac ttgtgggcca 720 cccttgatgt ccggtggcgc accggacagc tggttggggt atttagcccc aaccaccaaa 780 tgtggccgtt ggggagccag tctgctcgat ggcgcaccgg acagtccggt gcacaccgga 840 catgtccggt gcccctgcca cgtcatcagt accgttggaa tctgaccgtt ggagttctga 900 cttgtgggcc acccttgatg tccggtggcg caccggacag ctcctgttca ttgtccggtg 960 cgccagtatg ggcaatcctg acgtctgcgc gcgctgcggc gcatttaatg tctctgcagg 1020 tagccgttgg cgcgggatag ccgttgcact ggagtcacac cggacagtcc ggtgcacacc 1080 ggacatgtcc ggtgaattat agcggacgag ccgttggctt ttcccgaagc tgaagagttc 1140 ctgaggccgc ctctccatgg cgcaccggac actgtccggt gtacaccgga cagtccggtg 1200 aattatagag cgagggcccc tggaaatttc cgaaggtggc gagttcgagc tggagtcccc 1260 tggtgcaccg gacactgtcc ggtggtgtgt ccggtgcgcc cagaccagag ggccttcggt 1320 tggctctttg cccttttgtt gaacccaaca cttggtcatt ttattggcta tgttgtgaac 1380 ctttgacacc tgtataactt atacactaga acagactagt tagtcca 1427 // ID AsDRF1 repbase; DNA; GRAS; 1448 BP. XX AC FJ843102; XX DT 31-MAR-2009 (Rel. 14.03, Created) DT 31-MAR-2009 (Rel. 14.03, Last updated, Version 1) XX DE A non-autonomous DNA transposon inserted in the first and third DE intron of the AsDRF1 gene. XX KW DNA transposon; Transposable Element; Nonautonomous; AsDRF1. XX OS Aegilops speltoides OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Aegilops. XX RN [1] RP 1-1448 RA Karthikeyan T., Latini.A ., Galeffi.P . and Porceddu.E. .; RG Scuola Superiore Sant Anna, ENEA; RT "A non-autonomous DNA transposon is inserted in the first and RT third intron of the AsDRF1 gene."; RL Repbase Reports 9(3), 726-726 (2009). XX DR EMBL/GenBank/DDBJ; FJ843102; Positions 599 2046. XX CC An AsDRF1 non-autonomous DNA transposon is inserted in the first CC and third intron of the AsDRF1 gene. Terminal inverted repeats CC (TIR) approximately 32bp long were observed with 3 mismatches and CC a single deletion. Target site duplications (TSD) approximately CC 4bp long were observed with a single mismatch. The ~32bp TIR are CC 90% identical to each other. Apart from the ~32bp TIR, we also CC observed the presence of 18bp (88% identical each other) TIR with CC 2 mismatches. 2bp-long TSDs were observed for this 18bp TIR. The CC 18bp TIR is flanked by the ~32bp TIR. The 18bp TIR shares 100% CC homology with 18bp of the ~32bp TIR. Between the 18bp TIR and CC ~32bp TIR, a fragment approximately 93bp long was observed at the CC 5? end. At the 3? end, the 18bp TIR shares 88% homology with 18bp CC of the ~32bp TIR (exactly 31bp) TIR, since the 18bp TIR has 2bp CC mismatches with 18bp of the ~32bp TIR. Between the 18bp and ~32bp CC (exactly 31bp) TIRs, there is a fragment approximately 89bp long. CC These 18bp and ~32bp TIRs are nested terminal inverted repeats of CC this non-autonomous DNA transposon. It?s clearly evident that CC transposase carried the 18bp from some other part of the genome CC and recognized the ~32bp TIR, since it has the homology with the CC 18bp. Then, this 18bp either inserted at the region after 93bp CC from the ~32bp TIR or the 18bp enlarged up to ~32bp upon the CC selective insertion of this 18bp TIR+2bpTSD on 12bp TIR, which CC leads to the formation of ~32bp TIR with 4bp TSD. CC Other than the usual TSD formation, we also observed that 4bp CC (TGTT) is an internally duplicated region (Internal target site CC duplication, ITSD), flanked by 18bp TIR. The ITSD was possibly CC generated upon the sequence insertion in the 18bp inverted CC repeat, anchoring 4bp to become a transposon. The TSD is CC generally formed due to transposon insertion. On the other hand, CC during the sequence insertion in an 18bp inverted repeat CC anchoring, 4bp become a cohesive end, perhaps due to transposase CC (type II restriction enzyme?). Subsequent gap filling of CC overhanging 4bp leads to the formation of ITSDs. Generally, the CC palindromic sequence becomes a transposon and it is also CC possible, due to this ITSD formation, for the inverted repeat CC (anchoring few base pairs) to become a transposon as a CC palindromic sequence. This inverted repeat (or palindromic CC sequence) derived DNA transposon could move from one part to CC another part of the genome. After several generations, CC hybridizations and transpositions in various regions of the CC genome, the TIR or TSD or ITSD or any region of the DNA might be CC gradually altered due to spontaneous mutation. CC Conclusion: CC According to our analysis, the transposase possibly carried a CC 1191bp transposon from some other part of the genome and CC recognized the 32bp TIR site (which is possibly another CC transposon of 253bp with 4bp TSD) due to the homology of the CC 18bp, then inserted after ~90bp internally on TC(a target site), CC which leads to the formation of 2bp TSD. Finally, it became a CC nested non-autonomous DNA transposon upon the insertion of the CC 1191bp non-autonomous DNA transposopable element on the already CC existing 253bp non-autonomous DNA transposable element and the CC final length became 1448bp including newly formed TSD of 2bp at CC both terminals. CC Link to supplemental materials: CC ( http://www.girinst.org/server/publ/AsDRF1/ ). XX SQ Sequence 1448 BP; 308 A; 267 C; 331 G; 542 T; 0 other; actgtaatca gtaccatctc cacagaaaca attgtaccag ttgttctgct cacatgacca 60 ggttccttca ctggattggg acttgggagt gatgtttatg gcgcctagca taaaatttgt 120 taaattcatt cagtaccatc tccacagaat gtttgtacga gcatgggacc atgtgtatgt 180 ctccctagga taaaaaagtt gttaacttca gtcaatatca tcagtttgtt ggtatcctac 240 ccttggggcc tgtttgtttc ctggattagg agtgatgttt atgttgccta gcatagaagt 300 tggcaacttc agtcagtact aagttggctg gacctatcta acttgttctg ttgttgcatc 360 atgttgtcaa attgttgtct tgtttgtcag ttttgttagt ttatccactc cagtctctga 420 tatgtcttgt ttgtctgttt tgttcgttta tccagtctct gatatgtctt gtttgtcagt 480 tttgttagtt catccagtct ctgatatgtg ttgtcctgtt tgtcttttct tttcggtaac 540 tagaacttgt ggagcagagg aaagtacccg gagtcatgtt ctcgtcaaac caataggtat 600 gctgctttga tcactcctgt aaacaaaagc atgaactatg actgagatgg gtacctcgcg 660 tttgactctg gagaagtcag cagaaataac tgtttgtgtt tcagcaggaa gcagtaatct 720 tccctgtaat gaatatgcac tcttggcgcg gcaaaacccc aagggagatg cgccgccagt 780 ggcatctatt ctgcggtgtg tttaaccgtt ctgtgtctgg ctgctctatc tattatagag 840 catgtgagct atgactatga gttccggcca accttttggc tgttttgcct taccattcta 900 atagttggtt tcatagtggc tgctgttgaa ccattgtatt gctgttggtt gatggtatca 960 ctctttgtgg atgtgatctc atttaaactg actctaggtg ttgttgaaca gttctgtact 1020 aagagttcca gccaaccttt ggaccatttt gccttttcat tctaatagtt ggtttcatag 1080 tggctgctgt tgaaccattg tcttgctgtt ggttgatggt accactctct gtggatgtga 1140 tctcacctaa gactgactct aggtggtgtt aaacagtttt gtagtggcta attttttgca 1200 tgtcctttct gatttatcag tcttcaagta tcagggtcta gaagtcaggt ctcatcttgt 1260 ttgttttatt ggagccgatt agtatgattt agcatggtat tgttttctgt ggagatggta 1320 tgtccgcaag gaagtttata tgtccctgtt cctgtacatc tgttcctgtg gggatggtct 1380 gtttgtgtac atttagtaac agtttaatcg ttttacaaat gtttctgtgg agattgtctg 1440 tttaagtg 1448 // ID CANDYSTRIPE1 repbase; DNA; GRAS; 23018 BP. XX AC AF206660; XX DT 13-APR-2000 (Rel. 5.04, Created) DT 19-AUG-2005 (Rel. 9.07, Last updated, Version 3) XX DE CANDYSTRIPE1 is a putative En/Spm-like nonautonomous DNA DE transposon. XX KW EnSpm; DNA transposon; Transposable Element; KW 3 bp target site duplication; En/Spm superfamily; CACTA-like TIRs; KW CANDYSTRIPE1. XX OS Sorghum bicolor OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Sorghum. XX RN [1] RP 1-23018 RA Chopra S., Brendel V., Zhang J., Axtell D.J. and Peterson T.; RT "Molecular characterization of a mutable pigmentation phenotype RT and isolation of the first active transposable element from RT Sorghum bicolor."; RL Proc. Natl. Acad. Sci. U.S.A 96(26), 15330-15335 (1999). XX DR GenBank; AF206660; Positions 1 23018. XX CC CANDYSTRIPE1 does not encode for a transposase and it may be a CC composite nonautonomous DNA transposon. XX SQ Sequence 23018 BP; 6807 A; 4788 C; 4603 G; 6820 T; 0 other; cactatgtga aaaaagctta aattcgcatg tcatgtataa gaactattaa acatgcgtct 60 gtaataagaa ttaacacaga cgtctgttga atcacaagcg tctgtaataa gagtctcaat 120 aaacacacgt ctctgattat caataacaca gacgcgcatt gcacaggcga aaattacaga 180 cgtttgtttg gtgtacacgt ctgcaatatt cttatctcag acgtgcgttt aaagaggtgt 240 ctgtcctatt gttttggagc tgtgggcctc tagccgaatt gggcctgttt gagttgggcc 300 tagtgtccgg ttgatattct tttatactag acatctcata ataggaacag tcccaaaacc 360 ttcttttagt ctctagtaat tatataaaga aaaaggtcta cataatcccc caaactatct 420 aaggtggaat acttcatccc ccaaatataa aaacggatat tctacccctg aaactttcaa 480 aaccgatcaa ataaccccta aagtggtttt agaggatgat tttgtctttt tcttttttat 540 ttatttccgc tgaatctttg aaaaaacata ataaatcaca gaaaaatcat aaaatgaaaa 600 attcaatttt gttggactta tgatgagtag atctacagta tatttgactg gctacaatct 660 cagcctttga agaatcgatg actcttgctg acggagtggc ccacattttt acagacttta 720 aaggatcgat gcaaagtttt caaactgttc aaccaaaatt tcgggtactg ttcatccgaa 780 aatctgacaa cagctgtgca tctgaacatg caaaacatgc agcatcttat taaaatttat 840 gaactttcaa atgtccaatt acaaatacat gtccaaactg taaaaattac atgtgcaata 900 aaaatacatt gtacaaatgt ctatgacaaa tgtaaagata caaccggcaa aaactgatac 960 atgccagcat gcagtacaaa caaattacat gtccaacact ttcaaataga aatcatacaa 1020 atcaagacct attgaacaaa ccatttgcga tggagtcacg aaatgcattc atctgctcac 1080 attccgcaga ggtgggcgca gggacacact ccggctgatc catatatgct tcaggatgca 1140 caaagtttgg atgacggtca aggtgatcga agtcactatc aaatgcgcca ctcaatctca 1200 tgaaattatg gagagcacaa caagcaacta taatgtgtgt ttgggtttcc ggtggatagc 1260 ttgggacact caacaacata cgccacttca tcttcattac cccaaaggcc ctttcaatca 1320 catttcttag agacgagtgg gcatagttga atacctcttt tctacctcga ggttctgcgc 1380 cgttttgaaa gtcttgcaga tggtactcgc ttcccctgta cggtgcaagg tatccgggtc 1440 ggtttggata gcccgagtcc accagatagt atttccctag agcaccacca agctcctgta 1500 agcgtcaatg gtttgaatta gacaaaaata ttgaactctg tacaagttgt atacctgcag 1560 ggggatgagg aaacacatcc ttgtacgttg tcaaagcatc atcgaagact ctcatgtcat 1620 gcactgatcc gtcaaagtca catgcagcca gcacattctg tgttgttttg cccttcctac 1680 acaggtgctg aatgaacttg tccgatggca caaccatagg aacgtgagtg ccatctatag 1740 cccctataca tccgttgaag aaaggaaaaa acctacggtt ctgcagtcta tcatgcattg 1800 ttctaaataa taggtcccgg ggcgcaatga tgtcatcacc aagcttaagg acacacttca 1860 acactctatg aaacaggttg tgaacagttg ctagtgatct ctcaaatcta tcctcagctt 1920 gcctaacaga ttgtggtgca cctaccatcc acaggaacat tcctagggct tcaatagagg 1980 tagtttttgg gttcgatttg aggccatatc tatctgtcag taaagaatgt agcctaaaga 2040 acatatctgg ggtcatccta aacatgttgt agcatgaatt agcgttcgca agcttccttt 2100 gtacccattc caaaccagtt ataggtggaa ccctataagg acccctactg cagtacttct 2160 ctaaatgtga ggcatacatg tacttctcta aatgtgaggc atacatgtac gtaccagtca 2220 tgagaacagt aacttcctca tcatcctcgt ctaacatcag taatttcaac aacttagcac 2280 gtcgagactc ctgactacca cgggtattgc caatatctcc caacatcctc gtgccctccc 2340 ggtgtctgtt caagtgaaca acaacaacaa acaaatgagt tcaaattcag gcgttcaaat 2400 ttcatgcagc gcaccccaaa tgtcattcga actggtaatc accaatcggt aggccaagtg 2460 aaaataagat tcaaatatca ttcatgaaat aaaggttcaa caaacctgat acaataccat 2520 actgcatccc tccgactcac tacaagtgct acagaacata cattaataaa aacacaacac 2580 atgactactc taatgctgca cgacatatat gcatgcatga ggaggactag ttgccgaccg 2640 aggcatagtg ctcgatgacg gccaatctgc cttctggggt ggagttgatg aagaactcca 2700 tgaggttggg cactaggacg atcctcatga caccaagcca catcttgggt tggcttcaga 2760 tgcgccagct tctcgtgcga gctgctgcac gagctagatc ttgtcgtttt ggtcctcgtc 2820 atccttgtca atccccagcg aacagtccct aaatagtttc atgtttagac tgcatgatat 2880 tgctcacctt gcaaatgtct cgctgcatag cccgtacagc gctttgcttc ttggacttct 2940 tgttggggcg agcggctgtg ctgcgtgagc tgttgctcct cttgcaactc aggctgacag 3000 gggtgaactg ctcgtcttcc tcatcgtcca tcgtcgtcgc cgaggacaac ctctgtgcgg 3060 ccacgttgtc ccgaagcgta cgatgttgtt ccgtcgactg ctacgccact gaacatgcgg 3120 tccagctgtg ggaggtacgt aggccaccca tccttgagct tcttccactc aggatgtttc 3180 tgcattgtaa aaatgtgcat aagtgttgca attgtaggta ctgcatggat tgtatgtaac 3240 tggaagagcc agtggcactt acccccacac ttgtcctccc accatgaatc tggtgcaaga 3300 atggagccat cgtttcttca tccgagaccc gtgaatttgg ttcgcaggtc gttaatgaaa 3360 tgccacatgg ccttcaactg cctgacccta ctactgaatt ggtcattgtc atgaactaat 3420 cccgttgctg catagtaccg ttcagcaaca tccttccatc cccatttgct catgctaccc 3480 caaacacact ggcctaaatc taattgcatg caataaatat cacagaaagt gtgtgtgttt 3540 tcagaagtcc agttggccct gctagtttcg tgctgcaatg gacatgtgta aaaaacattc 3600 gcacaggaag aacacataga cattgcagca gagataagtg cagcgatagt gtgtactaga 3660 catgcatcaa aggaatgtaa agaagcttag aaaggaataa aggacactta ccgggatcct 3720 agggtttggg ttgtcgtcgc tgtcgtcgaa cgtgtcggac ggaggcgact gccggaagcg 3780 acgttgtctt ccacctcggg aacgcggggc gcttggagga cccataggaa cagggcgctc 3840 tggctccacg gacccgacac gacgtcgtcc gggccctcga actgccgttg tcccgccgcg 3900 acccgcgcgg aacacaggtg cagcaccggt gttcggggcc ggcacgcgaa cgggcggagg 3960 aaccgaagtg aagtcggctc cgccttctcc atatgcgtcg aggctggacc acccttcgcc 4020 ggcgttgaag tcgatgttgg agaacccaag gtggcttggg gtccgggttg gcgctggagc 4080 ggagcgctgg cgcgaggacg aatgactcgg aacgacgcgc ttcggagagg aagtcgcggg 4140 cggtgcggtc gtcgacgtat cgccggcgta tgtgttgtcg tggccgaaga atcgtcggcg 4200 ttgaagctcg ccgtggtagc cgtcgccgtt gaagccgtcc atggcgcttg ctgtgcgtcc 4260 aagagcaccg gatctgcacg cgttcgcggc ggatctgcac ctaccgccgg tggatctgga 4320 ggaggaaggt gtaatgccgc gcctgaacgg cggcagaggg gagaagagct agggttcggc 4380 cacgcgagag aaacggccgg tccacgctta tatacgagcc ggtgaccaca gttttttcgg 4440 tgaacagtgc ggcccgaata atgaaatttc ggcccaggcc cgtttagttc cgaaaaacgg 4500 aaaagtggcc cacaggccga aatattttcg gttttcgcaa cattaaaggc ctgcacgcct 4560 gcacctgaat gcctcttgcg cccaggcaca cactgtggac ggtgacccct gctgtgaaaa 4620 gtgatgccca catcacaagc caaacacggg cacgcatgca gccgaacaca ggcacgcgtg 4680 cagccaaaca caggcacgcg tgcagccaaa cacgggcagg cgtctcagtg tcgcaggtgt 4740 cgaacggaga accgagccca acacatgcgc atctactatt catacatttt ttttcttgtt 4800 ctatgtgggc ctacacacta tagctatcga actgtaatat atgttacttt tattactgct 4860 tgcaaggttc gcctgcacac tggagggtcc agttataaaa aattttagga aatcgatata 4920 ttcgtctggt caattctgac caaactattc gtctcatcaa atttaaccaa actgtgtaat 4980 taatttttat ttgcatctat atttaatact ttatacatac gtctaaagat ttgatattac 5040 ttagaatcta aaaaattttg taaacttttt ttaactaaac aaggcctcat gcgctcgatg 5100 aatcttttaa acttagttta ctccgtaatt aaacaatgtt tgtcaaataa aaacgaaacg 5160 actatctaaa atttttgaga actaaacaag accattactt gctcttagac ctggtttagt 5220 tcacaaaaaa tttgaatttt attactgtag cactttgttt ttatttaaca attattgtct 5280 aatcagagac taactaaact taaaaaattc gtctcggtgt aattagtttt tttatctata 5340 tttaatggtt catatgatac aagatttgat atgacggaga atcttgaaaa aaattggaac 5400 taaacaatgc ctaaggcctt ctgcagtgtg ctcttgaagt ggtgctaaaa ttctatcttt 5460 ccactttgag ccgatgccaa caacgatgct tgaaataaaa gattcgatgc atgtagaagc 5520 acccatgccc attcattaaa gaagtatttt gtttgctgtg cgagccagat tgcctctgca 5580 cctctgactc tcaagaatca aaatgcacca gcatccgagt ggtgctagtt ttgtttttta 5640 cagatttttg tgggcatcgc ttccacactg tggaaggtcc taagagagga cgaaggggat 5700 ctgttgattt gtttggagca tgatcgaggg tcgagcgggg gtgctataca ttgcaaggac 5760 aaaaaaggca caatagccat tttggtccct caactattac tcgaggctca atttcgtccc 5820 taaattttta aaacagccat tctactcctc aaactttagt tttaggctca gttttggcct 5880 acaactatga agatgatcgt ttcagtccct aaattttgta ttttggactc aatttcatcc 5940 ataaactatc aaagtgcatt taacttttta tttccaactt caattttgtc tattcaaaaa 6000 taaaacatta tattttaagc ataatttcat ccattcaata tatccatgta ttcttgaaga 6060 ataaatagtg ttcgatgtaa ctataattgc tcccacaaat atcaatttag ttggacatat 6120 ataaatggta caattataag gtaacactaa aaataacagc ttggaattat caatggccat 6180 gaaagagttt ttggataaat attatttttc tatcttcaat tgttggtggt gttggagcta 6240 atgatgtaca atagtgcagc attccgcgta caacatagaa gaagttcagt taaaaaataa 6300 aagttaaagg ataaaataca ctttaatagt tttaaaatga aattgagctc ataatacaaa 6360 gtttgaggac caaaacggac catcttcata gttctaagga tgaaactgag gccttgttta 6420 gttccgaaat ttttttagtt ttgtgtactg tagcattttg tttttatttg gtaaatattg 6480 tccaatcatg ggagtaacta ggcccaaaag attcatctcg cgatttacgg gtaaactgtg 6540 caattagttt ttgttttctt ctatatttaa tgctccatac atgtgccgca agattcgatg 6600 tgacggagaa tcttgaaaag tttttggttt tttgggtgaa ctaaacaagg cctgaaccta 6660 aaagtatact ctgaggacta aaacagtcgt tttgaaagtt tagggacgaa attgagcctg 6720 gagtaatagt tgagggacca aaatgactat tctgccgaca aaaaactaag agctatctag 6780 tcggttgtgg gccccccatc gacccctgtt attatttcgg atgctgctct caatgcaagc 6840 atccaagaag acccagggag acaaagatgg cacagtgcaa gcatcatccg gtagagtaaa 6900 aagtaaaagg caggaacgta ccagcgagac aagacgcagc gagacgacgc agcgagacaa 6960 gacgcagctg ccaggacagg tgctcttgaa ttcgtcccca gtagcgagga ccacgtgcac 7020 tcctctttct cttcactatt cccttcccta ttccttctcc atggtccatg tactgtagcg 7080 acttttgact tcctttatcg ccagcaaaca gtgtgcaaat gtagcaactt ttgacttgcc 7140 tataggtgca aatgcagtgg gcatcaggaa acaggaaaca caaatggaag aatcagggga 7200 atggtgatga gatcggtttg gggatgccat cattgtagat aaaatcttaa tcgataaaat 7260 acagaacaga tggatgctat taaggctttg gttccactgg gagctcctaa aaggtgctac 7320 taaattttag tctcttttaa caactccagg cttctaaaag ttattagaga ggactaaagc 7380 acttttatag tcccataaag agctctaaat ttgatccgtg agtaaaccaa agaaatacaa 7440 gagtcgtacc actctaccac tctagggagt acatgcacca gcatcctgga tatccaactt 7500 gcagagtagg atacctgtga aacctgtaca aaccagttag ccaataagaa atcactgaac 7560 ggaaaggaaa cattcgtaat aaggcaacat ttggtatgga caggttaaac atgacatctg 7620 ctgaacatgt tactttatag caacctgcac agagctattt tctaaaaatt ttgaggcaat 7680 cttcatgtga accgcaatct ttttaaggca aaaggacatc gaggtgtagg ccttgtttag 7740 ttcccaaaaa ttttgaaaat tttttcagat ggagtattaa atatagataa aaaaaactaa 7800 ttgcacagtt taatagaaat ggacgagacg aatcttcgca actccagcag gtcccctact 7860 caagccccaa aagctaaata taggtgtcta ggctaaaaac attattccag caggccctcc 7920 agaccccata ttcggctggg cacccatatt ttccctcaga ccccattctt gttggcccaa 7980 gcccccatcc tccatcgcgt gtcctagccc ctacatcctc catcgcggtc ctagccccta 8040 ccgtaaccgg attgatgctc taattgtgtt cctatccaaa gaagagaaag aaaaaaaaag 8100 acaatgacga gtgggtccct tatgtcattc tctctggaat aggtttggag gcccaaattt 8160 gggtgctaat gttggagttg aagcaaaaaa aagttgagcc ccaaaaagta gggagagcac 8220 ccaaattaaa agtaggggtc tagttttaag ggctactggt ggagttggtg gagttgctct 8280 tagtccataa ttggacaata tttgtcaaat acaaacgaaa gtgctactat tcctattttg 8340 caaaattttt tggaggtaaa caaggttaac taaaaatctt ttgcctttct gtagtgagca 8400 cacggcattt tttagtcatc atcattattt agtttttgca tcaggtatat ggtccataat 8460 tggacaatat ttatcgaata caaacgaaag tgctactatt cctattttgc aaaaatattt 8520 tggaataaac aagttaacta aaaagctttt gcctttctgt agtgagcaca cggcattttt 8580 gactcatcat cattatttag tttttgcatc aggtatgagc aagcaaaatt acatgtgcac 8640 aaattggaag cctctgtgat aaggcaggta tccattctaa gctgctgcat tgcctattta 8700 ttttgcagga tcgaaatgta accagaaaat atttcatcat caaacaatga tgtgtcaatg 8760 catcactact aaatacatac accgcagttt ggatgagtat tattattcag taggagcaca 8820 atattgtttt tgcttccttc agtgtgaaac cgcagtaaag catacatgat attccacggt 8880 tcatataccc atttaggaga tgataacttt catacatagt aacatagtac taggaagtaa 8940 ataaaatggt gtgtaccttt tacgcttcta gcttgaattg taaatcttct aaaacttatt 9000 attgactggg aatatgacgt gctcccttca gtatcaatct gcagcaaagc atacatgttt 9060 tgatgtcgat tactataaaa actgtagatg aagatcattc aggggacaat gctaaaaaga 9120 gcggacagaa tacctgggac acccatagca ctatgaaaat cactgactat aatctggaat 9180 caggctgctg caactcatac atggtttgat gtcgattact atagcaaatt gaagaagaaa 9240 aaatagtgat tgatgaatca tgtaaaacca tgccatagtt cactggaaaa ataaatgact 9300 gttggagtac cccaaatctt gggtaaaaga gaagagaaat attgccttta ttatttcaac 9360 cagctgacca agaccacttc cacaaaggaa cctttttgct ctgaaaatct agcagaaaac 9420 aacaaaattc agtgctgaag caaatttgag ggtcactgaa tcacaatgcg aaaaaaggct 9480 gttgcttccc aaattagaac ctgatttttc tttagcccca aattaggaat ggtgaagata 9540 gtaatatttc ttgtcgaagt taagcaaagc aataggaaga tctcaaacat taatcgagac 9600 atctcacctt atcatacaca ggggccagag gttgtgtagt gctcatcccc tcattaatcc 9660 tcaatcaatg aagaatagca ataaccattt aacctgcaaa tgtagcaagt ttattttgac 9720 aaaacaatca ttaatcctca atcaatgaac aacaacaatg cgtactaaac ctgcatatgt 9780 cgtgattttt tttttgtcaa aaattaacca tagcattagg cagatctgag acttggacca 9840 atatcttttg ttctatatct agtataaagt gcatagcaat atattataat tacatgagaa 9900 aggtaactgt agtgagttca tagtgaaatg gagttggaag ccgcatgtta gtagttggac 9960 ttctaaataa aaaaaatgtg tcactgacaa agccgttgtt tacagcacag atggaagccc 10020 catatacagg cctaacacct atttaattca atcatggtaa gaaatcgtac attgtacaat 10080 aaaggcaaga tccgaggcca aaaattaaac agttcccact gtattgcagg catctttacc 10140 acgggcaata agattataat ttggaaaagc aacatggaca agcatcatat attcatatac 10200 ataccaaaat gcttcatcta tgtcaggatg gactgctact agagcacata tccaaacatg 10260 aagtttcttt gaatgtatta tcctacctca gtttaggaaa ggaaataaaa ctatcatgat 10320 caatctaaat tattttgtaa acgaactatt ataattatct ataaaaatat gtgtacacta 10380 aaatatgcat tgaaaagcta atttgttcag ctcatcgagg agtaaaacat gataagcttt 10440 ttttgaaatc ttgctccttt tctattggtt aggcaataaa caatatttat ccaatgcacc 10500 atgttgcaag aatttcatct tctaaaaaaa cctggcacag catgatccct gaggagtgtg 10560 ataagaaacg atttcatctc aggattgcat gtagctcaat ttcaagttct taaatttaca 10620 gcatgtaaaa caaatggtgc acacttttag cccaggcata atttgcaagc aaaagtattc 10680 actattcagt aacatatata tttgttcaac tgaaatttga aggctggcct atttttgtta 10740 acatccaaaa tcactttgtg actaagttcc acggccatga ctgcgttcag cagccatatt 10800 tggctaaata aagcatgtgc ctggcatcac gatcctaaaa agaattgaga cagattaata 10860 caagaaaaaa gggagcggac ctgatggaga tgctcgccgc cagagccccc acgcggggag 10920 gggaggggct ccgcccgcgc cgcctctgct cagggggcaa ggtcgcccca acgacgtcgc 10980 gccggccccg taccgccgtt gcagattgag ggggcgttcg tctgtccacg ccggagcccc 11040 gccgcgccag aggtgcctcc cttcccgaga tcggccgtgc cagggtcgct ggcgccgggg 11100 acgaggccgt ggggaaggac aagagaggga gaagccaaac cctagcccgc tgcgccgtgc 11160 cctgggatgc cgtcgtactc caccatgagc cggcggcacg gatctggtcg acacggcgag 11220 acgcgacgcg agtggagagg aggaggccgg ccgtcgctgc tgcgtcgccc gcgccgccct 11280 ggtggggatc gagaacgtga gggagagacc accggatgat ggggatgagg ggatgagaaa 11340 tttggggaaa aatctagaac gagaggcact gtggagcttc ttatagggac ttttttttat 11400 atgacttaga gcatctccaa taacttgtat ttcaacttgc taccctacaa aatttgctaa 11460 aacataaaaa tcctcctcca acaactcctt atctcaactt gctaaatttc ccaagttgtt 11520 atctagaggt ttctactgcc gagatttgtc aagccaagtt gctatcccga gcgcaacttg 11580 ttggagacac atattctttt accaaatgag cggtcccatc tgtcatcctc tatttttacc 11640 aagtgagaat agcataaacc cttaaaaatc atgtttcacc atttgtctta ttcaaaaatt 11700 ttatgtaaat tataaaataa ataaatcatt agtactatcg ctaatgataa aatagatctt 11760 aacaaaatat ataatattta tgtaaaaatt ttaaataaaa cggattatta gacaagatgt 11820 ctgaaatttt aaaacaacac tttttttgga cagataaagt atgtatcaaa caataactaa 11880 tgtagtattt atttgatatt ttttattaaa tcgtaatcgt cacatcatct tgcccctaca 11940 tctaagatgg tgtctgagtc ttcgtccttg ccgaatttgg gcaccgtgtt ccttttttaa 12000 agcatgtgta gtatgtaatt ttttttgtta aatatgtgtt atatcaatat ccaaaaattt 12060 aaccaaccaa aatatttatc tttaattgtg aaaatttctc ttcgccttta atttctgtct 12120 gcgccttttc attgcgctga ttgtaaagaa aattatagtc tgtgaacatt ggggacgaag 12180 aaggaactct aatggaacaa gagaggaact atgacgatcc gcatggaaaa gacaaaattt 12240 ccgcctaggt gccatggacc aaaccaatac cataaataat atataattaa ttgtcttgga 12300 ctctgtgatg agtcttgcat tgtgagtgta aatgattttc tttgtgagta tggagagggt 12360 atatatacac aagcatttag tatgcagccg ctcatgacac tgtagctagg gtctaacgga 12420 ggtggcatgg tggggcagta gacatttatg cattattggt gacaagatgg aacagtgcta 12480 cttgctccct tcgggagctc atgatatttt gttaaaccaa acatgttaaa gtcgtcaaaa 12540 tatattaaca actaaaatct ttatttattc aaaacaacaa tttttccaaa gcaacccaga 12600 cgcgcgtaag gcgtacatat atttaataat ttgacaaaag ttagtgtgtt ttattttaat 12660 gaaacatcaa aactggtaat taactttggc atctgaaaaa aatagctatc ctctaaaaag 12720 atgaaaaaaa tagcaacatg gaaagcatgc agacagtagt aaaatttgga tactatagca 12780 ttttattttt atttaagaaa tattatccaa tcatagacta actaggctca aaagattcat 12840 ctcgttattt acaggtaaac tgtgtaatta gtttatattt ttatctatat gtgcttcatg 12900 catgtgccgc aaggttcaga ctgcattttc taataaacag aacctagaat agaatatgaa 12960 aagaacctaa aatagaaata gttattaatt aactgaaact ggtttttgtt tttggttgat 13020 aatatcttgg cacttgttct ttttgctttt tttttctatg ccatgtttgc agcgaaacaa 13080 ttgtgcaaat aggacgtcac catgttgatg caactttgtc tggagactct tttcgtcgga 13140 ggcacagagt aggacatttg ttatgaatgt tttttgtgaa gcactcaata ccgactacaa 13200 agcaaaccca gatttgaagc catccaaatg tttcttaaca agtgatgttg tggtaatatg 13260 attacaataa ctaatcttat ttttatcata ttcaacttgt acatgtattt ttttaattca 13320 caatttttac tgcacctttc cttcttacac atccttttct atttacatgg caggacaaac 13380 tttgtacaca gacatttgaa gtttcagcat ataattcata tctctccagt cgggtgattg 13440 gtttttccat taacaaattc aacatggtta gcatggatca tgtttctagt tttttattct 13500 tacccatcat agtcccagtt caacacattt tttaaatcaa ttgccccagg tcatgatccc 13560 ccggtgtgca aatttgaaca ttggtggttg atagtagcta acattaggga ccaatcgatt 13620 tgatatcctt aactctttgg aaatggatgg taccacctca aagatgacga acgagatagt 13680 gagaaaacct ttttttcaca cattcatttg gtttatttca aacataagtt tcatatcatt 13740 tatgtctttt ttcaactatt caaagtactc ttgtttatag tctttttatt ttatccactt 13800 ttgtcagtgt gacaacttca gaaagctata ccgacacaat tttgggaagg tgtttgacaa 13860 gttgagtctc ccaattcaag tacaaccagc accgcaacag aaaactgggt attttccata 13920 catctgcctt cttcttttgc ttcctttttc tttgataagt tctggaacta gtagtgcaaa 13980 gtttcaaaat attttacaag acagcacatt tttttatttg taaagtcatg actgaaagtt 14040 aataattttt ttattgtaaa gttctcaatc aagcagaatt ttttttatat tgtcatagtt 14100 caaagtatta cacctgcaat tatatatcat aatttgataa tttctgagag taaaatattg 14160 aacctagtaa aaattctgta atatcataat tttaaagttc ttttttactc attttacaag 14220 tgcaaattta taaacctagc tgtacacagt ttatagtatc atagttcaaa ttttttccac 14280 cattacaaag ttttgcaata tgattaacac tgtagtacaa aagtttctca tctcttatta 14340 aaagatattt tatttttctg agtatgaatt gttaaagcta tatgtaccaa gttttctcat 14400 ctcttgttaa aatatttttt atttttctga gtatgaattg ttaaagtacc aagttttata 14460 gggttacagt tctaattttt aatctagcct tttttttaca aaagccccta atactttggt 14520 tgtaaagttt tcaacgtagg agtataaagt ttacaatgtc gtatttcaaa gtttgctgtc 14580 taggattata aattttatac tgtaacatcc cataaacttt ataaatgtta aaaactttga 14640 accaccttat aaacttatac tacttgcttc aaagctttag gattttaaaa ctctacacct 14700 aatttcataa attttatttt atctcatttt aaactttcta ctaagatgct atggacttta 14760 tatatatatc taaattaaca ttttataata gcaaacttta cactccaagt tttgaaactt 14820 tgtattctga tattggaaac ttttataatt ttacatgcaa aactttatca tctatattta 14880 atttcaaaaa ctctttaata gcgcattttt gaaacttttt tactgatagg ctactagttt 14940 gtgtcaactt tttttttaac ttcccatcca aagattctaa tgtcatagtg tttatatttc 15000 caaatgtaat ctattttatc ttttttttcc aaaaaaacag ctttgactgt ggtatctatg 15060 tgatgaagtt tatggagctt tgggatggca ggaaattgca tttgcatgac ttatccatgg 15120 tttgtacttt ttttttttgc ttttacacat ttatgtttat tctttctaat tttttaccca 15180 tttcttatgg gcaacacagc tgacaagtgc atatcttttt tttttcaaaa ataaacaata 15240 tgctacctct gtgctcgatt gtgaaggagg ataccaacac atatcgtcag aagattgcaa 15300 attacattct gagacaccca aagaatttaa aaacaactgc tgctgtgaag aagtttataa 15360 gttcagacac ataaatctcc tcaggtacat aacatattat ggacaaactc attatgcctg 15420 tttttctttc agtcattata attcacccac tacttccttg ttgcctaatc caattcatcc 15480 acttaataca gccatctaga caaaaatgca gtatacatat atgactgata ttatgtttta 15540 ctgttcaggt ttaaaaatgc aaactgcaag gtgttcaact caacgatttc aagaaggaaa 15600 tggagatttc ctaagttcca gcaactcaac ctcactctct cttatctata tatatataca 15660 cactctcagt cagcttgtaa cagatttttc ttagaaaatg ttagtgggga aaaatatcaa 15720 aatggtggat gtctgggtag aactcaaaat aacaataata tgcgtttttt ttaatctatg 15780 atgttccaaa tactttttgg ctcattcaaa aataaatgtt caataaaaac tatgatgttc 15840 caaatacatt ttggctcaat gaatttgtaa aatgttttgt gctcaagtga ggccagattt 15900 tttcaaagat ctaatatcgt ggttgccctt tttttttaaa aaaaaacaca tcacgctcat 15960 tatcctagca ttaagtctga ggcccacaat acagtgtctt ctttttctcc ctcaccgttt 16020 aatttttccc cacctctcaa tttctcacca tatatataaa aaagcccgaa ctgtccctaa 16080 aaaaagccca gactgttatc gtctacctaa tcggcctccc ggctttgtta aaaaaaaatc 16140 ggcctcccca ccgtgatcag tgtggggcga cgcggagttt ggcaaaaact gtttggcaaa 16200 tctaagtaaa aaggatggca agtcaagtca aatatttgat gattgccaaa acttaacaaa 16260 acctcttgtg cgcaaagttt cttgtatacg gtgaaaagtt tattgtttat caatggaaag 16320 tttcctgcgc taatagaaag ttttatactg gtgaaatgga aagtttcctg cgctctttct 16380 tgtctgcgct aatagaaagt tttataccgg tgaaacgttt attgtttacc aatagaaagt 16440 ttctgtgcac cagtgcaaag tttccttcaa acaatgtcgg ccggtctgtg ccaggaacaa 16500 cgaggggacg acgggcagaa gtttcacttg ccgcccggga aagggaaaga agaagaggga 16560 tcacgcgttg gcaagcgagt ccggcagccg ctcataaatt tgccaagcgt gttaatttgc 16620 tttgccaaac acggttggag atgcattttt gctcattttg ccattttttt ttgccaacga 16680 gatgctctaa ctccacagtg ctcccgcgct cggcactcaa aaaaaaactc gtccttttgt 16740 cacaaacaga gagttctaga aaccgggtgc ccccacctcc cacaacccgg cccggctcgg 16800 cgctcccctt accagccgcc gcctccgctg ccacccccgc ccatcgcgcg accgtccgtc 16860 gtctctcaac ggatccggcg aggacgcgtc tcctccggcc gcttggacgt acggggagct 16920 cgcggagtct ccactcccgg ctagcttcgc ggctcctccc ctctggatag gagaacttca 16980 catctccgcg aagcggcgag ccccggcctc tccacgcctg ccccggcctg cgacctcgcg 17040 aacagccatc cgcgcgcccg cttctgaagc tcgccgtcgc cctccacgaa ccgacatccc 17100 gcccacgccg cccacttctt ggattctcac actcgccctc ttgtggaacc gctgtccgcc 17160 ctcgcccgca gcagtacacg agcatcaggg acgaggaaac tgccttgttc tttgcctgct 17220 ccgacatcgc cgttgtcgcc acgacgcaga acaccgagcg gctccaaagt acgcagcatc 17280 ggcatctccc tgttttacca agtagtacca ctgtttttac aactaagtta ctcaatttgc 17340 tcgctatttg cagcaatcta cggcaacgaa caaaaggcgg tggttattgg tgttagtggt 17400 ggctgttgcc tacgcacaga gagccctttc tgaatggtat gcttttgctt tgtgatatac 17460 gtgactagct aggtactctt acatgaccga tcgagttgta tcatggtccc taaaaacctt 17520 actaaaattt attttgtagg attttgataa cgggcgcgca ccatcatctg ccgacgtaga 17580 atctaattac aatgcatcag atgagggagg gagtagtgat gcttaatgca gagggccaat 17640 atggacatga tactgcaggg agcaagagag tgaggtgcag gcatctcaac ctccaggttg 17700 ccgccggaga aacaggaaac cggcacagtg gccaaccgac aagatagtcg tcagagagat 17760 cacagagaat gggatgccca ctgagctgag ggccgagagg aggatgaaga ggcttgctgg 17820 tttgattgct agacaaaggt tgcccttgac cttgctttca tttgatgccc taactgaaac 17880 acaaagggag aaattatttc aggattatgt ccaaccttgg ttggagtttg aagaaccatt 17940 gcaggctaag gcgagtaaca tgctgatgag gatggtaaac aaatcttgga gaacccacaa 18000 aagcgaccta gtacgcaatt ttgtcaatac agggttggat cccttgaaga agcacccata 18060 cattcagctt gaagattggg aaacatttgt gagcctacag gagaccgatg aagcaaaaga 18120 aagaagtgag ttttacaaga agcttcgggc gaagaacaag aatgaccact gcctggggac 18180 aggaggatat gctacagcac ttcgaaagtg gaggaaagag gatttggaat tagccgccaa 18240 aggcctcagt aatccttggc acaaatgtcc tgagggtcgc cctaggaatt atctgcgtgc 18300 acatggtaag ttggttatga cgcctgaagg tttccctaag attcaatggt tgtctaagtc 18360 agctgaagcg gtctctcagc aagttgtaga gaaacaagca gaacttgagt ctttagggct 18420 cacaaacaag ttggtcaggg ataaagatgt gctctcacag gtcttgggca aagaacagac 18480 agggcgcatg cgcggtgttt ctagttattt tggttggaag ttttggctga attacgagga 18540 catgtatagg aagagaagcg ttcagatgtg gatacggatg ccattaaaga agaaattcgc 18600 ggggaggtac ttagagatgt cattgccatg ctacgtgcac aaggagttaa tttgcctgac 18660 ctgccctcca acactaattt gcctgacctg ccctccaaca ctaatttgcc tgacctgccc 18720 tccaacacta atttgcctga cctgccctcc aacacccttc cctctatggg tgctaaggac 18780 aacagctttg cctcaggcgc tgatgcggtc tgcaacaatg tacagttgga cggacctggt 18840 ggaaatggca attcatatcc aaatcctgtg gatcttctca cagagccaac atattgtaca 18900 cttgtaagca actctggagg ttatccggtg gaggtagcaa agggtcaagt attcccaaac 18960 cgaactgtgt tacattcagt tcctatacag gatggatatg ttgttgtatt agttgatttt 19020 gtacatccgg gccatgagag ctttgtgttg actccgccac caaatgatga gataacaact 19080 cttggagaag ctttgttcac ctggatccag tggagtaaga gtggcattgt gatatcaccg 19140 aaggaggccc ctagtaaaag ctctttagaa cctacatggc ctgggaggtc agccaaagtc 19200 actctaaagg acttggcatg caaagtttca tcctcacacg acgagaaata tgagagtgcc 19260 cctattgtag gaaaatgtgc ttccaaggag cttgcagaag gaaagaaaaa aactaacaat 19320 tccacacatg gtccagctgt atctgtcgca tcctctagag cacacaagag taaaaatacc 19380 aaacgggacc agcaggtggg tggcaagcag cagcagcagg cggaaccgac caaatcgtct 19440 aggagtacgc ctgaggattc cttattgata cgtcccaact ccaagttcaa ttttggacag 19500 ccaatgctat cagaagaaga aattttgcag gcaggtccta agtgtgctga acttcatatc 19560 tactacatga atgcatgtgc aatggggaga aacatcggta taataggtag ggtgaagagc 19620 cattttttct tgcttgacgg ccaatatgtg cctctcactg tgggatttga agatgtgttt 19680 gacctcctca cgttcgattc attggatgta gcaattcttc gcgtgataac attgtgcgta 19740 caatttcttc tcttttagac atgttcattt ttgtagctag gaatgctctt catgtgttag 19800 cattgcttgc taaattgatt ttctatgctt ctttattcct agatacctca ttgcggtagc 19860 tacaaagaaa tctctgccag ttgcgcttct tgatccagag ccattgagaa ttgataccct 19920 gagaagtaat agggattaca gtgtggcgta tctggaaaga tgcctaatgg aatataacca 19980 aaaaaaatat gtggggtttg catataactc tggtaatcac tggattgctg tcgtcatcgt 20040 tcctagctgg cacaaggtgt tgtaccttga ctccaataga ggcgggaaga caaatttgag 20100 tccgttggtc tctgtgatag atgagtgagt actttctaac ctattattgc ccctttctta 20160 taaatatgtt attgagtcca actaatgttg taacaactct tgtatgtgaa gggcctatgc 20220 caactatcag gccaagacaa ggaagacaga attcaagttg actcatgtcc ccaaatttcc 20280 agttagtagt gcttcacttc tagttgttaa ttagtgtttt atttatatta gtaaccatgt 20340 ttgatcatat gatcgcagtg cctacaacaa ggtatggaca acacttgtgg gttctatgcg 20400 gcccaccact tgctgtgtat gctgtcgttt acaaaggcgg ttgactctaa ggtacgcgag 20460 atctatttac ttattagttg ttgtgattag ttgaatgtga tgcttctcta atggttgaaa 20520 ccccaaggtt cagcatcttg tcttgtgagt cgaatatatg acaccattgt gcgacctctc 20580 aaatcatggc gtccaacctt ggcttaatgg catcgttatc accatcaagg gactgcactt 20640 gccacttgca gtgtctccat tatgcaacat gcatccgtca gtggaattta gcagtggcca 20700 gtgttatact acccggcgac catgcatcta ttatgcgttg cgccttgcgc caccacctag 20760 gagtgtatga ttgattgata ataacttata cagaatattc cctcaaccat tatgcactgc 20820 tcgtgtgctc ttgaatctac cgttttgttt taggataagg gcgctactag atagggcccc 20880 cggctgattt tgattactta atccagcatc caatgcatgt gatgttgaat ttattcggcc 20940 attgagacac gccttcacat ataagttaat gtatttgtcc ttacttcaat ttcttgcacc 21000 tcgtagaaga gtgcatgcat gtgaaatatc actgtagttc ttcagccggt cgtgtgaact 21060 cacatgacac atttgctttg attctgatgc cggcgaaagg tagggtgagg ctccatggag 21120 actgtggtgg caagcccggc cggtggggag ccatggaaga agtgaacaac aagcatcccc 21180 ttttgatttg ttaagcatct ttgcatccac atgattttct tcgacaaagt ctatataatg 21240 tttgaataat aaagtgtcat caaggcaagc atattagtgc cgtctaaata gatgcctaaa 21300 atacatgaca tgtaattttt attattatct tttacaactg aattgtgtgc tagtaaatag 21360 tattcaatga gtcccaaatt catcctttgc ccattgcaat gagagatgtg acctctgttt 21420 tgtcatctcc atacaccttt gtccatcagg tgcttggttt gccatcttct caatagccat 21480 tccagcataa tcatcaacat gcatgtgtag tgcaggtggt tttggaatcc tactttttac 21540 ccaaacaggg tcataaaatg gttcacgttt ctggtgcctt atttcttgat cagcaccact 21600 actatgcttg taaccatttg caccttcatc tgcatgcttt ttttcaaaat ttggattaac 21660 ataaggagga cgcatattgg ctgccttctg gcacacgctg gcacaggctg catatcttgc 21720 ctatcttcgg caatcttcta gcacccattg atgccctgaa gggcttagaa taaggaggaa 21780 ccttgttcaa tgttttacct tctctccatt tatatatctc gtcatagcaa agcagattag 21840 ggcgatgaaa aaagaacgat ctatatagat gtaaacttta aactgtaaca ttataaaatt 21900 tatagtttta gtacaaagct ttaaacttcg attttataaa tgttttgtct ttaggttcaa 21960 aactttacac tctaaaatca aaacataaca aactttgtac tctatgttaa gaatctttaa 22020 acaacattac aagaaatatt actaaggctt caaaacttta cattaaagaa attatcaaac 22080 tttgaaacaa tcacatccaa aaatatatac ctactgctaa tttcaaattt gtcgcttaca 22140 attgttaata gtatttaaac tacttctata cttatagttc tataaacttt aaactatcac 22200 attataaact ttgtagtaat agaattggga acttttaccc taattttaaa acctttatac 22260 gtctatctca ttttaaactt tttagtgaca tgctatgaac tttatacact cttgaactaa 22320 atctttttgt tatattgcat gcttttattt gtaaggaaaa ccttatatct tttggctact 22380 ggtcgtgttt tgcagggcct tgacttgaac acaacggtta tccgcctggg cgagattaga 22440 gagaggatct ccaaattcat tctggagtgg atcatccacc cagatggtcc gtttcatgac 22500 cctgctggtg gcctcatgaa caatagttat attgatgatc acaacaacaa tagttatatt 22560 gatgatctgt gatgctattg taagggtgca tttgtcctag ctagctgctc ctatgcatat 22620 atgcataatt gtgtactgtt aattgtgtaa acaactaaaa atttgaactt tgtgttgaca 22680 tatttgaaaa tttgaactta atttagttga tctgtgttgt gttgatgtat tatgggcgag 22740 tttggattat atgcgaacag tacttttttt ttggtgatta tcagctttgt acagacgtgt 22800 gttattaaca cgcgtcagta ataaatattg tacacagacg ggcgttatat taccacagac 22860 acttgtcagt acagcgtgtc tctaacaaat tccaattaca gacgcttaca tgcacgtctg 22920 taataaatcc ttattacaga cgtagtattg cagacgctcc ttggagcgtc tgtgaaatac 22980 ctgaacacac gtctgtaata agcttttttc acatagtg 23018 // ID WHAM3_TM_I repbase; DNA; GRAS; 6783 BP. XX AC AF459639; XX DT 16-OCT-2002 (Rel. 4.3, Created) DT 16-OCT-2002 (Rel. 4.3, Last updated, Version 1) XX DE Triticum monococcum gypsy-type retrotransposon, WHAM3_TM_I, DE internal region. XX KW LTR retrotransposon; GYPSY superfamily; internal region; TREP265; KW WHAM_116F2-1; WHAM3_TM_I. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RP 1-6783 RA SanMiguel P., Ramakrishna W., Bennetzen L.J., Busso C. RA and Dubcovsky J.; RT "Transposable elements, genes and recombination in a 215-kb RT contig from wheat chromosome 5A."; RL Unpublished. XX RN [2] RP 1-6783 RA Dubcovsky J.; RT "Direct Submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AF459639; Positions 62559 69341. XX CC Internal region of gypsy-type WHAM3 retrotransposon. XX SQ Sequence 6783 BP; 2220 A; 1326 C; 1290 G; 1947 T; 0 other; agcttaaacc cttgcttgtc cttaagcaat tcagttgaca aactgaaaga aagaaaaact 60 tttacaaact ctgtttgctc ttgttgttgt aactatgtca aaccaggatt caagttttca 120 acatagatca taactaacca catttgcaat aattctcagg tctcataatt actcatatca 180 atagcataat caactagcaa gtcataataa taaatcttgg atgacaacac tttctcaaaa 240 caatcataat atgatataac aagatggtat ctcgctagcc ctttctgaga ccacaaaaca 300 taaatgcaga gcacctttaa agatcaagga ctgactagac attgtaattc atggtaaaag 360 agatccaatc atagtcacac ccagtataaa ttaatagtga tgaatgcaaa tgacagttgt 420 gctctccagc tagtgctttt taataagagg gtgatgactc aacataaaag taaatggata 480 ggcccttcgc agagggaagc agagatttgt agaggtgcta gagctcggtt ttgaaataga 540 gataaattgc attttgagcg gtatactttc attgtcaaca taacaactaa gagatggtga 600 tatcttccat gctaaacaca ttataggcgg ttcccaaaca gaatggtaaa gtttatactc 660 cccctccacc aacaagcatc aatccatgac ttgctcgaaa caacgagtgt ctccaacata 720 catcaggtcc cagggggagt tttgtttgca attaattttg atttagtttg cataaagcat 780 gggactgggc atcccagtga ccagccattt tctcgtgagt gaggagcgga gtccactcct 840 cttgagaaaa gcccacccaa cacagaagat aaggacaacc ttggttgata catgagctat 900 tcgagcatac aaaatagaat gtttatttga agggttagag tttggcacat acaaatttac 960 ttggaacggc aggtagatac cgcatgtagg aaggtatagt ggactcatct ggaatgactt 1020 tggggtttaa gggattggat gcacaagcag tattcccgct tagtacacgt gaaggctagc 1080 aaaagactag gaagcgacca actagagagc gacaacagcc atgtacatgc attaaaatta 1140 ataaacatta gatgcaagca tgagtaggat ataatccacc atgaacataa atatcgtgaa 1200 ggctatgttg attttgtttc aactacatgc gtgaacatgt gccaagtcaa gtcacttaaa 1260 tcattcaaag gaggatacca ccccatcata ccacatcata atcatctcaa tagcatgttg 1320 gcacacaagg taaatcatta taactcatag ctaatcaagc atggcacaag caacaatgat 1380 ctctaattgt cattgcaaac atgtttattc ataataagct gaatcaagaa cgagggactc 1440 atcatattta caaaaacaaa agaggtcgag ttcataccag cttttctcat ctcagtcagt 1500 ccatcatata tcatcataat tgcctttcac ttgcacgacc gaacgatgtg aataataata 1560 agagtgcaca tgcattggac taagctggaa tctgcgagca ttcaataaac aggagaagac 1620 aaggcaatat gggctccggg ttatatcaac aataatgcat ataagagcca cttcaacaat 1680 ttaattatgg tcttctccta ctgaccccca aagaaaagaa aggaaataaa actatttaca 1740 tgggaaagct cccaacaagc aaaagaagaa caggaaatat ttttggggtt tctttttaat 1800 tattactact acagcagaaa aataaactac tactaatttt ttttggtttt tcttaaggtt 1860 taacaaacac acaagatgaa agcaggaaaa agaaaataaa ctagcatgga tattacagtg 1920 aaagagtatg agcaccgaca tcttgtaatg agtgtgtgtg agcataaatg taatgtcggt 1980 gagaaatacg tactccccca agcttaggct tttggcctaa gttggtctat tgccagggat 2040 agcctggcgg atacccatag gtgtagctgg ggtcgtacta cgacgaagaa tagttgggat 2100 catactgtga tgaagaagaa gactctgact gccactggcc ggcagtcatc tctggatccc 2160 aagaataaac atattgtcgt ggaggctcat cttgtggttc ctgttccagg gctggtgcag 2220 gattcttgta agcttggacg gcaacccagt aacgtggtag ggtcctacaa aattaaacaa 2280 agaaggagca ggcaacgtaa tagtttcagg ataatgttta gcaaagtata acttatattt 2340 gagctctcca ttcctgttct taacaagaaa atcatgagct atcatgctct tatagtctag 2400 ataagcattt ggtaggaatt tttcttcttt ctcataatgc ctaatagcta tgttaaagtg 2460 tgcagcaagg cgagaagcat aaatgcctcc aaagatgggg cctttagtat ggttcagact 2520 caaccgccta gcaatagttc cgcccatact gacagtgttg tcgcggtata aaccatggaa 2580 cagaataata atatcaggaa cactaaggtt cccatagttc ccacgaccaa tcaaacatcg 2640 actagcaaat aaagcaaaat agcgtaacat aggaaaatgt atgctagtga ttcttgcatc 2700 agaaaccttc ctggtttctc ccatagagat aaagttaata aatggttcca actctttacg 2760 aggtggttcc tctaagatac catcaggagg tatgttgcag actgcgcaaa attcagacaa 2820 tggcattttc ttcacaacgt catataaatg aaactctact gaaggaggtg actctttagg 2880 gaaaagtaga agttttgcac aaaagtattt gtgagtaaga gatactatgg acgttggtcg 2940 cggacgaagt cggtgaggcc agcattctta atcaatgaat agaaatcctc ataaattccg 3000 gcctctctta agaaattatc agaaggccat tcacacgacc ggatctccgc ggtacgaggc 3060 aaattatatt tgggcctctg agcttcttca ttttgtttat cctttgagct tcggctcgac 3120 gaacccctca aaagtatact cattattttt ctgaaataat ctgaaatttt tagtaacttc 3180 aaacaaaagt gaaccaactt caataaaact gatagcaact actcctacaa gtgcctagag 3240 cctaaatcaa gcattagaac tacttggaac catataaatt tgacatgcaa gctcaagaac 3300 atggtcacct atgcaacaca aatttgcaaa gaataaagca ctagaacaaa aattaattgg 3360 accaatggag gggtcacata ccaaggaaca atttccccaa gcagttttgc gagaggtgct 3420 ttgagcaagg agatcgaaaa tcacagcaaa agtggctgga actcgtgcct gagttggttt 3480 ttcgggtttg tgtgagacaa aggaagaaga tgggtgctgg gataagtgga ggagggccac 3540 catgggccca cgaggcaggg ggcgcgccct ataggggggc gcccaccacc ctcgtggcca 3600 ggtggcagct cctcccgcgg tagtttttgc acagtaaatc ctcaaatatt cccgaaaaaa 3660 tcatattaaa ttgtcatgtc attctgagga cttctatttt cgggattttt ttatattgca 3720 cggataagtc aggaaacaga cagaaaaata ctattttact ttatttctac taattaacag 3780 aaaatataga gaaggtacag aaggtggtgc ttctagtttc atccatctca tgctcatcaa 3840 aaagaatcca ctaacaaggt tgatcaagtc ttgttaacaa actcattccg ataatcatga 3900 aaccggagaa atttcgaata acactaagtt acctcaacgg ggatatgcac atcccctata 3960 ataagtatat catatttatt tttgacagta ggaagatgaa attcaaaacc tccaattata 4020 atcgatggaa tttttccaat ggagttgata ctatgaactt gaggttgttt cctcggaaag 4080 tgtaccgtat gctcattacc attaacatga aaagtgacat tgcctttgtt gcaatcaata 4140 acagcccctg cagtattaag aaaaggtctt ccaagaataa tagacatact atcatcctcg 4200 ggaatatcaa gtataacaaa gtccgttaaa atagtaatgt ttgcaaccac aacaggcaca 4260 tcctcacaaa tacccacagg tatagcagtt gatttatcag ccatttgcaa agatatttcg 4320 ataggtgtca gcttattcaa gtcaagtcta cgatataaag agagaggcat aacactaaca 4380 ccggctccaa gatcacataa agcagtttta atataacttc ttttaatgga gcaaggatag 4440 taggtactcc aggatctcca agtttctttg gtattccacc cttaaaagta caattagcaa 4500 gcatggtgga aatctcagct tccggtatct ttcttttatt agtaatgata tccttcatat 4560 atttagcata aggatttgtt ttgagtgcat cagttaatcg catacacaaa aagataggcc 4620 taatcatttc agcaaagcgc tcaaaatcct catcatcctt tttcttggat ggtttcggag 4680 gaaaatgcat gggtttctga acccaaggtt ccctttcttt accatgtttc ctagcaagaa 4740 agtctctttt atcataacgt tgattctttg attgtgggtt atcaagatca acatcaggtt 4800 caatttctac atcattatca ttactaggtt gagcatcatc atgaacatca tcattaatat 4860 tttcattagg ttcatgttca ttaccagatt gtgtttcagc atgagacata gagatatcat 4920 ttggattatc aggtggttca gcaataggtt cactagaagt tgcacagttc tatcattttt 4980 cttcttcttc tttttagaag aactaggaac atcaatatta tttctttgag aatcttgctc 5040 gattctctta gggtggcctt caagatacaa aggttcctga gtcattctac cagttctagt 5100 agccactcta ccagcataat catttttctt actattcatt tcatcaagca cttctttttg 5160 agccttaagt acttgttcta cttgagtggt aaccaaagaa gcatgtttgc taacaagttt 5220 aagttcacct ttaatattag ccatataatc acccaagcct ctaatcatat aagcattttc 5280 ttttaattgt ctaccaaaat aagcattgaa gtcgtcttgc ttaaacatga agttatcaaa 5340 ctcatccaag cactgactag caattttagt aggagggact tcagctttat catatctata 5400 gagagaattt acctttacta cctgtgtcgg gatatcgggg tttggaggtt cttcaataaa 5460 taaagaattg agatcataag tttcttcgac aggcgaaaga ttaagaccat gtatttcttc 5520 aataggaggt aaattcttaa catcttcagg tttaatacct ttctctttca tagatttctt 5580 tgcctcttgc gtatcttctg gactgagaaa tagaacacct ctcttcttcg gagttggttt 5640 aggagtagac tcaataattg gagcaggagc tggcttagga ggtgcccaat tattttcagc 5700 ttcatccgat gttctttccc tgaaaagaga accagcacaa ctatccaggt aatctctaga 5760 agcatcggtt agtccattat aaaagatatc aagtatttca ggtttcttaa gaggatgatc 5820 aggcaaagca ttaagtaact tgagaagcct cccccaagct tgtggtagac tctcttcttt 5880 aatttgcacg aagttgtata tttccctcaa agcagcttgt ttcttatgag caggaaaata 5940 tttagcagag aagtaataaa tcatatcctg gggactacgc acacaaccat gatcaagaga 6000 attaaaccat atcttagcat caccctttaa tgagaacgga aatattttga gtatataaaa 6060 gtaacgcgat ctctcatcat tagtgaacaa ggcagctata tcatttaact tagtaaaatg 6120 tgccacaaca gtttcagatt catagccata aaacggatta gattcaacca aggtaattat 6180 atcaggataa acagagaatc cataatcctt gtcaggaaca catataggtg aagtagcaaa 6240 agcaaggtcg ggtttcattt tatctctaag tgattctttg ttccatttaa ctaataacct 6300 cttaagctca tatctatacc tgcaagctaa aatagcggca gaagattcca tatcaaaaag 6360 ataaccctca gggataacag gcatattttc atcatcacta tcatcatcgt attcagattc 6420 aatattttct ttttctctag ccctagcaat ttgttcctca agaaattcac caaggggcac 6480 agtagtatca ggcatagaag cagtttcatc ataagtatca tgcatagcag aagtggcatc 6540 atcaataaca tgcgacatat cggaacgaat agtagaagca ggtttaggtg tcgctagcct 6600 actcataaca gaaggtgaat caagtgcaga gctagatggc agttccttac ctcccctcgt 6660 agttgtggga taaattgttg tcttagcgtc tttcaagttc ttcatagtgt ccaacagata 6720 taaatcccaa gtgactcaaa gaatagagct atgctccccg gcaacggcgc cagaaattag 6780 tct 6783 // ID WHAM2_TM_I repbase; DNA; GRAS; 8848 BP. XX AC AF459639; XX DT 16-OCT-2002 (Rel. 4.3, Created) DT 16-OCT-2002 (Rel. 4.3, Last updated, Version 1) XX DE Triticum monococcum gypsy-type retrotransposon, WHAM2_TM_I, DE internal region. XX KW LTR retrotransposon; GYPSY superfamily; internal region; TREP264; KW WHAM_115G1-2; WHAM2_TM_I. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RP 1-8848 RA SanMiguel P., Ramakrishna W., Bennetzen L.J., Busso C. RA and Dubcovsky J.; RT "Transposable elements, genes and recombination in a 215-kb RT contig from wheat chromosome 5A."; RL Unpublished. XX RN [2] RP 1-8848 RA Dubcovsky J.; RT "Direct Submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AF459639; Positions 141501 150348. XX CC Internal region of gypsy-type WHAM2 retrotransposon. XX SQ Sequence 8848 BP; 2762 A; 1849 C; 1837 G; 2400 T; 0 other; actcccccaa gcttaaacct ttgcttgtcc tcaagcaatt cagttgacaa actgaaagtg 60 ataaagaaaa acttttacaa actctatttg ctcttgttgt tataaatatg caaagccagc 120 attcaagttt tcagcaaaga ttatgaacta accatattca cgataatgca taggtctcat 180 gtttaatcat atcaatggca taataaacta gcgagcaata ataataaatc tcggatggca 240 acactttctc aaaacaatca taatatgata taacaagatg gtatctcgct agccctttct 300 gagactgcaa aacataaatg cagagcacct ttaaagatca aggactgact agacattgta 360 attcatggta aaagagatcc agtcaagtca tactcattgt aaactaacag taatgaatgc 420 aaatgacagc ggtgctctcc aactggtgct ttttaataag aggatgatga ctcaacatga 480 aagtaaatag ataggccctt cgcagaggga agcagggatt tatagaggtg ccagagctcg 540 gttttgaaat agaggtgaat aatattttga gccgtatact ttcattgtca acataacaac 600 caagagatgg cgatatcttc catgttacac acattatagg tggttcccaa acagaatggt 660 aaagtttata ctccctctcc accaacaagc atcaatccat ggcttgctcg aaacaacgag 720 tgcctccaac taacaagagt cccaggggga gtttggtttg caattatttt gatttagttt 780 gcataaagca tgggactggg catcccggtg accagccatt ttctcgtgag tgaggagcgg 840 agtccactcc tcttgagaat aacccgccta acatggaaga tacggacagc cctagttgat 900 acatgagcta ttcgagcata caaaacagga tatttatttg aaggtttaga gtttgacaca 960 tacaaattta cttggaacga taggtaaata ccgtatatag gtaggtacta gcacaaatgc 1020 ctgtgcattg ctacgggttg aactttgtta tttgactctg atgtccttaa ctcccatggc 1080 aactaacgac cagcacctcc tacatggcta caatcggtgt gggtagccaa tgtggctact 1140 accaaccaga cgtccgcaac cgtcatcctg aaaattgaca caaacctgtc aagcttcaac 1200 tttttgttta atctagcaca acaaagttga aaagtgacca attaaattat attattattt 1260 atactaaatc agaatcacta attaatcgtc taatacacac aagggaacca ttcttagcag 1320 tttgcaatcc aggcacgctt tgaacttgga gttcaactcg gtgactgaag tgatacttcc 1380 catgctaaat acagtcacca gctttgtcag aattcttgca cacaacacac tctccaggaa 1440 gaagttttgg acctcccttg aaagccatag aagatcatca ggttaatgtg taactgcaca 1500 catcaatgtt actgatatca tgccagaact tgttgagatt tccagtgtgc tcataagtcc 1560 cgtttgacta cagattggtt aaatcagtaa gaacttcagg ttacctcaaa gaaaaagtac 1620 atagtttggc tccagatgga agcattggca ctatgtaatg tctcgactta tgttggaaaa 1680 acatcaagaa cacgcaaact gagcagcagg ctaccgaatt ctggagccac aaggatgggg 1740 acagagaacc tcgactcaga agtgatggat ccatgtaggc gcagtattct cccccggtgt 1800 tcttcagatg cgtagcacat acgccgattg catgaccacc accgcatgag ctccacagct 1860 tcatcgaact ggagcgtgag cacacgccct ggtccatggc tcctggatct tgacatttgt 1920 tgaatctggc ataacatgag acttccatcc atccaagaaa ctaagccacc acagccgcat 1980 acatcagcca taagatccga ctgaacatta cgcctaaaca agagacaagg acagtccacg 2040 gggagcaaag acggaagcga tgcctaaaca gaacaatttt gcagctctga acattgggtg 2100 gaagtggcaa caactcaaca gtaaaaacac agtcaatcag cacgcatctg tggccgcggc 2160 gctacgtcca tgagagagta agcagcctgc ccaggtagat agaatatgtg gcacgggagc 2220 acatgttggg gcagttgcgg agcacctggg ttgcaaagag gaattgggtc agcgaacgga 2280 gaagctcagc ttctgcacgg aggagcagca ttgccgtcag gtggcaggga atcgaggtag 2340 gcatgaggcc cctcttgcac caagatcgag gtcccaagca tgccgcaacc agattgaggc 2400 acaccatccc gacccccggc tggcccagcc cgagccttgg ccccgcctac gccgagattg 2460 acgcccggag cacgccctga ctagatcgag ggactttata tgtgggaatg gtgtggattc 2520 aacttgataa tcggggagca ggggcggggc atagagcacg gcggccgcgg ccagagcctc 2580 cgcgttcgtg ttgccgtaac actggccgga ttcgacgcac gttgattcta acgctggcct 2640 acatcccgcg tgtcctcctc ctcctcctgg gtgttgcctg tgacggctag gagcatgttg 2700 aacaacccgt cgtggtcggc ggcgtgcgct cgagccggcc gggtgcgggc ccagagcgcg 2760 gcgacccggg cctcgccgtt ggtgaaccgt gcgcggagga ctcggtcggc gcgagaagga 2820 gggcgcaggg gagaggaggc aggtgggggt gcggggagga cggcgcggcg gtggatgcgg 2880 gccggcggtg cggaagcgac ggatccaggt ggggctggga cgcgcatgcg ctctacttgg 2940 gggtgttttt gttgtcaaat gcgtccacgg gtggggcaaa attacgaaaa gttttttcac 3000 ttatttactg gagtgcgggt taattactta ataccatatg gggctttttg aaaaacgtgc 3060 gcggcggtga acccggagac tcaatccgtg ctttattatt agggagagat ggtggactca 3120 tatggaataa ctttggggtt tatggagttg gatgcacaag cagtattccc acttagtaca 3180 ggtgaaggat agcaaaagac tgggaagcga ccagctagag agcgacaaca gtcatgaaca 3240 tgcattaaaa ttactcaaca gcgaatgcaa gcatgagtgg gatataatcc accatgaaca 3300 taaatatcgt gaaggctatg ttgattttgt ttcaactaca tgcgtgaaca tgcgccaagt 3360 caagtcactt aaatcattca gaggaggata ccaccctatc ataccacatc acaaccattt 3420 taatagcatg ttggcacgca aggtaaacca ttataagctc ctagctaatc aagcatgaca 3480 caagaaacta tgatctctag ttgtcatttc aaacatgttt attcataata ggctgaatca 3540 ggaacgatga actaatcata ttgacaaaaa caagagaggt cgagttcata ccagcttttc 3600 tcatctcagt cagtccatca tatatcgtca taattgcctt tcacttgcac gaccggatga 3660 tgtgaataat attaagagtg cacgtgcatt ggactaagct ggaatctgca agcattcaat 3720 aaacaggaga agacaaggcg acatgggctc tttgtcagat caacaataat gcatataaga 3780 gccacttcaa caatttaatc atggtctttt cctattaact cccaaagaaa agaaaagaaa 3840 taaaactatt tacacgggaa agctcccaac aagcaaaaga agaacaggaa atctttttgg 3900 gttttctttt taattactac taaaagcatg gaaagtaaac taattaaaag ctacaactat 3960 tttttcggtt tttcttaaag tttattaaac acacgagaag aaagcataaa aaggaaaata 4020 aactagcatg gatgatacaa tgaaaaagta tgagcaccga cttctagaaa tgagtgtgtg 4080 aacatgaatg taatgtcggt gggaaatacg tactccccca agcttaggct tttggcctaa 4140 gttggtctat ggccacggct ggcctggcgg atatccataa taatagttgg ggtcgtactg 4200 agatgcagcg gctatcgcct cctgagctgc agcatggcga cgagcggcct ccgccctcct 4260 ctcatactca tatgcctcct ctctggtgat aacatatctt ccctttgtct gataatcaaa 4320 gaaggcagga gcagggagag taatacggac agcacggcgt ctgtcaaaga ttaagcgata 4380 ctggagaggt gattcattcc tctcgacaaa ctggtggtga accatagcct cataatccaa 4440 ataagcagga ggcaactcaa tatcatcttc acgtatggct ataccaagaa aattagctat 4500 gctgtttgca taaattccac caaagaaatc tccattaaat ctattaagat gcaacctacg 4560 tcaacaatgg ctcccaaatt ataagattta tctcctaaca tagcactcct aagaatactg 4620 acgtcaggga cacacatgtg acatgcctca tctttaccat taatgcatct acctatgaag 4680 agagcaaaat aatgtatagc aggaaagtga atgctcccta tggtagcttg tgttatatct 4740 ctagattccc ccatagttat actagcaaga aaatctctaa atctagattt gcgaggttcc 4800 ctaacactac cccattgtgg aagtttgcaa gcagtggtaa aatcctctaa gtccatagtg 4860 taagaatttt cataaagatc aaacaggaca gtaggagaat tacgtgaaga tgaaaattca 4920 aacctcctca caaaggaact agtgagatag tgatactggc tgcacttttc ttcctcgaag 4980 ctcacaagat cagcattaca aaaatatgcg ttaaattctg ccttaattct tgcttgatcc 5040 ataaagtttt ccgaaggcca ctcacaagga tgcactggag cgtctcttgg tggttcttca 5100 tcagcatcac gcattgcaag cctgtgtcct tgcttccttg aagaaccacc ttggtacatt 5160 ttcctaagca tatttcttcc tctgaaaaat ttctgaaatt tttagtaact tcaaacaaaa 5220 gtgaaccaag ctcaacaaaa ttgatagcaa caattcctac aagtgcctag agcctatatc 5280 atgcatcaaa actacttgga accatataaa tttgacatgc aagctcaaga acagggtcac 5340 ctaggcagca caaatttgca atgaataaag aactagaaca aaaactaatt ggaccaatgg 5400 aggagtcaca taccaaggaa caatctcccc aagcagtttt gtgagaggtg ctttgagcaa 5460 ggagattgaa aatggcaaca aaatgagctt ggactcaggt ttgagcagga tattcgtgtt 5520 tgtgggagga aggagtgtgt gggtgtagga ataagtggag gagggccacc gtgggcccac 5580 gagacagggg gcgcgctcaa cggggtaggg cgcaccctcc accctcgtgg ccaggtggat 5640 gccccccgcg ttgtgttctt ggtgccaaat attcttaaat attccagaaa aaatcatatt 5700 taaatttcag ggcatttgga gaacttttat tttcgaggta tttttatatt gcatggataa 5760 ttcagataac agatagagaa atactatttt tattttattt aatataaata acataaagta 5820 aaaggagggt acagagagtt gtgccttcta gtttcatcca tctcatgctc atcaaaagga 5880 atccattaac aaggttgatc aagtcttgtc aacaaactca ttccgaataa catggaaccg 5940 gagaaatttc gaataacact acgttacctc aacggggata tgcacatccc caataataag 6000 aatatcatat ttcttcttga cagtaggaag aggaaattta aaacctccaa atataatcga 6060 tggaattttt ccaatagagt tgatactatg aacttgaggt tgtttcctcg gaaagtgtac 6120 cgtattctca ttaccattaa catgaaaagt gacattgcct ttagtgcaat caataacagc 6180 ccctgcagta ttcaaaaagg gtcttccaag aataatagac atactatcgt cctcgggaat 6240 atcaagaata acaaagtccg ttaaaatagt aacctttgca actacaacag gcacatcctc 6300 acaaataccg acaggtatag cagttgattt atcagccatt tgcaaagata tttcagtagg 6360 tgtcaactta ttcaaatcaa gtctacgata taaagagaga ggcataacac taacaccggc 6420 tccaagatca cataaagcag ttttaacata gtttctttta atggagcatg gtatagtggg 6480 tactcctgga tctcctagtt tctttggtat tccaccctta aaagtacaat tagcaagcat 6540 ggtggaaatc tcagcttccg gtatctttct tttattagta atgatatcct tcatatatct 6600 agcataagga tttgttttga gcgcatcagt taatcgcata cgcaaaaaga taggcctaat 6660 catttcagca aagcgctcaa aatcctcatc atcctttttc ttggatggtt tgggaggaaa 6720 tggcatgggt ttctgaaccc atggttctct ttctttacca tgtttcctag caacaaagtc 6780 tttcttatca taacgttgat tctttgattg tgggttatca agatcaacag caggttcaat 6840 ttctatatca ttatcattgc taggttgagc atcatcatga atattatcat taccattatc 6900 actagtttca ggttcattac cagattatgt ttcagcatca gaaatagaaa tatcatttgg 6960 attctcaggt ggttgagcaa taggttcact agaagcatgc aaagtcctat catttttctt 7020 tttcttcctt ttagaaggac taggtgcatc tatattattt ctctgggaac cttgctcaat 7080 tctcttagga tggccttcag gatacacagg ttcctgagtc attctaccag ttctagtagc 7140 cactctaata gcgtaatcat tattattact attcaattca ttgagcaaat cattttgagc 7200 tttaagtact tattctactt gagtggtaac catagaagca tgattactaa taagtttaag 7260 ttcaccttta acattagcca tataatcacc caagtgttca agcatatttg aattgtattt 7320 caattgtcta ccaaaataag cattgaagtc ttcttgctta accataaatt tatcaaactc 7380 atctaagcat gggctagcaa acttagtaaa tgggatttca gctttatcat atctatagag 7440 agaatttacc tttactacct gtgtcgggtt atcaagacca tgagtttctt caataggtaa 7500 tggattaaaa tcatatgttt cttcaacatg cggtaaatta agaccatgta tttcttcaat 7560 aggaggtaaa ttcttaacat cttcagcttt aatacctttt tctttcatag atttctttgc 7620 ctcttgcata tcttcaggac tgagaaatag aacacctctc gtcttcggag ttggtttagg 7680 aataggctca ggaagtgccc aaatattttc atttgtcaac atattattca atagaatttc 7740 agcttcatcc ggtgttcttt cccagaaaac agaaccagca caactatcca ggtaaactct 7800 ggaagcatcg gttagtccat tataaaagat atcaagtatt tcatttttct taagaggatg 7860 atcaggcaaa gcattaagta acttgagaag cctcccccaa gcttgtggga gactctcttc 7920 ttcaatttgc acaaaattat atatatccct caaagcagct tgtttcttat gagcaggaaa 7980 atatttagca gggaaataat aaatcatatc ctggggacta cgcacacaac caggattaag 8040 agaattaaac catatcttag catcaccctt taatgagaac gaaaaatatt tgaaggatat 8100 aaaagtaacg agttctctca tcattagtga acagggtggc tatatcattt actttaataa 8160 gatgtgccac aacagtttca gattcatagc catgaaaagg attagattca accaaagtaa 8220 ttatatcaag atcaacagag aattcataat ccttatcagt aacacagata ggtgaagtag 8280 caaaagcagg gtcaggtttc attctagcat taagagattg ctgcttccat ttagctaata 8340 acctcttgag ttcgtatcta tctttgcaag ctaaaatagc tagagcagct tctttttcaa 8400 aaacataacc ctcaggaata acaggtgatg catgttcatt agagggagat tcttcatcat 8460 cactttcatc aatattgtga gattcaatat ttccactctc tctaacccta gtaagttgtt 8520 catcaagaaa ttcaccaagt ggcacagtag tatcaagcat agaattaatt ttatcataag 8580 tatcatgcat agcagaagtg gcatcatcaa taacatgcga catattagaa cgaatagcag 8640 aagcaggttt aggtgtcgca agcttactca aaacagaagg tgaatcaagt gcagagctag 8700 atggtagttc cttacctctc ctcgtagttg agggataaat cttggttttt ggatctctca 8760 agttcttcat aatgataagc agatataaat cccaagtgac tcaaagaata gagctatgct 8820 ccctggcaac ggcgccagaa aatagtct 8848 // ID ERIKA1_TM_LTR repbase; DNA; GRAS; 4269 BP. XX AC AF326781; XX DT 16-OCT-2002 (Rel. 4.3, Created) DT 16-OCT-2002 (Rel. 4.3, Last updated, Version 1) XX DE Triticum monococcum gypsy-type retrotransposon, ERIKA1_TM_LTR, DE long terminal repeat. XX KW target site duplication; Long terminal repeat; retrotransposon; KW GYPSY superfamily; TREP234; ERIKA1_TM_LTR. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RP 1-4269 RA Wicker T., Stein N., Albar L., Feuillet C., Schlagenhauf E. RA and Keller B.; RT "Analysis of a contiguous 211 kb sequence in diploid wheat RT (Triticum monococcum L.) reveals multiple mechanisms of genome RT evolution."; RL Plant J 26(3), 307-316 (2001). XX RN [2] RP 1-4269 RA Wicker T.; RT "Direct Submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AF326781; Positions 104294 108562. XX CC ERIKA1_TM_LTR is a long terminal repeat from ERIKA1 CC retrotransposon. CC 5bp target site duplications. XX SQ Sequence 4269 BP; 1351 A; 1029 C; 1136 G; 753 T; 0 other; tgtaacaccc tcgatgcgac tatatctccc acgtgtcgag gcacgactta gaggcataat 60 cgcattgaag gcatatgtcg caactgaggc aatcttcaca caacccatgt acatataaat 120 ataaaggggg agaataaata ataatagttg gcttacactc gccacgtcac atcaaggtac 180 aaaaatagca tccatcatac aagcactcat ggcccgacta cggcgccaaa atagaaaaga 240 ctccccaaca tgcgactaaa accctgaatc gaaccccgag caggcgccac tactgatcat 300 caggaaaaga aacatagtat cgctgagagt cctcgtcgta ctcccacttc agctcgaacg 360 cgccatccgg aggagtatca tcggtccctg catctggtgt aatagtaatc tgtgagccac 420 aaggactcag caatctcgca ccctcgcgat caaaactatt taagcttaat gggtaaggaa 480 ggggtaatgt gagtggagct gcagcaagcg actagcatgt atggtggcta acttattcgc 540 aaaggagagc gagaagagaa ggcagggcac gagcggaatc taaatagagc agactacgca 600 aacataactc caacgccgtg tccacttccc ggactccgcc gagaagaggc catcacggca 660 acacacgcag ttgattcatt ttagttaatt aaggtcaagt tatctacaac cggacattaa 720 caaattccca tctgcccata accgcgggca cggctttcga aagatcaatc cctgcagggg 780 ggtcccaact tagcccataa caagctctca cggtcaacga aggaatagac ctccacccag 840 gacccaccga tcagactcgg tatcccggta caacaagatg attcgacagg tcaaaactag 900 tccagcaaca ccgcccgaat gcgccgacaa atcccgatag gagcttcaca tatctatttc 960 tcagggcaca ctcagatgag acatcctacg agtaaaacca accctcaagt tgccccgagg 1020 tggccccgca gtctactcgg tcggaccaac actcagagga gcactggccc gtgggggggc 1080 taaaataaag atgaccctcg ggctccggaa acccaaggga aagaaaaggg taggtggcaa 1140 atggtaaaac caaggttggg cattgctgga aaagctttaa tcaaggcgaa ctatcaaggg 1200 gttcccatta tagcccaacc gcgtaaggga cgcaacaatc cgggaacata acatcgatat 1260 gacggaaact agggcggcaa gagtggaaca aaacactagg cgagaggccg agccttccac 1320 cctttaccaa atatatagat gagtaaagat aacatagcaa tataatgata tcccaacaag 1380 taaataaatg ttccaacaag gaacggctcc aatcttcacc tgcaactaac aatgctataa 1440 gaagggctga gcaaagcggt aacatagcca atcaatggtt tgctaggaca aaggtgggtt 1500 agaggctcaa tcatggcaat tgggaggctg acaagcaagt ggtaggcatc gtagcattgg 1560 caaagcaaaa gagcgagcaa actagcatag caaagatagt agtgatttca agggtgtgat 1620 catcttgcct gcacagttgt cagaattgac tggatcctca aaagcaaact caacgggctc 1680 ctcgttagcg aactcgtctc ctggctctac ccaacaacac aaacaagcaa caaggataca 1740 atcaaccacg tgcaagggca agcaataaga tgcaaagatg atatgccatg cgggatgcga 1800 tgcgggatgc aagaatgcaa catgtaacag gaaatgcatg aacctggcct caacttggaa 1860 atccaagtgt gccactggat agaggggaag aaatcccctg aaaacgatat aaagatcatg 1920 gcaatcggag ctacggttta gaaatggcaa gcgatttact aaacgaaccg atctgcgatt 1980 tacagcaaca tgcctcctaa atgcaacaaa atgaacatgc tacagccacc caacatgaaa 2040 acaaattaca tggcagtgat gtactcatca agcttaacaa atcatcatga ctgaggcata 2100 ggcaaattca tcgattaagg gcttcaaaca agcatggcaa aactgaataa gcaaaacaga 2160 tttcagactt agcgaaatta acgctagtct gaaatttcag accacgatgc tctcttcgga 2220 gcagcaaaac aacatgaagg aaaacctgaa catagcaagt aagagcatgg catggagcta 2280 ctcaacaatc ttaacaaaac acccaacatg acctggggcc aaaagggttc acaaaatact 2340 ctaccaagca cacgaacatc gatgaaacac aatcagtttt cagacttagt gaaaactggg 2400 acatgctgaa ataataactc acggaggcat ataaacgagc tcgatgctct cactacggtg 2460 caggtcatgg caaggaaagc atatatccat taagaaggta caaaatgcta gctagacatg 2520 gcaagaacaa tggcatagca tgcatggatc actagcaata actccggcaa aatcgcaaaa 2580 gagttaacga tctgcccaaa acagcaacta tccaaaagtt gagctcgatt gagtcaacct 2640 agagtgctcc aacataacaa gtaaagacat ggatggatta agcacaacaa gcataacaaa 2700 tcactcttac tgatcatcct caaaagaggc acggatcact aggaaacaag ccggacatat 2760 agcatcgtga actaaaacgg ctcagactta gtgaaaatca ctaagtccct gaaatctgta 2820 atctcaggta gccctcttcg caagcttgca caagacaaca cacacatcct aaaaatacat 2880 ggaaggcacc tccggaaaga agacaatatg cttaacaaat catcacaaag gggcacaggc 2940 atatcatgca cggattaaat atggcaaaaa tgacaaaagt gcatgttgga ttaacggatc 3000 tgcaatttga ctcaacatgc ctccttccaa cagcattttg ggcaccaaga tgacctcaaa 3060 tgcaaatgat gcaatggaat gaaatgatgt actcgtcgag acgaagaatt tgacatatca 3120 tacgcccaaa acggagctac gggtgaggag atatgagcgg tcaaagtagc acgaaaaaga 3180 taacgggaga gggaaaagtc aacgggggcg ctagggttta ctgtagcagc gcgcccccga 3240 tccgatcttg cgcactgtag cagcgccgaa gccgagcccg gcgatggcgg cggcggcgga 3300 tcccgctgga tccggcgatg agggcggccg ggggcggcga ggggagcacc gggggagggc 3360 cggcgagctc cggccggacc gggcgaggcc ggcgacgagg tgcggccgga cggcgagggg 3420 agccgcggcc cgcggcgccc ggagttgagg tcgggggccg gcgaggtgcg gctcgcggcg 3480 gccggcggcg gcgcgcggtg gctccggcca cggagcccaa ggaggcggcg gcggggggag 3540 gcgcggggcg cggcccgggt aggcggcggc ggtggccggc ctcgggcctg gcgggccgcg 3600 cgggctgcgg tggcgggagg ccacgtggcg gacggcgatt ggtggcggcg agacgtccgg 3660 cgcggaccgg acacgtccgg cgcgtcggag gggaatttag ggtttcgggg gggggggggg 3720 ggggggtttt tatatatagg cgtagaggga gttaggagag tccaaatgag gtgcggtttt 3780 cgcccacacg atcgtgatcg aacgaccgag atgatgagct gagtttggtg ggttttgggc 3840 caaattggag gggtgttggg ccgcacacac acgaggcctt ttcggtccct cggttaaccg 3900 ttggagtatc aaacgaagtc caaatgaccc gaaacttgac aggcggtcta ccggtagtaa 3960 accaaggccg catggcaagt ctcagcccaa tccggaaatg attaatcccc acacacgaaa 4020 gaaagctaga aatggccacc ggaggagaac gaagcgccgg actgcaaaac ggacaacggg 4080 gaaaatgctc gaatgcatga gacgaacatg tatgcaaatg cgatgcacgt gacgacatga 4140 tatgagatgc acgaaaacaa aaacaacaca cggaggcaaa gacccgaacc cgagaattaa 4200 atataactta atgccggaaa cggcatgagt cggagtacaa ttggggaagg ttacatgtgg 4260 ggcgttaca 4269 // ID TREP37 repbase; DNA; GRAS; 238 BP. XX AC X16096; XX DT 16-OCT-2002 (Rel. 7.09, Created) DT 16-OCT-2002 (Rel. 7.09, Last updated, Version 1) XX DE Hordeum vulgare repeated DNA sequence, TREP37. XX KW Satellite; Simple Repeat; 2 units; Repetitive sequence; TREP37; KW Tandem repeat; type_6. XX OS Hordeum vulgare OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Hordeum. XX RN [1] RA Belostotsky A.D., Milshina V.N. and Ananiev V.E.; RT "Characterization of relic DNA from barley genome."; RL Theor. Appl. Genet. 0:0-00-0 (1989)In press. XX RN [2] RG PlantSat; RT "Direct submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; X16096; Positions 1 238. XX CC source 1. .238 CC /organism="Hordeum vulgare" CC repeat_unit 3. .118 CC /note="repeat unit 1" CC repeat_unit 121. .236 CC /note="repeat unit 2". XX SQ Sequence 238 BP; 44 A; 55 C; 62 G; 77 T; 0 other; cgaaactcac agttttggtc tattttggcc agttttgtat gctattactc attgatattt 60 ggtcccgctg ggatccgaac gttttgggac ccccggggtc cgattacgtg gaactcatga 120 aaactcgcag ttttggccta ttttggccag ttttgtatgc tattactcac tgcttttggt 180 tgccgctaag atccaaacgt ttggggaacc ccggggtccg gttacgggga actcgtcg 238 // ID BARE2_HV_LTR repbase; DNA; GRAS; 1821 BP. XX AC AY013246; XX DT 16-OCT-2002 (Rel. 7.09, Created) DT 16-OCT-2002 (Rel. 7.09, Last updated, Version 1) XX DE Hordeum vulgare copia-type retrotransposon, BARE2_HV_LTR, long DE terminal repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; KW Long terminal repeat; retrotransposon; COPIA superfamily; TREP19; KW BARE-1-P2B; BARE2_HV_LTR. XX OS Hordeum vulgare OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Hordeum. XX RN [1] RA Dubcovsky J., Ramakrishna W., SanMiguel J.P., Busso S.C., Yan L., RA Shiloff A.B. and Bennetzen L.J.; RT "Comparative sequence analysis of colinear barley and rice RT bacterial artificial chromosomes."; RL Plant Physiol 125(3), 1342-1353 (2001). XX RN [2] RA Dubcovsky J.; RT "Direct submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AY013246; Positions 43177 44997. XX CC BARE2_HV_LTR is a long terminal repeat from BARE2 CC retrotransposon. XX SQ Sequence 1821 BP; 481 A; 393 C; 474 G; 473 T; 0 other; tgttggaaat atgccctaga ggcaatgata aatagttatt attatatttc ctgtttaaag 60 ataattgttt attatccatg ctataattgt attgaatgaa aacatagata catgtgtgga 120 tacatagaca caacaatgtc cctagcaagc ctctagttag ctagccagtt gatcaaggat 180 agtcaaggtt ttctggccat gtgcaaagtg ttgttgcttg ataactggat cacatcatca 240 cgagaatcat gtgatggact agacccaaac tatgaacgta gcatattgat cgtgtctttt 300 tattgctata gttttctgcg tgtcaagtat ttgttcctat gaccatgaga tcatataact 360 cattggcacc ggaggaatgc cttgtgtgta tcaaacgtca caacgtaact gagtgactat 420 aaaggtgctc tacaagtatc tccgaaggtg tccgttgaat tagtatggat caagactagg 480 atttgtcact ctgtgtgacg gagaggtatc tcggggccca ctcggtaata caacatcaca 540 cacaagcctt gcaagcaatg tgactaagtg taagtcatgg gatcttgtat tacggaacga 600 gtaaagagac ttgccggaaa cgagattgaa ataggtatgc ggataccgac gatcgaatct 660 cgggcaagta acttaccgaa ggacaaaggg aatgacatac gggattatat gaatccttga 720 cactgaggtt caaccgataa gttattcgga gaatatgtag gatccaatat gggcatcgag 780 gtcccgctat tggatattga ccgacgagta cctcggggca tgtctacata gttctcgaac 840 ccgcggggtc tgcacactta aggttcggtg atgttttagt atagttgagt tatatgtgtg 900 gttaccgaat gttgttcgga gtcccagatg agatcacaga cgtcacgagg gtttccgtaa 960 tggtccggag acaaagattg atttatagga tgacctcatt tgattaccgg aaagttttcg 1020 ggcattaccg ggaatgtacc gagagtgacg aatgggttcc gaatgttcac cgggaggggc 1080 caacccaccc ggggaagccc ataggcccta ggggtggcgc accagccctt ggtgggctgg 1140 tgggacagcc caaaagggcc ctatgcgcca aggatagaaa atcaaagaga aagaaaaaaa 1200 ggaagaggtg ggaaggaagg gaagggctcc accttccaat cctagttgga ctaggattgg 1260 aggtggactc ctccacctcc ttggctggcg cacccttgag gaatttgtcc tcaaggcaag 1320 cctccccctc ccctcctcct atatatagtg gagttttagg gctgatttga gacaactttt 1380 gtcatggcag cccgaccaca aacaccacgg tttttcctct agatcgtatt tctgcggagc 1440 tcgggcagag ccttgcagga gtagatactt caccaccacc ggagcaccgt cacgctgccg 1500 gagaactcat ctacttatcc gtcttgcttg ctggatcaag aaggccgaga tcatcatcga 1560 gttgtacgtg tgctgaacgc ggaggtgccg tccgttcggc actagatcgg agcggatcgc 1620 gggacggttc gtggcacggt ttgcggggcg gatcgaggga cgtgaggacg ttccactaca 1680 tcaaccgcgt ttcttaacgc ttcctgctgt gcgatctata agggtatgta aatccaaata 1740 tcctctcgta gatggacatc accatgatag gtcttcgtgc gcgtaggaat ttttttgttt 1800 cccatgcgac gttccccaac a 1821 // ID TZ86R repbase; DNA; GRAS; 250 BP. XX AC M10174; XX DT 11-NOV-1996 (Rel. 1.1, Created) DT 25-MAR-1997 (Rel. 2.02, Last updated, Version 2) XX DE Maize sucrose synthetase gene mutant (Sh-5586 allele) containing DE transposon Tz86, 5' end of Tz86. XX KW TZ86R; sucrose synthetase; transposon. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-250 RA Dellaporta L.S., Chomet S.P., Mottinger P.J., Wood A.J., Yu M.S. RA and Hicks B.J.; RT "Endogenous transposable elements associated with virus infection RT in maize."; RL Cold Spring Harb. Symp. Quant. Biol 49, 321-328 (1984). XX DR GenBank; M10174; Positions 1 250. XX SQ Sequence 250 BP; 84 A; 74 C; 49 G; 43 T; 0 other; aagcttctag gtacactgga agctctactc cgagaggctg atgtcacagt gggcataaaa 60 cccgagcccg aagctcgaaa cccgaaaaac ccgagcccga acccgtatag cccaataccc 120 gatacccgaa atatttatgc gggcagtaaa ccttaaaacc cgatattatt tcgggcttaa 180 tcgggtagca acaccggtac ccgaaatacc caaatacccg aactgtacaa acatcaccac 240 atagacgaca 250 // ID ZEON1_ZM repbase; DNA; GRAS; 7313 BP. XX AC U11059; XX DT 04-MAR-1998 (Rel. 3.02, Created) DT 06-AUG-2007 (Rel. 3.02, Last updated, Version 2) XX DE Zea mays A188 retrotransposon gag gene, complete cds. XX KW Gypsy; LTR Retrotransposon; Transposable Element; ZEON1_ZM; KW ZMU11059; Zeon-1; gag gene; retrotransposon. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-7313 RA Hu W., Das P.O. and Messing J.; RT "Zeon-1, a member of a new maize retrotransposon family."; RL Mol. Gen. Genet 248(4), 471-480 (1995). XX RN [2] RP 1-7313 RA Messing J.; RT "ZEON1_ZM."; RL Direct Submission to Genbank (21-JUN-1994)Joachim Messing, RL Waksman Institute, Rutgers State University, Hoes Lane, RL Piscataway, NJ 08855, USA. XX DR GenBank; U11059; Positions 1 7313. XX SQ Sequence 7313 BP; 2042 A; 1616 C; 1524 G; 2131 T; 0 other; tgttgggggc ttcggcttcc gaaggtcctc aaaaacgtga tttgacaatg ttttctaagt 60 atgcaagcag gtatcttcgg aattagattg cgggtataca gaagcatggt caggacgaag 120 cttgactgaa atggaaaacg atcataacga aggatgaaac gatcacgaag ctatgtgcag 180 aggagcttca gcatgacagc agaaagggga aaccgactta aagataaaaa gccaaatcag 240 ccctcaaaaa attactatag agttattgat aaaagtaaag ggcattaatg tgcgtctcgt 300 gcctataaat agatgaacag tattcctgta ctgttcacac tgatttggca ttggtatcac 360 gcttgtaccc ttactttcct tcaagccgaa gtacatttgt tgttgtcgtt tatataagca 420 aaataaatga aaatgaatta atgttcaaag taatcatatt attttatgcg tgaatctttt 480 ttactttttt attatgatta tgattatgaa ggtatgacct tcataacctt cgtccgaaat 540 tcattatatc caaagggaaa taatgcttcg aaggacgaag ggttttgata tttaacattt 600 tatgttgcct tgttcttaat tcatagcatt tgagaacaag tccccaacat tggcgcccac 660 ctccggtgaa ctcacttcca tttcttgagc tttgaacacc ttcggcaagc atcaccttcg 720 tcatgccgcc gaaaaaagct tcagcgacag gggctgctac tctgcagcca ttggacccca 780 attaggacgt cctttctctt agggagaccc gaagccagaa gaggaaggct gctagtccaa 840 cgcctccgga agatgacttg gatcaggaga tccaaaacct ggagatcctt cagcaacagg 900 tgcaacgaaa gaaagagaag atggctcgtt tagctgacct tcagagacag atagatgaag 960 cttccgaaga ggttcgtcat cttgttcaag atgaccagaa ccgaaggcct ccgcgcagag 1020 agctccatca ggaaggcttc tacaatgagg acgactggta tgaagatttc catcatggaa 1080 attttgcttt cgatgatgct tctccattat caacagaatt gcaggctaca ccatggcctc 1140 agtcttacaa gccaccccag ctccccatgt acgacggtca tacagacccg aagcaattct 1200 tgatgagcta tgaagcaacc atatcttcgt atggtggcaa tactgcagtc atggcaaagt 1260 cttttgtcat ggccgtcaag agtgtcgctc agacctggta ctcctctctc cggccaggga 1320 caatcacctc ttggcagaag ctgaaggata tgttgataac cagcttccaa gggtttcaga 1380 cgaagccagt tactgctcaa gctttattcc agtgtactca ggaccacgaa gaatacctcc 1440 aggcgtatgt ccgaaggttt ctgcgtctga gggcacaagc gccaacagtg cccaatgaaa 1500 ttgtcattga ggccatgatt aaggggcttc ggtcgggaca ttcagcgcaa tactttgcca 1560 ggaagccacc acaaactttg gagaagctgc ttcagaagat ggacgagtac atccgggccg 1620 acaatgactt tcgccaaaga agggaggagg catttaggtt ctctgaaatg accaggggct 1680 tcggaggaag atttcatacg aggcatgtca ggtcaattca taactccact caaagtgatg 1740 atagagggag ccaacagcaa aggccacaat actctctgca agcttcggga caacagcaaa 1800 gccctgttcg gccgccagcg ccaaggggca ggggcgccag gggcttcggg ggaagatttg 1860 gggatcagcc aagaagaatt tactgtatat tctgtggtga agacaagggc cataccacca 1920 ggatgtgcca cgtcaccatc cagaagcaaa aggagatagc agaagctgca gcttctgttg 1980 cttcggcaag tcaaccccaa gcatcttggc aacagcctcc accgccacca ccaacgcagc 2040 gaggatagca gccagaaggg agtcagcaca ctcaccttca gagggacttc agagaggagt 2100 ccgaagctcg cacagccaat agcacggtgc cagagtcgaa gcacatttac tgacaaatat 2160 cctacctcgg cagcagtttt ttcgcatttt tacattcagt attacttttt gttaataagg 2220 aacaattatg ggaagtctaa gtgtctttta ttgtctttca attccttgta acagtttcgt 2280 ctcttaccat aataaaaata tgtcttctcc ataggcttga gtcgccaaag catacgaatt 2340 tatggtggca tgaagaacct ttgtattatc aaaaatttgt tctaagggac acagtgcaat 2400 ttgttcgaaa cagtaaaaag tcgttcctaa gggagcgcaa tgtaagtttt ctgagcctac 2460 agcgaaaagt cagcgctgat tccgccgaaa gtaaaaggcg aagaagctcc taagggaggc 2520 ttacagcgaa aaataaacgt tgattccgct gaaagtaaaa ggcgaagaag ctcctaaggg 2580 aggcttacag cgaaaaataa acgttgattc cgctgaaagt aaaaggcgaa gaagctccta 2640 agggaggctt acagtgaaaa gtcagcgctg atataaaaga ttttgtgctt tattgcagag 2700 atgtgtgtat ttttggcaca aatatcattt tgcataacat aacatcatca catcattttg 2760 cataacataa gcatcaaaca acatattgca tgtggaacaa gaaggggata cagtatcgat 2820 cttcggagaa tgttttgaaa aagagaaaat cgtgctaagg cacaagataa attaagaaga 2880 agtgtagctt ctttagagag acaacataaa acttttttat agctttggtg aatatttcac 2940 gaagcttgga tattcttcat cagagaagta tggaagttct tgtgatatat aaaagatttt 3000 cttcacgaag catgaaaaga agggaaggtg tttttttgtc gaaggctcaa aaaatggtat 3060 gtatgcaaca tttcatgcat cgtaaagaat taaactataa atagattata tattacattc 3120 aaagttacaa tgtattacac atgttacatt ccaaatattt ttacaatagc atcttatcct 3180 ccttaagaac tatttctgca gcttcgttta gtagctgatc gacaactttg tccatgatgg 3240 cttcggccat ttttctaatt tcatcgtccc ccttcgggtg ggggcccgga gatgcctcag 3300 caggttctga gggaggagaa gatacggcta tattactatt acaaaccgcg aacaaagtct 3360 ggaatcaaaa attacaacag aataaaaacc actagttaat acctatttgc ccttcgggct 3420 ctgtgtcttt ctcagcagcc tctgctatct tcctagcatc atggatgcct ttttcgcttc 3480 tttgaatgat ctcttgagtc atttctcggc cgccattgtc ccaaatgtcg gtgaaaaatt 3540 ttccaccaac caggcttgct tcggtcgagg ggtcctttat gtcttcggta gacaaggcgg 3600 tttcggtttg tgctaaagat ttcacatggt tatagccttt tctttccaac acagtagcaa 3660 tccctctggc gcccgaaaaa gcgcatatgt ctccgcggct attcaagatt tcttcgaagg 3720 cctcagcttc gtgactgatc cattcaatcg ggccttctgg atttcccctt gtgaaattct 3780 cttcgctaga gaatgcgcca acgctggcga agctagattt tatcttctta acacactcta 3840 tggatttatc atagtatttt ttttcttgga agcacgaagc tcttcaacat ttacttccaa 3900 atgatttgcc cattgatcac taagttctcg ttttgtttct tctagtatcg ttcttcttta 3960 gcccttgcca gttgtttctg aagatcctga atttcgcgtt tttgggcttc agcttgagcc 4020 ttagaggtag cttcgtcttc ctttatttta tccactagtg taagcagaat tttatctttt 4080 tccaaagctt cgttcctcag cttgataacc tctgctcgta ggttgttgaa agcaatatta 4140 taactttcat cttcagcatt cttttgcgct ctcaaagcgt tgcttagtat taaaccctat 4200 atgaaaaaga attactataa gaataaaaga atgattcaaa aattgtaaat ttccaaatat 4260 acaattttca caccttcaga ctattatatg caaggctatc tgcaagatcc tccttcgtca 4320 tagcgcatag tccagcttca agcttcagaa accccatact cctagccatc tcccggcaga 4380 cagataattc tttgttgtta gggaggcagt ataagaagtc atcttcgtct gtcccattga 4440 acactagtgc ccccttcgga tattttagtt ctctggcata gtgattagct tcataaatct 4500 cttcttcaga taatttcttc cccgaagcat gtcgcacaat gtaatcgcgt atgttggaag 4560 gtgcttcgag ggcagcagtg tcaatttctt caaccaaaat tggctctgac atttttattt 4620 tttcggcttc caaagctgcc tttgtaactt ttgtttcttc ggtttccaaa ggctgttcct 4680 tggtgggctc tgaaggccca gcttcagctt caagttgttg cttcgaagct tcagcaacaa 4740 aggcttcagt agacacttca gaagtttcaa cggttttctt tggagttatg cttgaagatt 4800 taattgtctc caaaacatct aacacattaa ccatcctttt ttcttttcgg agtcactgtt 4860 ggacccttct ggctttttcc tgtctcaatt tttactgaag aacttaaaac ttctaatgtt 4920 ttttcttctt cagtctttgc ttcttctatc ttttctgttg ctggcacttc ggccaactgt 4980 tcgatttctg gcagcagcgt tgatttttta gcttcggtgg ccgaagaggt ctcaccggcg 5040 aactcaggca ctatggccag tttaatataa cgtggccggt gtgtgagaac ctttaccctt 5100 ttcctcttcg gcgccggctc actaggagcg gctgaagtag tctccttcgc agaggaagta 5160 ttctttcttt ttttgtcccc gcactcgata atggtagtcg gggtagacga acccaattgt 5220 gtcaaatact cggatcagcc tctacttcta tcggcctccg aagctgctga caatgcagta 5280 tcttcggcct ttgaatatac tccaagcagt tcatcactta cagtttcgat gctttttagc 5340 cagtcatcat ctggctcaac gaatttatct ccgaacttaa atgtgtattt cagcctgact 5400 agtccacctt cgtcagtctc tttaatggtc tcctgcggca tttcccattt ttccacaagt 5460 ggccatactc tgaaggcaat gtgttcttgg accaaatccc tcgtcccaat aaaagagcaa 5520 acaacatcga aggctctctg ccattcttcg gctgcttcat tcatttccac cttcggcctc 5580 cgcaggccga agcgttgcca gatgggacgc ataatgatct tctttatatc ttctcgtgat 5640 ttcaagtcat tcttcacgta aaaccattcc gtcatccagt cgccaggcca cctctttcga 5700 aaggtcggca cggggcagct tgacccagac cgggagccga agctgtagca gccaaaattg 5760 ttgtgatact attccttacc ccagggtttt gtttcataca acaattcatg tatgttgcag 5820 aagcttttcg cattaggttc caagccttgg cttctcacgg cccacacgaa gatattcatc 5880 cttatgattg cttcgggggt aagttggtga aggtagattt caaatatctt cagcacctct 5940 acaacaaagc tgcttaaggg aaatcgtagt ccagctttca agaagcttcg gaataccacg 6000 acttcatttt cttcaggagt tggacaagtc ttctctcctt catcagccct cacaacggac 6060 aagtcccaga agtatctgcc cctcatgttg acaagatgat tttctttaat actagatttg 6120 ccaaaaaccg catggcttag tcgccaaggt cgatcttcgg agtcttcacc accactatcc 6180 acatcatagc tgtcactgtc accagtatct tcagataaac cctccaaaat ttctttagta 6240 atcttctctg tattagtctt cgacattgat tgaagaaaac ccagatgcat ctcctcagaa 6300 agacttagct tcgaatcacc aacagctttt ttatcttcag acatccttgc aaacgctgag 6360 aaagtgctct ctaaaccgaa gctttaaaat ctaaaaggcc aagcaagtgt tgttgcgcgc 6420 aggctaaaag ttgggtgagt aaaagcagtt ggcaagatag cgtaccaaat aaactcggga 6480 tgagctctta tttatatgcc cagagcgttg aaactggagg gtcccacttg tcaaagactg 6540 ttgctattct agcaaagaga aggtgttttt tcggaccttc ggcttaaggc cttcgtccat 6600 atcgcaatac gaatttatca ttacagcaaa ttaatattgc gaggggctac tgttgggggc 6660 ttcggcttcc gaaggtcctc aaaaacgtga tttgacaatg ttttctacgt atgtaagcag 6720 gtatcttcgg aatcaggttg caggtataca gaagcatggt caggacgaag cttgactgaa 6780 atggaagacg atcataacga aggatgaaac ggtcacgaag ctatgtgcag aggagcttcg 6840 gcatgacagc agaaagggga aaccgactta aagatgaaaa gccaaatcag ccctcaaaga 6900 attactatag agttattgat aaaagtaaag ggcattaatg taattttata cggactgcgt 6960 cccgtgccta taaatagatg aacagtattc atgtattgtt cacgctgact tggcattggt 7020 atcacgcctg tacccttact ttccttcaag ccgaagtaca tttgttgttg tcgtttatat 7080 aagcaaaata aatgaaaatg aattaatgtt caaagtaatc atattatttt atgtgtgaat 7140 cttctttact ttttcatttg attatgatta tgaaggtatg accttcataa ccttcgtccg 7200 aaatccatta tatccaaagg aaaataatgc ttcgaaggac gaaggatttt gatatttaac 7260 attttatgtt gccttgttct taattcatag catttgagaa caagtcccca aca 7313 // ID FATIMA1_TM_LTR repbase; DNA; GRAS; 481 BP. XX AC AF326781; XX DT 16-OCT-2002 (Rel. 7.09, Created) DT 16-AUG-2004 (Rel. 9.07, Last updated, Version 2) XX DE Triticum monococcum gypsy-type retrotransposon, FATIMA1_TM_LTR, DE long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Long terminal repeat; GYPSY superfamily; retrotransposon; TREP252; KW FATIMA1_TM_LTR. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RA Wicker T., Stein N., Albar L., Feuillet C., Schlagenhauf E. RA and Keller B.; RT "Analysis of a contiguous 211 kb sequence in diploid wheat RT (Triticum monococcum L.) reveals multiple mechanisms of genome RT evolution."; RL Plant J 26(3), 307-316 (2001). XX RN [2] RA Dubcovsky J.; RT "Direct submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AF326781; Positions 145640 146120. XX SQ Sequence 481 BP; 117 A; 127 C; 111 G; 126 T; 0 other; tgaggagtcc aggattaggg ggtgttcggg tagccggact ataccttcag ccggactcca 60 ggactatgaa gatacaagat tgaagacttt gtcccgtgtc cggatgggac tttccttggc 120 gtggaaggca agcctggcga tgcagatatt caagatctcc taccattgta accgactttg 180 tgtaacccta accccctctg gtgtctatat aaaccggagg gttttagtcc gtaggacaac 240 ttcatcatac aacaatcata ccataggcta gcttctaggg tttagactcc ttgatctcgc 300 ggtagatcta ctcttgtact acccatatca tcaatattaa tcaagcagga cgtagggttt 360 tacctccatc aagagggccc gaacctgggt aaaacattgt ttcccttgtc tcctgttacc 420 atccgcctag acgcacagtt cgggaccccc tacccgagat ccgccggttt tgacaccgac 480 a 481 // ID BAGY2_HV_I repbase; DNA; GRAS; 6563 BP. XX AC AJ279072; XX DT 16-OCT-2002 (Rel. 4.3, Created) DT 16-OCT-2002 (Rel. 4.3, Last updated, Version 1) XX DE Hordeum vulgare gypsy-type retrotransposon, BAGY2_HV_I, internal DE region. XX KW LTR retrotransposon; GYPSY superfamily; internal region; TREP206; KW BAGY2_HV_I. XX OS Hordeum vulgare OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Hordeum. XX RN [1] RP 1-6563 RA Vicient M.C., Kalendar R. and Schulman H.A.; RT "Envelope-class retrovirus-like elements are widespread, RT transcribed and spliced, and insertionally polymorphic in RT plants."; RL Genome Res 11(12), 2041-2049 (2001). XX RN [2] RP 1-6563 RA Wicker T.; RT "Direct Submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AJ279072; Positions 13344 19906. XX SQ Sequence 6563 BP; 2000 A; 1392 C; 1270 G; 1901 T; 0 other; actcccccaa gcttaaacct cgcttgtcct caagcgaaaa ccaagatcat aaacatgtcc 60 acatgtttag ggatgaaggt ttcgataaaa cataatacaa acatgagggc atcatgatca 120 cacatagaac aacaatacat cataaagatt cttatgggaa agtaacaatt ccttcacaaa 180 gcaaagtatg aatcaaaaac cttaccgaga agtagccaac aacagtccat agtcattgaa 240 gaaattgcaa tttatcataa catcagaaag aggcaaataa gagcttgtaa agcaaatcca 300 catactcaat cgtctctttt gttttccaca attgttacaa ttcacgtggt actcatggta 360 tcaagtttca gttggacaca gagaaagata ggggcttata attttgcctc ccaaccattt 420 acctcaaggg taaagtcaac aataataaag cacaagtact catctccaag ttgatatatg 480 aatatagatc tttccctagc atatgacgtt caccaagatg aagacgtaat agggaattgg 540 tgttgatcac catgactttc acaaggacaa aagtaaaggt acaagatagt cccttcgtag 600 agggaagcag aggttgtcat gcgcttctaa ggtttggata tacgacctct tagtgtaaag 660 gaacatcact ttatattgcc cctgtgataa agaactttat tatgcagtct gtcgctttta 720 tgtcttcctc atcacaggtt cgtacaagct taagcttatt ttccacgcac taataaatca 780 tacatacttt agataacaac tttttattgc ttgcaccgat gacaacttac ttgaaggatc 840 ttacgcaatc cataggtagg tatggtggac tctcatggca aaactgggtt gaaggttcat 900 ggatgcacaa gttgtatttc tacttagtat ggaagttttg gctaatatga ggtggaagca 960 atcgtcacat gctaagggat ctctagacat ataacattgt ttggaaccaa gcaaacacaa 1020 ttcattatgt tgtcttcctt gtccaacatc tacttctaag catgtaatag tttggtgagt 1080 gctcacaatt atagaaagtg tctaagatga tatatttata tgtgaacctc tctttcctta 1140 ttacttctta ttaattgcaa caatgactgg ggtctatgtt ggtctattct caacaagttt 1200 caatcatcat acttgttata tgtgaagcta tcactttcca taagatcatc tcatgatctt 1260 tcatgctatc gttcttttca tacttttgat cacggcacaa aacaaagccc ttaactaaga 1320 tactctttat tatatagctc gcaagctcga atacatcggg ggagacacaa ggcaaaagac 1380 tcaaactaaa cactaaagac ttatcccact aagagaagaa agtaaaaact gaaaaagaaa 1440 gaactaaaac aaaggtaaaa gaaaaagata taaaggtgat acgataccag ggcgactccc 1500 tcaagcttgg aaaaatccaa ggggattgcc cataccaatg ctcagttgtc ttcctttggt 1560 ggtggcggag gagttgttgc agaggtcttg agcttgtcta atttccactt gagcatgaaa 1620 ttccgctctc tcagataatc attttcctcc tcaagcttca acaccctttg acaaagttcc 1680 tgcttactct cctgcaagaa atgagaaggg ataaacaagt tcttaggctt cctccttgag 1740 tcagggaggc tcgacttctt gaactccaca tgagtgcgtc caggttgagg tagaggagcc 1800 tcctcttcat cggaactcgt ttgttccttc cccttgggat catagtcctc ttactcatca 1860 gtggtccagc catatggttc caagtcccca tagaccttgg ggttagcaag gtattcagcc 1920 acatagctct cccccctgtg aatcttgaga agacatcttg acctagatct gcggcagaaa 1980 ataggctcga aacaaaaaaa ccagaggaaa actgcgcgat acggagatca aaaccctcgg 2040 gcgtatatat aatgattttt ttggacgaga aggagtgctt cgcaagaaaa cggagtccgg 2100 gaggcacacg aggtgcccac aagcactgta gccgcgacca gggggaggcc gcggctacca 2160 agcttgtggc cgcctcgtgc gctctccgga ctgcttttta tttttctatt tttccataaa 2220 ttccaaaacg aagaaaattt cctactggaa aagttttgga gtccaattac ttaccgaaac 2280 acatacctct tcgttttcag agtctgaaac aggccgataa acatccctta cgtactcctc 2340 tcgagttatg atattgatga tattgctctc aacatttatg ggagtaccag agatataatg 2400 cttgattctt tgcccattta ccactctagg aaaattacct tatgtgttat tgaatttgat 2460 ggcatcagaa cgatatactt cctcgacaac gtagggacct tcccatttag agagaagctt 2520 gcctgcgaag aatcttaagc gagaattgta tagcaggaca taatcaccta cattgaactc 2580 acgtttttgt attctttttt cgtgccatct cttaaccttt tccttgaaca acttggcatt 2640 ctcatatgcc tgggccctcc attcatctaa tgagctgata tcaaacaacc gcttctaacc 2700 ggcaagtttg aaatcgaggt tgagctcttt gattgcccaa taagctttgt gttctagctc 2760 aagaggtaaa tgacaggcct taccgtaaac cattttatac ggcgacatgc ccatgggatt 2820 ccagtcctat aagcccatag tgcatcgtca agtttgctag accaattctt tcgagatcta 2880 ttgacagtct tttgtaagat caatttgatc tccctattac tcaactccac ttgaccacta 2940 gactgaggat gataaggaga tgcaactcta tggttgacat catacttagc gagcatattg 3000 cggaaaacac catgaatgaa gtgtgaaccg ccatcagtca tcagatatct agggactcca 3060 aatcttggga aaatgacctc tttaagcatc ttaatagagg tgtggtgatc aacatttcta 3120 gtggggatag attctaccca cttactgacg taatcaacag caactaagat gtgagtatac 3180 ccattggaat tcgggaaggg tcccatataa tcaaagcccc aaacatcaaa tggttcaatg 3240 acaagtgaat agttcatagg catttcctga cgtttactga tgttccctat tctttggcat 3300 tcgtcacaag acaagacaaa cttacgggca tccttgaaga gagtgggcca atagaaacct 3360 gattgcaata ccttatgagc aattctatct ccagcatggt gccctccgta ggctttggaa 3420 tgatacttct gtaggatctg ttcatgttca tgttcaggca cacaacgtct aataacacca 3480 tctactcctt ccttataaag gtgaggatca tcccaaaagt agtgtctcaa atcaaagaag 3540 aattcctcct tttgctggta ggtgaaactg ggtggtatgt atttggctac gatatagttt 3600 gcgtaatcag cataccacgg tgcactatgt gaagtgcgga tgacattcaa ttgctcatcg 3660 ggaaagttgt catcaatagg tcgtgggtca tcaaggatat tctctagcct ggacaagtta 3720 tctgctacag ggttatcagc accctttcgg tcaacaacgt gcaaatcaaa ttcatgtagc 3780 aggagaaccc atctgattag cctaggctta gcattcttct tctccataag gtacttaata 3840 gcagcatgat cagagtgaat aatgactttg gagtcaacta tataagatct gaacttttca 3900 catgcaaaca cgactgctaa aaattccttg tccgtagtgg catagtttct ttgggcactg 3960 tctagagttt tactagcgta gtgaatgaca ttcaacttct tgtcaactct ttgtcctaga 4020 acaacaccaa caacataatc actagcatca cacatgattt caaagggcaa gttccaatca 4080 ggtggttgaa caataggtgc ggttatcaag gccttcttaa gtatttcgaa agcttcctca 4140 caatcctcat aaaaaacaaa aggaacatcc ttctgcaaga gattggtaag aggcctagaa 4200 atcttagaga agtctttaat gaaccttcta tagaaaccag catgacctag gaaacttcgt 4260 atacctctga tatctatggg gcaaggcatt ttttcaattg catcaacctt agccttatca 4320 acttcaatgc ctttctcaga gattttgtgt cctaagacga tgccttcatt aaccatgaag 4380 tggcacttct cccaattcaa gacgaggttg gtatctttgc atctctgtaa gaatcgatca 4440 aggttgctga ggcaatcgtc aaaggaagaa ccgtaaacgg agaaatcatc catgaaaacc 4500 tcaacaatct tttcacaaaa gtcagaggat attgccatca tacatctttg aaaggtggca 4560 ggtgcattgc ataagccaaa aggcataagt ctataagcaa aggtaccgaa ggggcaagtg 4620 aaagtggttt tctcctgatc agattgtgca acaggtattt gcgagaaacc tgaataaccg 4680 tctagaaagc agaagtgtgt gtgtttagat agcctttcta gcatttggtc gataaacgac 4740 aaaggataat ggtctttcct ggttgccttg ttcagtttcc ggaagtctat caccatccta 4800 tagccagtaa taatcctttg tgggattagt tcattcttat cattaggaac gacggtgata 4860 cctctcttct taggtacgca atgtaccgga cttacccaat cactatgagc aacaggataa 4920 atgattcctg cttccagaag ctttaatatt tcttttctca caacctcttt catcctagga 4980 tttaacctcc gttgatgatc agcaactggc ttagaatcag gatcggtttt aatcttgtgt 5040 tgacatagag tgggactaat acccttaaga tcatcaagag tatatccaat agcagcacgg 5100 tgcttcctca aagtttataa taacttattc tcttcgtgat tcgagaggtg agcactaata 5160 ataacaggat atatctcctt ctcatcaaga taggcatact taagtgtatc tggtaactgt 5220 tttagctcga acacgggatc accctttggt gggggaggat ccccaagcag ttcaacaggc 5280 agattattct taagaatagg atattcttct aaaacaattt tatctatctc atctctttca 5340 tccatatgca tatcattttc atgctcaagc agatatttct ctaaaggatc tgtaggagcc 5400 acgacaatag aggcaagagc aatgatttca tccctaccaa atgactcttt ttcatggggt 5460 tgtcttccaa actagaagaa gttaaattca tgagacacac cctcgaaact aacagtgaca 5520 gtctgtttaa cgcaatcaat atgagcattg acagtgttga gaaagggtct accaaatatg 5580 atgggataaa agctatcttg tgcagtagca aggacgagga aatgagtagg atacttcgtc 5640 ttaccacaca agactcctac atctctcaca attcccacag ggcacatagt gtctctatta 5700 gctagcgtaa tagtgacatc aatgggttct aactcagaag gtgcaatctc atctttgatt 5760 tcatcatata gggaccgggg tattgcacta acactagcat ccatatcaca taaaccatga 5820 taacagtgat ctcctatctt gacagaaaca acgggcaggc caactatagg tttgtatttg 5880 tcttttgcgt gaggttcagc aattctagcg gagtccccac agaatttgat aacatgcccg 5940 tctatgtctt cggctaagag atctttgata atagcaacac taggttcaac tctaatttcc 6000 tcagggggtg caagtggtct aatgtaaccc ctacgtatca cagttggagc tttagaataa 6060 tcctttttcc tagcagggta aggtggtttc tcagtgtagg cacaaggaac aataggatca 6120 ttatagacaa tgactttctc ttcaactaga ttgggtttaa ctatgttgac ttatatagta 6180 ggatgatact taaaccactt ctctttggga agatcaatat gagcagcaaa agattcacaa 6240 agagaagcta ctatctcata gtcaagtcca tacttagcgc taaaatctct cgaagtattt 6300 gtttcaacaa aatatttaac gcaatcaaac tggaaattca tacctgactc cttaccttct 6360 tcaagctccc aatcttcaga gttacgtttg attctttcca ataaattcca cttgtggtca 6420 atatccttcc tcataaaaga accggtacaa gaagtgtcaa gcatggtacg atcttcatgg 6480 gaaaggtgag cataaaagtt ttgagtgata atttctctcg agagctcatg attggggcat 6540 gaatatagca ttgatttaac cct 6563 // ID Gypsy22-ZM_LTR repbase; DNA; GRAS; 1537 BP. XX AC . XX DT 24-SEP-2007 (Rel. 12.09, Created) DT 24-SEP-2007 (Rel. 12.09, Last updated, Version 1) XX DE LTR retrotransposon from maize: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy22-ZM_LTR. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-1537 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from maize."; RL Repbase Reports 7(9), 956-956 (2007). XX DR [1] (Consensus) XX SQ Sequence 1537 BP; 479 A; 144 C; 294 G; 612 T; 8 other; tgaaaraata taatttataa ataaaagtaa gtaaattttt tggtattata attakattaa 60 tgrtaartat aagttaataa atagaataaa atttaattag tgaaataaat tgtaatttaa 120 ttaaattatg ttgtgtccca agaaataaat tgaaaataaa atttaagttt tatatgaatt 180 agaaatttat taaattttct aaaataggaa tagattaaat tatctttcat aattaaaaaa 240 tattaatttg aatayttaaa attttaggat trtcaaacyt ataattttag ataaatagta 300 ataattattt ctcttatatt ttgttaggtg aagagtagat tttcaggatt atttttctcc 360 aaagtttttg aggacttctt ttgaggtaag ggaaattaat gcagttattt tttttttaga 420 aacaaatttt tatatacatc atttggaaat gttttgagtt attatttgtt ttatgcatgg 480 atcaaatatg ttttgcatga aaagtatgtt agaaccttat attttgttta taacacagaa 540 atgtggagat attatgtttt gcaaatttga ataattgaaa taagtgtttg actctggttt 600 gtttggccct tgtcaacggg atataatagt tgacttttga ctttttggcc cttgtcaacg 660 ggatataata gttgaccttt acatttcttg gtggggaatg taattgattt ggaccccagc 720 ctctaggggt ttggttagag gttactagta ctagtagtgt ttggttccgt ccaccttaaa 780 ggaacaattt gaggctagcc acccatttga aaagtcccac ctaactgggc accatttgat 840 gtttgatgac cagagtaaat aaataatttg aatgttttga ttgaatttga tatgaaaatg 900 tttgaattag aaatgaaagt gtacagttaa aagttttgaa tgtattggca aaaytaactc 960 aaaggtttat gaaaataatt aattataata tctcctattt tgcaagtgaa attgaaatat 1020 ttgatccatg gattgcatta atgttcctta ttgggctttg agctcattcc catttgttga 1080 taatttttca ggtaccctta gttcgggtga ggagtgatgg ctaggttgag gaatggtcat 1140 cattaggatt tgacttagga ttttatgttt ggattttgtt agcttataag tttatgttca 1200 tttggatcat ttggtatttg gaagctattt ggatattgaa ctttcaaatt tttttatgat 1260 agtttgaagt tgagatttgg agattatgaa aatttgttag cacttgaatt gtttgagttt 1320 gcaatctatt tggataatgg attttggttg atggatgctt agttttaaag ttaagtttga 1380 ggattttaga attttgttcc gctactctaa acaggtattt ggtaattggt tacttccagt 1440 tacaatatga ttgtttgggt caggttacac tttaagcctt cgggtttgag gtgtgaaatg 1500 accgtcacgc ccttggagtg ggtcttgggg cgtgaca 1537 // ID DANIELA_TM_LTR repbase; DNA; GRAS; 935 BP. XX AC AF326781; XX DT 16-OCT-2002 (Rel. 4.3, Created) DT 16-OCT-2002 (Rel. 4.3, Last updated, Version 1) XX DE Triticum monococcum gypsy-type retrotransposon, DANIELA_TM_LTR, DE long terminal repeat. XX KW target site duplication; Long terminal repeat; retrotransposon; KW GYPSY superfamily; TREP231; DANIELA_TM_LTR. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RP 1-935 RA Wicker T., Stein N., Albar L., Feuillet C., Schlagenhauf E. RA and Keller B.; RT "Analysis of a contiguous 211 kb sequence in diploid wheat RT (Triticum monococcum L.) reveals multiple mechanisms of genome RT evolution."; RL Plant J 26(3), 307-316 (2001). XX RN [2] RP 1-935 RA Wicker T.; RT "Direct Submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AF326781; Positions 61943 62877. XX CC DANIELA_TM_LTR is a long terminal repeat from DANIELA CC retrotransposon. CC 5bp target site duplications. XX SQ Sequence 935 BP; 177 A; 269 C; 290 G; 199 T; 0 other; tgtcgggggt gctaatccca cggacaccta tgggaccggc ggaccgagcc ccttttggtt 60 ctgtaggggg cggagagcgc acgaagagca gatcgaggcg aagcgcacga gcacacgatc 120 agcttaccca ggttcgggcc gcacggatgc gtaaaaccct actcctgctt tgatttgtat 180 tgtgttcttg ctcgggagcg ctgattgcta cagtacacac cagcagctag cgagaccgag 240 cgtgagaatg atcgtccccc cctctacgtt gcgcatgggc ctccttttat atgctcaagg 300 ggtcaccgac aggtggcaat gtagacgagg gcaaaaatgg aaaagacgtg gtggttggca 360 ccgccgctta ctatagtgca tcatacctaa ccctgatggc aggggacaag ggcattaaat 420 gcccgtctgc gtcgcccaaa tagtgcaaaa gggaccgcca gggacgccac cgctcgccac 480 gatggcggtc ttgtcagcgc cgcttgccac cgtgtaccgc tggctacata gcttcccacc 540 acgtacgcct ggaagggtcc caaagcgaca cgttggtgga tgtgctggag cgcaggtaca 600 gagtgggggc ttgccgcggc gagcgccttg ccgcggttgt tgtcttgtcg cgtccgggag 660 cttgtcgctc accgggcctt gctgggacgc gtggtgcgtt gcggcaagtt ccttgagatg 720 ccttggttgg ccttccggca agctcctctt gccggggtct tgtctccttc ccggcaagct 780 cctcttgccg gagtcttgga tactttgttc ttgaatggct ccaaaggaac cacggaggat 840 cttggcggtc acccgacaag ccttgccgcg ggatgctgcg actgcccgtg cacaagttcg 900 ggatactagg gtacccctac tctagtacac ggaca 935 // ID Gypsy5-SB_LTR repbase; DNA; GRAS; 1234 BP. XX AC . XX DT 23-OCT-2009 (Rel. 14.12, Created) DT 23-OCT-2009 (Rel. 14.12, Last updated, Version 2) XX DE Gypsy-type LTR retrotransposon from sorghum: long terminal DE repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy5-SB_I; KW Gypsy5-SB_LTR. XX OS Sorghum bicolor OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Sorghum. XX RN [1] RP 1-1234 RA Jurka J.; RT "LTR retrotransposons from sorghum."; RL Repbase Reports 9(12), 3101-3101 (2009). XX DR [1] (Consensus) XX SQ Sequence 1234 BP; 335 A; 268 C; 292 G; 338 T; 1 other; tgttgacggt tcttaagtat caattttaat tatcaaataa acaagagaaa ggaccaatat 60 gcaaccaaca cctagaatta gggtttgatc tgacagaatt ccacgagttt tgttgtttat 120 ctgtttctgc agggggttat caggaaataa ggaagaaagg cccacatgtc gggattacat 180 agagatatca acgcaccgcg cgattttcta ccatctagaa gactccagaa gccacgggaa 240 gaagacggag gccgaaaggg gccaggccca gggcgcccgc cctggtgacc tgggcgcccg 300 ccccctgctg gatccagttc aggactctct tcgcacggga tgttccaccg acctattgga 360 tcaagaaaac gtagtaccac ctcgcctacc gacccaaaaa cgcatagagg aggaggacta 420 tataaggaga cccccctggc ccctggagaa gacatgaaga aattatcata gagattgagg 480 ggtgccctcg aaggaaaacc tcttctctaa ttaatatttc tttttaggct tagcaaccaa 540 tgtaaagtag aaatagatct tctagtttct actagattga gagagataga gtggaggtgt 600 agattggagg aagcccggcc tgtcggtgtc tactccaagc ttgtacctgc gggatcaagt 660 tctcctaacc cgaagcttgc tcctaggatt cttcagtatt tcgacttcta aattctagta 720 agttcttgtt ttattgttct tctggtttat gagtttactt taatctcttc gcgtagagtt 780 tagagtaatc attgctggcg taaacgtggt gtttaggctg gggtactcat agatattccc 840 tgactagctg gaccgtggta gtagtgagga acgtgacaat tccgagttac ctttgcagac 900 catatctcgt tagcaggaag gatagggttt ataggtgcgg gttgaacatc ctttgtggtg 960 tctagattcc gttagcctcc ccantagaac agtagatcat ccttaccaag gttagaagga 1020 gactacggtt gcagtcttct ctatttatca ctcacatcga aagacattct ttgtgcctaa 1080 agggttagta gtaatagacc ggttagtcag atgcactctt tctcctagtg gtaaaaaaat 1140 aaatacgata ctctggataa cctcccgggt gaagtgctca ccgatatccg tgcgcttgcg 1200 gatcaattcc ttattgcgtt cccaaatatc aaca 1234 // ID OPIE2 repbase; DNA; GRAS; 6422 BP. XX AC U68408; XX DT 06-MAY-1999 (Rel. 4.04, Created) DT 06-MAY-1999 (Rel. 4.04, Last updated, Version 1) XX DE Zea mays retrotransposon Opie-2. XX KW POL gene; gag gene; OPIE2. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-6422 RA SanMiguel J.P., Tiknonov A., Jin K.Y., Motchoulskaia N., RA Zakharov D., Melake-Berhan A., Springer S.P. et al.; RT "Nested retrotransposons in the intergenic regions of the maize RT genome."; RL Science 274(5288), 765-768 (1996). XX RN [2] RP 1-6422 RA SanMiguel J.P., Tiknonov A., Jin K.Y., Motchoulskaia N., RA Zakharov D., Melake-Berhan A., Springer S.P. et al.; RT "OPIE2."; RL Direct Submission to Genbank (29-AUG-1996)Biological Sciences, RL Purdue University, 339 Hansen LSRB, West Lafayette, IN 47907, RL USA. XX DR GenBank; U68408; Positions 1274 7695. XX CC Distantly similar to BARE1_HV,TY1_PE,TTO1_NT and ATCOPIA5I. XX SQ Sequence 6422 BP; 1899 A; 1258 C; 1589 G; 1676 T; 0 other; tggtatcgga gccgttctct tcaagaaagg gactaaccgc ccgaagagat ggatcctaag 60 gggaagggaa ttgtgatcaa cgacaaggag aaggagtcct tcgtcaatga gccaagggat 120 gacaagtcca acaactcggg ctcgggccac aagcgaaaag atgggaagaa gaagaagaca 180 agacgcatca aggagatcgt ctactacgac agcgatgagt cctcttcttc ccaaaaggac 240 gacgacaacg actacaggaa gacggtcaat tcgaacttct catttgatta ttcgcgtatt 300 ccacatagtt cgaattcgca tttgctttcc attcctcttg gcaaacctcc acactttgat 360 ggggaggact acggattttg gagtcacaaa atgcgtagtc acttattctc tctccatcca 420 agcatatggg agatagtaga gaatggaatg aaatttgata gctcggatag ccctatgctt 480 ataaatgaac aaattcatag aaatgcacaa gctactactg ttctcttagc atctttgtgc 540 agggaagagt acaataaggt gagcggcttg gacaatgcca agcagatatg ggacaccctc 600 agaatctctc acgaggggaa cgacatcacc atgctcacca agatggagtt ggtggagggc 660 gagcttggac gattcgccat gataagggga gaagagccaa ctcaaactta caaccggctc 720 aagaccctta tcaacaaaat aaggagctac ggaagcacgc gttggacgga tcacgacgtc 780 gtccgcctaa tgctcaggtc ctttaccgtt cttgatcctc atctcgtgaa caatattcgt 840 gagaatccca ggtacacgat gatgacgccc gaggaagtac ttggaaaatt cgtgagcggg 900 cggatgatga tcaaggaggc aagatacgtc gacgacgcgt tgaacggtcc actccacgag 960 cctcaaccca ttgctctaaa ggcaacaagg aacaaggagt cgctacctag caaggtggcg 1020 caagttgagg cggccgggct caatgatgaa gagatggctc tcatcatcaa gagattcaag 1080 acggtgctga agggtcacaa ggggcagcca agcaagaaca agacaaaggg gaaacgctca 1140 tgcttcaagt gcggtaagat tggtcatttt atcgctaact gccccgataa cgatagtgac 1200 caggaacagg gaaacaagag ggaaaagaag aagaattaca agaaggccaa ggcgaggcgc 1260 attctaggca aggagtggga ttcggattgc tcctcctccg actccgacaa tgagggactc 1320 gccgccactg ccttcaacaa atcggccctc ttccccaacg agcatcacac ttgcctcatg 1380 gcaagggaaa agaaggtagt aatcactcgt aatactaata cttatgattc ttctagtgat 1440 gatgaatcta gtgaggatga aattgattac tctagtttat tcaagggatt ggacagaact 1500 aagatagcta agattaatga gttgattgat gccttaaatg aaaaggatag aatcttagag 1560 aaacaggaag accttttata tgaagaacat gataaatttg ttagtacaca aaattcactt 1620 gctctagaag ttaaagaatg gatactttct tgtgaacttt ctacttgtaa tgaaaccatt 1680 tcttatttaa aaggtgaaat taatgtttta actgctaaac tagaagtagc aagtaactct 1740 tgtgttgaaa atattacaat ttgcactagg tgtaaggatt ttgatgttaa tgcttgtagt 1800 gaacacttag tttcaatttc aaaactaaat gatgaagtgg ctagtcttaa tgcttaactt 1860 aagactagca aaagtgattt tgaaaaacta aaatttgcta gggatgccta cacggttggt 1920 agacacccct caattaagga tgggcttggc ttcaagaggg aagccaagaa cttaacaagc 1980 cataaggctc ccattcccgc caaggagaaa gggaaggccc ctatggctag tagtgcaaaa 2040 aggaaccatg cctttatgta tcatgatagg agacatgcta gaaatgcttg taatgatttt 2100 gattcatatg tttatgattc tcatgccatg tttgctccta gttcttcata tgtgtatgat 2160 agaaatgtta ctaggagaaa tgttgttcct aaaaagaatg ttattcatgc tcctaggaaa 2220 gtagcaaatg aaccttctac catttattat acttgcaatg ctccctttgc tatttgtaga 2280 aaggacaaga aggtaattgc taggaagtta ggggcaagat gcaagggaga taaaacttgc 2340 atttgggtcc ctaagaatat atgtgctaac cttgtaggac ccaacatgag ttgggtacct 2400 aagacccaag cctaaatttg ccttgcaggt ttatgcatcc gggggttcaa gctggattat 2460 cgacagcgga tgcacaaacc atatgacggg ggagaagaag atgttcacct cctacgtcaa 2520 gaataaagat tcccaagatt caattatatt cggtgatggg aatcaaggca aggtaaaagg 2580 tttaggtaaa attgcaattt caaatgagca ctctatttct aatgtgtttt tagtagagtc 2640 tcttggatat aacttgctat ctgttagtca attatgcaat atggggtata actgtctatt 2700 cacaaatata gatgtgtctg tctttagaag gtgtgatggt tcactagcat ttaagggtgt 2760 attagacggc aaactttact tagttgattt tgcaaaagag gaggccggtc tagatgcatg 2820 cttaattgct aagactagca tgggctggct gtggcatcgc cgcttagcac atgtggggat 2880 gaagaacctt cacaagcttc taaagggaga acatgtaata ggtctaacta atgttcaatt 2940 cgaaaaagat agaccttgtg cagcttgtca agcagggaaa caagtgggag gctctcatca 3000 caccaaaaat gtgatgacga catcaagacc cttggagatg ctgcatatgg acctcttcgg 3060 acccgtcgcc tatctgagca taggaggaag taagtatggt ctagttattg tagatgattt 3120 ttcccgcttc acttgggtgt tctttttgca ggaaaaatcc gaaacccaag ggaccctcaa 3180 acgcttcctc aggagagctc aaaatgagtt tgagctcaaa gtgaagaaga taaggagcga 3240 caacgggtcc gagttcaaga accttcaagt ggaggagttc cttgaagagg aagggatcaa 3300 gcacgagttc tccgctccct acacaccaca gcaaaatggt gtggtagaga ggaagaacag 3360 gacgctcatc gacatggcga ggacgatgct aggagagttc aagacccctg agtgcttttg 3420 gacggaagcc gtgaacacgg cttgccacgc catcaacagg gtctaccttc atcgcatcct 3480 caagaatacg tcgtatgagc tactaaccgg taacaaaccc aatgtatcgt actttcgtgt 3540 atttgggagt aagtgctaca ttctagtaaa gaagggtaga aattctaagt ttgctcccaa 3600 agctgtagaa gggtttttat taggttatga ctcaaataca aaggcgtata gagtcttcaa 3660 caaatcatcg ggtttggttg aagtctctgg cgacgttgta tttgatgaga ctaatggctc 3720 tccaagagag caagtggttg attgtgatga tgtagatgaa gaagacattc caacggccgc 3780 aatacgcacc atggcaattg gagaagtgcg gccacaggaa caagatgaac gagaacaacc 3840 ttctccctca actatggtgc atcccccaac tcaagacgat gaacaggttc atcaacagga 3900 ggtgtgtgat caagggggag cacaagatga tcatgtgttg gaggaagaag cgcaaccggc 3960 acctccaacc caagttcgtg cgatgattca aagagatcat cccgtcgacc aaattttggg 4020 tgacatcagc aagggagtaa ctactcgatc tcgattagtt aatttttgtg agcataactc 4080 ctttgtctct tctattgagc ctttcagggt agaagaggcc ttgctagatc cggactgggt 4140 gttggccatg caagaggagc tcaacaactt caagaggaat gaagtttgga cactggtgcc 4200 tcgtcccaag cagaatgttg tgggaaccaa gtgggtgttc cgcaacaaac aggacgagcg 4260 cggggtggta acgagaaaca aggctcgact tgtggcaaaa ggttatgccc aagtcgcagg 4320 tttggatttc gaggagactt ttgctcctgt ggctaggcta gaatcaattc gtatcttgct 4380 agcatatgcc gctcaccatt ctttcaggtt gtaccaaatg gatgtgaaga gcgctttcct 4440 caacgggcct ataaaggagg aggtgtacgt agagcaaccc cctggcttcg aggatgaacg 4500 gtaccccgac cacgtgtgta agctctctaa ggcgctctat ggacttaagc aagccccaag 4560 agcatggtat gaatgcctta gagatttctt aattgctaat gcgttcaagg ttgggaaagc 4620 cgatccaact cttttcacta agacatgtga tggtgatttg tttgtgtgcc aaatttatgt 4680 cgatgacata atatttggtt ctactaatca aaagtcttgt gaagagttta gcagggtgat 4740 gacgcagaaa ttcgagatgt cgatgatggg cgagttgaac tacttccttg ggttccaagt 4800 gaagcaactc aaggacggca ctttcatctc ccaaacgaag tatacgcaag atctgctaaa 4860 gcggtttggg atgaaggacg ccaagcccgc aaagactccg atgggaaccg acggacacac 4920 cgacctcaac aaaggaggta agtccgttga tcaaaaagca taccggtcaa tgatagggtc 4980 tttactttat ttatgtgcta gtagaccgga tattatgctt agcgtatgca tgtgtgctag 5040 atttcaatcc gatcctaagg agtgtcactt agtggcggtg aagcggattc ttagatattt 5100 ggttgctacg ccttgcttcg ggctctggta tccaaagggg tctacctttg acttggttgg 5160 atactcagac tccgactatg ctggatgtaa ggtcgatagg aagagtacat cggggacgtg 5220 ccaattctta ggaaggtccc tggtgtcgtg gaactctaag aaacaaactt ctgttgccct 5280 atccaccgct gaggccgagt atgttgccgc aggacagtgt tgcgcgcaac tactttggat 5340 gaggcaaacc ctcagggact ttggctacaa tctgagcaaa gtcccactcc tatgtgataa 5400 tgagagtgct atccgtatgg cggaaaatcc tgttgagcac agccgcacaa agcacataga 5460 catccggcat cactttttga gagaccacca gcaaaaggga gatatcgaag tgtttcatgt 5520 tagcaccgag aaccagctag ccgatatctt taccaagcct ctagatgaga agaccttttg 5580 caggctgcgt agtgagctaa atgtcttaga ttcgcggaac ttggattgaa ttatagcata 5640 catgtgttta tgacttttga tcatgttcat tctgcatttt gttgcttatt gtggtgctca 5700 agttgtacac acactccctg gacctcacaa gtccgttgca aagtgatgca catgtttagg 5760 gggagttgtg ttacaacttg accctttgag actaaccata tgcttgagtt tgcttgattt 5820 agtctcgaag gagaattgaa agggaaaagg gtggacttgg atcatgaaag acttccactg 5880 cactccgatg agagggtaac ttattccaag ttcatctcat gaactcctat tgccatttgc 5940 tcttaattga agattttggt gaggcaatgg ggttataggg ccaaagttga tcccgttttg 6000 gtgcttgatg ccaaaggggg agaaaataaa ggccaaagga ataaatggat cagctaccac 6060 ttgcgcttga gggatttgaa aatagtagag tagagctttt ggtttgtcaa aactctttca 6120 ttatctcttt tgtcaaaagt tagcttcttg tggggagaag tgttgattat ggaaaaaggg 6180 ggagtttttg aaatctttga ttaatctctt ttgaaatgac tctctttatg cttcaacatg 6240 tgtgtttgac tttgagatag agatttgagt ttgatttaca aaaacaaacc aagtggtggc 6300 aaaggatgat ccatatatgc caaaatcgaa tcaaaatgaa tttagttttt atttgaagtg 6360 attttgcact tgttctagtt gctttatgtt gtgttggcat aaatcaccaa aaagggggag 6420 at 6422 // ID Gypsy1-SB_I repbase; DNA; GRAS; 6668 BP. XX AC AC169376; XX DT 20-SEP-2007 (Rel. 12.09, Created) DT 20-SEP-2007 (Rel. 12.09, Last updated, Version 1) XX DE LTR retrotransposon from sorghum: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW internal portion; Gypsy1-SB; Gypsy1-SB_LTR; Gypsy1-SB_I. XX OS Sorghum bicolor OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Sorghum. XX RN [1] RP 1-6668 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from sorghum."; RL Repbase Reports 7(9), 973-973 (2007). XX DR Genome; AC169376; Positions 55453 62120. XX CC Positions [5538-6029] - Integrase core CC 'GGGGA' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS 822..1862 FT /product="Gypsy1-SB_I_1p" FT /translation="MARTRLTARKSTGGRAPRHPLAARSSRHKSKFLEEFG FT MPTLLWRVLSSMGYPEGREPRYYWDKEPLGDETLVGIEAVVPTSGGDPAWG FT GWVYESRGVTPFHGASRAAFAVLRDLMERFPQELAHAFAGVFPRGDPYTSV FT WDQSEVNALERSADEDQHSDSAAMSAMYALMKTYGGLERCLGRLSGSLLTV FT QDEKRQLQREFDSEVERLQAELARVTRERDQAVQQSSELSQDLLAVREQKD FT RVTTAHRNCERMLVHVLGQRNEAWHEEDTLRARQLELEQQLANAEEYNENL FT HEEIHQLHNQLHPHHLPGAAELDSEDEMDADPEIGAAASGDEDEDGSGMDS FT DHSE" FT CDS 2184..6653 FT /product="Gypsy1-SB_I_2p" FT /translation="MQMVQTRGGGNGHPGLGASASGNGAQRNEDQAPTPPP FT PPPYTADVFFAQFLGSQRNMEQMQRNMEEALRNIADNTRRGDNQGGREVNQ FT YSSFKDFLDTKPPIFKEALEPLEADEWINTMEQKFRLLRMTEELKAEYAAH FT QLQGPAGIWWSHHRTTYPEGTPITWNRFTTAFRGNYIPPGMVEMKVGEFMR FT LSQGTKSVKEYLHAFNNLARYAPEFVNTEAKKIASFQRGLNPKMLKTMGTG FT ARATFNAYISDCLTQENNNNNYSASKSRKRAFEAGSSQFRAPVAGRPQYRP FT PAPGARFRPPQRRNTGHPTQQKPYKVAIAPAKPKAIQAAAPAVNNAPKGPC FT YNCHKMGHFAKECPYPKRQQPTYPARVHHTSIEEIPEGEPVTAGMFPVNQH FT LAVVLFDSGSSHSFMSQAFAQKHDQPVTELGYGYRISSAGADVLTNKTVTG FT VTLDISGRRFRVNLVVMPGLVLDVIIGMNKMTDWGTVIDVGNRTLSLREPQ FT GKGVFQIKLPRRLDFASLSCAVQAVPLEHIPVVCEFPDVFPEELPGLPPDR FT EVEFAIELIPGTAPISRRPYRMPPNELAELKKQLKELLEKGFIRPSSSEWG FT CPALFVKKKDQSLRMCVDYRPLNAVTIKNKYPLPRIDILFDQLSKARVFSK FT IDLRSGYHQIKIRPQDIPKTAFSTRYGLYEYLVMSFGLTNAPAYFMYLMNS FT VFMPELDKFVVVFIDDILVYSENEQDHAEHLRIVLTRLREHQLYAKFSKCE FT FWLKKVPFLGHILSEEGIAVDPSKVQEVMDWKAPTSVSEVRSFLGLAGYYR FT RFIPDFSKIAKPMTSLLQKDHKFVWTEGCELAFRTLRRLLTTAPVLAQPNI FT EKPFDVFCDASKSGLGCVLMQDGRVIAYASRQLRKHEVNYPTHDLELAAVV FT HALKIWRHYLLGNKCHIYTDHKSLKYIFTQSELNMRQRRWLELIKDYDLEV FT HYHPGKANVVADALSRKPHYQMIQPLFEDGFNLMHPEVLCHIQLSCSLESQ FT VIEGQKTDKGIFHIKEKIKDDPKTQFRVDEKGVLWFQQRLVVPKDRELKNR FT IMDEAHLSKLSIHPGSSKMYQDLRPHFWWTKMKKEIAAYVARCDTCCRVKA FT IHMKPAGLLQPLSVPEWKWEEVSMDFITGLPTTRKGNDSIWVIIDRLTKSA FT HFIPVKTRYRPPEYADIYMAEIVKLHGIPKAIISDRGPQFTAHFWERMHKS FT LGTSLIRSTAYHPQTSGQTERLNQVLEDMLRACVLSSKGSWESWLPLAEFS FT YNNSYQESIKMAPFEALYGRRCRTPLNWVEPGERRYYGIDFVNEAEKKVQI FT IQQHMQAAQSRQKSYADKRRRPLEFNIGDYVYLKVTPMKKVQRFRIRSKLA FT PRYVGPYQVLERKGPVAYKIQLPEEMSSIFPVFHVSQLRKCLKVPEQRIEP FT RGIKIKADLEYKEQPVRIVDTKERVTRNKVVRTYKVVWSHHDDRDATWETE FT DYLKTVYPKFHKKWLVTQNLGTRFP" XX SQ Sequence 6668 BP; 1768 A; 1440 C; 1799 G; 1661 T; 0 other; gctggcatcg gagcaaagtt tagcgagtta ctgttcataa gtaccttcta aacaaaagcc 60 tagaacggtt taatgaaaaa ttttagtaat ttataaagat caaggtgtta aactgagttt 120 tggaaaaact atctagtgtg ccatggtcat atcctttatg cccagttaag gactctaagg 180 tggctagcta agtactgact cgggggttaa tgcatcatat tttcatttcg tcgctcatac 240 ggcgtgcaat agtatgagtg ccattcattt gagtggtaat gtatggatca attcttcctc 300 tacgccatgg taagtgggag ttgtgagagc atgatcggat acactgccgg tctagggaag 360 tgttgtcagg tgctgtgtca tgcacacatg ttggtgtgtc ttgggaacag taccgcatgc 420 tgggaattcc gtcctgagag acgatgccgt cattagggcg atgatgtgga tagtgacacg 480 tcacatgcct ggacgggtgt ctgtgtatgt gaagtgcata gttttaaatt ttgttctgca 540 cgatcacatt gtgggtgggc tgaaatgagt tttctgcagg tactctaacc acgttctcgc 600 ttagaacgct agttacgtta tgagagaacg ttgtgtgcca ccgcatatac cgcttagtgt 660 taacctttgt tttctaagtt tgtgagatcg taagttcgta catgcatcat gtgcatttca 720 tatcattgct tactttcccc cttaatttaa tctgtctcaa ttctaaacaa aataactaaa 780 ggtaatcctc gctcttaccc acggtattcc atttgcagca gatggcacgc actaggctca 840 cggctcgcaa gtccactggt gggcgggccc ctcgccatcc gttggcagct aggagctcgc 900 ggcataagag caagttccta gaggagtttg ggatgcccac tttgctttgg agggtgctca 960 gttcgatggg gtatcccgaa ggaagggagc ctcgctacta ctgggacaag gagccgcttg 1020 gtgacgagac cctggtgggg atcgaggcag ttgtccctac cagcggagga gaccctgctt 1080 ggggcggctg ggtgtacgag tcccgaggtg tcacgccttt ccacggtgcc agcagggcag 1140 cttttgcagt tctgagggac ctcatggaga ggtttccaca ggagctggcc cacgccttcg 1200 ctggggtgtt tccccggggt gacccttaca cttcggtgtg ggatcagtcc gaggtgaatg 1260 ctctagagag gagtgcggat gaggaccagc acagtgacag tgcagctatg agtgccatgt 1320 acgcgttgat gaagacctat ggaggcctag agcgttgttt gggtcgcttg tccgggtctc 1380 ttctcaccgt ccaggatgag aagcgtcagt tgcagcgtga gtttgactct gaggttgaga 1440 ggctacaggc agagttggct cgtgtgacca gagagagaga ccaggccgtc cagcagagca 1500 gtgagctgag tcaggacctg ctcgcagtac gggagcagaa ggacagggtg actactgctc 1560 acaggaactg cgagcgcatg ctagtccatg tgcttggaca gaggaatgaa gcctggcacg 1620 aggaggacac tttgagggcc cgacagctag agctagagca gcagctagct aatgccgagg 1680 agtacaatga gaacttgcat gaggagatcc accagctgca taaccagctc caccctcacc 1740 accttcctgg ggcagcggag ctagactctg aggacgagat ggacgcggat cccgagatag 1800 gagcagctgc tagcggtgac gaggatgagg atggctctgg catggacagt gaccacagcg 1860 agtagatgct agggccctag agctagtctt ctctcttttg tgatgtatgt tgcgtggcat 1920 gtcatgtact tttggatctg ggctgtgtaa gactttatga gttggtacgg aaagtccagt 1980 gtatgtatgc tggcaagttg gatgtacgcg aaccttgttg cgtgaatgat aagtaatctg 2040 ttagtgatgt tgtgcgtgga taatgagttg ttgtgccttt gtttattgtg tgaatttatt 2100 ccctcagtaa attcagtatg gcacgatttt acacatttcc taccggttga tggcaactcc 2160 taacgattgc ttatcattgg catatgcaga tggtacaaac acgtggcggg ggtaacggcc 2220 atccaggtct tggagcaagt gcatctggaa atggggctca acggaatgag gatcaagcac 2280 caacaccacc accacctccc ccgtacactg cggatgtgtt tttcgcgcag tttctgggaa 2340 gccaacgcaa catggaacag atgcagcgca atatggaaga agctttgcgc aacatagctg 2400 acaacacccg tcgtggagat aatcagggcg gtcgagaggt caaccagtac agctcgttca 2460 aggacttcct ggacaccaag ccaccaatct ttaaggaggc cttggaaccg ctcgaagcgg 2520 atgagtggat caacaccatg gagcagaagt ttcgtcttct ccgaatgaca gaagaactca 2580 aggctgagta tgcggcacat cagttgcaag gacccgctgg gatttggtgg tcccatcacc 2640 gtaccaccta cccagagggg acaccaatca cctggaaccg cttcaccacc gctttccggg 2700 gaaattacat tcctcctggt atggttgaaa tgaaggttgg ggagttcatg aggctgtccc 2760 aagggacgaa atctgtaaaa gagtatctac atgccttcaa taatctcgct cgatatgccc 2820 ctgagtttgt aaacacagag gccaagaaga ttgctagttt ccagagaggc ttaaatccaa 2880 agatgctgaa gaccatgggt acaggggcca gggctacttt caatgcctat atcagtgact 2940 gtctgaccca agagaacaat aacaacaact acagtgcgtc caagtcacgc aaaagggctt 3000 ttgaagcagg atcatcccag ttcagggcac cagtggcagg gcgaccgcag tatcgtcctc 3060 ctgccccggg tgctaggttc cgaccaccgc agagaaggaa caccgggcat ccaacacagc 3120 agaagccgta caaggtggcg atagctcctg ccaagccaaa ggccattcaa gctgcagcac 3180 ctgccgtcaa taacgcgccc aagggtccgt gctataactg ccacaagatg gggcactttg 3240 ctaaggaatg tccctacccc aagaggcagc agccaacata tccagctcgc gtgcatcata 3300 cctcgattga ggaaattccg gaaggagaac cggtaacagc tggtatgttt cctgtcaacc 3360 aacatcttgc agttgttttg tttgattctg gatcatcgca ttctttcatg agtcaagcat 3420 ttgcacaaaa gcatgatcag ccagttactg agttaggtta tggctatcgc atcagctcag 3480 ccggggccga tgtgttgact aataagacgg taacaggggt tactttggat atcagtggcc 3540 ggaggtttcg tgtaaacctt gtggtcatgc caggactggt tttggacgtc atcattggta 3600 tgaacaagat gactgactgg ggcacggtta tagatgttgg aaacagaact ctttccctca 3660 gagagccgca agggaagggt gtgtttcaga tcaagttacc ccggcggttg gacttcgcca 3720 gtctttcgtg tgcagtacag gcagttccct tagaacacat acccgtggta tgtgagttcc 3780 cggatgtgtt tcctgaggaa ttaccaggac ttcccccaga tagggaggta gagtttgcga 3840 tcgagttgat accaggtaca gcaccaatat ctagaaggcc gtatcggatg cccccaaatg 3900 aactcgcaga attgaagaaa caactgaagg aattattgga aaaagggttc atccggccca 3960 gctcgtcgga atggggttgt ccagcgttgt ttgtgaaaaa gaaggatcag tcgttgcgca 4020 tgtgcgtgga ctatcgtcca ctcaatgcag tgacaatcaa gaataagtat cccttgccaa 4080 ggattgatat cctgtttgat cagttatcca aggccagagt gttttccaag atagatttga 4140 gatccgggta tcaccaaatc aagattcgtc cgcaagatat cccgaagact gctttttcca 4200 ccagatatgg gttgtacgag tatcttgtca tgtcctttgg gttgacaaat gctcctgcat 4260 actttatgta tctgatgaat tcagtcttta tgccagaatt ggataagttt gttgtggtgt 4320 ttatcgatga tatcttggtg tattcagaga atgagcaaga tcacgccgaa catctgagaa 4380 tcgtgctgac ccgattacga gagcatcagt tatatgccaa attcagcaag tgtgagttct 4440 ggttgaagaa agttccgttc ctagggcaca ttttgtctga agaaggaatt gccgtggatc 4500 catcaaaagt gcaggaagtc atggattgga aggcaccaac ttctgtctcg gaagttagaa 4560 gttttcttgg tctggccggg tattatcgtc gtttcatacc tgacttctcc aagattgcta 4620 agccaatgac aagtttgcta caaaaggatc ataagttcgt ctggacggaa gggtgtgagt 4680 tagccttccg caccttgcga aggttgctaa ccactgctcc cgttctggca caacctaata 4740 tagagaagcc ttttgatgtg ttttgtgacg catcaaagag tggcctgggg tgtgtgttga 4800 tgcaagatgg cagggtgata gcttatgctt cccgacagct aagaaagcat gaagtcaact 4860 atccaacgca cgaccttgag ttagcagctg tggtgcatgc tttgaagatc tggagacatt 4920 atctgctagg gaataagtgt cacatttaca ccgatcacaa gagtttgaag tacatcttca 4980 cgcagtccga gctgaatatg aggcagcgac ggtggttaga gctaatcaag gattatgacc 5040 tggaagttca ctatcatcca ggtaaagcca atgtggtcgc agatgctttg agtcgcaaac 5100 cgcactatca aatgattcaa ccgttgtttg aagatgggtt caatcttatg catcctgagg 5160 tcttatgcca tatacaactc agttgttcac tcgagagtca agtcattgaa ggtcagaaaa 5220 cagacaaggg tattttccac atcaaagaga agattaaaga tgacccaaag actcagtttc 5280 gggttgatga gaagggagta ctatggtttc aacagcggtt agtggtcccg aaagatcggg 5340 agttgaagaa tcgcatcatg gatgaagccc atctttctaa gctttctatt catccgggca 5400 gcagcaaaat gtatcaagat ctaaggcccc acttttggtg gactaagatg aagaaagaaa 5460 tagcagctta tgtggcccgt tgtgacacgt gttgcagggt taaggccatc catatgaaac 5520 ctgcaggtct gttgcaacct ttatcggtgc cggagtggaa atgggaagag gtcagtatgg 5580 actttatcac gggtttacca accacaagga aggggaatga ctcgatttgg gtaatcatag 5640 atcgattaac caaatcggcc catttcatcc ctgtgaagac tcgttacaga cctcccgagt 5700 atgctgatat atatatggct gagatcgtca aattgcatgg tattcccaaa gctatcatat 5760 cggatagagg accgcagttt actgctcact tctgggagcg catgcataag agcctgggga 5820 ccagtctgat aagaagcacg gcgtatcatc cccagacttc aggtcaaacc gagaggttaa 5880 atcaagtgtt agaagatatg ctgagggcct gtgtgctatc atccaaggga tcatgggaat 5940 cgtggttacc tttggctgaa ttctcctaca ataatagtta tcaagagagc atcaagatgg 6000 ccccgttcga agctttgtat gggcggagat gtcgaactcc tttaaactgg gttgaacctg 6060 gtgaaagaag atactatggt atcgacttcg tgaatgaagc agagaaaaag gtgcagatca 6120 tacagcaaca tatgcaagcg gcacagtcac gacaaaagag ttatgccgat aagagaagaa 6180 ggccacttga attcaacata ggtgactatg tgtacctcaa ggttacgcca atgaagaaag 6240 ttcagcgttt ccgaattcga agtaagcttg cacccagata tgtgggaccg taccaagtgc 6300 tagagaggaa aggcccagtg gcctataaga ttcagttacc tgaggagatg agctcgatct 6360 ttccggtctt tcatgtgtcg cagctacgga aatgtttgaa ggtgccagag caaagaatcg 6420 aacctcgagg aatcaagata aaagcggact tggaatataa ggagcagcca gtgagaatcg 6480 tggataccaa ggagcgagta acccgaaaca aagttgtcag aacatataag gtggtgtgga 6540 gtcatcatga cgatagggat gccacctggg aaacagagga ttacttaaaa acagtttatc 6600 caaagtttca taagaaatgg ttagtaaccc aaaatctcgg gacgagattt ccctaagggg 6660 ggaagggc 6668 // ID Gypsy2-SB_LTR repbase; DNA; GRAS; 462 BP. XX AC AF369906; XX DT 20-SEP-2007 (Rel. 12.09, Created) DT 20-SEP-2007 (Rel. 12.09, Last updated, Version 1) XX DE LTR retrotransposon from sorghum: long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy2-SB; KW Gypsy2-SB_LTR; Gypsy2-SB_I. XX OS Sorghum bicolor OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Sorghum. XX RN [1] RP 1-462 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from sorghum."; RL Repbase Reports 7(9), 976-976 (2007). XX DR Genome; AF369906; Positions 54026 54487. XX SQ Sequence 462 BP; 126 A; 122 C; 113 G; 101 T; 0 other; tgtgggggta caaaccccta tacccttacg gctagacttg ggccaggagg cttggcccat 60 tacgagacga gttcaaggct tgatccgaca acctggagtt tcgcgcaagg aaacaagatg 120 tggagatcaa gcaggattct agtcggttag aataggaatt gatatcgaat tatccatggc 180 aattgtaacc gactaggatt agtttccaga tctgtaaccc tgccctccgg actatataag 240 gaggggcaag ggacccccct aggacacatc ataatctctc aacacaatcc aatacaaccc 300 gacgcaggac gtaggtatta cgccaactcg gcggccgaac ctggataaaa agcttgtccg 360 tgtcctgcgt caccatcgag ttcgtagttt gcgcaccgtc taccgataaa ctactaccgt 420 gggtataccc caaggtagac tgccgaccag ctttcgtcga ca 462 // ID CRM_INT repbase; DNA; GRAS; 5710 BP. XX AC AY129008; XX DT 08-JUL-2004 (Rel. 9.06, Created) DT 27-JUL-2005 (Rel. 9.06, Last updated, Version 2) XX DE Zea mays CRM centromeric retrotranposon, complete sequence. XX KW LTR Retrotransposon; Transposable Element; CRM_INT; KW internal sequence. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RA Zhong X.C., Marshall B.J., Topp C., Mroczek R., Kato A., RA Nagaki K., Birchler A.J., Jiang J. and Dawe K.R.; RT "Centromeric Retroelements and Satellites Interact with Maize RT Kinetochore Protein CENH3."; RL Plant Cell 14(11), 2825-2836 (2002). XX RN [2] RA Zhong X.C., Topp C. and Dawe K.R.; RT "CRM_INT."; RL Direct Submission to Genbank (03-JUL-2002)Plant Biology, RL University of Georgia, 2502 Plant Miller Sciences Building, RL Athens, GA 30602, USA. XX DR Genbank; AY129008; Positions 931 6640. XX FH Key Location/Qualifiers FT CDS 1023..5708 FT /product="AAM94350.1" FT /note="gag-pol polyprotein; GI:22296822" FT /translation="MAGLEVDDASRNMPHSPRTKGIIQHFVRLVKTHTEGL FT DNDMQVTNEKMGQLEATQIDTNTKLANVEMTVAHIDKSLVALLRRFDEMHA FT NTNGGRDEGAEGNWDDYVADTEQDDQEAPNRRRLRTNRRGMGGFHRREVHG FT NDDAFSKVKFKIPPFDGKYDPDAYITWEIAVDQKFACHEFPENARVRAATS FT EFTEFASVWWIEHGKKNPNNMPQTWDALKRVMRARFVPSYYARDMLNKLQQ FT LRQGTKSVEEYYQELQMGMLRCNIEEGEESAMARFLGGLNREIQDILAYKD FT YANVTRLFHLACKAEREVQGRRASARSNVSAGKSTPWQQRTTTSMTGRTLA FT PTPSPSRPAPPPSSSDKPRASSTNSATKSAQKPAGSASSVASTGRTRDVLC FT YRCKGYGHVQRDCPNQRVLVVKDDGGYSSASDLDEATLALLAADDAGTKEP FT PEEQIGADDAEHYESLIVQRVLSAQMEKAEQNQRHTLFQTKCVIKERSCRL FT IIDGGSCNNLASSDMVEKLALTTKPHPHPYHIQWLNNSGKVKVTKLVRINF FT AIGSYRDVVDCDVVPMDACNILLGRPWQFDSDCMHHGRSNQYSLIHHDKKI FT ILLPMSPEAIVRDDVAKATKAKTENNKNIKVVGNNKDGIKLKGHCLLATKT FT DVNELFASTTVAYALVCKDALISIQDMQHSLPPVITNILQEYSDVFPSEIP FT EGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVR FT ESLSPCAVPVILVPKKDGTWRMCVDCRAINNITIRYRHPIPRLDDMLDELS FT GAIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPST FT FMRLMNEVLRAFIGKFVVVYFDDILIYSKSMDEHVDHMRAVFNALRDARLF FT GNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHGWPMPKTITQVRSFL FT GLAGFYRRFVKDFSTIAAPLNELTKKGVHFSWGKVQEHAFNVLKDKLTHAP FT LLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGSVLNYSTYD FT KELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFI FT ESFPYVIKHKKGKENIIADALSRRYTLLNQLDYKIFGLETIKDQYVHDADF FT KDVLLHCKDGKGWNKYIVSDGFVFRANKLCIPASSVRLLLLQEAHGGGLMG FT HFGAKKTEDILAGHFFWPKMRRDVVRLVARCTTCQKAKSRLNPHGLYLPLP FT VPSAPWEDISMDFVLGLPRTRKGRDSVFVVVDRFSKMAHFIPCHKTDDATH FT IADLFFREIVRLHGVPNTIVSDRDAKFLSHFWRTLWAKLGTKLLFSTTCHP FT QTDGQTEVVNRTLSTMLRAVLKKNIKMWEDCLPHIEFAYNRSLHSTTKMCP FT FQIVYGLLPRAPIDLMPLPSSEKLNFDATRRAELMLKLHETTKENIERMNA FT RYKFASDKGRKEINFEPGDLVWLHLRKERFPELRKSKLLPRADGPFKVLEK FT INDNAYRLDLPADFGVSPTFNIADLKPYLGEEVELESRTTQMQEGE" XX SQ Sequence 5710 BP; 1613 A; 1025 C; 1334 G; 1738 T; 0 other; gttggtaatc agagcaaggt ttatcggtga gagatttact tttcttcgct gttttcttat 60 ctcctatagt ccagaaaaag ccaaaaaaat agtagattag ttttaccgca atcctataaa 120 ccattgagca tttactagta ctacttagtt agggcttgtt gagtttttgg ttgcatcggt 180 tgtgtcgagt tgctggtctt agtttattcc tttagagttt tgagttctac cacgttttgg 240 tcaccacgag atccaccatc accaaaaaca tctctggttc gtttttgcca ccacggatac 300 atatcatatc cgatttggaa gtttaaatac aatctggaaa gcttatctta tcttctttcc 360 aacggatctg accttatctc aaaattcgtt ctgagcgctc cgcaatcatc gtagagattt 420 ctggactttc tatattaaca agatttgtta aatctgattt aaaggggttg ttagcaatat 480 ctttattgtt tgggttgtca tagtgaaaaa aagggtttag gcccctgcaa aaaaaaacag 540 aagaagaaga aaaaaaaaga atagaaaaga aaaaaaagga aaagaagaag aagggggctg 600 aatctctaaa tctgttgttt ctctttgtgc tgtgctagtt gttctttttc agtgactacc 660 tttgtgccta ggctcacgtc tctagcctgg tttagcctag gaccagcaca gtaccaccgt 720 tgaacgatta ttcagcttgc ttttgtaact aacgtggtac tagtgtattc cttgcttcag 780 cccacctaca actctacata tttcgactac agtttgacag gtcgtgttgc tgcggcaccg 840 atacacttat tccacggttg cagacttgtt ggttgctgac ccctcctgtt gtgcaaggta 900 agaattggta agagcttgtg tggcaggttg agagtgagcg ccttgcagta gctacatcct 960 aatagttgta gagtttttat tccttcacat ttttttttct tgttgcctct gttcgtctaa 1020 ccatggcagg attggaggtt gatgatgctt ctcgtaatat gccacactct cctcgcacca 1080 agggtatcat acaacacttt gtaaggctgg tgaaaacgca cacggaaggt cttgataatg 1140 acatgcaggt gacgaatgaa aagatggggc aattggaggc cacacagatc gacacaaaca 1200 ccaaacttgc aaatgtggaa atgacagttg ctcatattga caagagcctt gtcgcactct 1260 tgaggcgatt tgatgagatg catgctaata ccaatggtgg gcgtgatgag ggcgccgaag 1320 gtaactggga tgactatgtt gctgatactg aacaagatga ccaagaagca cctaatcgcc 1380 ggcgactacg tactaaccgt agaggtatgg gtggttttca ccgacgtgag gtacatggta 1440 atgatgatgc ttttagtaag gttaaattta aaatacctcc ttttgatggt aaatatgacc 1500 ctgatgctta cattacttgg gagattgcgg ttgatcaaaa gtttgcatgc catgaatttc 1560 ctgagaatgc gcgggttaga gctgctacta gtgagtttac tgaatttgct tctgtttggt 1620 ggatagaaca tggtaagaag aatcctaata acatgccaca aacttgggat gcgttgaaac 1680 gggtcatgcg ggctagattt gttccttctt attatgcacg tgatatgtta aacaagttgc 1740 aacaattgag acagggtact aaaagtgtag aagaatatta tcaggaatta caaatgggta 1800 tgctgcgttg taacatagag gagggtgagg aatctgctat ggctagattt ttgggcgggt 1860 taaataggga aattcaggac atccttgctt ataaagatta tgctaatgta acccgattgt 1920 ttcatcttgc ttgcaaagct gaaagggaag tgcagggacg acgtgctagt gcaaggtcta 1980 atgtttctgc aggaaaatct acaccatggc aacagcgcac gactacgtcc atgaccggcc 2040 gtacactagc accaactccc tcgccaagtc gaccagcacc cccgccttcc tccagcgaca 2100 aaccacgtgc atcttccaca aattcagcaa ccaaatctgc ccagaaacca gcaggtagtg 2160 cctcttcagt agcctccacg ggtagaacaa gagatgttct gtgttatcga tgcaagggct 2220 atggacacgt gcagcgtgat tgtcctaatc agcgtgtttt ggtggtaaaa gacgatggtg 2280 ggtattcctc tgctagtgat ttggatgaag ctacacttgc tttgcttgcg gctgatgatg 2340 caggcactaa ggaaccaccc gaagaacaga ttggtgcaga tgatgcagag cattatgaga 2400 gcctcattgt acagcgtgtg cttagtgcac aaatggagaa ggcagagcag aatcagcgac 2460 atacgttgtt tcaaacaaag tgtgtcatta aggagcgttc atgtcgtttg atcattgatg 2520 gaggtagctg caacaacttg gctagcagcg acatggtgga gaagcttgca cttacgacca 2580 aaccgcaccc gcatccatat cacattcaat ggctcaacaa tagtggtaag gtcaaggtaa 2640 ccaagctggt acgaattaat tttgctattg gttcatatcg tgatgttgtt gactgtgatg 2700 ttgtgcctat ggatgcttgt aatattctgc taggtagacc atggcaattt gattcagatt 2760 gtatgcatca tggtagatca aatcaatatt ctctcataca ccatgataag aaaattattt 2820 tgcttcccat gtcccctgag gctattgtgc gtgatgatgt tgctaaagct accaaagcta 2880 aaactgagaa caacaagaat attaaagttg ttggtaataa caaagatggg ataaaattga 2940 aaggacattg cttgcttgca acaaaaactg atgttaatga attatttgct tccactactg 3000 ttgcctacgc cttggtatgc aaggatgctt tgatttcaat tcaagatatg cagcattctt 3060 tgcctcctgt tattactaac attttgcagg agtattctga tgtatttcca agtgagatac 3120 cagaggggct gccacctata cgagggattg agcaccaaat tgatcttatt cctggtgcat 3180 ctttgccgaa tcgtgcgcca tataggacaa atccagagga aacaaaagaa attcagcgac 3240 aagtgcaaga actactcgac aaaggttacg tgcgtgagtc tcttagtccg tgtgctgttc 3300 cggttatttt agtgcctaaa aaagatggaa catggcgtat gtgtgttgat tgtagggcta 3360 ttaataatat cacgatacgt tatcgacacc ctattccacg tttagatgat atgcttgatg 3420 aattgagtgg tgccattgtc ttttctaaag ttgatttgcg tagtgggtac caccagattc 3480 gtatgaaatt gggagatgaa tggaaaactg ctttcaaaac taagttcgga ttgtatgagt 3540 ggttagtcat gccttttggg ttaactaatg cacctagcac tttcatgaga ttaatgaacg 3600 aggttttgcg tgccttcatt ggaaaatttg tggtagtata ctttgatgac atattaatct 3660 acagcaaatc tatggatgaa catgttgatc acatgcgtgc tgtttttaat gctttacgag 3720 atgcacgttt atttggtaac cttgagaagt gcacattttg caccgatcga gtttcgtttc 3780 ttggttatgt tgtgactcca cagggaattg aggttgatca agccaaggta gaagcgatac 3840 atggatggcc tatgccaaag actatcacac aggtgcggag tttcctagga cttgctggct 3900 tctatcgccg ttttgtgaag gactttagca ccattgctgc acctttgaat gagcttacga 3960 agaagggagt gcattttagt tggggcaaag tacaagagca cgctttcaac gtgctgaaag 4020 ataagttgac acatgcacct ctcctccaac ttcctgattt taataagact tttgagcttg 4080 aatgtgatgc tagtggaatt ggattgggtg gtgttttgtt acaagaaggc aaacctgttg 4140 catattttag tgaaaaattg agtgggtctg ttctaaatta ttctacttat gataaggaat 4200 tatatgctct tgtgcgaaca ttagaaacat ggcagcatta tttgtggccc aaagagtttg 4260 ttattcattc tgatcatgaa tctttgaaac atattcgtag tcaaggaaaa ctgaaccgta 4320 gacatgctaa gtgggttgaa tttatcgaat cgtttcctta tgttattaag cacaagaaag 4380 gaaaagagaa tatcattgct gacgctttgt ctaggagata tactttgctg aatcaacttg 4440 actacaaaat ctttggatta gagacgatta aagaccaata tgttcatgat gctgatttta 4500 aagatgtgtt gctgcattgt aaagatggga aaggatggaa caaatatatc gttagtgatg 4560 ggtttgtgtt tagagctaac aagctatgca ttccagctag ctccgttcgt ttgttgttgt 4620 tacaggaagc acatggaggt ggcttaatgg gacattttgg agcaaagaaa acggaggaca 4680 tacttgctgg tcatttcttt tggcccaaga tgagaagaga tgtggtgaga ttggttgctc 4740 gttgcacgac atgccaaaag gcgaagtcac ggttaaatcc acacggtttg tatttgcctc 4800 tacccgttcc tagtgctcct tgggaagata tttctatgga ttttgtgctg ggattgccta 4860 ggactaggaa gggacgtgat agtgtgtttg tggttgttga tagattttct aagatggcac 4920 atttcatacc atgtcataaa actgacgatg ctactcatat tgctgatttg ttctttcgtg 4980 aaattgttcg cttgcatggt gtgcccaaca caatcgtttc tgatcgtgat gctaaatttc 5040 ttagtcattt ttggaggact ttgtgggcaa aattggggac taagctttta ttttctacta 5100 catgtcatcc tcaaactgat ggtcaaactg aagttgtgaa tagaactttg tctactatgt 5160 taagggcagt tctaaagaag aatattaaga tgtgggagga ctgtttgcct catattgaat 5220 ttgcttataa tcgatcattg cattctacta caaagatgtg cccatttcag attgtatatg 5280 gtttgttacc tcgtgctcct attgatttaa tgcctttgcc atcttctgaa aaactaaatt 5340 ttgatgctac taggcgtgct gaattgatgt taaaactgca cgaaactact aaagaaaaca 5400 tagagcgtat gaatgctaga tataagtttg ctagtgataa aggtagaaag gaaataaatt 5460 ttgaacctgg agatttagtt tggttgcatt tgagaaagga aaggtttcct gaattacgaa 5520 aatctaaatt gttgcctcga gccgatggac cgtttaaagt gctagagaaa attaacgaca 5580 atgcatatag gctagatctg cctgcagact ttggggttag ccccacattt aacattgcag 5640 atttaaagcc ctacttggga gaggaagttg agcttgagtc gaggacgact caaatgcaag 5700 aaggggagaa 5710 // ID XILON1_ZM_I repbase; DNA; GRAS; 6292 BP. XX AC AF448416; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Zea mays retrotransposon XILON1_ZM_I, internal region. XX KW LTR Retrotransposon; Transposable Element; KW target site duplication; internal region; internal portion; KW XILON1_ZM_I. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-6292 RA Fu H. and Dooner K.H.; RT "Intraspecific violation of genetic colinearity and its RT implications in maize."; RL Proc. Natl. Acad. Sci. U.S.A 99(14), 9573-9578 (2002). XX DR Genbank; AF448416; Positions 3706 9997. XX SQ Sequence 6292 BP; 1641 A; 1428 C; 1669 G; 1554 T; 0 other; taagtggtat caaagccgtg ctgactgtag gaccgctaac ctagagtaga atggtcgttc 60 taaggattat agacctctgt ctcttccttg actttgatat cccttcaaaa gttggtccta 120 ctgaccaaac ctatgttcta ctacatatta taccttgcta aaaaattgtg tttcattctg 180 atccttcatt tacttattac ttgctggtca tattaattct gttctcaccc ttttgcttgc 240 gatgtctttt gtagatggct cgacttagac acactgcacg aaagtcagtc atccccttct 300 taccctcccg tcttgctgag cgtccgcttc gccgtcccgt ggccggacag tccagccact 360 tggagagact acaccaccgc ctgcgtgagg agcaggaacg tcgacgacag gagcagcgga 420 gctcttccct ctcgctccac caggagatag agtctgtgag gagctgctcc cctgtgcttt 480 ctctggagcc gccccctgca ccaccactgg gcgccccagc ttctggagta gctgctggag 540 gagacccaga cgacggagga ggcgacgaca gctcgagcca cgacaccgac ttctctgcta 600 atcctgagcc ggaaggatgg gttgctcgac ccatcactcg cgacgctgct cgcgggtgtc 660 acttccatga tgcgctcgac accctgctac gtcgggcatt tgaccggcat acttggtccg 720 tcgagtatcg ctgtgtggtc taccagcata ttcgcggggt ctacccggac cgctgggagg 780 cgacttgctt ggtgcgctgc ccggaggaca gtctccaggg tgcagaggcc tgtttaaagc 840 actattttat ttctgagcgg gactcagctg aggcagccat gcaagatgct gcacggggtg 900 cgctttcgca atactgctcg gttttcggtg gggcagctga cggtcttgac ctgaagtatt 960 acccccgccg ttcatctggc agcacaggag gcgtgattgt ctcacccgtc ggtgagggca 1020 atcctaggtt gagcagcaca gtcaacctag ccgccgtgct aaacacggag ctggaccatg 1080 cattagacga gctgagtagg gctcgtgctg agatcgccct gctgcgggct gagcgcgcgg 1140 aacgtcgttt tctggacggt ggatcccccg ctcccgttgg gactcagcac ccgtaccgct 1200 cacctcagcg tggacaccag tcttatggca atcccgcctg caagaccaag ataaatctag 1260 aaccatagat cgttagagtt ggatcttgta attaatacga aataaatata tacatggaag 1320 cttcagtctt agcgttagcc tcgatcttag ttagttttag ttagacaggg tagtttgcta 1380 tatcctgtgc atctatgttt gtcatgatga actatgtttg gtttggatct ttgtaatgat 1440 tgtcaccaga gtgtgggtat cccctgcatt ttggtttaca tactatgtca ataaagttag 1500 ttatatagtt gggaaaccca ttattctcct ttcctcttta tctgagaagc tgtgtggtct 1560 gtgttggaga tcagtgaaga tgctcatctg ttcagtgctg ttggagaatt ctatactctt 1620 ttcttatgct gcaagctttg ccagatcagt tctgatgtgt ggttgcgttc tgcagatgtc 1680 agagaacagg cgtagaggag gaaggcgtgc tcagcaggag cgagccgctc cgcaggatga 1740 ggtgccccag cagcagcacc tgccgccccc gcccccgatg tcgattgagc agatgtttct 1800 gatgcagact caggcagttc aagctatcgg tcagactttg gccgccattc agcagcagca 1860 gcagcagcag cagcaagcac caccccagcc tcagatgcct cagatgccta gagataagcg 1920 tgctgaattc atgagaggtc atccaccaac gttcgctcac tcttctgacc ccatggatgc 1980 tgaagattgg ctgcgcactg tggagcggga gttgcatacc gctcagtgcg atgacaggga 2040 gaaagtcttg tatggtcccc gtctgttgag aggagcagcc cagtcatggt gggagtctta 2100 cctcgccacc catgcccatc ctgacgccat cacctgggag gaattcagag gtagctttcg 2160 tcagtaccat gttcctgcag gtctgatgac agtgaagaag gaggagttcc tggcccttaa 2220 gcaagggtca tcgtctgtca gtgagtatcg ggacaggttt ctgcaattgt ctcgctacgc 2280 tcccgaagat gtcaataccg acgccaagcg acaataccgt ttcctgagag gcttggttga 2340 ccctctgcag tatcagctga tgaatcacac cttcccgaca ctccagcacc tgattgacag 2400 agcaatcatg acagaaagga agcgcaagga gatggaagat cgtaagcgca agatcagtgg 2460 accccagcct ggaagcagca gccgcccccg tttctcaggc aatcaacctc agcagtttag 2520 gcagaaccag cgtccacctc agcagcatca gcagcgtcag cagcatcagc agtttcaaag 2580 gcagtatcct cagcatcagt accagaaccg tcagagcaat cagtcaggag gtcagtttca 2640 gaagcagaat cagcaagcac ctcgtcttcc tgccccagca aatcagcaga acagtcaggc 2700 agcaccagct caagttggaa acagggcatg tttccactgt ggagagcaag gccattgggt 2760 gatgcaatgt ccgaagaagg cagcccagca gcagtcaggc cccaatgccc cagcaaagca 2820 gaatgtgcct cagcctggag caggcaatcg ctctcagcag cgctataatc atggaagatt 2880 gaatcacttg gaagctgaag cagttcagga gacccccggc atgacagtag gtatgttccc 2940 agtcgattcc catattgcag aagtgttatt tgatactgga gcaacacatt ctttcattac 3000 tgcatcatgg gtagaagcac ataatcttcc aactactacc atgttaaccc ccattcaaat 3060 tgactcagcc ggtggtagaa ttcgagctga tagcatttgt ttaaatgtaa gtgtggaaat 3120 aagggggata gcgtttcccg ccaaccttat agtaatgggt actcagggaa tagatgtcat 3180 cctagggatg aattggttag ataagtatca ggcagttatc agttgtgata aaaggaccat 3240 caagttggtg tccccactag gagaggaagt ggtgaccgag ttagtcccgc ctgagccaaa 3300 gaaaggaagt tgttatcaga tggctgttga tagcagtgaa gcagacccaa ttgagagtat 3360 caaggttgtg tctgaattcc cagatgtgtt tccaaaggat ttaccgggta tgccaccaga 3420 gcggaaagtt gaatttgcta tagagcttct tcctggaacc gcccctatct ctaagagagc 3480 ttacagaata tctggaccag agttggatga acttaagaag caaattgatg agctgtcaga 3540 gaaaggttac atccggccaa gcacctcgcc ttgggccgcc cctgtcttgt ttgtggagaa 3600 gaaagatggt actaagagga tgtgtatcga ttatcgagct ttgaatgaag tcacgatcaa 3660 gaacaagtat cctttgccca gaatagaaga tctgttcgac cagttgagag gagccagtgt 3720 gttctccaag atcgatctga ggtcaggtta tcatcagctc aggatccgac cttcggacat 3780 tccgaagacg gcattcatta ccaagtatgg tttatatgag ttcacagtga tgtcttttgg 3840 tttgaccaat gcgccagcat tctttatgaa cttgatgaac agtgtattca tggattatct 3900 tgataagttc gtggtggtat tcattgatga cattctggtt tattctcaaa gtgaagaaga 3960 gcatgcagat catttgagga tggtgttgca gagattgcga gagcaccagt tgtatgcaaa 4020 gttgagcaag tgtgagttct ggatcagtga agtcctgttc ttgggtcaca taatcaacaa 4080 agaagtattg gctgtggatc cgaagaaagt ggcagacatt tctgaactgg aaagcaccaa 4140 cagatgctag aggaatcaag agcttcattg gaatggccgg atattatcgg cgattcattg 4200 aagggttttc gaagattgcg aagccaatga cagcgttgct aggcaacaag gttgagttca 4260 agtggaccca gaaatgccaa gaggcctttg aagcgctgaa agagaagttg acaacagcgc 4320 ctgtcctagt cttgcctgat gtgcacaagc ccttctcggt gtattgtgat gcttgttaca 4380 caggtttggg atgtgtgttg atgcaagagg gaagagttgt ggcttactcg tcccgacagc 4440 tgaaggttca tgagaagaac tacccaatcc atgatctaga gttggcagca gtggttcacg 4500 cactgaagac atggaggcac tatctgtatg gacagaaatg cgatgtttac acagatcata 4560 agagtctgaa gtacatattc actcagtcag aattgaacat gaggcagcga agatggttag 4620 aattgatcaa agactatgag ttggagattc attaccatcc aggcaaagca aacgtagtgg 4680 cagatgcttt gagcagaaag agtcaagtca atctgatggt tgctcgcccg atgccttatg 4740 agttggccaa ggagtttgac aggttgagtc tcggatttct gaacaattcg cgaggagtca 4800 cagttgaatt ggaacctacc ttggagcgcg aaatcaaaga agcgcagaaa aatgatgaga 4860 agatcagtga gattcggcga ttgattctag atggcaaagg caaagacttt cgagaagatg 4920 cagaaggcgt gatatggttc aaagaccgct tgtgtgttcc caatgtccag tctattcggg 4980 agttgattct taaggaagct catgagacag cctattcgat tcaccctggc agtgagaaga 5040 tgtatcagga tctgaagaag aaattctggt ggtacggaat gaaaagggaa atcgcagagc 5100 atgtggctat gtgcgatagt tgtcgaagaa ttaaggcaga acaccagaga ccagctggat 5160 tgttgcaacc gttgcagatc cctcagtgga aatgggatga aattggcatg gatttcatag 5220 tcggattgcc tcgcactcga gccggctacg attccatttg ggtagtagtg gaccgcttga 5280 ccaagtcagc ccacttcata cctgtcaaga ccaactacaa cagtgcagta ttgacagaat 5340 tgtatatgtc tcggatcgtt tgtcttcatg gggtgccaaa gaagatagtg tcagacagaa 5400 gaacgcaatt cacctctcat ttctggcagc agttgcatga agccttgggc acgcatctga 5460 atttcagttc agcttatcac ccgcagacag atggtcagac tgaaagaacc aatcaaattc 5520 ttgaaaatat gttgagagcc tgtgcgttgc aagatcaatc cggatgggac aagcgattgc 5580 tttatgaaga gttttcctat accacagtta tcaaggccag tttgagattg tcaccatttc 5640 agccgctata tgaaagaagt tgtagacttc cgtgcaaagg gatcagcttg aaaaaagcaa 5700 agtgtttggg caaacatttt gcttgaagcc ggagagaaca tcaagatggt ccgagagaat 5760 ctgaagatag cgcatcaaag gcagtgaagc tatgcagaca caagaagaag agagctgagt 5820 ttcgaagtcg gaagactttg tctatctgaa agtgtcaccg atcagaggag tcagaagatt 5880 cggagtgaaa ggcaagctag caccccgcta cattggtccg tatcagattc ttgcaagacg 5940 tggagaagtg gcttatcagc tcagtttgcc agagaatttg tctgctgtgc atgatgtctt 6000 tcatgtgtct cagttgaaga agtgcttgcg tatgccagaa gagcagttgc cagtgtaagg 6060 tcttgaagtc caggaggact tgacctacgt tgagaagcca gctcagatcc ttgaggttgc 6120 agatagagtc acccgaagga agaccgtcag gatgtgcaaa gtcagatgga gtcaccactc 6180 tgaggaagaa gcaacctggg agcgtgaaga tgatctgatg gccaagtacc cggagctctt 6240 tgctagccag ccctgaatct cgagggcgag attcttttaa gggggatagg tt 6292 // ID TREP97 repbase; DNA; GRAS; 952 BP. XX AC AF339051; XX DT 16-OCT-2002 (Rel. 7.09, Created) DT 16-OCT-2002 (Rel. 7.09, Last updated, Version 1) XX DE Triticum monococcum copia-type retrotransposon, TREP97. XX KW Copia; LTR Retrotransposon; Transposable Element; KW COPIA superfamily; LTR; retrotransposon; TREP97; KW fragment of reverse transcriptase. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RA Echenique V., Stamova B., Wolters P., Lazo G. and Dubcovsky J.; RT "Frequencies of Ty1-copia and Ty3-gypsy retroelements within the RT Triticeae EST databases."; RL Theor. Appl. Genet0-0 (2001)In press. XX RN [2] RA Dubcovsky J.; RT "Direct submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR GenBank; AF339051; Positions 1 712. XX SQ Sequence 952 BP; 263 A; 217 C; 211 G; 261 T; 0 other; acgcgtttgt ctcttgtgtg gaaccccaca agatttatga ggcgctagaa gatccggatt 60 ggctcaatgc catgcacgaa gaactcaaca acttcgagcg caacaaagtg tggagattgg 120 tgccaaggcc aacggggaac cacaatgtca ttggaaccaa gtggatattc aagaacaagc 180 aagatgccca tgggattatc attcgcaaca aggctcgttt ggtagcacaa ggctactccc 240 aagtcgaggg tatcgactac agtgaaacct ttgctcccgt tgctcgtctt gaatccattc 300 gcatgttgat tgcatatgct tctcatcata actttaagtt acaacaaatg gatgtgaaga 360 gtgcttttct taatggtccc attaatgaat tggtttacgt caagcaaccc cccgggttcg 420 aggatcccta ctttcccgat catgtgtatc aactcgataa ggcactctat ggccttaaac 480 aagccccacg tgcgtggtat gaccacctta ccgagttgtt acaagaccgt ggttttgaag 540 ttgggctaat cgaccccact ctttttacta agaaggtcaa aggggagttg tttgtgtgcc 600 aattatgttg atgatattat ctttggttct cctaacaaag ctttcaatga ggaatttgcc 660 gctctcatga cctcaaagtt cgagatgtcc tccatgggag agttgaagtt ttgttttttc 720 tagggttcga agtgaagcaa agaagagaag gaaccttcat caatcaatcc aaatacacac 780 aagacatgct caagagattc aagctaagtg acatcaagcc ggcctccact ccaatgccca 840 ccaagtgcca acttgactta gatcccaatg gtaaagtggt ggatcaaaag gtatatcgtt 900 ccatgattgg ttccttgctt tacctttgtg catctagacc ggacatcatg tt 952 // ID CINFUL1_ZM_I repbase; DNA; GRAS; 1179 BP. XX AC AF448416; XX DT 08-NOV-2002 (Rel. 4.3, Created) DT 08-NOV-2002 (Rel. 4.3, Last updated, Version 1) XX DE Zea mays retrotransposon CINFUL1_ZM_I, internal region, pol gene. XX KW LTR retrotransposon; POL gene; internal region; CINFUL1_ZM_I. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-1179 RA Fu H. and Dooner K.H.; RT "Intraspecific violation of genetic colinearity and its RT implications in maize."; RL Proc. Natl. Acad. Sci. U.S.A 99(14), 9573-9578 (2002). XX DR Genbank; AF448416; Positions 19780 20958. XX SQ Sequence 1179 BP; 273 A; 280 C; 267 G; 359 T; 0 other; tatgctacgc tgtcagcaag ttcgtccttc gataaatcga aagaccgtct tccagcttcg 60 ggaatccgat gcttttacct atctcccagc aaacggatat ttctttgtca tccgggagac 120 agtacaaaaa gtcttcttcg ccactgccat tgaacactaa cgcccccttc ggatatctca 180 atttttgggc atagtgttgc gcttctaaca tttcttcttg ggatagtacc tttcccgaag 240 catgacgaat aatgtagtca atacttttgt tcgacgcttc gggaccagga gcttcgattt 300 tttcagttgt aatccgctct attgattttt ccttagggtc agcacgctcc atctcggtgg 360 gcactgaagg cccagcttcg gtttcagcct gaattgttgt agcctcggct tcagcctgct 420 tagtatcagc ttcgagttgc gccttggaag cttcagctcc atctatgtta tggattgctt 480 ttgagtctgt ccaatttcct tcggcccttc tagcagcttc ctgacttcca tgaattgcaa 540 tgggcccttg gtccgaaggt atcttcatgc aaagataagc tggatgaaga attgcttcga 600 aggcattgag agtaccacga ccaatgattg cattgtaagg gtattccatg tcaacaatat 660 caaatacaac ttgttcagtc cttgtgttgt taatgaatcc gaaggttatt ggcattgtga 720 tttttccaag tgctacgatc tgccttcctc cgaagccaca aaggggatgt gtggcatcat 780 ggattttgtc ttcgggctct tgcatctgtc tgaaggcctt agcaaatatg atatcagctg 840 cgctgccagt atcaaccaaa acattatgaa ccaggaatcc tttgatcaca caagagataa 900 ccatagcatc gttgtgtggg taatccttga gttgaagatc ctcttgagag aaggtaattg 960 gaatgtgaga ccatcttgat ttgatgaagg gtccttgcac cccgacatgt tgtacccttc 1020 tctgtgcctc cttcttctgc ttcttgttgg ctcgctctga gcatgatccg cctgttatcg 1080 ggagtaccag cttcggagcc gaagcagctc tagcttgatt gttgaacgaa gccatcagct 1140 caaaaaagtg gaagtgagtt caccggaagt gggcgccaa 1179 // ID Caulimovirus-1_BD-I repbase; DNA; GRAS; 7585 BP. XX AC ADDN01000147; XX DT 09-MAR-2010 (Rel. 15.03, Created) DT 09-MAR-2010 (Rel. 15.03, Last updated, Version -1) XX DE LTR retrotransposon from the purple false brome: internal DE portion. XX KW Caulimoviridae; Integrated Virus; Caulimovirus-1_BD-I. XX OS Brachypodium distachyon OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Brachypodieae; Brachypodium. XX RN [1] RP 1-7585 RA Jurka J. and Kohany O.; RT "LTR retrotransposons from the purple false brome."; RL Repbase Reports 10(3), 247-247 (2010). XX DR Genome; ADDN01000147; Positions 189923 197507. XX CC Positions [4676-5188] - Reverse transcriptase CC LTRs are 96% similar to each other. XX FH Key Location/Qualifiers FT CDS join(3773..4783,4787..5905) FT /product="Caulimovirus-1_BD-I_1p" FT /translation="MITVKERKGDRLIQLKDAITSFGNKYIVRLPFKEVLG FT IRIPVKIILKRNISYKIILALLDTGCTKNIIHDKYFARCPEIVKTIDNDKA FT EVSTGMSGIQKIHNQLAYNIESYINGTKYIIDEITIRHLSVIKDDMILGLR FT CLQQSLQTTIIHEEGITFIPYQDNVPYISEIIRERKSIQNIEISNIDEEYS FT ANEDPLEICKEEELSNAIKEYHIENTCTECIGLQSFSPNWYKDTKTKKDID FT KIVQKLEDIQIIGEIPMKHWDKNSIVCKINIINPDYIIKSGPIETTPKDVE FT EFKMHIEELLKLKAIRESRSPHRSAAFIVRNHAEEVRRKSRMVINKRLNDN FT TVDDAFNIPNKQEWINRIEGSKYFSKFDLKAGFWQVKMAEESISWTAFTCP FT QGHYEWLVMLLGLKNVPALFQRKMQNNFNENQSFILVYVDDLLVFSKSYKE FT HIAHLEVFFRKVEQNGLILSKKKMEICKEKINFLGHEIEEGKIHLQEHIAK FT KILQFPDSMNDKKVLQQFLGIVNYARNYIDNLAKLAGPLYAKLRKNGQRYF FT NSEDIKLVKAIKEKVKNLKPLELPLEDCYFIIETDASKVGWGAILKQKPNQ FT YSPKAEEKICRYASESYKLKIVNNIDREILAVVHAINAFRLYLGFKEFTVR FT TNCEAICRYYNQINSKKSSTRRWVLFEDIITGNGYKVVFEHIKGKDNCLPD FT IFSRSSILQE" XX SQ Sequence 7585 BP; 3169 A; 1009 C; 1428 G; 1979 T; 0 other; tatttgtggt atcagagcca gtggttaatc attgaaagat taaagtatct agacttagaa 60 gttagtgcag gtaaaattat atatactaaa gaaaatattg acataaggtg cagaataaat 120 ccatccgaag aacatatttg gcatacgact catagtcagt taaatacagt tgttgatctg 180 atatataact tctttatatc ttggggaaaa aggtaagata atttagacca aaaatttgat 240 agcatattta aagaatacca aaaacttgca gaaaaatact ttagtttgaa taataaaatt 300 gatatagctc tacataagct agaagaagcc aaaacaaaac aaaatatagt ttgtaagaat 360 aacgattaca ctaaagaaga agtgttgtcc attggaaaaa gtatagggca ctgtttaaat 420 aaaaataaac caagcgctga aacaaagcaa gagatatctg aaattaaaag actagttcaa 480 gaagtaaaaa ccttgatcct ctcgtagttt gcatgaacga atatagcgaa gcattagaag 540 aagtagcaaa atatttaacg ccgccagttg gcttttctga ccacgattct ccaaaggaag 600 attcaaaaat aataatcaga caaaataata caatccttca gtcattaatt cagattttag 660 ataaaataaa cagcgatcaa agtaacaaag atattgtgtt agcatcatct ggaataattg 720 catcactaag gaatattaat tcggaaaaat ggacttatct aaaagcccca ttagaagaga 780 cagaaacctc cagtcaataa ggcaagattc aaggcctcta ataatgatgc atagaatgtc 840 atgcagcaag gctgatgaca ttgatagttt agaagaagtt atagacttag aaagagattt 900 ggaaaggtat caaaaggata caccgagaaa aataaagcca cagcaggtat accacatggg 960 attgtttaaa ggaagaagtg gattgtatag aatatccaga gaagtagaat taagtgtgtt 1020 aacacatcca gttaaattaa gaattgtgag caagaatatt gaaaatgaac taaaatattg 1080 tgggtataaa tatattcatc aaggtatgta tatcatagga gtcaaaggaa tgacaagaaa 1140 gaaattagga gcaaaggtat taataacact attagacaaa agatggggat tagtagataa 1200 agcttcatta ggcttcatgg aaggagacat gaatgaaaat agattaataa cttatatagc 1260 ctcagattta atgatgcccg tgaaggaatt tattgataaa atgagttttg ggttccagac 1320 taaaggatat aaagatacaa atttattagt aagtatagaa tttataggaa gactaactac 1380 aaaagcagct ctaaatataa agtaaatgta gatgatgtaa ttgaaagcat gcaatcaaaa 1440 ggtataaaat tcatgagtcc tcttaaaata agctctgaag aaagagcagg agaagaatgg 1500 aaaataagtg agctaataga gaagaaagaa ttaaagcaac ctaataacta cataagctat 1560 caaaattgtg aaggaactag tagcattaga ttcacaaatt ttaaaaccgc aaccatggat 1620 gatactgaat cttttgtttc tgaatcagag tttagtgaaa ataaaaatag tggtgcatct 1680 aaatacatgg aaaaagcaga tttagacaat gaaataattc attacgaagg aaaattgaaa 1740 catatagaat gggaatataa taattttatg acaaaagatt ggcctaagat aagagaaaag 1800 gaattgtttt tcattagaga gattgcaaga cttaaaagat taaaaaaatg agaaaaagca 1860 tgccattagt agttcgatca tattagataa caatataacg acacaagaaa ataaggttgg 1920 aaatagtaag aacaataata cggtccagag ccacaaaaat aaagatgtag atgaagagga 1980 gtagtgggac ataaataaca agttattaac agaaagttat gaagaagaag atgaaaattt 2040 tgatgggtct gaggaatata gtgattttat aaactcccta gatgaggtgg gtttacataa 2100 tttagaaaat tcaatgaaag ctatggaagt agaaatgact agtaaaagaa gaagagtata 2160 tggtgatagt tcagtaaaga gtgaaggagc aagagagaga cctaccaggg cagctggaaa 2220 atggccccca gaaaaagatg acttccaacc aacttctatt ctcggacaat acagatatat 2280 gggattttga aaaccccgta caatttcaaa attctaggaa tgatggggca atattaaatc 2340 tagcagccca tgacccggta gattagccta atataattag catatggaaa ggtttaatag 2400 ttcagaaata tatacaaaat cagcataata taggtaataa ggtggaagat atgataacat 2460 atcttgaaac ttttctagga gaatctgcaa agattttatg ggagcaatgg gtagagtcat 2520 atcctaatca atatgaagaa ttaaaaaggg ctggaagtaa tccccataac tttgccaata 2580 ttatatcaag cataatcata gcagaagatc cagatatggg acataccaca ttgcataatg 2640 agagattgag agaaataaaa aaattaacgc taactagttg taaaggtata aaagaatttt 2700 ctcagcatta tttatacaat gctaccactg ctaagcaagg atataataaa ggggtagttg 2760 aaagatactt caataaatta cctgatcctt taggatctat aatatttgaa gagtataaga 2820 aagaatcaaa gggaaatgtt gcaaatatat ctcaggccat aacatttgta tttaaacaac 2880 taagaaaggt atgtacgaat atacaagctc aaagatctac gaaaaaatca gactacaatt 2940 tctgcaataa tattgttcaa ataccgctaa catatggaga aaataggcat aggaataaaa 3000 aatattacaa accacagagg agagataata ggaactttag gacaaagaaa agatatttct 3060 taagaaggtc tgataataga gctccttatc tacataagag aaatgtaaga agatacgatc 3120 ctagaaaatc ttatgataag acatgtagat gttttatatg taattcacca tatcatctaa 3180 gtaaaacatg tcctaataaa gatcaaaaaa ggtactctag taaatatgaa gagcaagaaa 3240 gagtgttaat tatagatagc gttaacgaga atatcctagt atgtgatgag gaaataaaag 3300 atgatgagta gatatattca atcatagaaa cagatgaagt agaaaatgag actttagaag 3360 atgaatcaag cgaagatgaa ttagacctaa tagacgattt agcaggatta aaaattgaaa 3420 tgatgaatca agtagattgt gaacacgatt ggattagagg taaaggtgat tataacatga 3480 aatgtgcctt ttgtatatat tatccaagcc aagagaatag gtccacatgc agcttatgct 3540 taagacaagc gtgtgcatct tgtttaaagg ctagaaatca aagttggaga cgggaaatag 3600 aatgtgaacc agaagaacga atactatcta gtagagttag aaacttagag aacagaataa 3660 ataaactaga agcagaacta gaagaaataa atataattta gaaaataaaa atattattaa 3720 taatcaagat caagaaggta acattataaa aaatacagca ttaaaagagc aaatgatcac 3780 agtaaaagaa agaaaagggg acaggttaat ccagctaaaa gatgctatta ctagttttgg 3840 aaacaaatac atcgtacgtt taccatttaa ggaagtgtta ggaataagaa ttccagtcaa 3900 aataatatta aaacgaaata tttcctataa aataatatta gcactattag acacagggtg 3960 cacaaagaac atcattcatg acaagtattt tgcgagatgc cctgaaatag ttaaaactat 4020 agacaatgat aaagctgaag tatccacagg catgtcagga atacaaaaga ttcacaatca 4080 attggcctat aatattgaat cttacataaa tggaacaaaa tatattatag atgaaattac 4140 aatcagacat ttgtcagtaa taaaggatga catgatactg ggtttaagat gtttacaaca 4200 atccttacaa accactatta tacatgaaga aggaattaca ttcatcccat accaagataa 4260 cgttccatac atatctgaga ttataagaga gagaaaatcc atacaaaata tagaaatatc 4320 taatatagat gaagaatata gtgccaatga agaccctctt gaaatctgca aagaagaaga 4380 gcttagtaat gccataaaag aataccatat agaaaataca tgtacagaat gcataggttt 4440 acaatcattc tcaccaaatt ggtataaaga tacaaaaacc aagaaagata tagacaaaat 4500 agtgcaaaaa ttagaagaca tacaaatcat tggagaaata ccaatgaaac attgggataa 4560 gaactccata gtctgcaaga taaatattat caaccctgat tacataatca agtcaggacc 4620 aatagaaact actcctaagg atgtagaaga gtttaaaatg catatcgaag agttattaaa 4680 attaaaagct attagggaaa gcagaagtcc tcatcgatct gccgccttta tagttagaaa 4740 tcatgctgaa gaagtcagga gaaaatctag aatggttata aattaaaaaa gacttaatga 4800 taatacggta gatgatgcat tcaatattcc aaataagcaa gaatggatta atagaataga 4860 aggaagcaaa tatttttcta agtttgacct aaaggccggg ttttggcaag taaaaatggc 4920 cgaggaatct atttcttgga cagcttttac atgtcctcag ggtcattatg aatggctagt 4980 tatgctttta ggattaaaaa atgtgcccgc tttatttcaa agaaagatgc aaaataattt 5040 taatgaaaat caatcattta tattagttta tgtagatgat ttactggtct tctcaaaatc 5100 ttacaaggag catattgctc accttgaagt cttttttagg aaggtagaac aaaatgggct 5160 aatattatct aaaaagaaaa tggagatttg taaagagaaa atcaattttc ttggacacga 5220 aatagaagaa ggaaaaatac atctgcaaga gcatattgca aagaaaattt tacaatttcc 5280 tgattctatg aatgataaaa aggttctaca acaattccta gggattgtaa actatgcaag 5340 aaattatata gataatctag caaaactagc tggaccttta tatgctaaat taagaaagaa 5400 tggccaaagg tattttaatt ctgaagacat aaagttagtc aaggccataa aagaaaaggt 5460 caaaaatttg aaacctttag aattgccatt agaagattgt tactttataa tcgaaaccga 5520 tgcatctaaa gtaggttggg gtgctatatt aaagcaaaaa cctaatcagt actctccaaa 5580 ggcagaagaa aagatatgta ggtatgcctc agaaagttat aaattaaaaa tagtaaataa 5640 tattgataga gaaatcctcg cggtagtcca tgcaataaac gcgtttaggc tatacttggg 5700 atttaaagaa tttacagtac gcactaattg tgaagcaata tgtagatact ataatcaaat 5760 caatagtaag aaaagttcta ctagaagatg ggttttattt gaagatatca taactggaaa 5820 tggatataaa gttgtttttg agcatattaa gggaaaagat aattgtttac ctgacatatt 5880 ctcccgttca tcaatcttgc aggaatgaag cgtaggttgc ttcccaatgg ggtggaagta 5940 tttaccttcg gaaataaaaa cacactgaaa atatttcccc cgaatacatt taaattcaaa 6000 cctaagcgac atattgccct cgatgaaatt caagaatgca tacttgacaa tttctggttt 6060 caatataata ataaaagaga agaaaaaggc tatatgctat caattctgaa tagtctagcc 6120 gaatatttca atatgatgaa caagaactta ccaatatcag caaatattgc agtgcaagaa 6180 tataagccat tatatgtact atttgatgga atcaaacctg gaatatatat gacttttgaa 6240 gaaataataa aagaaaagct agacgcaagg aaaaggaaaa aggatattac atggaagaaa 6300 tatttagatg tcaatgaagc cttgaataga gcaagaagta tgacaggaga aaattactac 6360 atagaaccaa aagtcaaaaa atatatccaa aagttcaaag gagtagataa ggatattcct 6420 ttttcatcaa atataaagaa tataaaggaa gaagcattaa ttttaaaaaa agaaaaggaa 6480 gaagaatctc ctaaatatag cacatacaaa gactgcttag taaaaggagt ggatcctctg 6540 gattctgaat atatagacat gaagataaac gaaacattag aagacacttc aaagttatgg 6600 aaagaagagt aaaaagaaga aattttataa caattacgac ttgaatttac gcaaaaattt 6660 gaagaaataa agaaagagta tgacctaaaa tatgacctga ctctttcaaa atacgaattc 6720 aatctttcag atgatgatca catggatatt gcagaccatg ggcagaaacc agaattttaa 6780 ttgatattac tatcaattat tcgggcgggg aggacatata caccacctcc gaacatatac 6840 acctataccc gaatagttga tagaatataa tttgaatatg attgaaaact gaaaataata 6900 ataattatta ttattaaaaa taaataaatt tatgaaaaat aataaatctt aagatccatc 6960 gttagcatgt attaggcata taagacccat catcagcata caagatcaca aatgcatgag 7020 atcttatgat ttatggtgtg cagacgaaga ataaccaagg aagcagacaa taaggctgca 7080 gtgtgtcatg gacactatca ttaaagcgca agactactct caggatgaag gaaaccacgt 7140 tcctatgcaa ccaaagagtg aagtggcagc caaaaaacct catcttcttc atgcatgcat 7200 gcactcaaga ggctataaag aaggcctagg acctataaag aagatgcatc atgaccaaga 7260 agaaaggaga agtaaataat gcatgagagc actatttgag ccagccatat tgcctataaa 7320 aggagcctct tgctgcaacg gaggacacac aacatcgttg agaacacaag ccttcagtag 7380 cagagagagt gagcagctag cgagcaaact atctgctctc tagtagtagt agtagtggta 7440 gtagtggtag tcgtggtagt cgtggtagtg tagtcgttgt ggtagtcgta gtcgtagtcg 7500 tagtcgtaat ggtagtcgta gtggtagcag cggcagcggc agcggacagc aggcagcaag 7560 cagcaggagt agtagcagta ggcaa 7585 // ID Gypsy2-SB_I repbase; DNA; GRAS; 11171 BP. XX AC AF369906; XX DT 20-SEP-2007 (Rel. 12.09, Created) DT 20-SEP-2007 (Rel. 12.09, Last updated, Version 1) XX DE LTR retrotransposon from sorghum: internal portion. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW internal portion; Gypsy2-SB; Gypsy2-SB_LTR; Gypsy2-SB_I. XX OS Sorghum bicolor OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Sorghum. XX RN [1] RP 1-11171 RA Kohany O. and Jurka J.; RT "LTR retrotransposon from sorghum."; RL Repbase Reports 7(9), 975-975 (2007). XX DR Genome; AF369906; Positions 54488 65658. XX CC Positions [5510-5998] - Integrase core CC 'AGTAC' target site duplication CC LTRs are 100% similar to each other. XX FH Key Location/Qualifiers FT CDS join(587..3190,3194..6376) FT /product="Gypsy2-SB_I_1p" FT /translation="MVTIRELRDGQVSSTNSSTGSVPTEVVNTEDEDYDLD FT FPSHPPGFDRFPIFPPRRGDIVFNVSADEPAVDGETDDQRQLREQRNAERA FT RRRADEQQQTPPGNLNDAFDMVGDQPVYKTPSANVAVAMANLDRLPDTPEC FT QGVRTSIRAHLIAAMGQTAALLKRVQDASYTEAASDQTHRSRASPSRRRRS FT RSPDNRRGDSRRDDGGRDADGRRQQDRVRGQEEEDQHRDLRHNIPPKDARD FT RINRRAAERAVHENLRRIEYDATHGPPGLRQFSSHLRQVVWPRNFKLEKLK FT KYDGKENPENWITLYEIAVRSAAGDEHVMANYFPVVLDQAGHQWLLGLPED FT SFDSWEELRQAFIDNFIATCEQPGNKYDLERIRDRKNEPLRDYIRRFSDMR FT LKIPRISHDEAISAFIKGLRFHEALRNKLLRKRPSTVAELLATAKNYADAD FT DAEKLIRDDARGTDQPSRRDDGRGRYDNRNHRRSDNRDHREGWDRRRDSRD FT DFRGKRPREYDHEVNTVKRPNGRRDYQDDYNKTLKGPCQLHPKSNHTMEEC FT RVLKSIYTRRAAQEDTAKKSSKRDGHDHEDEDEDQDRDPRHQYVSPTDVVH FT SIFGGKVSTESKRERKLLKRACLNIDSTDGLIADPKFPAWSHREIAFSRKD FT QWATIPEPGRFPLILDPCINSIRFERVLVDGGSSIDILFRNSLPALKISPA FT QLKPYDAQFWGVLPGQSSVPLGQITLPVQFGTPDHFRTEFINFVVADFDGT FT YHAILGRPSLTKFMAVPHYSYLVLKMPTEKGVLTVRGNVYTAYTCEEESFK FT ITEAIDLSIRMAETATQAAQLPPDQLRLPEQETARKNSKSKEYKEVQLVEG FT NPEKTALIGANLDPKEDALVRFLKDNVSVFAWKPADMPGVPRNLIEHSLNV FT SKTARPIKQKLRRFARDKKEAIRTEITRLLAAGFIKEVYHPDWLANPVLVR FT KKNNEWRMCVDYTDLNKHCPKDPFGLPRIDEVVDSTAGCELLSFLDCYSGY FT HQISLKEEDQIKTSFITPFGAYCYTTMSFGLKNAGATYQRAIQQCLHDEIR FT DDLVEAYVDDVVVKTRDASTLIDNLDRTFKALNRYKWKLNPKKCIFGVPSG FT LLLGNVVSRDGIRPNPSKVKAVLDMRPPKNVKDIQKLTGCMAALSRFISRL FT GEKGLPFFKLLKASEKFSWTEEANAAFTQLKIFLTSPPVLTAPQPNEDLLL FT YIAATDRVVSTAIVVERDEPGHVFKVQRPVYFVSEVLNESKARYPQIQKLI FT YAILITSRKLKHYFDGHRVLVTTSFPLGDILRNKDANGRIVKWAMELCPFS FT LEFQSRTTVKSQALVDFIAEWTDLNEPSVPDVSDHWSMFFDGSLNINGAGA FT GILFVSPNKDKLRYVLRILFPASNNVAEYEACLHGIRLAVELGVKRLYVYG FT DSALVINQLNKEWDATHEKMDLYCKEIRKWETHFYGIEYIHVVRDKNQAAD FT ALSKLGSSRAQIPRGIFVQDIHEPSVSPPLVDKQPTEAMLIDDATPATGGR FT DWRTPFIKYISDGTGYQDKTENERLIRRSKNYILVDGKLMRKNASSEVLLK FT CIPQDDGIKLLEDIHAGSCGNHAASRTLVGKAFRAGFYWPTAVGDAEKLVR FT HCEGCQFFAKRTHVPAHEIQTIPSSWPFACWGLDMIGPFKPAPGNFKFVFV FT LIDKFSKWIEYMPLVKATSEKAVEFLNQIIHRFGIPNSIITDLGTQFTGTT FT FWDFCDDRGIVIKYVSVAHPRANGQVERANGMIVDALKKRLYTENDRAPGR FT WMRELPAVVWGLRTQTSRNTGVSPYFMVYGAEAVLPADIHFRSPRIEHYDE FT ATADNARELEVNCMEENRLVSCLRTAKYLAAVRRYYNRNVKDRSFVVGDLV FT LRWKTNQEGMHKLSTPWEGPFVVTKVTRPTSYRLAYPDGTRVPNSWHIDKL FT RRFYP" XX SQ Sequence 11171 BP; 2721 A; 3377 C; 2859 G; 2214 T; 0 other; gtggcgcgcc aggtaggggg tgtgcgtgca acttttccgg cgaacaagat ggtcacgatc 60 ccagcttccg cgaccgtgcc cgaaggcctc acgttcaccg tcggccaaat cacgtggacg 120 acgcgcagcg gcggtttcgc gaccacggtt ccgaaagaag atccagatcc aatctgagac 180 cacgtcgtct ccgaccacgc gcgtgacgac accaagctcc cgaccaccgc tcccgctcta 240 caagggaagg gagatcgact gctcggacct cctccaagcg ctcgatcgcg ctgactccaa 300 gctattcgaa gtctcccaac taatagatgg agttctgcgc cggcccgacc aagccgctcg 360 agcggattct tcgaaattcc gccggccaac tcgtgtcacc acacacgaac ggctgggaac 420 atccctgacg ataacctcaa ccccctcagg acgatccgtc gagctcaaaa aggaagacta 480 tccttgcggc ctgaacaact cggcctctgt ttattcacgg catgtccaat ccgttttcag 540 caaagcgggc tggtcgccga caaggaacaa tcgccaccat gtcaacatgg tgaccatccg 600 agagctacgg gacggccagg tttccagcac caactcaagc accggctccg tccccaccga 660 ggttgtgaac accgaagacg aggactatga cctggatttt ccttcacacc ctccgggttt 720 cgaccgattc ccgatattcc ccccccggcg aggggatatt gtattcaatg tcagcgccga 780 cgaaccagcc gttgacggag aaacagacga ccagaggcaa ctccgtgaac agcgtaacgc 840 cgagcgcgcc cgacggcgtg cagacgagca acaacagacg ccgccaggca acctcaacga 900 tgccttcgac atggtcgggg accagccggt ctacaaaacg ccaagcgcca acgtggctgt 960 cgccatggcc aatctggatc ggcttcctga cacccccgaa tgccagggag tccggaccag 1020 tatccgagca cacctgatcg ccgcaatggg acagacagcc gctctgctca agagagtcca 1080 ggacgcctct tatacggaag ccgcctccga ccagactcat cgtagccggg cctcacccag 1140 caggcgtcgc cgcagccgct cccccgacaa ccgtcgaggg gactcacggc gcgatgatgg 1200 tggtcgggac gccgatggcc gccgccagca ggaccgcgta cgcggccaag aagaagaaga 1260 tcaacacagg gatctccgcc acaacatccc ccccaaagat gcccgggacc gcatcaacag 1320 gcgcgccgca gaaagagcag tccatgagaa cctgcgccgc atcgagtacg acgcgaccca 1380 cggtcctccg ggcctaaggc agttctcttc acacctccgc caagtcgtgt ggccccgcaa 1440 tttcaagctc gaaaaactta aaaaatacga cggcaaggaa aatccagaga actggatcac 1500 tctctacgaa atcgccgtcc gatcagcggc aggagatgag cacgtcatgg ctaattactt 1560 ccccgtagtc ctcgaccagg ctggtcatca gtggcttctc ggcttgcccg aggactcctt 1620 cgactcttgg gaggagctgc gtcaggcttt catcgacaac ttcatcgcca catgcgagca 1680 gcccggaaac aagtatgacc ttgaaaggat aagagacagg aagaatgaac ctctgcgcga 1740 ttacatccga cgattctcgg atatgcgtct caaaatcccg aggatttctc atgacgaggc 1800 catatcagcc tttatcaagg gtttgcgttt ccatgaagcg ctgaggaaca agctattgcg 1860 taagcgccca tcaacggtag cggagctcct cgccacggct aaaaattacg ccgatgctga 1920 tgacgcagaa aaactaatcc gagacgatgc gagaggcacc gaccagccct cccggcgaga 1980 cgacggtcgt ggtcgctacg acaacagaaa tcatcgccgc tccgacaacc gcgatcaccg 2040 agagggttgg gatcggcggc gcgacagccg cgacgacttc agaggaaagc gccctcgcga 2100 gtacgaccac gaagtaaaca cggtcaaacg tcccaatgga cgacgggact accaagacga 2160 ctacaacaaa acgttgaagg gaccgtgcca gctacacccg aagtctaacc ataccatgga 2220 agagtgccgc gtcctcaaaa gtatctatac acggcgggcc gcccaagaag acaccgccaa 2280 gaaaagcagc aaacgcgacg ggcacgacca cgaagatgag gatgaggacc aagacaggga 2340 cccccgacac caatatgtca gccctaccga cgtggttcac tccattttcg ggggcaaggt 2400 ctccactgag tccaagcgag aaagaaaact gttaaagaga gcctgcctca acatagacag 2460 cacggacggg ctgatcgcag atccgaaatt tcccgcctgg tcccacaggg agatcgcgtt 2520 cagcaggaag gaccagtggg ccactatccc agagccgggt cgtttcccac tgattcttga 2580 tccctgcatc aatagcatca gattcgagcg cgtgctcgtg gacgggggaa gctccatcga 2640 catcctcttc cgcaacagcc tgcccgccct caagatatca ccggcgcaac taaaacctta 2700 cgacgcccaa ttctgggggg ttttgccagg tcaaagttcg gtgcccctcg gacagataac 2760 attgcctgtc caattcggca cacccgatca cttccggacg gagttcatca acttcgtagt 2820 cgcggacttc gacgggacct accacgccat actgggccgc ccatcactga caaagttcat 2880 ggcagtcccg cactactcat acctggtgct taagatgccc acggagaagg gcgtcctgac 2940 cgtcagaggc aacgtctata ctgcgtacac ctgcgaagaa gaaagtttca agatcaccga 3000 ggcaattgac ctctcaatcc gcatggcgga aacagcaacc caagccgcac agctgccccc 3060 cgaccagctc cgattacccg agcaagagac agccagaaag aattcgaaat ccaaggagta 3120 caaagaagtg cagctggtcg aaggtaaccc cgagaagaca gccctcatcg gggctaacct 3180 ggatccaaaa taggaagacg cgctcgtcag gtttctaaag gacaacgtga gcgttttcgc 3240 atggaaaccc gcagacatgc ccggtgtccc acgaaacctg atcgagcact ccttaaacgt 3300 ctcgaagacc gcaagaccaa tcaagcaaaa actacgacgg ttcgctcgtg acaaaaagga 3360 ggctattagg acagagataa cacggcttct agcagccgga ttcataaaag aggtgtatca 3420 tcccgattgg ctcgccaatc cggttcttgt acgcaaaaag aataatgaat ggagaatgtg 3480 cgttgattac accgatctca acaagcactg tcctaaagat ccttttggtc ttcctcgcat 3540 cgacgaggtg gtcgactcaa cggccggatg cgaactcctc tcctttctag attgctactc 3600 tggttatcac cagatctcgt taaaggaaga agatcagatc aaaacatcct tcatcacacc 3660 cttcggcgca tattgttaca ctaccatgtc tttcggactt aaaaacgccg gggccactta 3720 tcaaagggcc atccagcaat gcctccacga cgagattcgc gatgacctcg tcgaggccta 3780 cgtggacgac gtggtcgtaa aaacaaggga cgcgagcacc ctgatcgaca acttagaccg 3840 aaccttcaag gcactcaata ggtacaagtg gaagctcaac cccaagaaat gcattttcgg 3900 cgttccctcc ggtctactgc tcggcaacgt cgtcagtcgc gacggcatac gaccaaaccc 3960 ttcaaaagtc aaagccgtac tcgacatgcg accaccgaag aacgtcaagg acattcagaa 4020 gctaaccgga tgcatggccg ccctcagccg tttcatttca aggctgggag aaaaaggcct 4080 ccctttcttc aaactattga aagcgtcaga aaaattctcc tggaccgaag aagccaacgc 4140 cgcgttcact cagcttaaga tcttcctcac ttcaccgcct gtcctcacag cgcctcagcc 4200 taatgaagac ctgctccttt acattgctgc aaccgacagg gttgtttcca cggcaatagt 4260 ggtcgagcga gatgaaccag gtcacgtctt caaggtccag agacccgttt acttcgtaag 4320 cgaagtttta aacgaatcca aggccaggta cccacaaata cagaagctta tatacgccat 4380 cctgataacg tcaagaaaac tgaagcatta cttcgacggc catcgagtcc tggtgacaac 4440 cagctttcct ctcggtgaca tcctgcgcaa taaagacgcc aatggcagaa tcgtgaaatg 4500 ggcaatggag ttatgtccat tttccctgga gttccagagt cgcaccactg tcaagtccca 4560 agccctggtc gatttcattg ccgaatggac ggatctcaac gaaccttccg ttcccgatgt 4620 ctcagaccac tggtctatgt tcttcgatgg gtccttgaac atcaacggtg caggcgctgg 4680 gatactgttc gtatcaccca acaaggacaa actccgctac gtccttagga tccttttccc 4740 ggcgtcaaac aacgtcgccg aatacgaagc atgcttacac ggcatacgac tagccgttga 4800 actgggggtc aagcgcctct atgtctacgg cgactctgcc ttggtcatca accagctcaa 4860 caaggagtgg gacgcaaccc acgagaagat ggatctctac tgcaaagaaa ttcgcaaatg 4920 ggaaactcac ttctatggca tagagtacat ccacgtggtc cgggacaaga accaagcagc 4980 agatgcgttg tcaaagttag gctcatctcg ggcccagatc ccgcggggta tttttgtcca 5040 ggacatccat gagccaagcg taagccctcc cctggtcgac aagcaaccca ccgaggcaat 5100 gctcatagat gacgccactc cggcaaccgg tgggcgtgac tggcgcaccc cgttcatcaa 5160 atacatatca gacggaacag gctatcagga caaaacagag aacgagcgcc tcatccgacg 5220 gtcaaagaac tacatcctgg tcgacggaaa actcatgcgg aaaaacgcaa gctccgaagt 5280 actgctcaag tgcatacccc aagacgatgg tatcaagctc ttggaagaca tacacgctgg 5340 atcctgcggc aaccacgccg catctagaac gctggtcgga aaggctttcc gagcaggttt 5400 ttattggcca accgcggtcg gcgacgcaga aaaactggtt cggcattgcg aaggatgtca 5460 gtttttcgct aagaggaccc acgtacccgc ccatgaaatt cagactatcc cgtcgtcttg 5520 gccctttgct tgctgggggc ttgacatgat cggaccattt aaaccagccc cgggcaactt 5580 caagtttgtc ttcgtgctaa tcgacaagtt ctccaagtgg atcgaataca tgcccttggt 5640 caaggcaacc tccgagaagg ccgtggagtt tctcaatcaa atcatacaca gattcggcat 5700 cccgaacagc ataatcaccg acctgggcac tcagtttact ggcaccactt tttgggattt 5760 ctgcgatgac agaggcatag tcataaaata tgtgtcagta gcacacccac gtgctaacgg 5820 tcaagtcgaa cgtgctaatg gaatgatcgt tgatgcccta aagaagaggc tgtacaccga 5880 aaacgacaga gcacccggtc gatggatgag agaattgccg gcagtagtct ggggcctccg 5940 aacccagacc agtcgaaaca caggggtgtc tccctacttc atggtatacg gtgcagaggc 6000 ggtcctgccg gccgacatac acttcagatc tcctagaatc gagcactacg acgaggcgac 6060 tgccgacaac gccagggaac tcgaagtcaa ttgcatggag gaaaatcgtt tagtttcatg 6120 tctccgaaca gcaaaatatc tcgcggcagt caggcgatac tacaacagga acgtcaagga 6180 ccgttccttt gtggtcggcg atctggtgct tcgatggaaa acgaaccagg agggaatgca 6240 caagttatcc actccctggg aaggaccctt cgtggtgacc aaggtcacac gacctacgtc 6300 ctacagattg gcatacccag acggaacacg agtgcctaac tcttggcaca tcgacaaact 6360 gcgacgattc tatccataac gttttaatgg ctttcttttg taagtatctt ataatttttg 6420 ataataagat tctatatttc tcgcctatac cttgtcgtac gcagcaccca gcaaaactcc 6480 tgcaatggat gctcttggcg acaaccaaga caaatacggt gacacgtcac tcagacattc 6540 ttacagcgct caaaacaaca gtcatgacaa aaaagaaaac tttattacaa actttacata 6600 caaagtttac aataaacacc ctgacgggca gatactagtc tattcctaca gactacttta 6660 ttggcctagc tgctcgggct gatcacccgc ctggccttgc tgcccggacg aaggggtcgg 6720 ggccaccggc gcctggctgg tcgagaccgc aggcgtcgac cgcccatctc cagcaacgga 6780 cgcgcccgac aactccctgg ccgacctatc tgagctcggc tggtctggag gagtggccgt 6840 tccgcacagg ttgatgtcgc cgatcaccgt cgacgacaaa tccagcagac taccccgaag 6900 ttcgtccgct tcctgtgggc cgacttcctt cgggtacccc ttctccagcc tgctcaagtc 6960 aaccaggggg tagtgggcgc gcaccatgct gaggacgtgc gcgccggcaa actctccggc 7020 gtccttcaca aactgctgga gccagtccca cgcccgttgc gccttcccga ctggggtcaa 7080 ctgcggcgcg cggggctggc tctccgggag ctcgggactg atcaggtcca ggaccgggga 7140 cactcccttc cagatcttgc aacagttggc cttccaggag tcccggtccc tgatcagctc 7200 atccaggtgc ttcttggtgt tcaccttgag cactgcaaac gaaatgaaac gttaccagac 7260 aagcacaggg caggcagcaa tcaacaaggc ggcactcatt accagctaac tcccggtctt 7320 ttcggcccaa ctcctcttcc gctcgccgcc cggactcctg tgcactggcg agctgttggc 7380 cgagctgctc cttctcttgt tggaggctcg ccacctcctc ctccaagtct gcgtgaatcg 7440 attaactggt cagcaaagca aactatacaa gtatgtgaaa ctgctcggag cgtgtgacta 7500 accttcctgc agccggtact ggtcggccag gcgacgagag aggtcgagac gacgctcctt 7560 ttcggcgctc atctcgacca ccttctctcc gacctccgcc cgcaaccggt ctacctccgc 7620 ggcaagggcc ttgttctcgg ccatgacgcc ttctatctgg tcaaagcacc gtttccggta 7680 cttcgccgtt ttcataacgt cctacaaagc aagcatataa gaatgcgcag aagacaaggc 7740 aaaagatcgc gcggcagctc aaaacgccgc ttaccttgac ctcgtcgaca aggcgcttag 7800 ccgcgcgctc caccctggcg gcctcttcgg actcggcgag ctcctcatga ccgataaagt 7860 gatccccgcg ttggcgccac acatacacgt gttggcggcc atcacgggga cgaccctcga 7920 tctcttctac ctcgtcgtcg gaggccgccc tggtttcctc ctcctgggct gcgtcacccc 7980 cggtggtggt cccaggcgcc accgtccctt ggaccagacc tggggagccc gcagccggag 8040 aggctcctgc tcggggcggc agggggactt cactcccccc ggcaggagga gcggtcggag 8100 actttccctt ctccgaggag tcagttgggg gagcctcccc agccctggtc gggctgcttg 8160 ttgtagtagg cgccgcgctc gggagcccct ccgtgctccc aggcgcgact gcagctgttg 8220 gctgctctgt ggtctggggg gccgcatccc cagaaccgcg ggcaggctcg cccgttccct 8280 ggccagcagt ttggccaggg tcgacatccg atgccgcact acaggaacaa aagttaaaaa 8340 aaaaagaaaa aaaaaagaga gaggagtcca aaatacgtaa gttgaacact tacaggtctg 8400 accgccgatg ggtcgcggtg aacctcctcc tcgcccggcc ggtcggcgcc tgtgccccca 8460 cctcggcaac ttgcggggca gccgcgtcgc tggccactcg atcagtggcg accggcgcag 8520 cgtttgggcg gtcccgaggc cgtcggacca gcgacggcgc agcctcctcg tcgtcctcgt 8580 cgtcgtcgac gatccgcacg agccgacgac gcttcggcgc ttggctgctc tccgccggta 8640 ggtctgccgg cagctccggc gttggcaagg gattcgccgg caatggcctt ttccccgcta 8700 ccctctctcg gaggtcagga cggggcgggc tcggtcttct tccgacggga cctctcccac 8760 aggatcttcc atccccggtg ccagtgatgc gtacactacg caccggtcga catcaccgac 8820 ctgcaaaagc aacagaggtg agccaactgc agacgacata agaatgatca aacgggctat 8880 gctacatacc tttggtgctg gtcgtcctag tttgaaggct tgcacccgat cactgctacg 8940 ggtgaagccc ccatcggcaa agttaaacag ctcgttcagc agctgttgta cctccgcctt 9000 ctccaggatc tccgaccgca tcctggtcgg gtctgcgctt ccggcatatt catacgccga 9060 gtgcaccctc ttctggcagg gcatcacccg gcggcaaatg aagttgccga ccacgctaaa 9120 cccgtccagg cgcgaccagt cgatcagctt catcagctcc gccacttgac cgtcgtactc 9180 cgggcggtcg ctccagctcg ccctcttctc gggaacgtac cccacgtcgc agaacgtgga 9240 gctgcccggt tcctccctga cgtagaacca cctcctgtac cattcggtca aagaggtgtt 9300 ccatgggcag tgtaggtagc ggttcttcat cccatcacga aggttgaggt atactccacc 9360 tgcaaccttg gagcctccaa ctgctccctt cttcctcaga cagaaaaggt accggaaaag 9420 atcaaagtgc ggctctatgc caacataggc ctcgcacaga tggatgaagg tggaaataag 9480 gagaatcgag ttcgggtgca gattgcaaat cccgatctca tagtacaaaa gaagaccctg 9540 tagaaaggga tgaacaggaa caccaaagcc tctcttgatg aagtcttcaa aaacgacgat 9600 ctcaccggcg cgagggtcgg ggtagctctc cccttccggc gccctccagc cgccgagctc 9660 tgcgtcgtgc agaagcccca tgtcgacgag gtcaccaaga gactttgtgg tgctgcgaga 9720 ttttttccac tccttggcca tcagttcggc cctcttcctg gaatcgctct tcgccattag 9780 aggtgcgagt gcgcgctggg ctaggaaagt gcaggagatt ggagaagatg agagcggaag 9840 atttgacggc aattgcagga gaagcggtac aggaggtcct attaggccct tataaacccg 9900 cgaccccacc tctcccactt cctgtattct cgggaagtgg gcaggccatg cggcggacgc 9960 ggcgtttcag tttacaatga ttataggcaa ttaatgcggc ggagttttcg taccaattga 10020 tggtttcctt ttctcaaact atgcaaagag cggttgtaca gttgccaggc gcggcttttc 10080 atgcatccgt ctgacatatc gtcaggagac cccgtcatgt caattttaat gggaaagact 10140 ttttcaaaag taagaagaca catacgccag tgagtcagca atccggggac tgcaccgacc 10200 accgagcact cgacgctcgg ggactggtcg cccagtctat cagctcggaa cttcagggac 10260 tgcaccgacc accgagcact cgacgctcgg ggactggtcg cccagtttat cagctcggaa 10320 cttcaaggac tgcaccgacc accgagcact cgacgctcgg ggactggtcg cccagtttat 10380 cagctcggaa cttcaaggac tgcaccgacc accgagcact cgacgctcgg ggactggtcg 10440 cccagtttat cagctcggaa cttcaaggac tgcatcgacc accgagtact cgacgctcgg 10500 ggactggtcg cccagtctat catcttggaa cctcaaggac tgtaccgacc accgagtact 10560 cgacgctcgg ggactggtcg ctcagtctat cggttcaagg ctttaaggca cgtaccgacc 10620 accgagcgtg atatgctcgg agactggtca attagtctat tcaatcgcag acgagcatga 10680 tatgctcggg gactggtaaa atcaattttt tagaccttgc tacaaggctc atacttcgcc 10740 ttccagcaag ctcggggact acatcggtac gatgcatctt gcgatgcatc tcagtctcaa 10800 aactactttg gggaattttc ttttgaccct ggcaccacgt gcctacgtca cctactacca 10860 ggctcgggga ctaagtgggc acacttcacc ttgcggtgaa tatgcttgct ttttaaaaga 10920 ctatactttt tagaaaagta aagtgggcac acttcaccaa gaaagaaatt ttttttaatc 10980 aagagcacca tgcattcttc gaacaacctg cttcttcgat gtcaatgttg atcaactgtc 11040 ttttgagttg gtcaaaatac cgttgcaact gttcgggcga ctttcctgct tattgaagac 11100 gtcaagcctc actgatcgaa gaagctcaag acggcgtgtt acatcacaat acatggtgct 11160 cggggactag c 11171 // ID CINFUL1_ZM_I repbase; DNA; GRAS; 1179 BP. XX AC AF448416; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 16-AUG-2004 (Rel. 9.07, Last updated, Version 2) XX DE Zea mays retrotransposon CINFUL1_ZM_I, internal region, pol gene. XX KW LTR Retrotransposon; Transposable Element; CINFUL1_ZM_I; KW internal region; POL gene. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-1179 RA Fu H. and Dooner K.H.; RT "Intraspecific violation of genetic colinearity and its RT implications in maize."; RL Proc. Natl. Acad. Sci. U.S.A 99(14), 9573-9578 (2002). XX DR Genbank; AF448416; Positions 19780 20958. XX SQ Sequence 1179 BP; 359 A; 267 C; 280 G; 273 T; 0 other; ttggcgccca cttccggtga actcacttcc acttttttga gctgatggct tcgttcaaca 60 atcaagctag agctgcttcg gctccgaagc tggtactccc gataacaggc ggatcatgct 120 cagagcgagc caacaagaag cagaagaagg aggcacagag aagggtacaa catgtcgggg 180 tgcaaggacc cttcatcaaa tcaagatggt ctcacattcc aattaccttc tctcaagagg 240 atcttcaact caaggattac ccacacaacg atgctatggt tatctcttgt gtgatcaaag 300 gattcctggt tcataatgtt ttggttgata ctggcagcgc agctgatatc atatttgcta 360 aggccttcag acagatgcaa gagcccgaag acaaaatcca tgatgccaca catccccttt 420 gtggcttcgg aggaaggcag atcgtagcac ttggaaaaat cacaatgcca ataaccttcg 480 gattcattaa caacacaagg actgaacaag ttgtatttga tattgttgac atggaatacc 540 cttacaatgc aatcattggt cgtggtactc tcaatgcctt cgaagcaatt cttcatccag 600 cttatctttg catgaagata ccttcggacc aagggcccat tgcaattcat ggaagtcagg 660 aagctgctag aagggccgaa ggaaattgga cagactcaaa agcaatccat aacatagatg 720 gagctgaagc ttccaaggcg caactcgaag ctgatactaa gcaggctgaa gccgaggcta 780 caacaattca ggctgaaacc gaagctgggc cttcagtgcc caccgagatg gagcgtgctg 840 accctaagga aaaatcaata gagcggatta caactgaaaa aatcgaagct cctggtcccg 900 aagcgtcgaa caaaagtatt gactacatta ttcgtcatgc ttcgggaaag gtactatccc 960 aagaagaaat gttagaagcg caacactatg cccaaaaatt gagatatccg aagggggcgt 1020 tagtgttcaa tggcagtggc gaagaagact ttttgtactg tctcccggat gacaaagaaa 1080 tatccgtttg ctgggagata ggtaaaagca tcggattccc gaagctggaa gacggtcttt 1140 cgatttatcg aaggacgaac ttgctgacag cgtagcata 1179 // ID ENSPM-N1_ZM repbase; DNA; GRAS; 1542 BP. XX AC . XX DT 28-SEP-2007 (Rel. 12.09, Created) DT 28-SEP-2007 (Rel. 12.09, Last updated, Version 1) XX DE DNA transposon from maize: consensus. XX KW EnSpm; DNA transposon; Transposable Element; Nonautonomous; KW ENSPM-N1_ZM. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-1542 RA Obukhanych T. and Jurka J.; RT "ENSPM-N1_ZM."; RL Repbase Reports 7(9), 792-792 (2007). XX DR [1] (Consensus) XX CC This is EnSpm-type non-autonomous DNA transposon from Zea mays. CC Copies are 98% identical to consensus. This transposon family CC has ~200 bp-long TIRs flanked by 3 bp-long TSDs. XX SQ Sequence 1542 BP; 506 A; 289 C; 240 G; 507 T; 0 other; cactaccgga atcgcgttct ttgccgagtg tctaagacac tcggcaaagg ctattttaca 60 ctcggcaaag gctttgccga gtgtaacact cggcaaagaa cactcggcaa agatttcatc 120 ggcaaagggt tctttgccga gtgctttttt tcggacactc ggcaaagact ttgccgagtg 180 tcaaaaagca ctcggcaaag aaaaacactc ggcaaattaa gaatcgaaaa aattaaaaaa 240 aaacagcaaa acatttttta aattctagga acaactctcc aaccctaccc tattacctta 300 cccgttgccc tatcattttt cactattatt ttgaatcaaa cttatatgtt ttgtaaatgg 360 tgagattcga actcgcaacc tctctctcgc gcataccctc ctataccact acactactac 420 accaattatg tttatattac gtttccattc cccatgtact ataacaaatc gagagtaatt 480 tgattattta aggcactaaa tgagttcatt tgaaaatgtg accaactata aagttgcata 540 actttttgag atctaaaagt tttattttaa tagtttctac atccgagacc gtttataaaa 600 tttgaatttt aaatttaaaa acttcacacg aaattttcaa tgataagatg atttcaaatc 660 aaaaaattgt caactacaaa gtttcattac atttcaagac ctacaacttt tattttggtg 720 gtttttccat ccgagacagt ttgaaaaatt caaatttcaa aattcaaaca tagttttgca 780 taacaagatg atttcaaact aaaacattgt caactacaaa gtttcataac tcttcaatac 840 ctacaacttt catgttggtg gtttttcctt tcgaagtcgt tttcaaaatt caaattttaa 900 attttttaaa ttcagacgta gttttcgttg acaatatgac ttcaaatgaa aaagttgtca 960 actataaact tctataactt ctcaagatct acaaagttta ttttggttgt ttggtaattt 1020 gtttatctca gatgatggtt ctaacaatat gcacaaattc tatacgtctc tctcgtagtt 1080 tcataaacta cgagagagat ataggtttta tgaacaaatt tatttttatt ttgtcatatg 1140 aagaaatgtt caatatataa attgtacatc atgatgagtt atacaaattt gtagttgaaa 1200 actttttcat ttgaattaat ttactacttt aaaatgtgat ttttaaattg tctttgccta 1260 gtgttggaga aaaaacactc ggcaaagagc tctttgccga gtgttgtatt tgtgacactc 1320 ggcaaagagc cctttgccga gtgtcaaaaa aagacactcg gcaaagaaac tctttgccga 1380 gtgtcaaaaa taaaacactc ggcaaagagc ttcttcgccg agtgttttct tttaccgagg 1440 gttttttgcg tggcactcgg caaagagctc tttgccgagt gcccgaaata aaacactcgg 1500 caaagaatat ggcactcggc aaagagccaa attccggtag tg 1542 // ID CANDYSTRIPE1 repbase; DNA; GRAS; 23050 BP. XX AC AF206660; XX DT 00-0000 (Rel. 0.99, Created) DT 16-AUG-2004 (Rel. 9.07, Last updated, Version 2) XX DE CANDYSTRIPE1 is a putative En/Spm-like nonautonomous DNA DE transposon. XX KW EnSpm; DNA transposon; Transposable Element; KW 3 bp target site duplication; CACTA-like TIRs; CANDYSTRIPE1; KW En/Spm superfamily. XX OS Sorghum bicolor OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Sorghum. XX RN [1] RP 1-23018 RA Chopra S., Brendel V., Zhang J., Axtell D.J. and Peterson T.; RT "Molecular characterization of a mutable pigmentation phenotype RT and isolation of the first active transposable element from RT Sorghum bicolor."; RL Proc. Natl. Acad. Sci. U.S.A 96(26), 15330-15335 (1999). XX DR GenBank; AF206660; Positions 1 23018. XX CC CANDYSTRIPE1 does not encode for a transposase and it may be a CC composite nonautonomous DNA transposon. XX SQ Sequence 23050 BP; 6811 A; 4789 C; 4605 G; 6825 T; 20 other; stamgdgnat anycnywnrv tvysnsdakt htcactatgt gaaaaaagct taaattcgca 60 tgtcatgtat aagaactatt aaacatgcgt ctgtaataag aattaacaca gacgtctgtt 120 gaatcacaag cgtctgtaat aagagtctca ataaacacac gtctctgatt atcaataaca 180 cagacgcgca ttgcacaggc gaaaattaca gacgtttgtt tggtgtacac gtctgcaata 240 ttcttatctc agacgtgcgt ttaaagaggt gtctgtccta ttgttttgga gctgtgggcc 300 tctagccgaa ttgggcctgt ttgagttggg cctagtgtcc ggttgatatt cttttatact 360 agacatctca taataggaac agtcccaaaa ccttctttta gtctctagta attatataaa 420 gaaaaaggtc tacataatcc cccaaactat ctaaggtgga atacttcatc ccccaaatat 480 aaaaacggat attctacccc tgaaactttc aaaaccgatc aaataacccc taaagtggtt 540 ttagaggatg attttgtctt tttctttttt atttatttcc gctgaatctt tgaaaaaaca 600 taataaatca cagaaaaatc ataaaatgaa aaattcaatt ttgttggact tatgatgagt 660 agatctacag tatatttgac tggctacaat ctcagccttt gaagaatcga tgactcttgc 720 tgacggagtg gcccacattt ttacagactt taaaggatcg atgcaaagtt ttcaaactgt 780 tcaaccaaaa tttcgggtac tgttcatccg aaaatctgac aacagctgtg catctgaaca 840 tgcaaaacat gcagcatctt attaaaattt atgaactttc aaatgtccaa ttacaaatac 900 atgtccaaac tgtaaaaatt acatgtgcaa taaaaataca ttgtacaaat gtctatgaca 960 aatgtaaaga tacaaccggc aaaaactgat acatgccagc atgcagtaca aacaaattac 1020 atgtccaaca ctttcaaata gaaatcatac aaatcaagac ctattgaaca aaccatttgc 1080 gatggagtca cgaaatgcat tcatctgctc acattccgca gaggtgggcg cagggacaca 1140 ctccggctga tccatatatg cttcaggatg cacaaagttt ggatgacggt caaggtgatc 1200 gaagtcacta tcaaatgcgc cactcaatct catgaaatta tggagagcac aacaagcaac 1260 tataatgtgt gtttgggttt ccggtggata gcttgggaca ctcaacaaca tacgccactt 1320 catcttcatt accccaaagg ccctttcaat cacatttctt agagacgagt gggcatagtt 1380 gaatacctct tttctacctc gaggttctgc gccgttttga aagtcttgca gatggtactc 1440 gcttcccctg tacggtgcaa ggtatccggg tcggtttgga tagcccgagt ccaccagata 1500 gtatttccct agagcaccac caagctcctg taagcgtcaa tggtttgaat tagacaaaaa 1560 tattgaactc tgtacaagtt gtatacctgc agggggatga ggaaacacat ccttgtacgt 1620 tgtcaaagca tcatcgaaga ctctcatgtc atgcactgat ccgtcaaagt cacatgcagc 1680 cagcacattc tgtgttgttt tgcccttcct acacaggtgc tgaatgaact tgtccgatgg 1740 cacaaccata ggaacgtgag tgccatctat agcccctata catccgttga agaaaggaaa 1800 aaacctacgg ttctgcagtc tatcatgcat tgttctaaat aataggtccc ggggcgcaat 1860 gatgtcatca ccaagcttaa ggacacactt caacactcta tgaaacaggt tgtgaacagt 1920 tgctagtgat ctctcaaatc tatcctcagc ttgcctaaca gattgtggtg cacctaccat 1980 ccacaggaac attcctaggg cttcaataga ggtagttttt gggttcgatt tgaggccata 2040 tctatctgtc agtaaagaat gtagcctaaa gaacatatct ggggtcatcc taaacatgtt 2100 gtagcatgaa ttagcgttcg caagcttcct ttgtacccat tccaaaccag ttataggtgg 2160 aaccctataa ggacccctac tgcagtactt ctctaaatgt gaggcataca tgtacttctc 2220 taaatgtgag gcatacatgt acgtaccagt catgagaaca gtaacttcct catcatcctc 2280 gtctaacatc agtaatttca acaacttagc acgtcgagac tcctgactac cacgggtatt 2340 gccaatatct cccaacatcc tcgtgccctc ccggtgtctg ttcaagtgaa caacaacaac 2400 aaacaaatga gttcaaattc aggcgttcaa atttcatgca gcgcacccca aatgtcattc 2460 gaactggtaa tcaccaatcg gtaggccaag tgaaaataag attcaaatat cattcatgaa 2520 ataaaggttc aacaaacctg atacaatacc atactgcatc cctccgactc actacaagtg 2580 ctacagaaca tacattaata aaaacacaac acatgactac tctaatgctg cacgacatat 2640 atgcatgcat gaggaggact agttgccgac cgaggcatag tgctcgatga cggccaatct 2700 gccttctggg gtggagttga tgaagaactc catgaggttg ggcactagga cgatcctcat 2760 gacaccaagc cacatcttgg gttggcttca gatgcgccag cttctcgtgc gagctgctgc 2820 acgagctaga tcttgtcgtt ttggtcctcg tcatccttgt caatccccag cgaacagtcc 2880 ctaaatagtt tcatgtttag actgcatgat attgctcacc ttgcaaatgt ctcgctgcat 2940 agcccgtaca gcgctttgct tcttggactt cttgttgggg cgagcggctg tgctgcgtga 3000 gctgttgctc ctcttgcaac tcaggctgac aggggtgaac tgctcgtctt cctcatcgtc 3060 catcgtcgtc gccgaggaca acctctgtgc ggccacgttg tcccgaagcg tacgatgttg 3120 ttccgtcgac tgctacgcca ctgaacatgc ggtccagctg tgggaggtac gtaggccacc 3180 catccttgag cttcttccac tcaggatgtt tctgcattgt aaaaatgtgc ataagtgttg 3240 caattgtagg tactgcatgg attgtatgta actggaagag ccagtggcac ttacccccac 3300 acttgtcctc ccaccatgaa tctggtgcaa gaatggagcc atcgtttctt catccgagac 3360 ccgtgaattt ggttcgcagg tcgttaatga aatgccacat ggccttcaac tgcctgaccc 3420 tactactgaa ttggtcattg tcatgaacta atcccgttgc tgcatagtac cgttcagcaa 3480 catccttcca tccccatttg ctcatgctac cccaaacaca ctggcctaaa tctaattgca 3540 tgcaataaat atcacagaaa gtgtgtgtgt tttcagaagt ccagttggcc ctgctagttt 3600 cgtgctgcaa tggacatgtg taaaaaacat tcgcacagga agaacacata gacattgcag 3660 cagagataag tgcagcgata gtgtgtacta gacatgcatc aaaggaatgt aaagaagctt 3720 agaaaggaat aaaggacact taccgggatc ctagggtttg ggttgtcgtc gctgtcgtcg 3780 aacgtgtcgg acggaggcga ctgccggaag cgacgttgtc ttccacctcg ggaacgcggg 3840 gcgcttggag gacccatagg aacagggcgc tctggctcca cggacccgac acgacgtcgt 3900 ccgggccctc gaactgccgt tgtcccgccg cgacccgcgc ggaacacagg tgcagcaccg 3960 gtgttcgggg ccggcacgcg aacgggcgga ggaaccgaag tgaagtcggc tccgccttct 4020 ccatatgcgt cgaggctgga ccacccttcg ccggcgttga agtcgatgtt ggagaaccca 4080 aggtggcttg gggtccgggt tggcgctgga gcggagcgct ggcgcgagga cgaatgactc 4140 ggaacgacgc gcttcggaga ggaagtcgcg ggcggtgcgg tcgtcgacgt atcgccggcg 4200 tatgtgttgt cgtggccgaa gaatcgtcgg cgttgaagct cgccgtggta gccgtcgccg 4260 ttgaagccgt ccatggcgct tgctgtgcgt ccaagagcac cggatctgca cgcgttcgcg 4320 gcggatctgc acctaccgcc ggtggatctg gaggaggaag gtgtaatgcc gcgcctgaac 4380 ggcggcagag gggagaagag ctagggttcg gccacgcgag agaaacggcc ggtccacgct 4440 tatatacgag ccggtgacca cagttttttc ggtgaacagt gcggcccgaa taatgaaatt 4500 tcggcccagg cccgtttagt tccgaaaaac ggaaaagtgg cccacaggcc gaaatatttt 4560 cggttttcgc aacattaaag gcctgcacgc ctgcacctga atgcctcttg cgcccaggca 4620 cacactgtgg acggtgaccc ctgctgtgaa aagtgatgcc cacatcacaa gccaaacacg 4680 ggcacgcatg cagccgaaca caggcacgcg tgcagccaaa cacaggcacg cgtgcagcca 4740 aacacgggca ggcgtctcag tgtcgcaggt gtcgaacgga gaaccgagcc caacacatgc 4800 gcatctacta ttcatacatt ttttttcttg ttctatgtgg gcctacacac tatagctatc 4860 gaactgtaat atatgttact tttattactg cttgcaaggt tcgcctgcac actggagggt 4920 ccagttataa aaaattttag gaaatcgata tattcgtctg gtcaattctg accaaactat 4980 tcgtctcatc aaatttaacc aaactgtgta attaattttt atttgcatct atatttaata 5040 ctttatacat acgtctaaag atttgatatt acttagaatc taaaaaattt tgtaaacttt 5100 ttttaactaa acaaggcctc atgcgctcga tgaatctttt aaacttagtt tactccgtaa 5160 ttaaacaatg tttgtcaaat aaaaacgaaa cgactatcta aaatttttga gaactaaaca 5220 agaccattac ttgctcttag acctggttta gttcacaaaa aatttgaatt ttattactgt 5280 agcactttgt ttttatttaa caattattgt ctaatcagag actaactaaa cttaaaaaat 5340 tcgtctcggt gtaattagtt tttttatcta tatttaatgg ttcatatgat acaagatttg 5400 atatgacgga gaatcttgaa aaaaattgga actaaacaat gcctaaggcc ttctgcagtg 5460 tgctcttgaa gtggtgctaa aattctatct ttccactttg agccgatgcc aacaacgatg 5520 cttgaaataa aagattcgat gcatgtagaa gcacccatgc ccattcatta aagaagtatt 5580 ttgtttgctg tgcgagccag attgcctctg cacctctgac tctcaagaat caaaatgcac 5640 cagcatccga gtggtgctag ttttgttttt tacagatttt tgtgggcatc gcttccacac 5700 tgtggaaggt cctaagagag gacgaagggg atctgttgat ttgtttggag catgatcgag 5760 ggtcgagcgg gggtgctata cattgcaagg acaaaaaagg cacaatagcc attttggtcc 5820 ctcaactatt actcgaggct caatttcgtc cctaaatttt taaaacagcc attctactcc 5880 tcaaacttta gttttaggct cagttttggc ctacaactat gaagatgatc gtttcagtcc 5940 ctaaattttg tattttggac tcaatttcat ccataaacta tcaaagtgca tttaactttt 6000 tatttccaac ttcaattttg tctattcaaa aataaaacat tatattttaa gcataatttc 6060 atccattcaa tatatccatg tattcttgaa gaataaatag tgttcgatgt aactataatt 6120 gctcccacaa atatcaattt agttggacat atataaatgg tacaattata aggtaacact 6180 aaaaataaca gcttggaatt atcaatggcc atgaaagagt ttttggataa atattatttt 6240 tctatcttca attgttggtg gtgttggagc taatgatgta caatagtgca gcattccgcg 6300 tacaacatag aagaagttca gttaaaaaat aaaagttaaa ggataaaata cactttaata 6360 gttttaaaat gaaattgagc tcataataca aagtttgagg accaaaacgg accatcttca 6420 tagttctaag gatgaaactg aggccttgtt tagttccgaa atttttttag ttttgtgtac 6480 tgtagcattt tgtttttatt tggtaaatat tgtccaatca tgggagtaac taggcccaaa 6540 agattcatct cgcgatttac gggtaaactg tgcaattagt ttttgttttc ttctatattt 6600 aatgctccat acatgtgccg caagattcga tgtgacggag aatcttgaaa agtttttggt 6660 tttttgggtg aactaaacaa ggcctgaacc taaaagtata ctctgaggac taaaacagtc 6720 gttttgaaag tttagggacg aaattgagcc tggagtaata gttgagggac caaaatgact 6780 attctgccga caaaaaacta agagctatct agtcggttgt gggcccccca tcgacccctg 6840 ttattatttc ggatgctgct ctcaatgcaa gcatccaaga agacccaggg agacaaagat 6900 ggcacagtgc aagcatcatc cggtagagta aaaagtaaaa ggcaggaacg taccagcgag 6960 acaagacgca gcgagacgac gcagcgagac aagacgcagc tgccaggaca ggtgctcttg 7020 aattcgtccc cagtagcgag gaccacgtgc actcctcttt ctcttcacta ttcccttccc 7080 tattccttct ccatggtcca tgtactgtag cgacttttga cttcctttat cgccagcaaa 7140 cagtgtgcaa atgtagcaac ttttgacttg cctataggtg caaatgcagt gggcatcagg 7200 aaacaggaaa cacaaatgga agaatcaggg gaatggtgat gagatcggtt tggggatgcc 7260 atcattgtag ataaaatctt aatcgataaa atacagaaca gatggatgct attaaggctt 7320 tggttccact gggagctcct aaaaggtgct actaaatttt agtctctttt aacaactcca 7380 ggcttctaaa agttattaga gaggactaaa gcacttttat agtcccataa agagctctaa 7440 atttgatccg tgagtaaacc aaagaaatac aagagtcgta ccactctacc actctaggga 7500 gtacatgcac cagcatcctg gatatccaac ttgcagagta ggatacctgt gaaacctgta 7560 caaaccagtt agccaataag aaatcactga acggaaagga aacattcgta ataaggcaac 7620 atttggtatg gacaggttaa acatgacatc tgctgaacat gttactttat agcaacctgc 7680 acagagctat tttctaaaaa ttttgaggca atcttcatgt gaaccgcaat ctttttaagg 7740 caaaaggaca tcgaggtgta ggccttgttt agttcccaaa aattttgaaa attttttcag 7800 atggagtatt aaatatagat aaaaaaaact aattgcacag tttaatagaa atggacgaga 7860 cgaatcttcg caactccagc aggtccccta ctcaagcccc aaaagctaaa tataggtgtc 7920 taggctaaaa acattattcc agcaggccct ccagacccca tattcggctg ggcacccata 7980 ttttccctca gaccccattc ttgttggccc aagcccccat cctccatcgc gtgtcctagc 8040 ccctacatcc tccatcgcgg tcctagcccc taccgtaacc ggattgatgc tctaattgtg 8100 ttcctatcca aagaagagaa agaaaaaaaa agacaatgac gagtgggtcc cttatgtcat 8160 tctctctgga ataggtttgg aggcccaaat ttgggtgcta atgttggagt tgaagcaaaa 8220 aaaagttgag ccccaaaaag tagggagagc acccaaatta aaagtagggg tctagtttta 8280 agggctactg gtggagttgg tggagttgct cttagtccat aattggacaa tatttgtcaa 8340 atacaaacga aagtgctact attcctattt tgcaaaattt tttggaggta aacaaggtta 8400 actaaaaatc ttttgccttt ctgtagtgag cacacggcat tttttagtca tcatcattat 8460 ttagtttttg catcaggtat atggtccata attggacaat atttatcgaa tacaaacgaa 8520 agtgctacta ttcctatttt gcaaaaatat tttggaataa acaagttaac taaaaagctt 8580 ttgcctttct gtagtgagca cacggcattt ttgactcatc atcattattt agtttttgca 8640 tcaggtatga gcaagcaaaa ttacatgtgc acaaattgga agcctctgtg ataaggcagg 8700 tatccattct aagctgctgc attgcctatt tattttgcag gatcgaaatg taaccagaaa 8760 atatttcatc atcaaacaat gatgtgtcaa tgcatcacta ctaaatacat acaccgcagt 8820 ttggatgagt attattattc agtaggagca caatattgtt tttgcttcct tcagtgtgaa 8880 accgcagtaa agcatacatg atattccacg gttcatatac ccatttagga gatgataact 8940 ttcatacata gtaacatagt actaggaagt aaataaaatg gtgtgtacct tttacgcttc 9000 tagcttgaat tgtaaatctt ctaaaactta ttattgactg ggaatatgac gtgctccctt 9060 cagtatcaat ctgcagcaaa gcatacatgt tttgatgtcg attactataa aaactgtaga 9120 tgaagatcat tcaggggaca atgctaaaaa gagcggacag aatacctggg acacccatag 9180 cactatgaaa atcactgact ataatctgga atcaggctgc tgcaactcat acatggtttg 9240 atgtcgatta ctatagcaaa ttgaagaaga aaaaatagtg attgatgaat catgtaaaac 9300 catgccatag ttcactggaa aaataaatga ctgttggagt accccaaatc ttgggtaaaa 9360 gagaagagaa atattgcctt tattatttca accagctgac caagaccact tccacaaagg 9420 aacctttttg ctctgaaaat ctagcagaaa acaacaaaat tcagtgctga agcaaatttg 9480 agggtcactg aatcacaatg cgaaaaaagg ctgttgcttc ccaaattaga acctgatttt 9540 tctttagccc caaattagga atggtgaaga tagtaatatt tcttgtcgaa gttaagcaaa 9600 gcaataggaa gatctcaaac attaatcgag acatctcacc ttatcataca caggggccag 9660 aggttgtgta gtgctcatcc cctcattaat cctcaatcaa tgaagaatag caataaccat 9720 ttaacctgca aatgtagcaa gtttattttg acaaaacaat cattaatcct caatcaatga 9780 acaacaacaa tgcgtactaa acctgcatat gtcgtgattt tttttttgtc aaaaattaac 9840 catagcatta ggcagatctg agacttggac caatatcttt tgttctatat ctagtataaa 9900 gtgcatagca atatattata attacatgag aaaggtaact gtagtgagtt catagtgaaa 9960 tggagttgga agccgcatgt tagtagttgg acttctaaat aaaaaaaatg tgtcactgac 10020 aaagccgttg tttacagcac agatggaagc cccatataca ggcctaacac ctatttaatt 10080 caatcatggt aagaaatcgt acattgtaca ataaaggcaa gatccgaggc caaaaattaa 10140 acagttccca ctgtattgca ggcatcttta ccacgggcaa taagattata atttggaaaa 10200 gcaacatgga caagcatcat atattcatat acataccaaa atgcttcatc tatgtcagga 10260 tggactgcta ctagagcaca tatccaaaca tgaagtttct ttgaatgtat tatcctacct 10320 cagtttagga aaggaaataa aactatcatg atcaatctaa attattttgt aaacgaacta 10380 ttataattat ctataaaaat atgtgtacac taaaatatgc attgaaaagc taatttgttc 10440 agctcatcga ggagtaaaac atgataagct ttttttgaaa tcttgctcct tttctattgg 10500 ttaggcaata aacaatattt atccaatgca ccatgttgca agaatttcat cttctaaaaa 10560 aacctggcac agcatgatcc ctgaggagtg tgataagaaa cgatttcatc tcaggattgc 10620 atgtagctca atttcaagtt cttaaattta cagcatgtaa aacaaatggt gcacactttt 10680 agcccaggca taatttgcaa gcaaaagtat tcactattca gtaacatata tatttgttca 10740 actgaaattt gaaggctggc ctatttttgt taacatccaa aatcactttg tgactaagtt 10800 ccacggccat gactgcgttc agcagccata tttggctaaa taaagcatgt gcctggcatc 10860 acgatcctaa aaagaattga gacagattaa tacaagaaaa aagggagcgg acctgatgga 10920 gatgctcgcc gccagagccc ccacgcgggg aggggagggg ctccgcccgc gccgcctctg 10980 ctcagggggc aaggtcgccc caacgacgtc gcgccggccc cgtaccgccg ttgcagattg 11040 agggggcgtt cgtctgtcca cgccggagcc ccgccgcgcc agaggtgcct cccttcccga 11100 gatcggccgt gccagggtcg ctggcgccgg ggacgaggcc gtggggaagg acaagagagg 11160 gagaagccaa accctagccc gctgcgccgt gccctgggat gccgtcgtac tccaccatga 11220 gccggcggca cggatctggt cgacacggcg agacgcgacg cgagtggaga ggaggaggcc 11280 ggccgtcgct gctgcgtcgc ccgcgccgcc ctggtgggga tcgagaacgt gagggagaga 11340 ccaccggatg atggggatga ggggatgaga aatttgggga aaaatctaga acgagaggca 11400 ctgtggagct tcttataggg actttttttt atatgactta gagcatctcc aataacttgt 11460 atttcaactt gctaccctac aaaatttgct aaaacataaa aatcctcctc caacaactcc 11520 ttatctcaac ttgctaaatt tcccaagttg ttatctagag gtttctactg ccgagatttg 11580 tcaagccaag ttgctatccc gagcgcaact tgttggagac acatattctt ttaccaaatg 11640 agcggtccca tctgtcatcc tctattttta ccaagtgaga atagcataaa cccttaaaaa 11700 tcatgtttca ccatttgtct tattcaaaaa ttttatgtaa attataaaat aaataaatca 11760 ttagtactat cgctaatgat aaaatagatc ttaacaaaat atataatatt tatgtaaaaa 11820 ttttaaataa aacggattat tagacaagat gtctgaaatt ttaaaacaac actttttttg 11880 gacagataaa gtatgtatca aacaataact aatgtagtat ttatttgata ttttttatta 11940 aatcgtaatc gtcacatcat cttgccccta catctaagat ggtgtctgag tcttcgtcct 12000 tgccgaattt gggcaccgtg ttcctttttt aaagcatgtg tagtatgtaa ttttttttgt 12060 taaatatgtg ttatatcaat atccaaaaat ttaaccaacc aaaatattta tctttaattg 12120 tgaaaatttc tcttcgcctt taatttctgt ctgcgccttt tcattgcgct gattgtaaag 12180 aaaattatag tctgtgaaca ttggggacga agaaggaact ctaatggaac aagagaggaa 12240 ctatgacgat ccgcatggaa aagacaaaat ttccgcctag gtgccatgga ccaaaccaat 12300 accataaata atatataatt aattgtcttg gactctgtga tgagtcttgc attgtgagtg 12360 taaatgattt tctttgtgag tatggagagg gtatatatac acaagcattt agtatgcagc 12420 cgctcatgac actgtagcta gggtctaacg gaggtggcat ggtggggcag tagacattta 12480 tgcattattg gtgacaagat ggaacagtgc tacttgctcc cttcgggagc tcatgatatt 12540 ttgttaaacc aaacatgtta aagtcgtcaa aatatattaa caactaaaat ctttatttat 12600 tcaaaacaac aatttttcca aagcaaccca gacgcgcgta aggcgtacat atatttaata 12660 atttgacaaa agttagtgtg ttttatttta atgaaacatc aaaactggta attaactttg 12720 gcatctgaaa aaaatagcta tcctctaaaa agatgaaaaa aatagcaaca tggaaagcat 12780 gcagacagta gtaaaatttg gatactatag cattttattt ttatttaaga aatattatcc 12840 aatcatagac taactaggct caaaagattc atctcgttat ttacaggtaa actgtgtaat 12900 tagtttatat ttttatctat atgtgcttca tgcatgtgcc gcaaggttca gactgcattt 12960 tctaataaac agaacctaga atagaatatg aaaagaacct aaaatagaaa tagttattaa 13020 ttaactgaaa ctggtttttg tttttggttg ataatatctt ggcacttgtt ctttttgctt 13080 tttttttcta tgccatgttt gcagcgaaac aattgtgcaa ataggacgtc accatgttga 13140 tgcaactttg tctggagact cttttcgtcg gaggcacaga gtaggacatt tgttatgaat 13200 gttttttgtg aagcactcaa taccgactac aaagcaaacc cagatttgaa gccatccaaa 13260 tgtttcttaa caagtgatgt tgtggtaata tgattacaat aactaatctt atttttatca 13320 tattcaactt gtacatgtat ttttttaatt cacaattttt actgcacctt tccttcttac 13380 acatcctttt ctatttacat ggcaggacaa actttgtaca cagacatttg aagtttcagc 13440 atataattca tatctctcca gtcgggtgat tggtttttcc attaacaaat tcaacatggt 13500 tagcatggat catgtttcta gttttttatt cttacccatc atagtcccag ttcaacacat 13560 tttttaaatc aattgcccca ggtcatgatc ccccggtgtg caaatttgaa cattggtggt 13620 tgatagtagc taacattagg gaccaatcga tttgatatcc ttaactcttt ggaaatggat 13680 ggtaccacct caaagatgac gaacgagata gtgagaaaac ctttttttca cacattcatt 13740 tggtttattt caaacataag tttcatatca tttatgtctt ttttcaacta ttcaaagtac 13800 tcttgtttat agtcttttta ttttatccac ttttgtcagt gtgacaactt cagaaagcta 13860 taccgacaca attttgggaa ggtgtttgac aagttgagtc tcccaattca agtacaacca 13920 gcaccgcaac agaaaactgg gtattttcca tacatctgcc ttcttctttt gcttcctttt 13980 tctttgataa gttctggaac tagtagtgca aagtttcaaa atattttaca agacagcaca 14040 tttttttatt tgtaaagtca tgactgaaag ttaataattt ttttattgta aagttctcaa 14100 tcaagcagaa ttttttttat attgtcatag ttcaaagtat tacacctgca attatatatc 14160 ataatttgat aatttctgag agtaaaatat tgaacctagt aaaaattctg taatatcata 14220 attttaaagt tcttttttac tcattttaca agtgcaaatt tataaaccta gctgtacaca 14280 gtttatagta tcatagttca aattttttcc accattacaa agttttgcaa tatgattaac 14340 actgtagtac aaaagtttct catctcttat taaaagatat tttatttttc tgagtatgaa 14400 ttgttaaagc tatatgtacc aagttttctc atctcttgtt aaaatatttt ttatttttct 14460 gagtatgaat tgttaaagta ccaagtttta tagggttaca gttctaattt ttaatctagc 14520 ctttttttta caaaagcccc taatactttg gttgtaaagt tttcaacgta ggagtataaa 14580 gtttacaatg tcgtatttca aagtttgctg tctaggatta taaattttat actgtaacat 14640 cccataaact ttataaatgt taaaaacttt gaaccacctt ataaacttat actacttgct 14700 tcaaagcttt aggattttaa aactctacac ctaatttcat aaattttatt ttatctcatt 14760 ttaaactttc tactaagatg ctatggactt tatatatata tctaaattaa cattttataa 14820 tagcaaactt tacactccaa gttttgaaac tttgtattct gatattggaa acttttataa 14880 ttttacatgc aaaactttat catctatatt taatttcaaa aactctttaa tagcgcattt 14940 ttgaaacttt tttactgata ggctactagt ttgtgtcaac ttttttttta acttcccatc 15000 caaagattct aatgtcatag tgtttatatt tccaaatgta atctatttta tctttttttt 15060 ccaaaaaaac agctttgact gtggtatcta tgtgatgaag tttatggagc tttgggatgg 15120 caggaaattg catttgcatg acttatccat ggtttgtact tttttttttt gcttttacac 15180 atttatgttt attctttcta attttttacc catttcttat gggcaacaca gctgacaagt 15240 gcatatcttt tttttttcaa aaataaacaa tatgctacct ctgtgctcga ttgtgaagga 15300 ggataccaac acatatcgtc agaagattgc aaattacatt ctgagacacc caaagaattt 15360 aaaaacaact gctgctgtga agaagtttat aagttcagac acataaatct cctcaggtac 15420 ataacatatt atggacaaac tcattatgcc tgtttttctt tcagtcatta taattcaccc 15480 actacttcct tgttgcctaa tccaattcat ccacttaata cagccatcta gacaaaaatg 15540 cagtatacat atatgactga tattatgttt tactgttcag gtttaaaaat gcaaactgca 15600 aggtgttcaa ctcaacgatt tcaagaagga aatggagatt tcctaagttc cagcaactca 15660 acctcactct ctcttatcta tatatatata cacactctca gtcagcttgt aacagatttt 15720 tcttagaaaa tgttagtggg gaaaaatatc aaaatggtgg atgtctgggt agaactcaaa 15780 ataacaataa tatgcgtttt ttttaatcta tgatgttcca aatacttttt ggctcattca 15840 aaaataaatg ttcaataaaa actatgatgt tccaaataca ttttggctca atgaatttgt 15900 aaaatgtttt gtgctcaagt gaggccagat tttttcaaag atctaatatc gtggttgccc 15960 ttttttttta aaaaaaaaca catcacgctc attatcctag cattaagtct gaggcccaca 16020 atacagtgtc ttctttttct ccctcaccgt ttaatttttc cccacctctc aatttctcac 16080 catatatata aaaaagcccg aactgtccct aaaaaaagcc cagactgtta tcgtctacct 16140 aatcggcctc ccggctttgt taaaaaaaaa tcggcctccc caccgtgatc agtgtggggc 16200 gacgcggagt ttggcaaaaa ctgtttggca aatctaagta aaaaggatgg caagtcaagt 16260 caaatatttg atgattgcca aaacttaaca aaacctcttg tgcgcaaagt ttcttgtata 16320 cggtgaaaag tttattgttt atcaatggaa agtttcctgc gctaatagaa agttttatac 16380 tggtgaaatg gaaagtttcc tgcgctcttt cttgtctgcg ctaatagaaa gttttatacc 16440 ggtgaaacgt ttattgttta ccaatagaaa gtttctgtgc accagtgcaa agtttccttc 16500 aaacaatgtc ggccggtctg tgccaggaac aacgagggga cgacgggcag aagtttcact 16560 tgccgcccgg gaaagggaaa gaagaagagg gatcacgcgt tggcaagcga gtccggcagc 16620 cgctcataaa tttgccaagc gtgttaattt gctttgccaa acacggttgg agatgcattt 16680 ttgctcattt tgccattttt ttttgccaac gagatgctct aactccacag tgctcccgcg 16740 ctcggcactc aaaaaaaaac tcgtcctttt gtcacaaaca gagagttcta gaaaccgggt 16800 gcccccacct cccacaaccc ggcccggctc ggcgctcccc ttaccagccg ccgcctccgc 16860 tgccaccccc gcccatcgcg cgaccgtccg tcgtctctca acggatccgg cgaggacgcg 16920 tctcctccgg ccgcttggac gtacggggag ctcgcggagt ctccactccc ggctagcttc 16980 gcggctcctc ccctctggat aggagaactt cacatctccg cgaagcggcg agccccggcc 17040 tctccacgcc tgccccggcc tgcgacctcg cgaacagcca tccgcgcgcc cgcttctgaa 17100 gctcgccgtc gccctccacg aaccgacatc ccgcccacgc cgcccacttc ttggattctc 17160 acactcgccc tcttgtggaa ccgctgtccg ccctcgcccg cagcagtaca cgagcatcag 17220 ggacgaggaa actgccttgt tctttgcctg ctccgacatc gccgttgtcg ccacgacgca 17280 gaacaccgag cggctccaaa gtacgcagca tcggcatctc cctgttttac caagtagtac 17340 cactgttttt acaactaagt tactcaattt gctcgctatt tgcagcaatc tacggcaacg 17400 aacaaaaggc ggtggttatt ggtgttagtg gtggctgttg cctacgcaca gagagccctt 17460 tctgaatggt atgcttttgc tttgtgatat acgtgactag ctaggtactc ttacatgacc 17520 gatcgagttg tatcatggtc cctaaaaacc ttactaaaat ttattttgta ggattttgat 17580 aacgggcgcg caccatcatc tgccgacgta gaatctaatt acaatgcatc agatgaggga 17640 gggagtagtg atgcttaatg cagagggcca atatggacat gatactgcag ggagcaagag 17700 agtgaggtgc aggcatctca acctccaggt tgccgccgga gaaacaggaa accggcacag 17760 tggccaaccg acaagatagt cgtcagagag atcacagaga atgggatgcc cactgagctg 17820 agggccgaga ggaggatgaa gaggcttgct ggtttgattg ctagacaaag gttgcccttg 17880 accttgcttt catttgatgc cctaactgaa acacaaaggg agaaattatt tcaggattat 17940 gtccaacctt ggttggagtt tgaagaacca ttgcaggcta aggcgagtaa catgctgatg 18000 aggatggtaa acaaatcttg gagaacccac aaaagcgacc tagtacgcaa ttttgtcaat 18060 acagggttgg atcccttgaa gaagcaccca tacattcagc ttgaagattg ggaaacattt 18120 gtgagcctac aggagaccga tgaagcaaaa gaaagaagtg agttttacaa gaagcttcgg 18180 gcgaagaaca agaatgacca ctgcctgggg acaggaggat atgctacagc acttcgaaag 18240 tggaggaaag aggatttgga attagccgcc aaaggcctca gtaatccttg gcacaaatgt 18300 cctgagggtc gccctaggaa ttatctgcgt gcacatggta agttggttat gacgcctgaa 18360 ggtttcccta agattcaatg gttgtctaag tcagctgaag cggtctctca gcaagttgta 18420 gagaaacaag cagaacttga gtctttaggg ctcacaaaca agttggtcag ggataaagat 18480 gtgctctcac aggtcttggg caaagaacag acagggcgca tgcgcggtgt ttctagttat 18540 tttggttgga agttttggct gaattacgag gacatgtata ggaagagaag cgttcagatg 18600 tggatacgga tgccattaaa gaagaaattc gcggggaggt acttagagat gtcattgcca 18660 tgctacgtgc acaaggagtt aatttgcctg acctgccctc caacactaat ttgcctgacc 18720 tgccctccaa cactaatttg cctgacctgc cctccaacac taatttgcct gacctgccct 18780 ccaacaccct tccctctatg ggtgctaagg acaacagctt tgcctcaggc gctgatgcgg 18840 tctgcaacaa tgtacagttg gacggacctg gtggaaatgg caattcatat ccaaatcctg 18900 tggatcttct cacagagcca acatattgta cacttgtaag caactctgga ggttatccgg 18960 tggaggtagc aaagggtcaa gtattcccaa accgaactgt gttacattca gttcctatac 19020 aggatggata tgttgttgta ttagttgatt ttgtacatcc gggccatgag agctttgtgt 19080 tgactccgcc accaaatgat gagataacaa ctcttggaga agctttgttc acctggatcc 19140 agtggagtaa gagtggcatt gtgatatcac cgaaggaggc ccctagtaaa agctctttag 19200 aacctacatg gcctgggagg tcagccaaag tcactctaaa ggacttggca tgcaaagttt 19260 catcctcaca cgacgagaaa tatgagagtg cccctattgt aggaaaatgt gcttccaagg 19320 agcttgcaga aggaaagaaa aaaactaaca attccacaca tggtccagct gtatctgtcg 19380 catcctctag agcacacaag agtaaaaata ccaaacggga ccagcaggtg ggtggcaagc 19440 agcagcagca ggcggaaccg accaaatcgt ctaggagtac gcctgaggat tccttattga 19500 tacgtcccaa ctccaagttc aattttggac agccaatgct atcagaagaa gaaattttgc 19560 aggcaggtcc taagtgtgct gaacttcata tctactacat gaatgcatgt gcaatgggga 19620 gaaacatcgg tataataggt agggtgaaga gccatttttt cttgcttgac ggccaatatg 19680 tgcctctcac tgtgggattt gaagatgtgt ttgacctcct cacgttcgat tcattggatg 19740 tagcaattct tcgcgtgata acattgtgcg tacaatttct tctcttttag acatgttcat 19800 ttttgtagct aggaatgctc ttcatgtgtt agcattgctt gctaaattga ttttctatgc 19860 ttctttattc ctagatacct cattgcggta gctacaaaga aatctctgcc agttgcgctt 19920 cttgatccag agccattgag aattgatacc ctgagaagta atagggatta cagtgtggcg 19980 tatctggaaa gatgcctaat ggaatataac caaaaaaaat atgtggggtt tgcatataac 20040 tctggtaatc actggattgc tgtcgtcatc gttcctagct ggcacaaggt gttgtacctt 20100 gactccaata gaggcgggaa gacaaatttg agtccgttgg tctctgtgat agatgagtga 20160 gtactttcta acctattatt gcccctttct tataaatatg ttattgagtc caactaatgt 20220 tgtaacaact cttgtatgtg aagggcctat gccaactatc aggccaagac aaggaagaca 20280 gaattcaagt tgactcatgt ccccaaattt ccagttagta gtgcttcact tctagttgtt 20340 aattagtgtt ttatttatat tagtaaccat gtttgatcat atgatcgcag tgcctacaac 20400 aaggtatgga caacacttgt gggttctatg cggcccacca cttgctgtgt atgctgtcgt 20460 ttacaaaggc ggttgactct aaggtacgcg agatctattt acttattagt tgttgtgatt 20520 agttgaatgt gatgcttctc taatggttga aaccccaagg ttcagcatct tgtcttgtga 20580 gtcgaatata tgacaccatt gtgcgacctc tcaaatcatg gcgtccaacc ttggcttaat 20640 ggcatcgtta tcaccatcaa gggactgcac ttgccacttg cagtgtctcc attatgcaac 20700 atgcatccgt cagtggaatt tagcagtggc cagtgttata ctacccggcg accatgcatc 20760 tattatgcgt tgcgccttgc gccaccacct aggagtgtat gattgattga taataactta 20820 tacagaatat tccctcaacc attatgcact gctcgtgtgc tcttgaatct accgttttgt 20880 tttaggataa gggcgctact agatagggcc cccggctgat tttgattact taatccagca 20940 tccaatgcat gtgatgttga atttattcgg ccattgagac acgccttcac atataagtta 21000 atgtatttgt ccttacttca atttcttgca cctcgtagaa gagtgcatgc atgtgaaata 21060 tcactgtagt tcttcagccg gtcgtgtgaa ctcacatgac acatttgctt tgattctgat 21120 gccggcgaaa ggtagggtga ggctccatgg agactgtggt ggcaagcccg gccggtgggg 21180 agccatggaa gaagtgaaca acaagcatcc ccttttgatt tgttaagcat ctttgcatcc 21240 acatgatttt cttcgacaaa gtctatataa tgtttgaata ataaagtgtc atcaaggcaa 21300 gcatattagt gccgtctaaa tagatgccta aaatacatga catgtaattt ttattattat 21360 cttttacaac tgaattgtgt gctagtaaat agtattcaat gagtcccaaa ttcatccttt 21420 gcccattgca atgagagatg tgacctctgt tttgtcatct ccatacacct ttgtccatca 21480 ggtgcttggt ttgccatctt ctcaatagcc attccagcat aatcatcaac atgcatgtgt 21540 agtgcaggtg gttttggaat cctacttttt acccaaacag ggtcataaaa tggttcacgt 21600 ttctggtgcc ttatttcttg atcagcacca ctactatgct tgtaaccatt tgcaccttca 21660 tctgcatgct ttttttcaaa atttggatta acataaggag gacgcatatt ggctgccttc 21720 tggcacacgc tggcacaggc tgcatatctt gcctatcttc ggcaatcttc tagcacccat 21780 tgatgccctg aagggcttag aataaggagg aaccttgttc aatgttttac cttctctcca 21840 tttatatatc tcgtcatagc aaagcagatt agggcgatga aaaaagaacg atctatatag 21900 atgtaaactt taaactgtaa cattataaaa tttatagttt tagtacaaag ctttaaactt 21960 cgattttata aatgttttgt ctttaggttc aaaactttac actctaaaat caaaacataa 22020 caaactttgt actctatgtt aagaatcttt aaacaacatt acaagaaata ttactaaggc 22080 ttcaaaactt tacattaaag aaattatcaa actttgaaac aatcacatcc aaaaatatat 22140 acctactgct aatttcaaat ttgtcgctta caattgttaa tagtatttaa actacttcta 22200 tacttatagt tctataaact ttaaactatc acattataaa ctttgtagta atagaattgg 22260 gaacttttac cctaatttta aaacctttat acgtctatct cattttaaac tttttagtga 22320 catgctatga actttataca ctcttgaact aaatcttttt gttatattgc atgcttttat 22380 ttgtaaggaa aaccttatat cttttggcta ctggtcgtgt tttgcagggc cttgacttga 22440 acacaacggt tatccgcctg ggcgagatta gagagaggat ctccaaattc attctggagt 22500 ggatcatcca cccagatggt ccgtttcatg accctgctgg tggcctcatg aacaatagtt 22560 atattgatga tcacaacaac aatagttata ttgatgatct gtgatgctat tgtaagggtg 22620 catttgtcct agctagctgc tcctatgcat atatgcataa ttgtgtactg ttaattgtgt 22680 aaacaactaa aaatttgaac tttgtgttga catatttgaa aatttgaact taatttagtt 22740 gatctgtgtt gtgttgatgt attatgggcg agtttggatt atatgcgaac agtacttttt 22800 ttttggtgat tatcagcttt gtacagacgt gtgttattaa cacgcgtcag taataaatat 22860 tgtacacaga cgggcgttat attaccacag acacttgtca gtacagcgtg tctctaacaa 22920 attccaatta cagacgctta catgcacgtc tgtaataaat ccttattaca gacgtagtat 22980 tgcagacgct ccttggagcg tctgtgaaat acctgaacac acgtctgtaa taagcttttt 23040 tcacatagtg 23050 // ID Copia2_HV repbase; DNA; GRAS; 7683 BP. XX AC . XX DT 06-FEB-2003 (Rel. 8.01, Created) DT 06-FEB-2003 (Rel. 8.01, Last updated, Version 1) XX DE Copia-like LTR retrotransposon. XX KW Copia; LTR Retrotransposon; Transposable Element; Bianca; KW COPIA superfamily; Copia2_HV; TREP1161; endogenous retrovirus. XX OS Hordeum vulgare OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Hordeum. XX SQ Sequence 7683 BP; 2369 A; 1616 C; 1480 G; 2216 T; 2 other; tgttaggaat taattaaatg tattaattaa tgggataatc cctgcgttgc cggttgcctt 60 gttttagcaa ccgttccttg taaaccgcct ctgtaacagg ggtataaata cccacatctt 120 caatcaatga aaacactgtt ccatcattct gtcactttca ctactttaca cgttatcagc 180 gctcgctctg ccgagagcga cagagagcca agagaaaggt gagaatggca gggagagatt 240 tgtcctcgct tgcttttgct ttcgcacgtt tcctgcagaa agaagacagc cgcttcactc 300 gcacgcagcg ccaccgcatt gcacgtcgcc gtcagggtct tggtgcaagg aatggccctc 360 gccgccgttc cttcaccagg aaccaccgcc agaaccggag tggccctcat cgccgcttct 420 tcgccgggaa ccaccgccag aaccgccgcc gtggggccat cagcgtcgtt cctcgaagaa 480 gatgtgatgt tcccctgtga acttgcgccg ccgcctcttc ctccatactg catgcagcac 540 ggattcgggc catgccctgc gcgcacggat ggccacgtcc cggagctgcc atccccgacg 600 ccggcagcgg cagcacacac cggccccgtc ccggatctgc catctccgac accggatcga 660 gaggaacgag gcggttatcc caccatcccc atcttgaaca tccagatcaa ggttgaagaa 720 gaggggatgg aggccatggg ctcgtcgtcg tcgctccgcc ctccatcacc ggcgatacct 780 cctcctcctc cggctccgcc ccttccgctg acgccaccgc cggaagctcg ccggatcctg 840 tgctagttcg ccgctgctat ggcgcagaac cgggcggctc ttcgtggcgc gtggtcgccg 900 gacgccctgg gcttcgccgg cgcaccggag gcaagcagca gcgggagtag ccgggctgcg 960 ctgcggggcc agccccgttt tccttgaagc agccatgggg agaggaggct ggagttgtga 1020 ggtgtttggg tctgcatcgg gaagaagatg ggaaacagga gagaagtggc tgtgtggcct 1080 cggcttgctg ccttgctctc tcccttatcc atttctccaa ccggtatatg gtccaacaca 1140 ggccacgtcc actccaaact ccaagccacg ttttcctctc caaaaggcct acaagccacg 1200 tttcctcttc aaaaggcata caggccagga aataaagtga ctattagcgt tgtgttttaa 1260 tcatagtact actatgctgc aattactata ttgcactgca gattgttcct ttttatttca 1320 gtgtgatatg ttattgtatt aagaacctct ccttatcata ttcactcggt attgtactgt 1380 agtatgaata cttagattgt atattgtcta aaataaagtc tcagattatg tgtacatatt 1440 ctatataatt gcctcagcaa ttttcatttt tttagaatat gtagttttca agtacaattt 1500 ttttttaatt caaatttttg ggatcacaag gtagatgagg catctactgc attttgcaga 1560 ttatcctcat cgctgaaaga tctacatttt gccttcgtta ttttggcaaa atgactatct 1620 tcgagtgctc tcccgaatat gcgaattaat gtgactacct caaattttta caaatcacaa 1680 ggtaattgtg tgatctactg cataatttgc agattatcca ctcttgctga gaggtctaca 1740 tctagtcttt tgacaagatg actaccttca aagtgttttt gtaaaatata gtatgacaca 1800 aggtaatgga ctacgaacat ctactggtca aaaccagact atgttctcca ctactatgag 1860 atctacaccc caacggtgaa tattttcgaa gtgtcatata cataaaatga ggtctacaca 1920 taaagcatca gctatacttg aaaattttgc ttcctaaagc atttgttgta acttatattt 1980 tactctcata gtaaaactaa attatgcatg aaaataccat gcaggaaatg gctggtgtca 2040 tgcatcgtga atttcatgaa cttgaactag atggtagtat ctatttacca tgggctatgg 2100 atgcaaagat agccctcgaa agccgtaaac tcggtttcac tatcaccaca cccgttgaag 2160 gcgccgggag aaatccccac ggcagccaaa tatagagctt taagtttctt aaggcaccat 2220 ctccattcag acttaaagtc ggaatatttg atggaagaag atccactggt tttgtggaac 2280 tctctcaagg agagatatga ccagcaaaga gcagtcatgc tgccagaagc acagagagaa 2340 tggtccctca taaggttcca agacttcaaa tctgtggcag catataactc tgcagttcac 2400 aaggttaact caaaactaag gttttgcaat caagaaattt ctgaagaaga ccttattgag 2460 aagaccttgt gcactttcca cccctcgatg agggtactac aatagaagta ccgtcaacaa 2520 aaatacaaaa agtattctga gctcatatac actttacttc aggctgagaa acatgatgaa 2580 cttctcatga agaatcatca gacacgccca acgggctcaa tgccactccc tgaagcacat 2640 gctaacactc agtttactaa aaagtatggg ggcaacaaaa agaatttcaa aaaattcaat 2700 ggaaagtgga aaaggaacaa caagcagaaa agctttggtc aatctaaagg taaaggtcac 2760 ttcaagaaaa atgaccgaaa caccaactcc gagatttgtc aaagatgtgg atgtactaac 2820 catcgtacta gtaaatgccg aactcccaag catctagcgg atttatacat caaatccact 2880 gggaaaggca aacaagttca tggaaaagcc gaagctcact tcaacgcctt acaacaagaa 2940 gaaaaccttg aagctagcac ttctcaaagc gctcctaagg aaacaaggca gaaggatgaa 3000 gatcttcttg atgttggcaa catgatggtg gaatacaccc aagacgcata gagatcttat 3060 ataatctcca catcactcat ttgatgttat caactatttt attgtaataa tggatgttat 3120 aatttgtata actctaagta gaataaaagt cctacggacc aatcgtatta tgtaattcaa 3180 acataatgtc atatttatat ttgtaactgt aatatgaata ctttgtatgt atatatttat 3240 atgtgagtaa tatgaataaa gtttcatcct aaaatattct tttactctat atagatttta 3300 cgggaaaata atccaatgga agaagaatta tgtttggtgg acagttgtac cagtaacaca 3360 atattaaggg aaataaaata tttccaaact ctaactaaga gaaaagggaa tattatgacc 3420 attgacagtc gcgatgcgtc gattattggt tcaggacgag ccacactcgt tctacctatg 3480 ggtagtacaa ttgcaattga ggatgcacta ttgtatcctc aatctacacg cactcttcta 3540 agtttcaaag acctcagatc aaataacttc catttggaaa caatatctga aaataatttt 3600 gaacatttgc ttttaacaaa gagtaatggg tctgagaaac aaattcttga gaaattcccc 3660 tcactttcat ctggattata ttacagttat ataaaacccg taccacatgt tgcgtacaaa 3720 ataatttttc aagatcttga taaattcaag acttggcatg atcgcctagg tcatcctggc 3780 gtagggatga tgacaaaaat tattgacaat tctattggtc acagccttcc aactatcaat 3840 ttctcaaaat tatcagattt tgtgtgcacc gcatgtgcaa ctggaaaatt aattataaaa 3900 ccatcttatc ttaaagttaa aaatgagtca ttaaattttc ttgaacgcat tcaaggagat 3960 atatgtggtc caattcaagc actatcagga ccttttagat atttcatggt gctcatatat 4020 gcatctacta gatggtcaca tgtgtgtcta ttgtccacac gaaatcatgc tttttcccag 4080 cttattgatc aaattatcaa attaagagca aatcatccta aaaataggat aaaaacaatt 4140 cgaatggata atgccgctga attttcttca cgtgcattca atgactattg catggctatg 4200 ggcattcatt tagaacattt tgtgccttat gttcatactc aaaatggttt ggctgaatct 4260 ctcatcaaaa gagtaaaatt agttgctcga ccactattac agaattgtaa tttaccagca 4320 tcatgttggg cacatgcggt attacacgcc gcagatctga tacaaatcag accaactgca 4380 tatcatacaa cctccccgct acaactagta cgtagcactc agccaagtat ttcccatcta 4440 cgaaaattcg gttgcgcagt atacgtaccg atatcaccac cgcagcgtac atccatgggc 4500 ccccacagaa aactagggat ctatgtgggt tataactctc cgtcaataat aaaatatctt 4560 gaacctctta caggggacct gtttactgcc cgctacgctg attcaatttt tgatgaggac 4620 cattttcagg cattaggggg agaatcaaac cacaaagaat gccaggaaat agattggaat 4680 gtaacaggca ttcagtcctt agatccacgt actaaagaat ctgaaactga agttcagagg 4740 atcatagatt tgcaacatat tgcaaataat ctgccagatg catttactga ccataaaggt 4800 gtcactaaat cacatattcc cgctgttaat gcaccagaac gagtggaggt accaactaaa 4860 accactcaaa ccacaaatga gagtaagagg gggagaaatc tggttagtcg gaatatagct 4920 tctcaaaagc ctccgcggaa acagaggaaa tcaaatcctc taccagtaaa tgcaattcaa 4980 cctcaagttg aaggacacca accagatgct caacatcttg aacctagcat aaatgcgcat 5040 aaaaacataa ttgctgggac atcgggacac catggttcta ttgttgtggg aaatcacata 5100 gagtctgaag gtataaaaga aatttccata aactatacag attcaggaga atcatataat 5160 agagagactc caattgtcga catatatttc gcctctaaaa ttgctgaaac ccttcaagtg 5220 gatccagaac caaagaccgt cagggagtgc ctcaagcgtc ctgattggcc taaatggaag 5280 gaagcaattg aggcagaagt gcgctcgctc aacaaaagag aggtattttc ctcggtaata 5340 cctactcctc ataatgtatt ccctgttgga gcaaaatggg tttttgttcg aaaaaggaat 5400 gaaaacaatg aggtggtgag atacaaagcg aggcttgtag cacaagggtt cacgcagagg 5460 cccgacatcg attacgatga tacatactct cctgtaatga gtggaataac gtttcgatac 5520 ttaatatctt tggcagtaca aatgaattta tctatgcagt tgatggatgt agtgacaaca 5580 tacttatatg ggtcactcaa atcggacata tatatgaaag tccctgaatg acttaaaatg 5640 tcgaatccaa aagaaaatcg caacgcatat tgtgtaaaat tacaaaagtc actatatggc 5700 ttaaaacaat cgggtagaat gtggtataac cgattgagtg agttccttat tcaaaaaggc 5760 tactcaaata atgatgattg cccttgtgta ttgataaaga aatcctcaaa tggattttgc 5820 atcatctcag tgtacgttga tgacctcaat atcatgggaa gtacacctga tatcgaagaa 5880 gcacacaatc atctaatggc gaatttgaga tgaaagattt gggaaagacc aaattctgct 5940 taggcttaca gcttgagcat cttccctcgg gaattttagt ataccaacct gcatatattc 6000 aaaaggtttt ggaaaatttt aatatggata aatcatatcc aaccaaaaca cccatggttg 6060 tcagatccct tgatatgaat aaagatcctt ttagacctcg ggatgatgac gaagagatat 6120 taggacctga gttcccgtat ctcagtgcca ttggtgcgtt aatatacctt gcaaattgca 6180 ccaggcgtga tattgcattt acagtgaatt tactagttag acatagcgtt gcttcatcgt 6240 aacgtcattg gacgggagta aataatatcc ttagatattt acatggcaca aaggatcttg 6300 gcttattcta tcagataaac caagatatga ctatggtang atatactgat ngctgctatc 6360 tatctgatcc tcacaatgtc aggtcacaaa caggtttcgt tttcttatat ggtggaactg 6420 ctttttcatg gaagtcaaca aaacagactc tcctagcaac ctccactaat cattcctgaa 6480 cttgttgcat tttttgaagc atcttaagat tgtgtatggc ttcgcaggat gattaaccct 6540 attcaaactt catgtggtgt tggttcatta ggatcaccaa ctattatata tgaagataat 6600 gcagcctcgc cattgtctca aaatgcaaat gtggtttatg ttagaaagta atatccccac 6660 acctatattc ttcctaaggt tattttaatc ctcagtgcat tacagaaggg atggagaaat 6720 ttgatatttt cccaaattaa atcatgtgcc aatttagcag atttgttccc caagtttttt 6780 ccaaattcaa cgttccagaa atccattcat ggaaattggt atagagatga ttcccgagat 6840 ttgcaaagtt cagggggaga aatctccctg aaaatatacc cgtttaatta tcatcaggta 6900 atgaatattg tactcttttc ctttatgagt ttttccaaca gggtttctca tataaggttt 6960 ttaacgagac aattaaatac aagtattgat gcatgccata tcatatttct ccttatattt 7020 ttcctactag gttttaaagg agttttttat ggcacatctc attgcactct tttcattatg 7080 agtttttttg acattttctc tcataatgtt tttaatgaag ccatatctta tcaatgatca 7140 tatatcatac tttctatttt ccctatcggg gttttaaagg aagtactcaa gacatatatt 7200 gttctctaaa ctcaaaaatg agttttatcc ctatataaag gttttctcaa atgagttatc 7260 atgaggcaat aatcattata tgttgcacaa ttttttcctt attatttttc cactgggttt 7320 aaaggagttt tagcaacata tctacactat tgtccttata ttttttccac agggtttttg 7380 gaggagactt taaagattat acaacgactt ttcaagatga agatgaggaa cattcttaaa 7440 gagaaaaatt tacaaggatt attatttatc aagatgatgc acatttacac agacaagcat 7500 ggattaggga gagtgttagg aattaattaa atgtattaat taatgggata atccctgcgt 7560 tgccggttgc cttgttttag caaccgttcc ttgtaaaccg cctctgtaac aagggtataa 7620 atacccacat cttcaatcaa tgaaaacact gttccatcat tctgtcactt ttactacttt 7680 aca 7683 // ID CINFUL3_LTR repbase; DNA; GRAS; 3985 BP. XX AC AF090447; XX DT 02-AUG-2007 (Rel. 12.08, Created) DT 31-AUG-2007 (Rel. 12.08, Last updated, Version 1) XX DE LTR retrotransposon (long terminal repeat). XX KW Gypsy; LTR Retrotransposon; Transposable Element; CINFUL3_I; KW CINFUL3_LTR. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-3985 RA Jurka J. and Obukhanych T.; RT "CINFUL3: Gypsy-type sequence from Zea mays."; RL Repbase Reports 7(8), 664-664 (2007). XX DR EMBL/GenBank/DDBJ; AF090447; Positions 201391 197407. XX CC This sequence is relatively old: LTRs are ~95% identical, and the CC 5' CC LTR has an extra indel relative to 3' LTR. XX SQ Sequence 3985 BP; 1209 A; 737 C; 839 G; 1200 T; 0 other; tgaagacgtc acccttcgct cgatattcta cagtatccaa aaacacttta ttttttcctt 60 ttttattttt gaaggaatta attgtatcag tcaacatatg atttgtgtca tagatgctca 120 cataaattgt gcttgcatac ttctattttc tatgacatgt gagtgcaggc tatgttggtt 180 ctagttttat gacctacacc taataaacca tcgaattagt aacaagcttt ctaatttagt 240 tagatttaca attttagaac atgcactttg tcggattcta cacattgaag gaaaatgcaa 300 tctattggac taagatacga gtccaagtga cgcaccaagt gctctctgaa caaaacaatc 360 gaatggcatt ggccaattgg tactttaatc ttggttcttc acttttacaa ctaaacaacc 420 caaatataaa tattatttga gtgggtttgg cgttcatcag caacattccc atctttagta 480 atgctaccta gcataaaagt gagctagcac gttaggcagc cgattccatg caatttttac 540 gtccctcaaa aaaaattctt tgatatattt atcgtataat aatttaaact ttacgttggt 600 cataattttc agccaataag ttcaataatt tggtgtttgc catatcgaaa ttgttactca 660 tagggtccag ttgatttaat gaccttggtg ttgttaagtt cacgggttca tagaattata 720 catgtctaca atgctacatt tgtgtgcaaa atttagtttc ttgtaaaaaa tacatgtgtg 780 gaatatttac caaaaaatta taatgtggta tgaatttgtg tgagcatgtt tggacacagt 840 tataagttta ctcctaaact tatattatgt tttgcttcgt gcaagtacaa ctgatttgaa 900 tattcatggt caaagcatgt gtccatcact atatcaaatc aacataccat atatgtatgt 960 actcaacaaa aagcgcaaat agtcacatct atcttatata tacaccctca cacacccaaa 1020 caataacatt caagaggttg ggctaggaca tcattgggat gatgaagtaa tattgtattg 1080 tctatgtatt gaccaagcat gagtttataa ttacgatttg atgttttcaa ttatttatat 1140 gatgaacata gttcaaaaat atatcgagat aaatgtcaat caatatattg attatttcta 1200 ggaaacacat gccggtatga gggcaccatt atcgattaca tctcatatgt aatctaaaag 1260 atggcacctc caacgatggg ttgctgccac gacaaggcag ggttcatcaa agagaactgg 1320 ctgtatggta gcaattgttg ctgctgtagg aaggcagtga ccaatgggtt aggcactgct 1380 agtggattaa gtaactgttg tcgctgttgt aggtacgcag cagagttcga cacagtcagt 1440 tggttgaatg gaagcagctg ttgcaagtag gcagcagggt ttgccacagc tagctgagtc 1500 agagctggta caatctgttg cagcaattgt tgttgcaggt atgtaggtgc attacccaca 1560 acgagagggc tagatgaaag cagttgttgc tgttgtaggt aggcggcagg gttcaccatg 1620 gctagttgac tgagcgctgg cagaaactgt tgcaattgtt gttgttgttg gtatgcagct 1680 acgtttgcca gagcaagtgg gttggatgca agcacctgct gttgcaagta ggcgacaggg 1740 ttcaccacat ctagttggct cagtgctggt aggaactgtt gttgctgttg tgttgcgatg 1800 gtttgtatgg ttagatgtgc caaggattgt tgttgcaatt ggttaattgg ttgttgtaag 1860 acgctcgccg caagcgcttg ttgtagcctg taggcttgca cagctaggtg ttcgaagccc 1920 attgaagtaa ctggtcggag gaactgtggt ataatggcac taggagcaag tgagcattgt 1980 ggaataatga acgcatttgt tgcgctcaca aaaagggcaa gaagcgcaag gagggctaat 2040 atcttggtag ccattgttgt taagtcgttg ctaggtagct tcgcttggtg tgtttctgaa 2100 tgctcaaaat attatgggtg atggattaac tactgatttg ggagctattt atacaggtga 2160 ggtctcaaat atattttttg gattttgtct tttttccaaa caacagataa ggtatagatg 2220 atatggcatc tactcgattt cgacatttag ttatccgctt tatcggatta tatggtattt 2280 gctggaaaga tactttccac tacctacaag aaaaggtgtc attttatata ggaattcttt 2340 tcatctacgt ggaatgacat gcatgatctc ttcaccttta cacatgtgac aaccttaaca 2400 tgatatgaat atgtaaagtt tgctatcaaa acgtttataa atggatattg ttgtagttat 2460 gttctgatgg ttaaacaagc atagtagtta gatgagaagt gatttgacaa tgaaggaacc 2520 aatactacaa gattgaaact aattgaaatc ctagaatgca tagatgaatg cacacacata 2580 ggacgaccaa aattagaatg attatatcta aatgtggcaa ttggcgcaca cctcaagtgt 2640 tcttgattac aacttgcttt agtattgtct aaaaaaaatc gtgtataact tttactgagt 2700 tcaaaatata ttctgatgac aaaaaagcaa taccaagata tatgtcatga ataattcaat 2760 ggaacatatt tgatcttcaa aatttggata gattttctag agagtatgtc aatttaggga 2820 aaactagttt aggaaaaagg taggacacgc aacaaactag agcggaagaa gtttctattg 2880 aactgtaact gttgattcaa atagatgtat acctaacttc aacaaatgga aagtaaaatc 2940 ttcccatacc ctaaatctaa tagagaaatt ctccatggct taacgggtat cagaccccat 3000 tgacacctct actcctaacg ctaacaacat tcttcacttc tagcgtatgg catcgacaat 3060 tgcttagttc caacatgcca aaactaacac taaacaacca ccattaggca tgcatcaccc 3120 actatgcatt atcgtggatc tatgcaggat cggatcctcc atcactattg tagttctttg 3180 tggtagagga taattggtga caaacaggca cctacaattt tgtgttggtg acaaacaggc 3240 agctgcacaa agaaaagact ttagacggtg gcatcttttg gtcatccaat tgacgagagt 3300 caaggctgca gcacggtagc agcaattgcg ctgcatgctt ttatcccttc cgctgagagc 3360 cttgtttgta gatggatgca gttggaatct ttatctctgc tctgcctgct gtggtgctct 3420 gcctataaaa gctgagggag catagttgac cgggcccctg acaccaaccc tagccaacac 3480 gagaagctgt cgtaaaaaga aaaacacaga gaagccgcca ggccaccacg cctccagcca 3540 ggagagagag atgcacgcag gaccgaacgg acgaacagtt ccaagcgcca aagccatgag 3600 agaagtccaa gcccaccaca agccacgcac aatagaggag gacctagcag cttccacaca 3660 acagttcgca cgtgcaacat cagccagcat ccgcattcac ctaacaacat ttcccctaca 3720 aaaccccgga tcatttgctt tcagtgctta ctggaaaatc tgatggttat tccggatgac 3780 gaagtcgtga accatacgct tactatgctt accagaagat cggatggtta ttcggatgat 3840 taagccccag accatgcgct taaggtgcat agcggaacat tcgatggtta tgtcaggttg 3900 atttggtttg ataatctaat gtacgctcta gattaattaa atacttaaga tctgatggtt 3960 atatcagatt gaattaataa tacca 3985 // ID ARS_TA repbase; DNA; GRAS; 371 BP. XX AC X59858; XX DT 08-NOV-2002 (Rel. 4.3, Created) DT 08-NOV-2002 (Rel. 4.3, Last updated, Version 1) XX DE Triticum aestivum ARS-related dispersed repetitive DNA, ARS_TA. XX KW Repetitive sequence; dispersed; autonomous replication; ARS_TA. XX OS Triticum aestivum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RP 1-371 RA Dobrzanska M. and Szurmak B.; RT "A moderately repeated DNA sequence of wheat and rye genomes."; RL Plant Mol. Biol 18(3), 603-605 (1992). XX DR Genbank; X59858; Positions 1 371. XX CC repeat_unit 141..147 CC /note="ARS consensus 5'-domain" CC repeat_unit 223..229 CC /note="ARS consensus 5'-domain" CC repeat_unit 265..271 CC /note="ARS consensus 5'-domain" CC repeat_unit 289..295 CC /note="ARS consensus 3'-domain". XX SQ Sequence 371 BP; 127 A; 66 C; 53 G; 125 T; 0 other; aagctttagc atgatccttt attctaaaag gaaaaggtgg tttctcaata taagcggtag 60 aacaatagga tcaacattat aagtaatagt tttttcttca actataatag gttctactcc 120 tttacttcaa tgggaggatg atatttaaac cacttctcct tagggagatc acatgagtag 180 caaaagattc gcagaaagag ctactatctt agagtcaagt ccatatttag tgctaaattc 240 atgaaaagca tcagtatcca taaaatattt aacacaatca aacttaagat ttatacctga 300 ctccttacct tcttgagttc ccaatcttca gatttgcgtt taattatttc caataaatct 360 catttgaatt c 371 // ID MUDR repbase; DNA; GRAS; 4942 BP. XX AC M76978; XX DT 15-JUN-1999 (Rel. 4.05, Created) DT 15-JUN-1999 (Rel. 4.05, Last updated, Version 1) XX DE Zea mays transposon MuDR mudrA and mudrB genes, complete cds. XX KW MuDR; DNA transposon; Transposable Element; KW Mu autonomous DNA transposon; TIR; transposase. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-4942 RA Hershberger J.R., Warren A.C. and Walbot V.; RT "Mutator activity in maize correlates with the presence and RT expression of the Mu transposable element Mu9."; RL Proc. Natl. Acad. Sci. U.S.A 88(22), 10198-10202 (1991). XX RN [2] RP 1-4942 RA Hershberger J.R.; RT "MUDR."; RL Direct Submission to Genbank (15-NOV-1991)R. Jane Hershberger, RL Dept. of Biological Sciences, Stanford University, Stanford, CA RL 94305-5020, USA. XX DR GenBank; M76978; Positions 1 4942. XX CC It has 215 bp-long terminal inverted repeat and it encodes two CC proteins in both orientations: CC mRNA1 join(169..332,429..545,691..2750,2830..>3145) CC /gene="mudrA" CC CDS1 join(450..545,691..2750,2830..3145) CC /gene="mudrA" CC /codon_start=1 CC /protein_id="AAA21566.1" CC /db_xref="PID:g540581" CC db_xref="GI:540581" CC /translation="MDLTPSFNSLDSNGIPNSPDVDPALGETGGSEGLQKIDGESQLD CC WDSIIVSDVLDDEGRVQVPTENEIYFNLGLNKGDEAANNRFSGSGTNCHAQGSLDTDN CC EDHHADQPCQDYIPDEKRVVYNRMNPSMQPGCLFPNMKEFRIAMRQYAIKHEFELGIE CC VTSTTRYVGYCKGGDCPWRIYAREEKKGLPTIVVAVLDDVHTCTSSGRRRTTTPTCGW CC VAFHAKPLLMKKPQMGAKELQQTLQTTHNVTIGYDTVWKGKEKALRELYGSWEESFQL CC LYSWKEAVIAVMPDSVIEIDVILEDGKYYFSRFFCAFGPCISGFRDGCRPYLSVDSTA CC LNGRWNGHLASATGVDGHNWMYPVCFGFFQAETVDNWIWFMKQLKKVVGDMTLLAICS CC DAQKGLMHAVNEVFPYAERRECFRHLMGNYVKHHAGSEHMYPAARAYRRDVFEHHVSK CC VRNVHKIAEYLDQHHKFLWYRSGFNKDIKCDYITNNMAEVYNNWVKDHKDLPVCDLAE CC KIREMTMELFHRRRRIGHKLHGIILPSVLAILKARTRGLGHLSIVKCDNYMAEVRDST CC NCMTKHVVNAELKQCSCEEWQHTGKPCQHGLALIIAQDSRDVGMENFVDDYYSTERFK CC IAYSRRVEPIGDRSFWPSVDFASGVFAPIARRGLGRQRKNRIKSCLEGGSARNKSTNE CC NEKTKKRLKRQYTCPNCGELGHRQSSYKCPLNGTKKRKRKPRINTTKNWIPKELRTSS CC QNVPVQPDVAEEVTEQELEDPQPETEQLGLALFQPLGAQITEQEADEPAEQAPPASPP CC PTRKWLVKKITPKKRLRISAQQKQY" CC mRNA2 complement(join(<3782..4225,4298..4511,4629..4780)) CC /gene="mudrB" CC CDS2 complement(join(3782..4225,4298..4477)) CC /gene="mudrB" CC /codon_start=1 CC /protein_id="AAA21567.1" CC /db_xref="PID:g540582" CC /db_xref="GI:540582" CC /translation="MDCPPSKVVADAVEAARAAAVAASEARCAVFVAEKEAKAAVQFA CC AIAVEKVEAVKASSNVDLVDFKYHVSIKNSLRYAIQEMRRQSKLLHSVQKLCSTIPEV CC QGGKIGKVRGFLEHVCKELDKTSSICEEDLETKNPTWDLYDNPSVDDEHPLDDDELGD CC GYSTEDPELWEMVFDDFKWEEIKANVSFEEHYRVINYRFEEINDRNM". XX SQ Sequence 4942 BP; 1452 A; 1059 C; 1137 G; 1294 T; 0 other; gagataattg ccattataga cgaagagcgg aagggattcg acgaaatgga ggccatggcg 60 ttggcttcta tgatctggag acgcagagga cagccaatcg ccaaaacaga aaggtgacag 120 cgcttggagc tccttaaaca ggtattactc tcctgtcggc gtttaccgtt cgcccgcgca 180 cacgccgtct ggcatactcc tcttgtcacc gtctctcctc taaatgctct ctggttcggc 240 ctgctcgcgg cagttggcgt actcctctcc tcgccgaatt ggagtgttct cgggagctgg 300 cgtcttccta ctgcggctgc ttccggtttc ctgttcgtga gttctcctcc tatcctttgt 360 ctcccatggc tatcgtatgt gaaccatggc tatcgtgttc ccctcaccga acccggttgt 420 gaaattaggt tttctctgat tttggatcca tggacttgac gcccagtttc aattcgctag 480 actccaacgg cattcccaac tcccccgatg tagatccggc attgggcgaa acaggtggca 540 gtgaggtgag tttaatttag gtacattgtc ttcaatttct aaaatagtgt tggaagactg 600 ctcagtttta gttgtaagac tgcccatggt cttcaatttt taaaacagtc tcgcttatgc 660 ttggaggctc ctacattgtc tgtaatatag ggacttcaga agattgatgg ggaatcacaa 720 ctggactggg attcgattat agtatcagat gtattggatg atgaaggcag agtacaagta 780 cctaccgaaa atgagatata ttttaatctt ggactcaata aaggggatga ggctgccaat 840 aataggtttt ctggcagtgg tacaaattgt catgcacagg gaagtttgga tacggacaac 900 gaagatcacc atgctgatca gccttgtcaa gactacattc cagatgaaaa gagggtggtg 960 tataatagga tgaatccttc tatgcagcca ggttgtttgt ttcctaacat gaaagaattt 1020 aggattgcta tgcgacagta tgcaataaaa catgagttcg agcttggaat tgaagttact 1080 tcgacaacaa gatacgttgg atactgtaag ggtggtgatt gcccgtggag gatctatgca 1140 cgtgaagaga agaaaggatt gcctactatt gtggtagctg tactagatga tgttcacact 1200 tgcacatcta gtggaaggag gaggactact acgccaactt gtggttgggt cgcattccac 1260 gctaaaccct tgctcatgaa gaaaccacaa atgggtgcta aagagttaca acaaacacta 1320 cagacaactc ataatgtcac tattgggtat gatacagttt ggaaagggaa agagaaggct 1380 ttgagagagc tgtatggatc ttgggaggaa agcttccagc tcttgtactc ttggaaggag 1440 gctgtaattg cagtcatgcc cgatagtgtg attgagattg atgttatttt ggaagatggg 1500 aagtactatt ttagtcgatt cttttgtgcc tttggtccat gcatatctgg gttccgagat 1560 gggtgcagac cttatcttag tgtggactcg acagcattga acggtagatg gaacggacat 1620 cttgcatctg ctactggtgt agatggccac aattggatgt acccagtatg ttttggtttt 1680 ttccaagctg agacagttga caattggatt tggttcatga aacagctcaa aaaggttgtg 1740 ggtgacatga cactacttgc tatatgttca gatgcacaaa aagggctgat gcatgctgtc 1800 aatgaggtat ttccgtatgc tgagagaaga gaatgcttca gacacttaat gggtaactat 1860 gtgaaacacc atgctgggtc agagcacatg tatccagcag caagggccta taggagagat 1920 gtatttgaac accatgttag caaggtcaga aatgttcaca agattgctga gtacttagac 1980 caacaccaca aattcctttg gtacaggagt ggtttcaaca aagatatcaa atgtgattac 2040 atcacaaata acatggctga ggtttataat aactgggtta aagaccacaa agatcttcct 2100 gtgtgtgatt tggctgagaa aattagggag atgacaatgg aactgtttca tcgtaggcga 2160 aggattggtc ataagcttca tggtattatt ttgccatctg tcttagcgat actaaaggct 2220 cggactagag ggttgggcca cttgtccatt gtaaaatgtg acaactacat ggcagaggta 2280 cgagacagca ctaattgtat gactaaacat gtcgtgaatg cagaactgaa acagtgttct 2340 tgtgaggaat ggcaacacac tgggaaaccg tgtcaacatg gtctagccct aataatagcc 2400 caagattcca gagatgtagg tatggaaaat tttgttgacg attattactc tactgaaaga 2460 ttcaagatag catattctag aagggtggaa ccaattggtg atcgttcgtt ttggccatca 2520 gttgatttcg ccagtggagt gtttgcacca atagctagaa gaggtcttgg aagacaacga 2580 aaaaatagaa ttaaaagctg tctcgagggt gggagtgcta gaaataaaag taccaacgaa 2640 aatgagaaaa cgaaaaagcg actcaaaagg caatacactt gtcctaattg tggtgaattg 2700 ggacaccgcc aatctagcta caagtgccct ttgaatggga caaaaaaaag gctagttctc 2760 aacttacttc tatatgttca atttatatta gtactcgtga actaaatgtt tgagtatttt 2820 tttgagtagg aaaaggaaac cacggataaa caccacaaaa aattggatcc ctaaagagct 2880 tcggacttct tcacagaatg taccagtaca gccagacgta gcagaggaag tcactgaaca 2940 agagctagaa gatccacagc cagagacaga acaattgggt cttgcactct tccagccgtt 3000 gggtgcacaa atcactgaac aagaggccga tgaaccagcc gagcaagctc cacctgcttc 3060 tccaccaccg acaaggaaat ggctagtgaa gaaaatcacc cccaagaaaa gactgaggat 3120 tagtgctcag cagaagcagt attaactgct aagaacaacc actgtgctca gaacaaccac 3180 tgtatttgtt gtaagactgt tatgtaggac tgctacgaac aaacactatg aaacctccac 3240 ctgtattggt tgtaagactg ctaagaacaa gcccagtgta tttgttgtaa gactgctcag 3300 ttttagttgc cagttcgttg cttcccaggt tcagttttat ttcagtttta tttcagtttt 3360 atttcagttt tattcatcag gcccagtttc agagaaacag attgcttgcc cagttcagag 3420 aaacagattg cttgcaattg tcgcccagtt cagagaaaca gattgcttgc ccagtttcag 3480 agaaatagag cgcagaaaac agataaaata taacacaaaa cagataacat ataacacaca 3540 tgaataacac tgagccatta gttcttacaa cctcatctca acaacacaga aaacagataa 3600 cactaatgtt cttacaaacg ccattcatca ggccttaaca cgacaacaaa cactacggtt 3660 cttacatcag ataataggtc atacaacaaa tatcagttgc gtccttcgga aatatatccc 3720 agacagacca aaatgacacc agaatgaaac caacccacca aaggcaacct caagtccaca 3780 actacatgtt acggtcgttt atctcttcga acctgtagtt tatgacacga tagtgctctt 3840 cgaatgagac attagcttta atctcttccc acttgaagtc gtcaaaaacc atttcccata 3900 gctctggatc ttctgtactg tacccatcac caagttcatc atcatctaga ggatgttcat 3960 catctacgga agggttgtcg taaagatccc aagttggatt cttagtttct aaatcttctt 4020 cacagatact tgaagttttg tctagctcct tgcacacatg ttccagaaac ccgcgaacct 4080 tacctatctt gccaccttgt acctctggaa tagtcgaaca caatttttga accgaatgca 4140 acagtttaga ttgcctcctc atttcttgaa tagcatatct caacgaattc tttatgctca 4200 catgatactt gaagtcgaca agatcctgtg caacaaccag atgacaatcc ttttctatca 4260 ataaaaaatt tgagtgtatg agtttgataa tccataccac attcgatgag gccttaactg 4320 cttcaacctt ctccacggca atggcggcga actgaaccgc agccttggcc tccttctcag 4380 caacaaatac cgcgcatctc gcctccgagg ccgcaacggc agcagcacga gcagcttcca 4440 cagcatctgc aaccactttg ctcggtggac aatccatccg cacaggagca gagaaaaatc 4500 ggctagggtt tctggattga ggaagcgggc ggcatgaaca cagaacagcg gctagggtta 4560 caatacgcgt taaccaaaca aggcagagat gggaatcggt ccagcattgc cggagcagga 4620 taactcaccg ctgagaagag gagaccgcaa gcagccgcaa gaggaagaag agaagctggc 4680 ggcgatgtcg acccctagag cagtccaatt cggcgacgga agatatgcga ctggtcacaa 4740 gaggagtaca agtgacggcg tgtgcgcggg cgaacggtaa acggcgacag gagagtaata 4800 cctgtttaag gagctccaag cgctgtcacc tttctgtttt ggcgattggg tgtcctctgc 4860 gtctccagat catagaagcc aacgccatgg cctccatttc gtcgaatccc ttccgctctt 4920 cgtctataat ggcaattatc tc 4942 // ID CANDYSTRIPE1 repbase; DNA; GRAS; 23018 BP. XX AC AF206660; XX DT 00-0000 (Rel. 4, Created) DT 00-0000 (Rel. 4, Last updated, Version 1) XX DE CANDYSTRIPE1 is a putative En/Spm-like nonautonomous DNA DE transposon. XX KW DNA transposon; En/Spm superfamily; CACTA-like TIRs; KW 3 bp target site duplication; CANDYSTRIPE1. XX OS Sorghum bicolor OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Sorghum. XX RN [1] RP 1-23018 RA Chopra S., Brendel V., Zhang J., Axtell D.J. and Peterson T.; RT "Molecular characterization of a mutable pigmentation phenotype RT and isolation of the first active transposable element from RT Sorghum bicolor."; RL Proc. Natl. Acad. Sci. U.S.A 96(26), 15330-15335 (1999). XX DR GenBank; AF206660; Positions 1 23018. XX CC CANDYSTRIPE1 does not encode for a transposase and it may be CC a composite nonautonomous DNA transposon. XX SQ Sequence 23018 BP; 6820 A; 4603 C; 4788 G; 6807 T; 0 other; cactatgtga aaaaagctta ttacagacgt gtgttcaggt atttcacaga cgctccaagg 60 agcgtctgca atactacgtc tgtaataagg atttattaca gacgtgcatg taagcgtctg 120 taattggaat ttgttagaga cacgctgtac tgacaagtgt ctgtggtaat ataacgcccg 180 tctgtgtaca atatttatta ctgacgcgtg ttaataacac acgtctgtac aaagctgata 240 atcaccaaaa aaaaagtact gttcgcatat aatccaaact cgcccataat acatcaacac 300 aacacagatc aactaaatta agttcaaatt ttcaaatatg tcaacacaaa gttcaaattt 360 ttagttgttt acacaattaa cagtacacaa ttatgcatat atgcatagga gcagctagct 420 aggacaaatg cacccttaca atagcatcac agatcatcaa tataactatt gttgttgtga 480 tcatcaatat aactattgtt catgaggcca ccagcagggt catgaaacgg accatctggg 540 tggatgatcc actccagaat gaatttggag atcctctctc taatctcgcc caggcggata 600 accgttgtgt tcaagtcaag gccctgcaaa acacgaccag tagccaaaag atataaggtt 660 ttccttacaa ataaaagcat gcaatataac aaaaagattt agttcaagag tgtataaagt 720 tcatagcatg tcactaaaaa gtttaaaatg agatagacgt ataaaggttt taaaattagg 780 gtaaaagttc ccaattctat tactacaaag tttataatgt gatagtttaa agtttataga 840 actataagta tagaagtagt ttaaatacta ttaacaattg taagcgacaa atttgaaatt 900 agcagtaggt atatattttt ggatgtgatt gtttcaaagt ttgataattt ctttaatgta 960 aagttttgaa gccttagtaa tatttcttgt aatgttgttt aaagattctt aacatagagt 1020 acaaagtttg ttatgttttg attttagagt gtaaagtttt gaacctaaag acaaaacatt 1080 tataaaatcg aagtttaaag ctttgtacta aaactataaa ttttataatg ttacagttta 1140 aagtttacat ctatatagat cgttcttttt tcatcgccct aatctgcttt gctatgacga 1200 gatatataaa tggagagaag gtaaaacatt gaacaaggtt cctccttatt ctaagccctt 1260 cagggcatca atgggtgcta gaagattgcc gaagataggc aagatatgca gcctgtgcca 1320 gcgtgtgcca gaaggcagcc aatatgcgtc ctccttatgt taatccaaat tttgaaaaaa 1380 agcatgcaga tgaaggtgca aatggttaca agcatagtag tggtgctgat caagaaataa 1440 ggcaccagaa acgtgaacca ttttatgacc ctgtttgggt aaaaagtagg attccaaaac 1500 cacctgcact acacatgcat gttgatgatt atgctggaat ggctattgag aagatggcaa 1560 accaagcacc tgatggacaa aggtgtatgg agatgacaaa acagaggtca catctctcat 1620 tgcaatgggc aaaggatgaa tttgggactc attgaatact atttactagc acacaattca 1680 gttgtaaaag ataataataa aaattacatg tcatgtattt taggcatcta tttagacggc 1740 actaatatgc ttgccttgat gacactttat tattcaaaca ttatatagac tttgtcgaag 1800 aaaatcatgt ggatgcaaag atgcttaaca aatcaaaagg ggatgcttgt tgttcacttc 1860 ttccatggct ccccaccggc cgggcttgcc accacagtct ccatggagcc tcaccctacc 1920 tttcgccggc atcagaatca aagcaaatgt gtcatgtgag ttcacacgac cggctgaaga 1980 actacagtga tatttcacat gcatgcactc ttctacgagg tgcaagaaat tgaagtaagg 2040 acaaatacat taacttatat gtgaaggcgt gtctcaatgg ccgaataaat tcaacatcac 2100 atgcattgga tgctggatta agtaatcaaa atcagccggg ggccctatct agtagcgccc 2160 ttatcctaaa acaaaacggt agattcaaga gcacacgagc agtgcataat ggttgaggga 2220 atattctgta taagttatta tcaatcaatc atacactcct aggtggtggc gcaaggcgca 2280 acgcataata gatgcatggt cgccgggtag tataacactg gccactgcta aattccactg 2340 acggatgcat gttgcataat ggagacactg caagtggcaa gtgcagtccc ttgatggtga 2400 taacgatgcc attaagccaa ggttggacgc catgatttga gaggtcgcac aatggtgtca 2460 tatattcgac tcacaagaca agatgctgaa ccttggggtt tcaaccatta gagaagcatc 2520 acattcaact aatcacaaca actaataagt aaatagatct cgcgtacctt agagtcaacc 2580 gcctttgtaa acgacagcat acacagcaag tggtgggccg catagaaccc acaagtgttg 2640 tccatacctt gttgtaggca ctgcgatcat atgatcaaac atggttacta atataaataa 2700 aacactaatt aacaactaga agtgaagcac tactaactgg aaatttgggg acatgagtca 2760 acttgaattc tgtcttcctt gtcttggcct gatagttggc ataggccctt cacatacaag 2820 agttgttaca acattagttg gactcaataa catatttata agaaaggggc aataataggt 2880 tagaaagtac tcactcatct atcacagaga ccaacggact caaatttgtc ttcccgcctc 2940 tattggagtc aaggtacaac accttgtgcc agctaggaac gatgacgaca gcaatccagt 3000 gattaccaga gttatatgca aaccccacat attttttttg gttatattcc attaggcatc 3060 tttccagata cgccacactg taatccctat tacttctcag ggtatcaatt ctcaatggct 3120 ctggatcaag aagcgcaact ggcagagatt tctttgtagc taccgcaatg aggtatctag 3180 gaataaagaa gcatagaaaa tcaatttagc aagcaatgct aacacatgaa gagcattcct 3240 agctacaaaa atgaacatgt ctaaaagaga agaaattgta cgcacaatgt tatcacgcga 3300 agaattgcta catccaatga atcgaacgtg aggaggtcaa acacatcttc aaatcccaca 3360 gtgagaggca catattggcc gtcaagcaag aaaaaatggc tcttcaccct acctattata 3420 ccgatgtttc tccccattgc acatgcattc atgtagtaga tatgaagttc agcacactta 3480 ggacctgcct gcaaaatttc ttcttctgat agcattggct gtccaaaatt gaacttggag 3540 ttgggacgta tcaataagga atcctcaggc gtactcctag acgatttggt cggttccgcc 3600 tgctgctgct gcttgccacc cacctgctgg tcccgtttgg tatttttact cttgtgtgct 3660 ctagaggatg cgacagatac agctggacca tgtgtggaat tgttagtttt tttctttcct 3720 tctgcaagct ccttggaagc acattttcct acaatagggg cactctcata tttctcgtcg 3780 tgtgaggatg aaactttgca tgccaagtcc tttagagtga ctttggctga cctcccaggc 3840 catgtaggtt ctaaagagct tttactaggg gcctccttcg gtgatatcac aatgccactc 3900 ttactccact ggatccaggt gaacaaagct tctccaagag ttgttatctc atcatttggt 3960 ggcggagtca acacaaagct ctcatggccc ggatgtacaa aatcaactaa tacaacaaca 4020 tatccatcct gtataggaac tgaatgtaac acagttcggt ttgggaatac ttgacccttt 4080 gctacctcca ccggataacc tccagagttg cttacaagtg tacaatatgt tggctctgtg 4140 agaagatcca caggatttgg atatgaattg ccatttccac caggtccgtc caactgtaca 4200 ttgttgcaga ccgcatcagc gcctgaggca aagctgttgt ccttagcacc catagaggga 4260 agggtgttgg agggcaggtc aggcaaatta gtgttggagg gcaggtcagg caaattagtg 4320 ttggagggca ggtcaggcaa attagtgttg gagggcaggt caggcaaatt aactccttgt 4380 gcacgtagca tggcaatgac atctctaagt acctccccgc gaatttcttc tttaatggca 4440 tccgtatcca catctgaacg cttctcttcc tatacatgtc ctcgtaattc agccaaaact 4500 tccaaccaaa ataactagaa acaccgcgca tgcgccctgt ctgttctttg cccaagacct 4560 gtgagagcac atctttatcc ctgaccaact tgtttgtgag ccctaaagac tcaagttctg 4620 cttgtttctc tacaacttgc tgagagaccg cttcagctga cttagacaac cattgaatct 4680 tagggaaacc ttcaggcgtc ataaccaact taccatgtgc acgcagataa ttcctagggc 4740 gaccctcagg acatttgtgc caaggattac tgaggccttt ggcggctaat tccaaatcct 4800 ctttcctcca ctttcgaagt gctgtagcat atcctcctgt ccccaggcag tggtcattct 4860 tgttcttcgc ccgaagcttc ttgtaaaact cacttctttc ttttgcttca tcggtctcct 4920 gtaggctcac aaatgtttcc caatcttcaa gctgaatgta tgggtgcttc ttcaagggat 4980 ccaaccctgt attgacaaaa ttgcgtacta ggtcgctttt gtgggttctc caagatttgt 5040 ttaccatcct catcagcatg ttactcgcct tagcctgcaa tggttcttca aactccaacc 5100 aaggttggac ataatcctga aataatttct ccctttgtgt ttcagttagg gcatcaaatg 5160 aaagcaaggt caagggcaac ctttgtctag caatcaaacc agcaagcctc ttcatcctcc 5220 tctcggccct cagctcagtg ggcatcccat tctctgtgat ctctctgacg actatcttgt 5280 cggttggcca ctgtgccggt ttcctgtttc tccggcggca acctggaggt tgagatgcct 5340 gcacctcact ctcttgctcc ctgcagtatc atgtccatat tggccctctg cattaagcat 5400 cactactccc tccctcatct gatgcattgt aattagattc tacgtcggca gatgatggtg 5460 cgcgcccgtt atcaaaatcc tacaaaataa attttagtaa ggtttttagg gaccatgata 5520 caactcgatc ggtcatgtaa gagtacctag ctagtcacgt atatcacaaa gcaaaagcat 5580 accattcaga aagggctctc tgtgcgtagg caacagccac cactaacacc aataaccacc 5640 gccttttgtt cgttgccgta gattgctgca aatagcgagc aaattgagta acttagttgt 5700 aaaaacagtg gtactacttg gtaaaacagg gagatgccga tgctgcgtac tttggagccg 5760 ctcggtgttc tgcgtcgtgg cgacaacggc gatgtcggag caggcaaaga acaaggcagt 5820 ttcctcgtcc ctgatgctcg tgtactgctg cgggcgaggg cggacagcgg ttccacaaga 5880 gggcgagtgt gagaatccaa gaagtgggcg gcgtgggcgg gatgtcggtt cgtggagggc 5940 gacggcgagc ttcagaagcg ggcgcgcgga tggctgttcg cgaggtcgca ggccggggca 6000 ggcgtggaga ggccggggct cgccgcttcg cggagatgtg aagttctcct atccagaggg 6060 gaggagccgc gaagctagcc gggagtggag actccgcgag ctccccgtac gtccaagcgg 6120 ccggaggaga cgcgtcctcg ccggatccgt tgagagacga cggacggtcg cgcgatgggc 6180 gggggtggca gcggaggcgg cggctggtaa ggggagcgcc gagccgggcc gggttgtggg 6240 aggtgggggc acccggtttc tagaactctc tgtttgtgac aaaaggacga gttttttttt 6300 gagtgccgag cgcgggagca ctgtggagtt agagcatctc gttggcaaaa aaaaatggca 6360 aaatgagcaa aaatgcatct ccaaccgtgt ttggcaaagc aaattaacac gcttggcaaa 6420 tttatgagcg gctgccggac tcgcttgcca acgcgtgatc cctcttcttc tttccctttc 6480 ccgggcggca agtgaaactt ctgcccgtcg tcccctcgtt gttcctggca cagaccggcc 6540 gacattgttt gaaggaaact ttgcactggt gcacagaaac tttctattgg taaacaataa 6600 acgtttcacc ggtataaaac tttctattag cgcagacaag aaagagcgca ggaaactttc 6660 catttcacca gtataaaact ttctattagc gcaggaaact ttccattgat aaacaataaa 6720 cttttcaccg tatacaagaa actttgcgca caagaggttt tgttaagttt tggcaatcat 6780 caaatatttg acttgacttg ccatcctttt tacttagatt tgccaaacag tttttgccaa 6840 actccgcgtc gccccacact gatcacggtg gggaggccga ttttttttta acaaagccgg 6900 gaggccgatt aggtagacga taacagtctg ggcttttttt agggacagtt cgggcttttt 6960 tatatatatg gtgagaaatt gagaggtggg gaaaaattaa acggtgaggg agaaaaagaa 7020 gacactgtat tgtgggcctc agacttaatg ctaggataat gagcgtgatg tgtttttttt 7080 taaaaaaaaa gggcaaccac gatattagat ctttgaaaaa atctggcctc acttgagcac 7140 aaaacatttt acaaattcat tgagccaaaa tgtatttgga acatcatagt ttttattgaa 7200 catttatttt tgaatgagcc aaaaagtatt tggaacatca tagattaaaa aaaacgcata 7260 ttattgttat tttgagttct acccagacat ccaccatttt gatatttttc cccactaaca 7320 ttttctaaga aaaatctgtt acaagctgac tgagagtgtg tatatatata tagataagag 7380 agagtgaggt tgagttgctg gaacttagga aatctccatt tccttcttga aatcgttgag 7440 ttgaacacct tgcagtttgc atttttaaac ctgaacagta aaacataata tcagtcatat 7500 atgtatactg catttttgtc tagatggctg tattaagtgg atgaattgga ttaggcaaca 7560 aggaagtagt gggtgaatta taatgactga aagaaaaaca ggcataatga gtttgtccat 7620 aatatgttat gtacctgagg agatttatgt gtctgaactt ataaacttct tcacagcagc 7680 agttgttttt aaattctttg ggtgtctcag aatgtaattt gcaatcttct gacgatatgt 7740 gttggtatcc tccttcacaa tcgagcacag aggtagcata ttgtttattt ttgaaaaaaa 7800 aaagatatgc acttgtcagc tgtgttgccc ataagaaatg ggtaaaaaat tagaaagaat 7860 aaacataaat gtgtaaaagc aaaaaaaaaa agtacaaacc atggataagt catgcaaatg 7920 caatttcctg ccatcccaaa gctccataaa cttcatcaca tagataccac agtcaaagct 7980 gtttttttgg aaaaaaaaga taaaatagat tacatttgga aatataaaca ctatgacatt 8040 agaatctttg gatgggaagt taaaaaaaaa gttgacacaa actagtagcc tatcagtaaa 8100 aaagtttcaa aaatgcgcta ttaaagagtt tttgaaatta aatatagatg ataaagtttt 8160 gcatgtaaaa ttataaaagt ttccaatatc agaatacaaa gtttcaaaac ttggagtgta 8220 aagtttgcta ttataaaatg ttaatttaga tatatatata aagtccatag catcttagta 8280 gaaagtttaa aatgagataa aataaaattt atgaaattag gtgtagagtt ttaaaatcct 8340 aaagctttga agcaagtagt ataagtttat aaggtggttc aaagttttta acatttataa 8400 agtttatggg atgttacagt ataaaattta taatcctaga cagcaaactt tgaaatacga 8460 cattgtaaac tttatactcc tacgttgaaa actttacaac caaagtatta ggggcttttg 8520 taaaaaaaag gctagattaa aaattagaac tgtaacccta taaaacttgg tactttaaca 8580 attcatactc agaaaaataa aaaatatttt aacaagagat gagaaaactt ggtacatata 8640 gctttaacaa ttcatactca gaaaaataaa atatctttta ataagagatg agaaactttt 8700 gtactacagt gttaatcata ttgcaaaact ttgtaatggt ggaaaaaatt tgaactatga 8760 tactataaac tgtgtacagc taggtttata aatttgcact tgtaaaatga gtaaaaaaga 8820 actttaaaat tatgatatta cagaattttt actaggttca atattttact ctcagaaatt 8880 atcaaattat gatatataat tgcaggtgta atactttgaa ctatgacaat ataaaaaaaa 8940 ttctgcttga ttgagaactt tacaataaaa aaattattaa ctttcagtca tgactttaca 9000 aataaaaaaa tgtgctgtct tgtaaaatat tttgaaactt tgcactacta gttccagaac 9060 ttatcaaaga aaaaggaagc aaaagaagaa ggcagatgta tggaaaatac ccagttttct 9120 gttgcggtgc tggttgtact tgaattggga gactcaactt gtcaaacacc ttcccaaaat 9180 tgtgtcggta tagctttctg aagttgtcac actgacaaaa gtggataaaa taaaaagact 9240 ataaacaaga gtactttgaa tagttgaaaa aagacataaa tgatatgaaa cttatgtttg 9300 aaataaacca aatgaatgtg tgaaaaaaag gttttctcac tatctcgttc gtcatctttg 9360 aggtggtacc atccatttcc aaagagttaa ggatatcaaa tcgattggtc cctaatgtta 9420 gctactatca accaccaatg ttcaaatttg cacaccgggg gatcatgacc tggggcaatt 9480 gatttaaaaa atgtgttgaa ctgggactat gatgggtaag aataaaaaac tagaaacatg 9540 atccatgcta accatgttga atttgttaat ggaaaaacca atcacccgac tggagagata 9600 tgaattatat gctgaaactt caaatgtctg tgtacaaagt ttgtcctgcc atgtaaatag 9660 aaaaggatgt gtaagaagga aaggtgcagt aaaaattgtg aattaaaaaa atacatgtac 9720 aagttgaata tgataaaaat aagattagtt attgtaatca tattaccaca acatcacttg 9780 ttaagaaaca tttggatggc ttcaaatctg ggtttgcttt gtagtcggta ttgagtgctt 9840 cacaaaaaac attcataaca aatgtcctac tctgtgcctc cgacgaaaag agtctccaga 9900 caaagttgca tcaacatggt gacgtcctat ttgcacaatt gtttcgctgc aaacatggca 9960 tagaaaaaaa aagcaaaaag aacaagtgcc aagatattat caaccaaaaa caaaaaccag 10020 tttcagttaa ttaataacta tttctatttt aggttctttt catattctat tctaggttct 10080 gtttattaga aaatgcagtc tgaaccttgc ggcacatgca tgaagcacat atagataaaa 10140 atataaacta attacacagt ttacctgtaa ataacgagat gaatcttttg agcctagtta 10200 gtctatgatt ggataatatt tcttaaataa aaataaaatg ctatagtatc caaattttac 10260 tactgtctgc atgctttcca tgttgctatt tttttcatct ttttagagga tagctatttt 10320 tttcagatgc caaagttaat taccagtttt gatgtttcat taaaataaaa cacactaact 10380 tttgtcaaat tattaaatat atgtacgcct tacgcgcgtc tgggttgctt tggaaaaatt 10440 gttgttttga ataaataaag attttagttg ttaatatatt ttgacgactt taacatgttt 10500 ggtttaacaa aatatcatga gctcccgaag ggagcaagta gcactgttcc atcttgtcac 10560 caataatgca taaatgtcta ctgccccacc atgccacctc cgttagaccc tagctacagt 10620 gtcatgagcg gctgcatact aaatgcttgt gtatatatac cctctccata ctcacaaaga 10680 aaatcattta cactcacaat gcaagactca tcacagagtc caagacaatt aattatatat 10740 tatttatggt attggtttgg tccatggcac ctaggcggaa attttgtctt ttccatgcgg 10800 atcgtcatag ttcctctctt gttccattag agttccttct tcgtccccaa tgttcacaga 10860 ctataatttt ctttacaatc agcgcaatga aaaggcgcag acagaaatta aaggcgaaga 10920 gaaattttca caattaaaga taaatatttt ggttggttaa atttttggat attgatataa 10980 cacatattta acaaaaaaaa ttacatacta cacatgcttt aaaaaaggaa cacggtgccc 11040 aaattcggca aggacgaaga ctcagacacc atcttagatg taggggcaag atgatgtgac 11100 gattacgatt taataaaaaa tatcaaataa atactacatt agttattgtt tgatacatac 11160 tttatctgtc caaaaaaagt gttgttttaa aatttcagac atcttgtcta ataatccgtt 11220 ttatttaaaa tttttacata aatattatat attttgttaa gatctatttt atcattagcg 11280 atagtactaa tgatttattt attttataat ttacataaaa tttttgaata agacaaatgg 11340 tgaaacatga tttttaaggg tttatgctat tctcacttgg taaaaataga ggatgacaga 11400 tgggaccgct catttggtaa aagaatatgt gtctccaaca agttgcgctc gggatagcaa 11460 cttggcttga caaatctcgg cagtagaaac ctctagataa caacttggga aatttagcaa 11520 gttgagataa ggagttgttg gaggaggatt tttatgtttt agcaaatttt gtagggtagc 11580 aagttgaaat acaagttatt ggagatgctc taagtcatat aaaaaaaagt ccctataaga 11640 agctccacag tgcctctcgt tctagatttt tccccaaatt tctcatcccc tcatccccat 11700 catccggtgg tctctccctc acgttctcga tccccaccag ggcggcgcgg gcgacgcagc 11760 agcgacggcc ggcctcctcc tctccactcg cgtcgcgtct cgccgtgtcg accagatccg 11820 tgccgccggc tcatggtgga gtacgacggc atcccagggc acggcgcagc gggctagggt 11880 ttggcttctc cctctcttgt ccttccccac ggcctcgtcc ccggcgccag cgaccctggc 11940 acggccgatc tcgggaaggg aggcacctct ggcgcggcgg ggctccggcg tggacagacg 12000 aacgccccct caatctgcaa cggcggtacg gggccggcgc gacgtcgttg gggcgacctt 12060 gccccctgag cagaggcggc gcgggcggag cccctcccct ccccgcgtgg gggctctggc 12120 ggcgagcatc tccatcaggt ccgctccctt ttttcttgta ttaatctgtc tcaattcttt 12180 ttaggatcgt gatgccaggc acatgcttta tttagccaaa tatggctgct gaacgcagtc 12240 atggccgtgg aacttagtca caaagtgatt ttggatgtta acaaaaatag gccagccttc 12300 aaatttcagt tgaacaaata tatatgttac tgaatagtga atacttttgc ttgcaaatta 12360 tgcctgggct aaaagtgtgc accatttgtt ttacatgctg taaatttaag aacttgaaat 12420 tgagctacat gcaatcctga gatgaaatcg tttcttatca cactcctcag ggatcatgct 12480 gtgccaggtt tttttagaag atgaaattct tgcaacatgg tgcattggat aaatattgtt 12540 tattgcctaa ccaatagaaa aggagcaaga tttcaaaaaa agcttatcat gttttactcc 12600 tcgatgagct gaacaaatta gcttttcaat gcatatttta gtgtacacat atttttatag 12660 ataattataa tagttcgttt acaaaataat ttagattgat catgatagtt ttatttcctt 12720 tcctaaactg aggtaggata atacattcaa agaaacttca tgtttggata tgtgctctag 12780 tagcagtcca tcctgacata gatgaagcat tttggtatgt atatgaatat atgatgcttg 12840 tccatgttgc ttttccaaat tataatctta ttgcccgtgg taaagatgcc tgcaatacag 12900 tgggaactgt ttaatttttg gcctcggatc ttgcctttat tgtacaatgt acgatttctt 12960 accatgattg aattaaatag gtgttaggcc tgtatatggg gcttccatct gtgctgtaaa 13020 caacggcttt gtcagtgaca catttttttt atttagaagt ccaactacta acatgcggct 13080 tccaactcca tttcactatg aactcactac agttaccttt ctcatgtaat tataatatat 13140 tgctatgcac tttatactag atatagaaca aaagatattg gtccaagtct cagatctgcc 13200 taatgctatg gttaattttt gacaaaaaaa aaatcacgac atatgcaggt ttagtacgca 13260 ttgttgttgt tcattgattg aggattaatg attgttttgt caaaataaac ttgctacatt 13320 tgcaggttaa atggttattg ctattcttca ttgattgagg attaatgagg ggatgagcac 13380 tacacaacct ctggcccctg tgtatgataa ggtgagatgt ctcgattaat gtttgagatc 13440 ttcctattgc tttgcttaac ttcgacaaga aatattacta tcttcaccat tcctaatttg 13500 gggctaaaga aaaatcaggt tctaatttgg gaagcaacag ccttttttcg cattgtgatt 13560 cagtgaccct caaatttgct tcagcactga attttgttgt tttctgctag attttcagag 13620 caaaaaggtt cctttgtgga agtggtcttg gtcagctggt tgaaataata aaggcaatat 13680 ttctcttctc ttttacccaa gatttggggt actccaacag tcatttattt ttccagtgaa 13740 ctatggcatg gttttacatg attcatcaat cactattttt tcttcttcaa tttgctatag 13800 taatcgacat caaaccatgt atgagttgca gcagcctgat tccagattat agtcagtgat 13860 tttcatagtg ctatgggtgt cccaggtatt ctgtccgctc tttttagcat tgtcccctga 13920 atgatcttca tctacagttt ttatagtaat cgacatcaaa acatgtatgc tttgctgcag 13980 attgatactg aagggagcac gtcatattcc cagtcaataa taagttttag aagatttaca 14040 attcaagcta gaagcgtaaa aggtacacac cattttattt acttcctagt actatgttac 14100 tatgtatgaa agttatcatc tcctaaatgg gtatatgaac cgtggaatat catgtatgct 14160 ttactgcggt ttcacactga aggaagcaaa aacaatattg tgctcctact gaataataat 14220 actcatccaa actgcggtgt atgtatttag tagtgatgca ttgacacatc attgtttgat 14280 gatgaaatat tttctggtta catttcgatc ctgcaaaata aataggcaat gcagcagctt 14340 agaatggata cctgccttat cacagaggct tccaatttgt gcacatgtaa ttttgcttgc 14400 tcatacctga tgcaaaaact aaataatgat gatgagtcaa aaatgccgtg tgctcactac 14460 agaaaggcaa aagcttttta gttaacttgt ttattccaaa atatttttgc aaaataggaa 14520 tagtagcact ttcgtttgta ttcgataaat attgtccaat tatggaccat atacctgatg 14580 caaaaactaa ataatgatga tgactaaaaa atgccgtgtg ctcactacag aaaggcaaaa 14640 gatttttagt taaccttgtt tacctccaaa aaattttgca aaataggaat agtagcactt 14700 tcgtttgtat ttgacaaata ttgtccaatt atggactaag agcaactcca ccaactccac 14760 cagtagccct taaaactaga cccctacttt taatttgggt gctctcccta ctttttgggg 14820 ctcaactttt ttttgcttca actccaacat tagcacccaa atttgggcct ccaaacctat 14880 tccagagaga atgacataag ggacccactc gtcattgtct ttttttttct ttctcttctt 14940 tggataggaa cacaattaga gcatcaatcc ggttacggta ggggctagga ccgcgatgga 15000 ggatgtaggg gctaggacac gcgatggagg atgggggctt gggccaacaa gaatggggtc 15060 tgagggaaaa tatgggtgcc cagccgaata tggggtctgg agggcctgct ggaataatgt 15120 ttttagccta gacacctata tttagctttt ggggcttgag taggggacct gctggagttg 15180 cgaagattcg tctcgtccat ttctattaaa ctgtgcaatt agtttttttt atctatattt 15240 aatactccat ctgaaaaaat tttcaaaatt tttgggaact aaacaaggcc tacacctcga 15300 tgtccttttg ccttaaaaag attgcggttc acatgaagat tgcctcaaaa tttttagaaa 15360 atagctctgt gcaggttgct ataaagtaac atgttcagca gatgtcatgt ttaacctgtc 15420 cataccaaat gttgccttat tacgaatgtt tcctttccgt tcagtgattt cttattggct 15480 aactggtttg tacaggtttc acaggtatcc tactctgcaa gttggatatc caggatgctg 15540 gtgcatgtac tccctagagt ggtagagtgg tacgactctt gtatttcttt ggtttactca 15600 cggatcaaat ttagagctct ttatgggact ataaaagtgc tttagtcctc tctaataact 15660 tttagaagcc tggagttgtt aaaagagact aaaatttagt agcacctttt aggagctccc 15720 agtggaacca aagccttaat agcatccatc tgttctgtat tttatcgatt aagattttat 15780 ctacaatgat ggcatcccca aaccgatctc atcaccattc ccctgattct tccatttgtg 15840 tttcctgttt cctgatgccc actgcatttg cacctatagg caagtcaaaa gttgctacat 15900 ttgcacactg tttgctggcg ataaaggaag tcaaaagtcg ctacagtaca tggaccatgg 15960 agaaggaata gggaagggaa tagtgaagag aaagaggagt gcacgtggtc ctcgctactg 16020 gggacgaatt caagagcacc tgtcctggca gctgcgtctt gtctcgctgc gtcgtctcgc 16080 tgcgtcttgt ctcgctggta cgttcctgcc ttttactttt tactctaccg gatgatgctt 16140 gcactgtgcc atctttgtct ccctgggtct tcttggatgc ttgcattgag agcagcatcc 16200 gaaataataa caggggtcga tggggggccc acaaccgact agatagctct tagttttttg 16260 tcggcagaat agtcattttg gtccctcaac tattactcca ggctcaattt cgtccctaaa 16320 ctttcaaaac gactgtttta gtcctcagag tatactttta ggttcaggcc ttgtttagtt 16380 cacccaaaaa accaaaaact tttcaagatt ctccgtcaca tcgaatcttg cggcacatgt 16440 atggagcatt aaatatagaa gaaaacaaaa actaattgca cagtttaccc gtaaatcgcg 16500 agatgaatct tttgggccta gttactccca tgattggaca atatttacca aataaaaaca 16560 aaatgctaca gtacacaaaa ctaaaaaaat ttcggaacta aacaaggcct cagtttcatc 16620 cttagaacta tgaagatggt ccgttttggt cctcaaactt tgtattatga gctcaatttc 16680 attttaaaac tattaaagtg tattttatcc tttaactttt attttttaac tgaacttctt 16740 ctatgttgta cgcggaatgc tgcactattg tacatcatta gctccaacac caccaacaat 16800 tgaagataga aaaataatat ttatccaaaa actctttcat ggccattgat aattccaagc 16860 tgttattttt agtgttacct tataattgta ccatttatat atgtccaact aaattgatat 16920 ttgtgggagc aattatagtt acatcgaaca ctatttattc ttcaagaata catggatata 16980 ttgaatggat gaaattatgc ttaaaatata atgttttatt tttgaataga caaaattgaa 17040 gttggaaata aaaagttaaa tgcactttga tagtttatgg atgaaattga gtccaaaata 17100 caaaatttag ggactgaaac gatcatcttc atagttgtag gccaaaactg agcctaaaac 17160 taaagtttga ggagtagaat ggctgtttta aaaatttagg gacgaaattg agcctcgagt 17220 aatagttgag ggaccaaaat ggctattgtg ccttttttgt ccttgcaatg tatagcaccc 17280 ccgctcgacc ctcgatcatg ctccaaacaa atcaacagat ccccttcgtc ctctcttagg 17340 accttccaca gtgtggaagc gatgcccaca aaaatctgta aaaaacaaaa ctagcaccac 17400 tcggatgctg gtgcattttg attcttgaga gtcagaggtg cagaggcaat ctggctcgca 17460 cagcaaacaa aatacttctt taatgaatgg gcatgggtgc ttctacatgc atcgaatctt 17520 ttatttcaag catcgttgtt ggcatcggct caaagtggaa agatagaatt ttagcaccac 17580 ttcaagagca cactgcagaa ggccttaggc attgtttagt tccaattttt ttcaagattc 17640 tccgtcatat caaatcttgt atcatatgaa ccattaaata tagataaaaa aactaattac 17700 accgagacga attttttaag tttagttagt ctctgattag acaataattg ttaaataaaa 17760 acaaagtgct acagtaataa aattcaaatt ttttgtgaac taaaccaggt ctaagagcaa 17820 gtaatggtct tgtttagttc tcaaaaattt tagatagtcg tttcgttttt atttgacaaa 17880 cattgtttaa ttacggagta aactaagttt aaaagattca tcgagcgcat gaggccttgt 17940 ttagttaaaa aaagtttaca aaatttttta gattctaagt aatatcaaat ctttagacgt 18000 atgtataaag tattaaatat agatgcaaat aaaaattaat tacacagttt ggttaaattt 18060 gatgagacga atagtttggt cagaattgac cagacgaata tatcgatttc ctaaaatttt 18120 ttataactgg accctccagt gtgcaggcga accttgcaag cagtaataaa agtaacatat 18180 attacagttc gatagctata gtgtgtaggc ccacatagaa caagaaaaaa aatgtatgaa 18240 tagtagatgc gcatgtgttg ggctcggttc tccgttcgac acctgcgaca ctgagacgcc 18300 tgcccgtgtt tggctgcacg cgtgcctgtg tttggctgca cgcgtgcctg tgttcggctg 18360 catgcgtgcc cgtgtttggc ttgtgatgtg ggcatcactt ttcacagcag gggtcaccgt 18420 ccacagtgtg tgcctgggcg caagaggcat tcaggtgcag gcgtgcaggc ctttaatgtt 18480 gcgaaaaccg aaaatatttc ggcctgtggg ccacttttcc gtttttcgga actaaacggg 18540 cctgggccga aatttcatta ttcgggccgc actgttcacc gaaaaaactg tggtcaccgg 18600 ctcgtatata agcgtggacc ggccgtttct ctcgcgtggc cgaaccctag ctcttctccc 18660 ctctgccgcc gttcaggcgc ggcattacac cttcctcctc cagatccacc ggcggtaggt 18720 gcagatccgc cgcgaacgcg tgcagatccg gtgctcttgg acgcacagca agcgccatgg 18780 acggcttcaa cggcgacggc taccacggcg agcttcaacg ccgacgattc ttcggccacg 18840 acaacacata cgccggcgat acgtcgacga ccgcaccgcc cgcgacttcc tctccgaagc 18900 gcgtcgttcc gagtcattcg tcctcgcgcc agcgctccgc tccagcgcca acccggaccc 18960 caagccacct tgggttctcc aacatcgact tcaacgccgg cgaagggtgg tccagcctcg 19020 acgcatatgg agaaggcgga gccgacttca cttcggttcc tccgcccgtt cgcgtgccgg 19080 ccccgaacac cggtgctgca cctgtgttcc gcgcgggtcg cggcgggaca acggcagttc 19140 gagggcccgg acgacgtcgt gtcgggtccg tggagccaga gcgccctgtt cctatgggtc 19200 ctccaagcgc cccgcgttcc cgaggtggaa gacaacgtcg cttccggcag tcgcctccgt 19260 ccgacacgtt cgacgacagc gacgacaacc caaaccctag gatcccggta agtgtccttt 19320 attcctttct aagcttcttt acattccttt gatgcatgtc tagtacacac tatcgctgca 19380 cttatctctg ctgcaatgtc tatgtgttct tcctgtgcga atgtttttta cacatgtcca 19440 ttgcagcacg aaactagcag ggccaactgg acttctgaaa acacacacac tttctgtgat 19500 atttattgca tgcaattaga tttaggccag tgtgtttggg gtagcatgag caaatgggga 19560 tggaaggatg ttgctgaacg gtactatgca gcaacgggat tagttcatga caatgaccaa 19620 ttcagtagta gggtcaggca gttgaaggcc atgtggcatt tcattaacga cctgcgaacc 19680 aaattcacgg gtctcggatg aagaaacgat ggctccattc ttgcaccaga ttcatggtgg 19740 gaggacaagt gtgggggtaa gtgccactgg ctcttccagt tacatacaat ccatgcagta 19800 cctacaattg caacacttat gcacattttt acaatgcaga aacatcctga gtggaagaag 19860 ctcaaggatg ggtggcctac gtacctccca cagctggacc gcatgttcag tggcgtagca 19920 gtcgacggaa caacatcgta cgcttcggga caacgtggcc gcacagaggt tgtcctcggc 19980 gacgacgatg gacgatgagg aagacgagca gttcacccct gtcagcctga gttgcaagag 20040 gagcaacagc tcacgcagca cagccgctcg ccccaacaag aagtccaaga agcaaagcgc 20100 tgtacgggct atgcagcgag acatttgcaa ggtgagcaat atcatgcagt ctaaacatga 20160 aactatttag ggactgttcg ctggggattg acaaggatga cgaggaccaa aacgacaaga 20220 tctagctcgt gcagcagctc gcacgagaag ctggcgcatc tgaagccaac ccaagatgtg 20280 gcttggtgtc atgaggatcg tcctagtgcc caacctcatg gagttcttca tcaactccac 20340 cccagaaggc agattggccg tcatcgagca ctatgcctcg gtcggcaact agtcctcctc 20400 atgcatgcat atatgtcgtg cagcattaga gtagtcatgt gttgtgtttt tattaatgta 20460 tgttctgtag cacttgtagt gagtcggagg gatgcagtat ggtattgtat caggtttgtt 20520 gaacctttat ttcatgaatg atatttgaat cttattttca cttggcctac cgattggtga 20580 ttaccagttc gaatgacatt tggggtgcgc tgcatgaaat ttgaacgcct gaatttgaac 20640 tcatttgttt gttgttgttg ttcacttgaa cagacaccgg gagggcacga ggatgttggg 20700 agatattggc aatacccgtg gtagtcagga gtctcgacgt gctaagttgt tgaaattact 20760 gatgttagac gaggatgatg aggaagttac tgttctcatg actggtacgt acatgtatgc 20820 ctcacattta gagaagtaca tgtatgcctc acatttagag aagtactgca gtaggggtcc 20880 ttatagggtt ccacctataa ctggtttgga atgggtacaa aggaagcttg cgaacgctaa 20940 ttcatgctac aacatgttta ggatgacccc agatatgttc tttaggctac attctttact 21000 gacagataga tatggcctca aatcgaaccc aaaaactacc tctattgaag ccctaggaat 21060 gttcctgtgg atggtaggtg caccacaatc tgttaggcaa gctgaggata gatttgagag 21120 atcactagca actgttcaca acctgtttca tagagtgttg aagtgtgtcc ttaagcttgg 21180 tgatgacatc attgcgcccc gggacctatt atttagaaca atgcatgata gactgcagaa 21240 ccgtaggttt tttcctttct tcaacggatg tataggggct atagatggca ctcacgttcc 21300 tatggttgtg ccatcggaca agttcattca gcacctgtgt aggaagggca aaacaacaca 21360 gaatgtgctg gctgcatgtg actttgacgg atcagtgcat gacatgagag tcttcgatga 21420 tgctttgaca acgtacaagg atgtgtttcc tcatccccct gcaggtatac aacttgtaca 21480 gagttcaata tttttgtcta attcaaacca ttgacgctta caggagcttg gtggtgctct 21540 agggaaatac tatctggtgg actcgggcta tccaaaccga cccggatacc ttgcaccgta 21600 caggggaagc gagtaccatc tgcaagactt tcaaaacggc gcagaacctc gaggtagaaa 21660 agaggtattc aactatgccc actcgtctct aagaaatgtg attgaaaggg cctttggggt 21720 aatgaagatg aagtggcgta tgttgttgag tgtcccaagc tatccaccgg aaacccaaac 21780 acacattata gttgcttgtt gtgctctcca taatttcatg agattgagtg gcgcatttga 21840 tagtgacttc gatcaccttg accgtcatcc aaactttgtg catcctgaag catatatgga 21900 tcagccggag tgtgtccctg cgcccacctc tgcggaatgt gagcagatga atgcatttcg 21960 tgactccatc gcaaatggtt tgttcaatag gtcttgattt gtatgatttc tatttgaaag 22020 tgttggacat gtaatttgtt tgtactgcat gctggcatgt atcagttttt gccggttgta 22080 tctttacatt tgtcatagac atttgtacaa tgtattttta ttgcacatgt aatttttaca 22140 gtttggacat gtatttgtaa ttggacattt gaaagttcat aaattttaat aagatgctgc 22200 atgttttgca tgttcagatg cacagctgtt gtcagatttt cggatgaaca gtacccgaaa 22260 ttttggttga acagtttgaa aactttgcat cgatccttta aagtctgtaa aaatgtgggc 22320 cactccgtca gcaagagtca tcgattcttc aaaggctgag attgtagcca gtcaaatata 22380 ctgtagatct actcatcata agtccaacaa aattgaattt ttcattttat gatttttctg 22440 tgatttatta tgttttttca aagattcagc ggaaataaat aaaaaagaaa aagacaaaat 22500 catcctctaa aaccacttta ggggttattt gatcggtttt gaaagtttca ggggtagaat 22560 atccgttttt atatttgggg gatgaagtat tccaccttag atagtttggg ggattatgta 22620 gacctttttc tttatataat tactagagac taaaagaagg ttttgggact gttcctatta 22680 tgagatgtct agtataaaag aatatcaacc ggacactagg cccaactcaa acaggcccaa 22740 ttcggctaga ggcccacagc tccaaaacaa taggacagac acctctttaa acgcacgtct 22800 gagataagaa tattgcagac gtgtacacca aacaaacgtc tgtaattttc gcctgtgcaa 22860 tgcgcgtctg tgttattgat aatcagagac gtgtgtttat tgagactctt attacagacg 22920 cttgtgattc aacagacgtc tgtgttaatt cttattacag acgcatgttt aatagttctt 22980 atacatgaca tgcgaattta agcttttttc acatagtg 23018 // ID EnSpm1_SB repbase; DNA; GRAS; 6723 BP. XX AC . XX DT 23-OCT-2009 (Rel. 14.12, Created) DT 23-OCT-2009 (Rel. 14.12, Last updated, Version 2) XX DE EnSpm-type DNA transposon - consensus. XX KW EnSpm; DNA transposon; Transposable Element; EnSpm1_SB. XX OS Sorghum bicolor OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Sorghum. XX RN [1] RP 1-6723 RA Jurka J.; RT "DNA transposons from sorghum."; RL Repbase Reports 9(12), 3019-3019 (2009). XX DR [1] (Consensus) XX CC >97% identical to consensus. XX FH Key Location/Qualifiers FT CDS 966..4511 FT /product="EnSpm1_SB_1p" FT /translation="MENRATWMYGLPRYSQAYADEVDKFITVAVNHAKTLS FT AGNNCSVICPCKDCKNHLATYDVEIIRSHLIRRGFVPNYTVWLHHGEVMFL FT DGNDDDQEDDAEEGQLLSQYADMFEAQMQHDSANEQARGDDAGGVDNNDGD FT VGGVDNNDAGACEGDAENFDNLEEMLRAIGPEILQQKKGLENLERVKTASK FT ETVYGVEKGCPTHWTLLRFVLELLILKAKYGWSDCSFDDLLHLLSSVLPLP FT NLVPSNTYHAKKVISPLTMGVEKIHACPNHCILFRGKTFEGLDKCPRCGAS FT RYKDNDLYSGGEASTGNKRSKKGSKKVVQESRPPEDTPLGNDAKKRKIPAL FT VMWYLPVTDRLRRIFLNPKEAALMTWWDDERKVDDDVIAHPADGSQWQDFD FT NNNPLFSSDPRNVRFALSTDGMNPFNERTSNHSTWPVILTMYNIPTWLCQK FT RKYLFLTVLVSGPQQPGFDMDVFLEPVMEEFEKLWRTGELMYDAFQKETFT FT LRAIIFVTINDHPALFALSGQIKGKTGCLVCLDDTKWVYLDGSKKTVYIRN FT RRFLKQGHKYRSKLYLKYFGNIPEDEDRPPERRHDGQYVFQMVKNISVIYG FT KKKMDGTPRDRSTPPIEGVPFKKKSIFFQYLEYWPQLEVPHAIDAMHVQKN FT VFESLIATLMDTPKSKDSLKARRDMEQLHVMPELHPVLETKTGKYTLPAAS FT YNLDLEERRGLCTSVKGIKVPTGFSANPKKLVSMKDLSFPHCKAHDCHMML FT TVFLPIAIRAIKPEFLKMAITRMCYFWSKISQKKISKTELSDLHDFVVETQ FT NQLEMCLPPAFFDPMVHLMIHMVHQIQALGPCYLHEMWSYERFMSVLSRYV FT HNRAYPEGSMIEGYSSEEVIECCQEYLKVQRGIGIPDSHYKGRLAGKGTNG FT RKIFIDNEYAEVSRAHYAVLVSTKLMEPYIDEHMEIIQSERNGRTGDWVMK FT QHKQRLTSWLKDQNIQPGETIDSITISKLAAGPSRQVTSWSSYEINGYTYY FT THAKDSKCVNQNSGVRAVAIGAGGQKIDYFGIIEDIWELDYGTEALNVALF FT RCRWIKQHEFNEIGLRVVDLHNIGYQDDPWVLASHVTQVFYMTDPLSIVPP FT KKKPKHVVIPGKQHIIGVDGVDDVEAYNKCDQMPLFTDFINKIGVVEKNLP FT KDVLPWERKGVKWKTVTAADTNK" XX SQ Sequence 6723 BP; 2106 A; 1230 C; 1480 G; 1904 T; 3 other; gaaccgccct tacagtgggt gggcagccaa ccaggaagtg agccgccctt gcagtgttct 60 ctgtaggggc ggttggtgtt accagccgcc cctacagtgg tctgtagcat aagtggccag 120 cccactcttc ttcctccccg agccactcac ttccactcgc aaaaaaaggt ttgggaggcc 180 ttgggcacct ccctaaaatc actctaggaa gggggggagg ttttgaactt aaatcctttg 240 gtggggagct tgtttaaggt aagaaaatgc tattcccacc ctctaatcca agttttattg 300 gttggttagt gagcaattta cattttggtt ttctctctct tccatggagc ttgagctttg 360 tgttgaccaa attagagctt atctacgatg ctattagtgt agaataggta gagacaccac 420 cttgcaccat caattaggtg atatagcttg attttattgg agattaattg tagtttcatg 480 tatggagaga aaaggcattc tagatctagg gtttcctttt ttttttttgt ttcatgaatt 540 tggaatgtgg ttggcatgaa tagttattgg taaactaata gttgttgtta atattaattg 600 tttctaataa tggtagataa taattggtaa tattaattat gtctaataat cgtttctaac 660 acaattatta ctaataatga tagctaataa ttgttgctaa taatggtaga taataattgt 720 tacttattaa ttgttgctaa taatggtaga taataattgg tamtattaat tatgtctaat 780 aatcgtttct aacacaatta ttactaataa tgatagctaa taattgttgc taataatggt 840 agataataat tgttacttat taattgttgc taataatggt agataataat tggtactatt 900 aattatagct aataatcgtt gctaataatt attctcaact aattattttt tttatttatg 960 taaagatgga gaatagggct acttggatgt atggtttgcc aaggtactcg caagcctatg 1020 ctgatgaggt ggacaaattt attacagtcg cggtgaatca tgcaaagacg ttgtcagcag 1080 gaaataattg ttcagttatt tgtccctgta aagattgcaa gaaccactta gcaacttatg 1140 atgtggaaat catcagatca catctgatta ggcgaggatt tgtcccaaac tacacagtat 1200 ggcttcatca tggtgaagta atgtttcttg acggcaacga tgatgaccaa gaagacgatg 1260 ctgaagaagg ccaattgttg tcccaatacg cagacatgtt tgaagcacaa atgcaacatg 1320 attcagccaa tgaacaagca cgtggtgatg atgccggtgg tgtcgacaat aatgatgggg 1380 atgttggcgg tgttgacaat aatgatgctg gagcatgtga gggggatgca gaaaactttg 1440 acaacttaga ggaaatgctt cgggccattg gaccagaaat actacaacag aagaagggtc 1500 tagaaaatct agagcgggtg aaaacagcgt caaaggagac tgtgtatggt gttgagaagg 1560 gctgtccaac acactggaca ctgctccgtt ttgtgcttga gctactcatc ctgaaggcta 1620 agtacggctg gtcagactgc agttttgacg atctgttgca tcttctgtca tctgtgctgc 1680 cactgccgaa cttagttccc tccaacacat accatgctaa gaaggtcata agtccattga 1740 caatgggtgt tgaaaagatc catgcatgcc ccaaccattg tatccttttt cgtggtaaaa 1800 cgttcgaagg tctggataaa tgtcctcgtt gtggggcaag tcggtacaag gacaatgacc 1860 tttacagtgg cggagaagcc tccaccggga acaagaggag taagaagggt tccaaaaagg 1920 tggtacaaga atctcgacct ccagaggaca ccccattagg caacgacgca aagaagagaa 1980 aaattcctgc cttggtaatg tggtatctgc cagtgaccga ccgcttgagg cgtattttcc 2040 tgaaccctaa ggaagccgcg ctcatgacat ggtgggacga tgagcgcaag gtcgatgacg 2100 atgtgattgc acacccggcc gatggcagtc agtggcagga cttcgataat aacaacccac 2160 tgttcagttc ggacccaagg aatgtacggt ttgccttgag caccgatgga atgaatccct 2220 tcaacgagag gacgagcaac catagcactt ggccagtgat cttgaccatg tacaacatcc 2280 caacgtggtt gtgtcagaag agaaagtatc ttttcctcac tgttcttgtt tctggccctc 2340 agcaaccagg ctttgatatg gacgtgttcc tcgagcctgt gatggaagaa ttcgagaaac 2400 tatggaggac aggggagctg atgtatgatg cattccaaaa ggagaccttc acattaagag 2460 caataatatt tgtgactatc aacgaccacc ctgcgttgtt tgccttgtct ggacaaatca 2520 aaggcaagac gggatgctta gtctgtctgg atgatactaa atgggtgtac ctagatggat 2580 ctaagaagac tgtttacatc aggaatcgtc gctttttaaa gcaaggtcac aagtaccgta 2640 gcaaactgta cttaaagtat tttggcaaca tcccagagga tgaagatcga cctccggaga 2700 gacgtcatga tggacaatat gtgttccaaa tggtgaaaaa tataagcgtc atctatggaa 2760 agaagaaaat ggatggaaca cctagagata gaagcacacc tcctattgaa ggcgtgcctt 2820 ttaagaaaaa gtcaatcttc tttcagtatc ttgaatattg gccacaattg gaggtccccc 2880 atgccattga tgctatgcat gtgcagaaga atgtctttga gagtctcatc gctaccttga 2940 tggacacacc gaagtcaaag gatagtctca aagcaaggag agacatggag cagctacatg 3000 tgatgccaga gcttcacccg gtacttgaga caaaaactgg aaaatacacc ctacccgcgg 3060 ctagctacaa cctggaccta gaagagagga gaggtttatg cacttctgtg aaggggatca 3120 aagtcccgac tgggttttcg gcaaacccga agaagctagt gtcgatgaag gacctatcat 3180 ttccacactg caaggctcac gattgtcata tgatgctgac ggtgttccta ccaatcgcaa 3240 taagggctat caagccagag tttttgaaga tggctatcac ccgcatgtgc tacttctggt 3300 cgaagatctc acagaagaag attagcaaga cagagctgag tgacctacat gattttgtcg 3360 tagagaccca aaaccaacta gagatgtgtt tacctcccgc tttcttcgac cctatggtac 3420 atctcatgat tcacatggtt catcagatac aggcgttggg cccttgctac ttgcatgaaa 3480 tgtggtcgta tgagcggttc atgtcggttc taagccgata cgtgcataat cgtgcatacc 3540 cagagggctc tatgatagag ggctacagta gtgaagaagt catcgagtgc tgtcaagagt 3600 acctaaaagt acagagaggg attggtattc ccgattctca ctacaagggt aggctggccg 3660 ggaagggcac aaatggtaga aaaatcttca tcgacaatga atacgcagaa gtgagtcggg 3720 cgcactacgc tgtcttggtg agcacaaaac tgatggaacc atatattgat gaacacatgg 3780 agatcatcca atcagagaga aatggtcgta caggtgattg ggtcatgaaa caacacaagc 3840 aacgcctaac ttcatggttg aaggaccaaa acatacagcc tggagaaacc atagattcta 3900 ttaccatcag taagttggca gcggggccat caagacaggt gacatcttgg agttcttatg 3960 agatcaatgg gtacacatac tatacccacg caaaggatag taaatgtgtg aaccaaaaca 4020 gtggtgttcg agcagtggct atcggcgcag ggggacaaaa gatcgactac tttggcataa 4080 ttgaagatat atgggaactt gactatggaa ctgaggcact aaatgtggcc ctatttcgat 4140 gtcgctggat caagcaacat gaattcaatg aaatcggatt gagggtcgtg gaccttcaca 4200 acataggcta ccaggatgat ccatgggtcc ttgcttcaca tgttacacag gttttctata 4260 tgaccgaccc gctcagcatt gtccccccaa agaagaaacc taagcatgtg gttatccctg 4320 gaaaacaaca cattatcgga gttgatggcg ttgatgatgt tgaagcctac aataagtgcg 4380 atcagatgcc gctattcaca gactttatta acaagatcgg tgttgtggaa aaaaacctac 4440 ccaaagacgt attgccatgg gaacgaaaag gtgtgaagtg gaaaactgtt acggcggcgg 4500 atactaataa atagtcattt gtatgtgtgt gagacttcat ttatgtatcc atgtgagact 4560 acatttatgt atgcgtgtga gactacattt atgtatgtgt gtgagactac atttatgtat 4620 cgtgtgagac tacatttatg tatgtgtgtg agactaattt atgtatgtgt gtgagactac 4680 atttatgtat gcgtgtgaga ctacatttta gaactgcact ttcttaacgc tttgtcaaat 4740 gcaaaatgtc tatatatcaa atgtagatct tgatgagtgg aacaaaattg ctattatgac 4800 tttcggagtt ggggccgtct agggtcccga aaacgtgcgt gtagcagtga aaatttgaaa 4860 tttcaaaatt ttagtggtcc aaaccatctc agatgaaaag ttgaccatac aacaaatgtg 4920 tatcttgata aggggaacaa actttgtatt catgactttt gcatctgaga ccatctcggg 4980 tccggtcaaa gtgtattttc taaaaaatcc aatgtttgac ttggtcaaac taggtcaaac 5040 taggcaataa aatacctcaa atgaaaaaaa attgaataca acatagttag acctcatcaa 5100 ggtctacctt tgatacacaa tacatttttg catttggaaa agttacagaa aactcagttc 5160 acatgttttg aaaacccaag gcgtggcttg gtcaaacctg gtcaaacgag tgagtaaatg 5220 acctcaaatg aaaaactttt gaatacaagg tagatagagc tcatcaagat acacattcca 5280 tacgtaggac atttttgcat ttgagaaagt gtttgtaaac tctagtcaca aagtcttgaa 5340 tcacacatag actttatgaa actacatgcg ggacttgtgg atttagaact gcactttctt 5400 aacgctttgt caaatgcaaa aatgtcctat atatcaaatg tagatcttga tgagtggaac 5460 aaaattgcta ttcatgactt tcggagttgg ggccgtctag ggtcccgaaa acgtgcgtgt 5520 agcagtgaaa atttgaaatt tcaaaatttt agtggtccaa accatctcag atgaaaagtt 5580 gaccattaca acaaatgtgt atcttgataa ggggaacaaa ctttgtattc atgacttttg 5640 catctgagac catctcgggt ccggtcaaag tgtattttct aaaaaatcca atgtttgact 5700 tggtcaaact aggtcaaact aggcaataaa atacctcaaa tgaaaaaaaa ttgaatacaa 5760 catagttaga cctcatcaag gtctaccttt gatacacaat acatttttgc atttggaaaa 5820 gttacagaaa actcagttca catgttttga aaacccaagg cgtggcttgg tcaaacctgg 5880 tcaaacgagt gagtaaatga cctcaaatga aaaacttttg aatacaaggt agatagagct 5940 catcaagata cacattccat acataggaca tttttgcatt tgagaaagtg tttgtaaact 6000 ctagtcacaa agtcttgaat cacacataga ctttatgaaa ctacatgcgg gacttgtgga 6060 tttagaactg cactttctta acgctttgtc aaatgcaaaa atgtcctata tatcaaatgt 6120 agatcttgat gagtggaaca aaattgctat tcatgacttt cggagttggg gccgtctagg 6180 gtcccgaaaa cgtgcgtgta gcagtgaaaa tttgaaattt caaaatttta gtggtccaaa 6240 ccatctcaga tgaaaagttg accattacaa caaatgtgta tcttgataag gggaacaaac 6300 tttgtattca tgacttttgc atctgagacc atctcgggtc cggtcaaagt gtattttcta 6360 aaaaatccaa tgtttgactt ggtcaaacta ggtcaaacta ggcaataaaa tacctcaaat 6420 gaaaatccaa tgtttgaaaa tccatccaat gttttattca aaatkttcaa atgaaaactg 6480 tttcaaataa ttcaaattta cataaatctg awttttattt ctaaaaacat ttgattttta 6540 ttttttaaaa aaacatggaa tagtttaaaa ttatacactt catatagata aatcaatcaa 6600 aaatacaata gtttaatttt attttataaa tatatttaag gttaagtata aactgaatcg 6660 tttaaatcta ttttatttaa gaaaaaataa aaatttggta attaaccact gtaagggcgg 6720 ttc 6723 // ID Gypsy4-SB_LTR repbase; DNA; GRAS; 914 BP. XX AC . XX DT 22-OCT-2009 (Rel. 14.12, Created) DT 22-OCT-2009 (Rel. 14.12, Last updated, Version 2) XX DE Gypsy-type LTR retrotransposon from sorghum: long terminal DE repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; Gypsy4-SB_I; KW Gypsy4-SB_LTR. XX OS Sorghum bicolor OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Sorghum. XX RN [1] RP 1-914 RA Jurka J.; RT "LTR retrotransposons from sorghum."; RL Repbase Reports 9(12), 3099-3099 (2009). XX DR [1] (Consensus) XX CC Consensus LTRs are >99% similar to each other (1 mismatch). CC Individual copies of the entire sequence are ~98% identical to CC consensus. XX SQ Sequence 914 BP; 197 A; 237 C; 228 G; 252 T; 0 other; tgatgaggac atcaacacca gcgatacatc ctctccgaca caacctatag ctggtcctct 60 tactcgtgct cgtgttcgtc aacttaataa tcaagtgagt tccttgataa gctcgtgtcc 120 atcttgttta gacaatggaa acgcgtgcac tcttgttttg attaggaacc aaggagaaga 180 ccgaaaggga gaaggactca cgctcgctgg attcggacag cagcaaagcg ccaacttgtg 240 accgttacca cggttgcata cggattcgga ttcgggcgct tcaggacttg ttggaaagct 300 tatcaagtct actttcatat gaatcaagtc ccacgtcaat acctgttcgg cagcagcggc 360 aatgatccaa ttaccgtcga taggtcttgc tgtccagggt gctgcgtcac ctcattttgg 420 gccgatggcc catgtatcaa gttgggtcca ttagggacgc gtcctagggt tggaggacga 480 ccccaacacc tctttggtcg tcaatccatc tacttatatc cctctagagc cgccatggtc 540 gttgggtttt gtttagatca agtttagcct tcgctacttg cttgtaggcg cgcgtgcagg 600 atcagccgcc cgtctccttg tcttcggaac cccattgttg attcagattc agtttgaaac 660 cttcaattca tcttgcaaat tcagtgcttg tttcctcgtt cttgctagtt cttcgattgc 720 ttgcaggacg ggagccctag gggctggttg tcgcgctcca caagatcgtg acggctattg 780 gacgtggtgt atcggttgct aaggcgcggt cttgagggct gtagtcgggc cgtgaacgtc 840 atctccatcc accaatcgag ttatccccgt ctctcatcaa aagatcgggc aaaaacccta 900 gcgggttcgc atca 914 // ID En/Spm3_TM repbase; DNA; GRAS; 11391 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE En/Spm-like DNA transposon. XX KW DNA transposon; transposase; En/Spm superfamily; CACTA; TREP777; KW Enac; En/Spm3_TM. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RP 1-11391 RA Wicker T., Yahiaoui N., Guyot R., Schlagenhauf E., Liu D.Z., RA Dubcovsky J. and Keller B.; RT "Dynamic genome equilibrium at orthologous LMW glutenin loci of RT the A and Am genomes of wheat."; RL Unpublished.. XX RN [2] RP 1-11391 RA Wicker T.; RT "Direct Submission."; RL Direct Submission to Repbase Update (from TREP) (JAN-2003).. XX SQ Sequence 11391 BP; 3414 A; 2290 C; 2320 G; 3367 T; 0 other; cactacaaga aaaactgcct gtagagatgt cgtactctat agctagagat gtgttattcc 60 atctctaggc aaccatagag tcgacttagt aaagcgtctt tggagcgtct cctcatgcac 120 cgtctcaaaa acatgtagac acgctagcta agcgtgtcta cattgcacga gacgctatat 180 tgggacattg aaaagcgttc ctagatatga ggcgctatat taggatgttc aaaagcgtcc 240 ctagatatga ggcgccatat tgggtcgttc aaaagcaccc atagatatga gacgctatat 300 tgagatgttc aaaagcatat ctaggtatgt agagtcgttt tgttagatgc gcttttctcg 360 tctctactca tagagccttt tcattcatca tgggccctta accccattct tatacacgct 420 atgtagagac gctatattca tctctaaatt tagacaagct ttttgtaact aggtaatatt 480 taactctaaa aattatttga gttattttga atttgtattt caccattcca aatcaagtta 540 cttcatcaga acacatgctt gtgcagaatg atcaacaaat attgttatat aaaggtatcc 600 actcatatca cgagccacat tcacaggcaa caaatactat ataaagggat catcccatat 660 caccaattgt atttagaagt atctcatttt cacaatttca ataaggatca agcaccttga 720 gttcagaacc gaatcaaatt agatattcat atgaaagatg caaataatta agagaagatg 780 gtacaaccag aacaaagttt tcctatgaag ctaaatcctt ttaaaaaata caatatttgt 840 ccatttaaaa agtatttctt ctatagttgc tcttccctcc tacaatgcac tccttctcta 900 aactaatctt gagctaccct gaaaaaggaa gttaacagag aaaaaaatta gaatgtaagc 960 tttaagagca gtgtgtgaag aaatgtactc tgatgaaatt gtaagagatg tatcagtgtt 1020 tggtggcttt ttggaggcta tgtaggagtg gttgggattg atttttttga cttaaaaaca 1080 caataattct tcataaataa taaaccttaa atatgtacat tggagcataa tcgatgattg 1140 tatgaaagtg tacttatgtg cgatcgaggc catgcaataa catgactaat agcatcccaa 1200 attgtttgga atttttcata cggtctaacc agtgtctaat atccatgtct tgaaacatcg 1260 aaaatagaaa ctgctacata ttgctctaca agcatgtttc cttcaaccac atatgtttta 1320 tctctactct ctgaagtttc ttcggccaca aatttatttt tgcttcttag gttcaacgaa 1380 aacaacaaga ctttcatttt atcacatttt caagaagtga aacattcatt gtcacaaatc 1440 atggaatatt tcactctatg caaaaatgga cgattacaca tgaaattaga ccaactaact 1500 attctaacca ttcatcattc tatgacgcaa attagttgta cacttgattc aggaccacct 1560 tgcttggtcg catagctttt tcagcatgac cattctatga ttcaggatca tcatgtgctt 1620 tctagttgtg gttcagttca gtttaaactt ataaaaaaca tagacattgt ttgataaaaa 1680 agtagaaatt tatgcgcgag cacacacaca cacacacacc acttagcaac tgtgtgttca 1740 tctggtgaag ataagctagt gcaaccctct ttagctctcg cacaattgct aggatgcaat 1800 tcctagttag tgaactgctt gtccgataaa gttcattcta cacagccttg attgacccta 1860 tcaatttttc aatgtgggct ttctacagtt gaggttcagt ttggttgtaa gtaaacatat 1920 acaaaacata gacattgtgt gaaaacaaag tagaaatttg tgcacaacag gcactcctta 1980 ccaaccatgt gttcatgtgg tatagggaaa atggtgtaat cctctccggt tgattttgca 2040 taaccttgat tggccctata aaacttttta atgtgttctt tctacaattg aggttcagtt 2100 cattactaca taaacataca gaaaacatag gctatgtttg ataacgaagc agaaatttat 2160 gcaaacccgc actttagcaa ccatgtgtgg taaagataaa ccattgcaat cctccttggt 2220 tcttgtagga aacctatgat gcaattcctg gatagtgatc tgcttgtacg gtaaagttaa 2280 ctctgcactt ccttgactgg ccttatcaga cttctcaatg tatgctttct gcaattgagg 2340 ttttgttcgg ttataagtaa acttatgcaa aacatatgca atttctaata atgaagcaac 2400 atttttatgc gcacacacac acacgttaga aaccattttt tcatgtggtg atgataaacc 2460 ggtgtaacac tctttggata tcacacaatt gctaagatgt agttcctgca acttatgacg 2520 agcaattctt tttaagtatg agaataaacc agaatattta ttagcgaaga aactattata 2580 tcacctgcat agcactcaat ggagcatgca cattgccagg ggatctttca actatgttat 2640 gtgattcatt tggaaggtca ttgccaacaa ctctttcgtt gagatcaacc tgaaacaaga 2700 acatgacaat agtatattaa tactcatact tttataattg tagaaagata tttggtttaa 2760 ataacaactt cataacttcc cgctgttaca aatccatttc tccaatcctc tcttggggta 2820 tttttgcttc acgtatgaac gcatcatagc taactcgacc gtcatatttt ctgcattatc 2880 tcctagtgcc cacggtgcaa attgaacact tccttctttc tcagaatgtt gtacaaaaga 2940 cagcccctca gaaactttta ttccgctgca atacttatca acataatacc ctcgaagttc 3000 tttcgcctct tcgccatgcc tacttgtaaa tacttctctg taataattga atgaaaggca 3060 ttgttatctt tctttctttc ttcaagtttc tcttattgaa ataaatacaa acaactcatt 3120 acactaagtt taaattaaaa catttactgt aatcacaagt agaagtatac catcactatg 3180 tttgtgttcg caattttgta tttaccgtcc ttcttcttat gagcttcatc cctcagttca 3240 atcttgctaa cctttcaatt gctcttgatt tcctgtacaa attaagtaaa ttagaatgtt 3300 tgttaatgtt tctgttagaa catattcagt tttcttcact aacaaaactt ttctcaacca 3360 tctttagaaa taaaaagctt caccatccct tttctgagcc tagcatggct ttttttcctg 3420 gttgtgtgtg gattgttcta cttctttgca tacccggtgt tctttttgca taatatctgg 3480 tagaaaaaca catccagtca ataataatgt caccaaacta attatgtatg ccagattaag 3540 tatgagaata gaacacataa ccatgcgtca atcctagcac caaaacccaa caagagtatc 3600 cttgtgatgt tcattaacac ctttgggaac acctactata atatcatcca aagcctctta 3660 tcatgcttga aatatttatt attcaactga gacttatacg gtctacattt ttgttaatag 3720 taaataggat ctggtctcgt ttaagttgtc tcatctcatt ggggtagata aatttctcct 3780 tcaaaaaata aaattggcag tcaacaatgt caaattaaca gtcttggaca gtgcatgaat 3840 taaacaggat acagaacagt gaatcggcat gttttgcgac agagaacgtt caatgcaaaa 3900 ctctatagga atggccggat acagaatagt gaatcggcat gttttgcggt agagaacgtt 3960 caatgcaaaa ctctagaggg acggcttctt ttacttagct gatgaagcat acgggtatat 4020 acagtaacaa atctttcttt tatgttagtt gggaattgta ataaagatat aacttgtgcg 4080 agcttcaaat gggcaaaaga ttgaaaaaag cttttgggtt atcaaaaatg gttttacatg 4140 tacagctaag tatactgttt tggtttaaca aaatttgttc gtgtataatt ttttttatca 4200 attttgttct tgttgtaaaa taacagggta cgttgcagct gtagaaccaa acactaccat 4260 gttttaaact ccagtgtaaa tgtaatctga ggttatttgg ccggtctatc taacaccaat 4320 tgtacaactg ttgagttttg ccatataaaa gtatattgta ccaatcagtt gctcacatat 4380 ttttaagtaa atatgttaga attgaatcct aggcaagcaa acaattcacc aaacagttgt 4440 gcattgccta caaggaggaa gtaaggagac caacgagaag aggatcgaga cttgagatgc 4500 ataaatagag gagaccactt tggttgtttt gatgataaaa ctgcaggggc tatgggaatc 4560 aaggatcacc tgcttggcgt ggtggaggct gaagatgctg gacgaagaca agatcttctt 4620 aaggggcgac tgatgtaccg acgaaacgca cggcggaact ttgggtgaag gaggagaccg 4680 acatggacgc ggtttcatga cggcgagcac gacgtccgga ggagcatggc ttacagtaag 4740 gacgacggtg ttgaagggga tccaactagc gagcttgccg atggaggaaa actggagccg 4800 atgccgggcg gagcaagcag cggcgagcgg agcaaggggt ggaagacacc ccttgacggt 4860 gaggcttcca cggtgcgggg tgcgtgaatg ggcggtgtgc gcggtggtga tgccggagta 4920 gattggactc attgaagtcg ggcggttgga tgagaggtgg gggagatggt ggcggcgaaa 4980 gttatccggc gacacatacg gacataaagt tgattaagtg caaataattt gggaatgtca 5040 gattttgtta agtgcaaata gttttttttt gcgtgaaaag tgcaaatact tcggagcgcc 5100 aagtaaccac atatacggat acatatttgt aggtgtattt ttatcagata aatattttta 5160 aacacagcac agacgcaagt gctcatacat aagcgcatac actcattctt atgaacgcac 5220 acacgcacac cctaacccta tgagcatctt cgagagattg agccgacata tcatcttgag 5280 atttacgaag tcaccataag cgcatcgttg tcgacgggag cgtctcctcc cactgaaagc 5340 gcatcaccga aaattctgaa ataaatccag gaataatacg agcactagga cttgaaccct 5400 ggtgggccag gactatcact gtccctctaa ccatccaacc acgggttggt ttgcatcgga 5460 taaatctaca ttctttgctc attttctagg aaggatcaag ctttagagga taatatacgt 5520 atgaagaaat atccacatag ttttaataag aaactataaa gccagtggta gatcgaaggg 5580 gcggagtgtg actcgaaaaa caaggatgcc actataatac atggacacgt cctgagacac 5640 acatatggga gccgggcatc ctctatagta cctgaaacgc ctgcgcgcat ttcaaacata 5700 aaccgggtgc agaaatttta tgcaaaccaa acaagtttca tgccaacctg ttaaaagtat 5760 gatacattta cataaaccgg gtgaggacaa acactgagtc ctcctcgccg atcttgattg 5820 ttaagctttt gtatttgtat tagtttgtgg tttctggtat atgccatgta aacctcgtat 5880 ttgtacagga tttcatctta taaatatgta ggtacaagcc attcttcaca actggcatgc 5940 tcgctgccgc atgcccttct tcaccaatgg gggagggggg ttctctctac ctccctattc 6000 gggcagtaat cgggcaggac tcccctactg cccttagcct cggtgatgtt gtcgaaccag 6060 tggtggtcga tgctcctttt gtggttaatc gtatctgtca gtatctccac tcaccttctg 6120 attcgcatgt cctaagaggg gagagacaaa gacaggtgat aagaaggcga tcgttggccg 6180 gtaagtagat ggacggctct tcgacaggag gcagtggaat atccaaacct tagaatacca 6240 tttatttgat gccgctccta gcactaccca ggagggtgct tggctgggtc ctaaaaaaca 6300 tgaagagtgg gtcccacaca ttctagcaag ggagcaagcc gacgacacaa aagatggctc 6360 catattgagt ctaaacaaat gtatgagaat tctggaagtt ttcactagtt cccaaaacca 6420 gctaaatatg aggcaacaga ccattttgaa aacaaaaaaa aaatattttt tcagaaaact 6480 tgcaaggtaa cgtttcgaag aaaagaaact actctttcct ctaaaaacga aggacgagac 6540 tttcaacaaa cgaaaaagtg aattcaagcc ttccttttcg accggagatg tcagggatgt 6600 ctctaagaat tcttctattt atagtaagga aaccgaagga atcatcatac acccagaagg 6660 atccctttta attagttcac accaagaaca atgttcaaca tatttaaatt ggtgagaaac 6720 agcataaggg gcccatgtgg tactatttaa aagaaatatc cataggcatt aataccacaa 6780 ggtgggaatc cttttttact gcaagatgat ggtgcgcgcg ggctgtggtg gaagaggtcg 6840 aatagctgga agcctggaac gcatgcgtca tatacggagt cccgcggttg ggccgaccca 6900 ctggggcggg cgagctggat gttttcttta gcgctcgaca gaaaaatcag aaaaacgagt 6960 gcgctaggaa gtactcgaat cgcaaccaca taatacagag tgcacactgt tagccgctag 7020 aactaaatgt tgttgttgat ttgctgaagc gaaatatatg taaagaacaa actacattac 7080 cgagatttga aaagacattt atgaaaaatt tgaacatatt tttttaagaa agtgaatcat 7140 attttgaaat gcagatattt tcaaattttg gttttttttg aaaaaattga atattttctt 7200 actatataga acattttttt aacctgtgaa ttaattttcg aaatgggatc gttttttgaa 7260 atcttgaaca aatttaaaac acaaaaattt tcaaatttgt gaaaaaatat agaaactcaa 7320 atatctcaaa cagtttttaa tatgtgaaga tttttttgca aatgggaatg tttcttgaaa 7380 ttttgaaaaa aaattgaaaa cacgaatatt tttcaaaaaa ctgaacaaaa catgaaaagc 7440 gaatatttct tttgggtctg tgaacatcaa ctggtcgtcg tatgcaccac atacttgttg 7500 ggccaattaa atgtgcccta gcaaggcttt cgtctgggag tgcaggttca ggcccagctt 7560 gttgggcgca ttaggaactg gggttgcgca acggatcaag tagggtctaa ccccacgttt 7620 cagacaaagc atgccgctag ttcagttggt gaggccagtg ttactccgca ttaaaatttg 7680 ctggtcgtta gttcaaatca tgtgtcttgc attgttcgct ggtgtggcag gtccaaccat 7740 aagccaaatt gtttacacat acgattttag cgacttctgg ccatggagca aaataacctt 7800 atacagtgag cgaaccaaaa ttttaaagaa atgcacctta ctttattaaa ataatattat 7860 taataattta aaattaaagt atagaagtgt cattgtagcc gaatggttgg cgctcgcaca 7920 tgcgatgagc ttatgttgca ataggttcga actggggttt tctttttcta cacaccattt 7980 tcccattttg atttctactt gaattcctat ggtccgtctt atctctactc ctaatagacg 8040 aattggttga atagtcccca tcactttcaa ccggtttatt ttcaaccggt tttccttcgt 8100 cccacctccc accagcccct cccactggtt tttctctttt ctcgtctgac cggcaatacc 8160 caacgtattt atggtaatca atcataatta atccacgtat agtaataaat caatccaggt 8220 atggtaaggt cataactcag gaaattttga atatggtaat tatatggtaa taaatttaaa 8280 ttaccccaaa ggctatcaat ccaggtatgg taaggtcata actcgggaaa tatcgaatat 8340 ggtaataaat ttaaattacc caacgtatgt atggtaatcc atcataatta atccacgtat 8400 agtaataaat caatccaggt atggtaaggt cataactcag gaaattttga atatggtaat 8460 tatatggtaa taaatttaaa ttcccccaaa ggctatcaat ccaggtatgg taaggtcata 8520 actcaggaaa ttttgaatat ggtaattata tggtaataaa tttaaattcc cccaaaggct 8580 atcaatccag gtatggtaag gtcataactc gggaaatatc gaatatggta ataaatttaa 8640 attactacca gatatggtaa ggctatcgat ccaggtatgg cacgccctca cctgatcacc 8700 tatcacaatc tctagcccca cgcacgcacc aaagaaccca cccagcacca aacgcagctc 8760 ctctcgatcc cctcgagtaa acgccgccac cgtcgtgcga tcttcctgac acagacgctg 8820 tcgccgcctc cttcccacct acggcgtccc ccgcgtccat ggtgacggcg ctcgcgtcct 8880 acactgaccc tccgcctcat ataggttggt cgttgatgga gtgggatgtg ccgctgcggt 8940 ttggggaggc gcaatcatga tctggttggg atctcagtgt gaactcgttc tctgcgatga 9000 aggatggcgc tgcctccctg gcaaatggga tcggaggaag gggctctacg tcgtgaatgt 9060 cggcgaggca gcggccgaag gcgagcccga cggtgagcac gggtgttcgt cccatgaaat 9120 aggcggccac ggagggcgga tctgaggcca ccccaatcgc cggtggccct ttctcccatc 9180 gctcatcgcc tccattctct ctctcctcta aatctttgtc acccctgcct gattctggcc 9240 gacgccatcc ggctctcgca tcgaccacca ccagcacggc tgcgaacgag gcgcaaccgc 9300 agacgccgcc gccgccatcc tcatccacct cctccaccat ccttcccagc cgtcgtcggg 9360 ggcacccgcc atctgcgcta aatttaattt ccattgagat agagtaggct ctggattatg 9420 agatggaatg caattaaaag ccatctgatt tggccatggt tggttgtcac agaatccttg 9480 atatatgttc tactttgact tggagtgtgc ggctatgata ttgtaagtga tgagtttttt 9540 tagtgctgca ggaggtcaga cagaggtaga aatttttagt gccaaatgaa ataggtggta 9600 attattacac tctttatttg caaaaaatga gactgaaaca atgctaattt agtatgttct 9660 gtacttgtag gaaggctatg aagcaagtgg tcttccctta tttttatgaa ggtaaggtct 9720 tgctattaga ttcctgctac tctacattgc ttgactgttc tcttttatca gttcatggcc 9780 ttagggtcca tcattttctt tcaacacttg atgcttattt acttttttgg gcggcttctt 9840 ttcgatagtc atctgattta aaaattcgag catgtgtcac tttagtatgt ttcagtttca 9900 gcaaaaatcc gatgattctt ccgtggggat agccaaagtc aagatgtcga ctacagactc 9960 gtcgcagact tgcagtgaac ctggatgcgg cgagcctgat ttgtggatcg atggcgggtc 10020 ttgactttgt taggctagga ttggatggtt gcggagggtg gtgtgcttga ttgggttccc 10080 atggaagaat gtggtatcct catggatctg gtcatgccca tcctagagaa cattgtgtcc 10140 ctagctccct cgaggagtaa ggacagtgca agcggcagca gggggtaggg gtagatgtgg 10200 ggagggatgt cggcggctgc tcgaggtcat catgatgaaa cccttgattt cccatcttta 10260 tcaatggaag tggaagagca tgaagtcgag attggatagg agtttgagtt ctttttggca 10320 ccgatcggtt ccccacttta gagatgtatt ttctttgcgt gcgagcaaac agtgggttga 10380 ttctaaaagg gataggcact tttcaacaga agtgcatgac ggaccaaaaa tatgacctca 10440 ttttattcgt tcgataaata tcgcattatt ccttgttgtt cgttcggtga aatttcctaa 10500 tatttgattg ttatgttttt aattagagca ccccataatc acccaatatg aggggatgat 10560 aaatgaaaga tactgattat aaattttgaa gagtccgtgg caacgcacag gcgttatact 10620 agtatacgga attgtgctcg ctaaatgcca aacgtcagtt ggtctagtga ctatctaggt 10680 gagccaaacc gcagaacgac gtggttcgac cccccacccc accaccacca ccaacatttt 10740 tcattatttc aggatcccct ccccctcctc cagcatttcc attttatttc agggttttct 10800 acataaataa ataaaatgca gtactgcttt ctgaagaaaa aaacagtgca ttgagaaaaa 10860 aacagtgcac gcgagctacc caccgcctcg accactgaga gtgtgccacc accatgttgg 10920 ggcgtcatgc atgcacggga cacaacttga tacgatagaa agcaccatgt atgaatgaaa 10980 ggacaagtta gacgatcaga aacacgtatt ttgcaagttt atgcaccaaa ctgaccgtca 11040 cgcacaaatt gtaagactcc acatgtattt acctcttttc tttagtctaa gaaaaaaata 11100 gagtggcaca ttaaaatgtc tcacaaatcg tctcgaagaa tagagtcgca cattaaaacg 11160 tctaataaat cgtctctaag aatagtgtcg cactataaaa cgtctcacaa atcgtctcta 11220 ggttaattaa aattaaatac ttattatttt aaggctaatt acaatgagaa gtttatggcg 11280 ttatgaaaac gtcttaagaa gcgtctttag gttgctagtg ttcatggacg tagagacgaa 11340 taaaaaagcg actcagagaa agcgaccata tgtgatgttt ttgttgtagt g 11391 // ID TREP102 repbase; DNA; GRAS; 3140 BP. XX AC Z17327; XX DT 16-OCT-2002 (Rel. 7.09, Created) DT 16-OCT-2002 (Rel. 7.09, Last updated, Version 1) XX DE Hordeum vulgare unclassified repeat element, insertion in BARE-1, DE TREP102. XX KW Repetitive sequence; TREP102; complete element; KW target site duplication. XX OS Hordeum vulgare OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Hordeum. XX RN [1] RA Manninen I. and Schulman H.A.; RT "BARE-1, a copia-like retroelement in barley (Hordeum vulgare RT L.)."; RL Plant Mol Biol 22(5), 829-846 (1993). XX RN [2] RA Wicker T.; RT "Direct submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; Z17327; Positions 7553 10692. XX CC source 1. .3140 CC /organism="Hordeum vulgare" CC repeat_unit 1. .5 CC /note="target site duplication" CC repeat_unit 3136. .3140 CC /note="target site duplication" CC Insertion in BARE-1. 5bp target site duplications. XX SQ Sequence 3140 BP; 571 A; 848 C; 727 G; 994 T; 0 other; cctagtgtga cagcccgatg ccgacgttcc agaagattcc cccctttatc ccgtttttgt 60 cgtgtgtcta ttttattttg tcgcatcatc atcgcatcat tcgcatcatc tgcattgcat 120 cggcaccccg ttgccgccag ttttcaaaaa cttgcatccg ttggtagttg ccggttctcg 180 tcgttgccca ttctgagtcc gaccacactc ccacgcgtcc gcggcatcgt caaaccttgt 240 tttaaaagtg tgagtaaaac tttccctgat tgggttgaga ttttacgcgc ggtctttatt 300 agatatagct aggctgcctg tcgaatttcg tcgcgatcgg ggttcgtatg gtacccgaac 360 ggtcgaccgt agcggcaccg tattcggtct accgtcggac gtttgtcggt gttttaaaaa 420 ttcgttgccg caccgcccat tctccctctc gtccctggat atcccctcta catggcctcg 480 taaccgttcc cgcgttcaga attagccgaa tccgaccgcg cggttgaaac cggggcggga 540 tttcgctaaa cctagccccc tcttctctat atatagcccc tcctactagt attttggaca 600 gcagcccccc tgcctcattt tgtgcgccac ctaccccgaa accctagctc ccgcagcctc 660 tctctcccac cagcgccgcc ggcccgccag gcccgatcca gcccgccttg ggcccagatt 720 cgccgccccc gcgagctccc ccagctccag caccatggcc tcccgagctc cctgcccacc 780 tcgcgtgcgc gccgccccag ctccccgtgt cgccccgcag tcgccgccgg cagctcgccg 840 gagagccccg ccggacccag gccggagctc cctatgctcc tctctcttct tctctccctc 900 acccgtatct ctctcttccc gcaggttccg aggtcgccgc caccgccccg ttctacgcct 960 ccgccgcgtg gatccggtgt ggagatgaca gatccggccg gcctccgccg cccggtccgt 1020 tttcggccgc tccagtctcg ctcgtgaccc gctgccatcg tcagggtcgt tgcgaggagc 1080 catggcgctg cgtgctgtcc atcgggagat cgagcctccg ccaccgcctc gccagctcgt 1140 gggccgcgca ggagcagcca ggctgccaga tccggcccag ctaggtagcc cccccatcgg 1200 cctcctccag gcttcctcca ccgccagccc aggccggtgt gcatcctccg cccgaggccc 1260 agctccattt ccccagatct ggcccaggtg cacttggtga gcgcagctat ttccccgccc 1320 ccgttgcaac attactactt tgcgctcgtt gcctcttagg cccagttagg aattcggccc 1380 attattttgt tttattttag gtttgcgatc tatttttttt gagggtttag aatatattcg 1440 atcgcccgta tctttttatt cgtgtgtcgg atcggaatgt gtagcatatg gattttgtgt 1500 agaattccac gtagatttcg aatttctaac ttgcataatt atttgaggca gtttgatgtg 1560 cctaatgcat cgttttgcgt gctgtttcaa taggatccgt tctgtagtta tttctcgtgc 1620 gtgtccggat tgcccgtata ccgtagatta aatgtccatg ttttagggac catttttcca 1680 tgtattttag agcggtcatt gtatttttgc gtgtagggaa ttgccgctaa tttattttcc 1740 cgcgtatagg ttttttctcg catttatgtg tggcattatt ttgtattgca accccacata 1800 ttttatatgt ttccggggta gaaaaatcca ttggattttt ctgtgcaatt agttttagct 1860 tttgagtaag ttagttcttg agatattttt ccgtgttgcc ctcttgtcat tttcgtagga 1920 tttattccgt gcttcgtttg atcaagttgt caactggaga gttgatcttg ggtatttact 1980 ctagcccctg gtatttttgg ttgcaatgta aatgcatgtt taggtgtggt ttgattgctc 2040 tcaagttgct agaaatagtg ctgatttgga ggagctgaaa tatttctaag tctggaatct 2100 gttattattt tgttgttgtc ttgtcttgtt tctatctttt gttctgtagc tcttttgagg 2160 ttggtgcaat ggagttagtg gtaacccttg tgattctcta gcatgctgtg aattttcatg 2220 ccatttggag acctgtatct tatgattttc tgctgtcaat atggcttcag atcgaaaact 2280 gcactttcat gaggtgtaat tttcactaag tttgaaatag tgtgtgagat gccattttgt 2340 gccttctttc cctagtgacg gaaagtcgtg cccgcggtta tgtggcaacg tggaagattt 2400 gtttaacact ggttctagat aacttgaagt taacttaatt aaaatatgct aactatgtgt 2460 gtaaccgtga ctgtctcttt catgagttat ttctccgatc gaggacacgg tggggttatg 2520 tctgacgtag gtaggtgttt cggatcattc atttgatcat cagtagtcac gtccgctatg 2580 cgtagatctt cccactctta tttcttgtac tcgtaagcta gccaccaaat atatgcttag 2640 ccgctgctgc aacctcacca cctaaccatg cctcacccat taagctttgc tagtcttgat 2700 acctttggaa atgagattgc tgagtcccct gtggctcaca gattactaca acaccagttg 2760 caggtacatg taaaggttat ttgacacgag cgcattgatt gttcatttgg agttgcttct 2820 tcttcttctt cttcatcgat ctaggatggg ttccaggccg gcagcctggg atagcaagga 2880 tggacgtcgt tcttcttttg tcgtttgttt tcgtccgtag tcggaccctg ctcttactct 2940 tgatgtttat gtaatgtatt gatgtgactc tgatgtagct tgtggcgagt gtaagccaat 3000 tcaatatata tatctcatct tttcagtaca tgtacttgta acgatatcca ttcttgcgac 3060 acgacgagat gcgcttctat ccctgacgag gccttcgtgc caaatcgagg atagggtcgc 3120 atcttgggcg tgacacctag 3140 // ID ISABELLE_TM repbase; DNA; GRAS; 8408 BP. XX AC AF326781; XX DT 16-OCT-2002 (Rel. 4.3, Created) DT 16-OCT-2002 (Rel. 4.3, Last updated, Version 1) XX DE Triticum monococcum non-LTR LINE retrotransposon, ISABELLE_TM. XX KW LINE; retrotransposon; non-LTR; complete element (6 bp TSD); KW TREP238; ISABELLE_TM. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RP 1-8408 RA Wicker T., Stein N., Albar L., Feuillet C., Schlagenhauf E. RA and Keller B.; RT "Analysis of a contiguous 211 kb sequence in diploid wheat RT (Triticum monococcum L.) reveals multiple mechanisms of genome RT evolution."; RL Plant J 26(3), 307-316 (2001). XX RN [2] RP 1-8408 RA Wicker T.; RT "Direct Submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AF326781; Positions 170190 178505. XX CC /organism="Triticum monococcum" CC /note="target site duplication" CC /note="target site duplication". XX SQ Sequence 8408 BP; 2379 A; 1717 C; 1933 G; 2379 T; 0 other; agttcgtttt tttgctatct ttgttttttt tttgtcattt tttcactgtt tcgtcctgtt 60 tttctgtgtt gtgggtttgt ttggtttttt ttacacttga aacagtagga gaggctccta 120 ctgtatgtat taatataagt aacaaaaagt cttacaaagt cataacctta tatccattgc 180 catggggcag ttgggggggg gggggggtgg atacaagggg aaaagaccca aaagaggcag 240 aaaaagaaag ttcgatacta tctacaaaag aggtaaaaaa aggggataag tttttctccc 300 actctgtagc gaagaaggga gaggtcttct ttcaacctag ccagccagga tgatttcgat 360 ggtgagatcc ctcaaaagtg tttattgttt ctctctttcc atatgctcca agcagcctga 420 aggaaaatat ccatgaacat agggcgattc cacgtaattt ttgcttgttc aatccattga 480 agtcttgtac catgtgtcgt ccatctgata tgtagatgtg accagcattc ttggctgaat 540 gggcaagtaa agaatagatg ttccaaagtt tcttcaatag gcgaatcaca aaggaggcaa 600 gtgtgattgt caccaatgtt ataatgtctc ctcttgagca tgtttcgaat gttgagtcta 660 tctgagagga ggagccagcc aaacacttct attttcatgg tgacctttga tttccatagc 720 catttgtatg tttggtgagc ttttagttct ctgaaatagt aggagtagta ttggctggca 780 gtgtagtctc ctttagccca aatgcacgtc catctgtcct cttcgtgggc caaggtgata 840 ggtgtcaata gttgttgtag atccatcaac tctgcatgtg cctgttcaga tagaggaagt 900 tggaaggttt cccccaacgt gggtgccgtt aagagagctt ggacagagat gtcttcattt 960 cttgtgaacg agaaggccct gggatagcta gaggcaagaa tactatccat ccaaagatct 1020 ttccaaagca aagtgttgcg gccgtcctga attgtgactt tggtgatgcc tctatagatg 1080 ggcataagct ttgtaatgtc tctccaccag aaggacacac atgcatccgt tgcatgtggg 1140 attttcgtgg tgtagtaggt gttccagatt agttccaccc acggtagatc ccagtgattg 1200 tagaatttgt gaagatattt aagcaacagg gcatcacttt gtgttctgag atctaagatg 1260 cccaacccac cacaatcttt tggcttgcaa atcatgctcc aagcagccag agagttacaa 1320 gattcccctt gctctgtctt tttggtccag agacatttcc tcctgatctt gtctatcagc 1380 tcaataatgg taatggggag cttgagtgtg cagagagcaa aaattaccag cgaagtgatc 1440 attgagttta gtaacgaaag ttttgctcca tatgagatca tgttgagagt agctgtgagg 1500 cggcgctcca ttttgcaaac caatggcatt aagtcctgaa cagatggccg agtggatccc 1560 aacggcagcc cgaggtaggt aaagggcatt ttgccagtca tgcagccaaa gatttgggca 1620 atgttgttgc tgagagagtc atcacagttg attgggatga gagtggattt ttggaagttg 1680 attttaaggc caatggaagt agcataatcc gacaaaattt gcttgatcgt ggcagcttgt 1740 gtttcacaag ctgggagaac cataattgtg tcgtcggcat attgaatgac cgggtactct 1800 ttttgggtgg cacacgcgaa aggaagctga ataaggcctt gagcaaaagc atcattaatg 1860 acggcttgaa ggaggtcagc tgccagcaca aaaaacaaag gagataacgg atctccttga 1920 cgtaccccac ttttacaatg aaattgtctc cccggtaaac cattaagaag gactgaggat 1980 ttgcctgaag tcagaatagc cttaatccag tgtagccatt tatcgttgaa tcccatgtgt 2040 tgcataatct ccaacattgc ttcatgttca atcatgtcaa acgccttagc aaaatcaagc 2100 ttaaggagga caattggttt ttttgaggtt tggcattgat aaatgtactc aaacgcccat 2160 gccagacatt cttgtataga cctacccttc agaaaaccat attgatttcg atgcactatt 2220 ttcaagatga tcttttgtaa acggttggtg aggagtttcg taatgatctt aagacaacaa 2280 ttgaggagag tgatgggcct gtaatcatta actgaagtag gtgcattaat ttttggaacc 2340 aaagtaatga aaccttcatt aatgctctct aggtttaagt taccctcatg gatttgattg 2400 caaagtttgt agaagtcttc cttgatcacg tgccagcatg atttgaggaa gtgccctgtg 2460 aaaccatctg gtcccggagc tctatccgca tgcatgaatt taatcacatc atcaatttct 2520 tggtgggtga agggcaccgt gagttggtcg agatcctcca ccttcttaat aattcgggct 2580 aaatcaaact tcatttcatg tcgcccagaa gtcccaagtc gtttcttgaa ggcttgaaat 2640 ataacagatt cttttcccgc atgatcttca acacagtacc catcatcagt gttaagtgag 2700 gcaatgttat ttctcctgta tctttctgaa gccattgctt ggaaaaaatt tggttgctca 2760 tcgccaaatt tcacccatct tatagtacat ctcttcctcc aatattctct ctgataatta 2820 agaagcctca gaatatgatt tttgaggatg cggcgaaaat tagattcagg agtagtgaga 2880 cgccttttat tttcaagttc atcaagttca aaaagagcca tgttggagtt ttcaatggca 2940 atagacagtt tagagatacc tttactccat ctcttgagat catacctcag gtgtttaaaa 3000 tttcgggata taacagtagc catgttggtc gaacgaattg gtttggacca agagtgagta 3060 accgtgtcca taaagccagt atgatgcacc caatacgatt cgaacctgaa aatcttggac 3120 cgaggaatgg tagtctcaat gcagaccaca caagggatgt gatcggaaac tggtcggcct 3180 agaggtttaa ctagggtttt agggtatgat gtagtccaat tggtgctcgt aaaaaaccag 3240 tcaatttgtt ccaatagggg gtccacctgc atattactcc aggtataagc acggcctttg 3300 atgggcagtt ccacaagatt ttggcttctg ataaaatcgt tgaaggtgat catgtcccca 3360 aaatttccac ctggcttatt acggttatct agggcacgaa tgaaattaaa gtcacctaga 3420 aggagccaat cttcattgtg tgggatattc aggtctagca actactgtat gaactcgcta 3480 cgttcaacac cctgacaggg gccgtaaaca ttcactcggg tccaatcctg tgccgattgt 3540 gtggattgaa agcggatcac cagggcaaag tccctagaag ctagaacagt agcagaaaaa 3600 aatgagttgt tccaaatagt ggcaattcca cccgaagcac cacgggccgg aacgaattca 3660 aatttatcaa aacgtcgagg gcaacaagac ttaataaagt tattatcaaa agattgcttc 3720 ttagtttcct gcagacatat aaccgcacac ccactagccg taatggcatt aaatagagca 3780 agttgcttag gttcagaatt taagccacga acattccaac aaagaacgtt ccagttaacc 3840 aaaagtacca tggataaaag aggaaagctt aagcgctaga taatgaggaa agagcatcct 3900 cattaacttc attgagcacc tctttagaga gctccgcagc aggtatatca catttgactg 3960 tgcctactag ttgaatcgtg gcaatgggag tgggtggtgg agcagcagta ctacctgcat 4020 cttcagaacg agccacggac tgaagtgccg atggattgat ccttggtttc accttagaag 4080 attttgggtt gctatcagtg atggaaggaa ctttgaagcc gtcgtatttg ttggacctgg 4140 tgctacgacg aagagacaca gaggacatgg gtagagccat tttccccttg cggatggtct 4200 cagcggagtc gggtcctgtt cccccaagag tagtagcaga gctatgtcca ggttcagcca 4260 agataccagc atagtagacc tcaggagtca cattagcaga gatcgggagt gtttccacag 4320 gagacacatc aactaagctg tgttcaggtt ccataattgc gtcagcagat gattccactt 4380 gagccacatg gtcagtaagt aggagaggtt cagactgcac atgctgagtg ggaacagaaa 4440 cccccagggg agcaaaatca gttgattggt ggaccaccag agtatccaag gccacatttg 4500 ccgggctgac caacgtgttc aaatcaggtg tgtcccggat ctcttcaatt tgcagagagg 4560 aagaggaaaa ttcccttgtc tgtttggttg tcgtaactgt caccaaatca ttctcaacag 4620 tgatcacagc tttaacctgc acgcaatcat tcctgagtcc aaaaccagtg ctccaaggac 4680 cagaggcatg atggtcgatc tcagaaagga attgagcctg atgaatgaga atccttggtt 4740 aatgagcatt gatgagatca cattaccttg ttcagtcata gcaaactgaa gtccattctg 4800 tgtgagagaa accaccactt ccagtgagtt cagttgagca gcaggtgtat ccattggata 4860 taaaggtgca gaagatgcag ccatatcaga gctttctcta tctgggctat ccaacaggtt 4920 attgtttggc acaataccat cctggacctg gaggccctcc tgagcgagcc aggcctgata 4980 gttatacaga gccggaggcg gagatggagg ccattgtccc caattagctt gaaagtgaac 5040 ctcgttgcct tggttgtctc catttgcatt gttagcagca ttagcattca tctgcgcatt 5100 ctgagccatc caattattga gctgagcttg ataaagttgt tccgctgtga gcccatctcc 5160 gtggagagga tgcgggatac catttgccgg aagaggatca atccccgccg gtggaatctc 5220 tggaagatga gcattccagt cactgctacg caacatagtg acacagactg tccaacagag 5280 gcgctcgcca cctagctgat gcataacaaa gctttttgga acaaggcaga tgaataactc 5340 taactttaag cagaactagc tttctatcac ctcttggatt attccaagta acaagctctc 5400 caaacttatc aactgacttg tgcatataat gcgaggtctg atagtcttgc gggaaaccaa 5460 tgtacaggag ccaaatctga gggccataag tagtctgccg catgttgaga gccgcatcat 5520 gaggaacaaa tgaaattact gtgtggatat ttccctcatc ctcatctagt ttaaaagtag 5580 tacccacagc agcatcccta gtaactgaat ccacaaatcc aaaaatccca actcctaatg 5640 gatgatcatc tatcttagtg gggaagaatt gagattcatg cagcaaacct tcaatggtat 5700 ggcgcaacgc tgccttgtgg tggaacggca cgaagcgatt gacttccgcg atggcgagga 5760 agtcatggcg cagcggggga gttgggctga tcaccatgtc atccctcacc tttcggtcct 5820 ccgggccgag ctcgatcgtc atgctctgca gaaggtaggg tatcacaatg acagggaagt 5880 tcgccatgcg caggtggtgg agctctggag cggtggtgct attagagcag agaagcaggg 5940 cagaatgcgt atcggcacgg gctctagtcc ccttgggaac ccagactaat ttcggctgcc 6000 tcccaccctg cctacgagac gaggaacgtg tctggaccga cccttagatg agcatcggac 6060 ggctgtaggc acaggtgaat cagtagcatt gcgaacgggc acaatatcat taattgaagg 6120 ctgattgatt tgatgtctca gggagactgc tgtgattgga tttgccataa tttctttgcc 6180 cttctcaagg tgataagcat cccgaatatt tccttcctta tgtaatccag agttacaggg 6240 atttcccatg cgtgtatcca aaaaaataga gccaaacttt ggtttccaat gcaatcttcg 6300 agccaatggg tgacaagaat gggtggtgtg gcccaagaaa gaacaaatgt ggcacctcaa 6360 gagcccaggg cagtgaaagt acaaatgggc cagcgaacca cagagatagc atgactgagg 6420 tccaggataa tgtagcccac aagcagatgg atcaactcta ggtggaccag tagagcacac 6480 acaaggctca gaggagcaga tgttgcaagc ttggtcaggg caagaatcaa cttggtgtcc 6540 tgagccattg caaagataac agatatttaa tctcttatta atgtattctg atggtgggac 6600 cgattggata gaccagattt tggcaatgtg actaacagag taaccaaatt tgcgctgatc 6660 attaatatag agcaacataa agggtgggat agcatcccaa caatcttgcc tgaacttact 6720 cccttgaaat tgattacgta gttgattgcc taaggaagga accaaagttt gaaaatcccc 6780 aatacggaca gtatttggca ataaatgctg attgacctcc atgtctcctg cccgtgaagg 6840 gcaatttccc tcaagaaaac taccaaaatg gaggttagta gtaaaagcat tgccttgaat 6900 atgcatgggg acattattac caaaagagag ctgcttgaat gagcgtggta aggtaccagc 6960 cggcggtgaa ctttccgatg atattccggt gactggagac aacctctgcg tgcacaaatc 7020 ttgagcaaga agatcaaatt ttgccaattc agataccgaa gaaggatcaa tagcatcaac 7080 ccgtgagtca aaagagaatg tagacttaat cgccacaggt ttgcgtgccg atatatctgc 7140 caaatgatga tccgaatgcc agctagaatc atttttgggc acagcatgcc tctcgggacg 7200 gtagagtgag aaatggcaga caaagtcggg ccaaatacga tccttgagat gataaatgaa 7260 atgcccaact cgattagacg ccacagagaa acgaaacttg cgatcatcca gccgtgtgat 7320 cgagaaaccc tcagcagaac ctccaataca acattgaaga gcaataccca cagattcaac 7380 cgagaggggg aaagaggcag aggagaagaa gaccaccaag aagaattcct tggtaccatt 7440 gctagaagaa aagtggaccg tagatccaaa acgacgacga acctgttctg caatcgcctg 7500 gccaggcttg aagtcccaat ggggaaggcc gtccatgtct actaggcaga ggagacgcca 7560 ttgctagggt ggagaggaga cgccgttcgg gctaagttgt caactagagg cgggttcgat 7620 ttgtttggtt ttcattgtct caggtcagtt tttttcacat tgattttctt ttattattat 7680 ttcttctcca attttctttc atttttcctt cttcttcttt gttatacctt gttttttgtt 7740 tcccaccggt tttctttggt tttctttttc ttcttcttta tatgtgggtt ttctttggtt 7800 ttttctcagt ttctccgtct tctttcgcct ttttttgttt ctttatctat ttctactggt 7860 tatttttgtt tcttttttta ttttctttgt ttctttctca gttttacagt tttctaaata 7920 catgacattt tttttcttaa atacaagttt tgaatatgtt tcatacacag tgaatatttt 7980 tttaatggaa aaataaaata tcgggcacaa catatacttt ttgtatacat caggaacatt 8040 tttatataca tgattaacat ttttgaatac agaatgaatt tttcaaaaat atatgttttt 8100 atatctactt ttattcaata tatgttgcac agttttgtat acctcaagac attttttaac 8160 acatgtttaa tattttctaa atacatgatc aacatttttc atacacattg tattttttgt 8220 aagcattttt tctatacgca tttaaaattt gcaaatgctt tatttttttt aaatgtttat 8280 gtaaagtttt gtagttaata taaacaaaag taaaaaaaga aagaaggaaa caaaaacacg 8340 aaaacaagaa aaaaccagaa aaatgaggat gtggcttgtg gccttgcatg ctgggcccac 8400 ccagttcg 8408 // ID HARB-4_SBi repbase; DNA; GRAS; 3329 BP. XX AC . XX DT 20-JAN-2010 (Rel. 15.02, Created) DT 20-JAN-2010 (Rel. 15.02, Last updated, Version 1) XX DE Harbinger-type DNA transposon - consensus. XX KW Harbinger; DNA transposon; Transposable Element; HARB-4_SB; KW HARB-4_SBi. XX OS Sorghum bicolor OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Sorghum. XX RN [1] RP 1-3329 RA Kojima K. and Jurka J.; RT "DNA transposons from Sorghum bicolor."; RL Repbase Reports 10(2), 119-119 (2010). XX DR [1] (Consensus) XX CC 3-bp TSDs. This consensus is generated from 5 sequences with >99% CC identity. XX SQ Sequence 3329 BP; 788 A; 767 C; 804 G; 970 T; 0 other; ggcctcgttc gtttcggccg gaatggcccg tttcgctgct caatccgtgt ggattgccac 60 cggcccgttt tgaaaccaga tccgcctcaa cttgtcgttc ggtttgggct ggcccaggaa 120 agaaatctgg cctggtttgg ccattccacc cctttccacg tctggaacaa agcccgacct 180 cctaccctcc ggaacggagt caggcctgag acggcgcagt cgagcaccac gagcagtcga 240 gaccccgcag ctgcaggccg tagtggaggc gacggcggcg acggcggggc ggtgcgagac 300 gacggcgacg cgaccgactc caaccctacg tccttcccct tcttcgtcct tctcgccggt 360 gatccctcgc tctccccttc gtcctcgtct tctctccctc ctctagggtt cttggatctt 420 gggcatggtg gttgcgattg atcgctgggc gacgacgcgc gcgtcggcga ctcttggtgc 480 gttcgcgctg aggtcgagca cccgcaggct ccacaggcgg gccagctcct tcggcgcggc 540 accgcgaagt gcgttccggt agttgtggta cacggggtcg aatgccgact ccaccacgaa 600 cgcgccgtcg tggaagtaga cgagcacggg gagcctcctc ccgcctccgc ctccgccact 660 ggcggccacg gggcgacggc tcggccggta cagccgcacc gcgaggcccg tcctgtggtc 720 cacgacgacg tccctggagg ccaccccggt gcgcgagtcc atggacgccg ggacgaacgt 780 cgtgcccatt aaccgctgca cgcggccgct cttgtactgg attaggaacg gcgagaagtc 840 gaacttcacc tccatgtttg ggtccgtcgc cctgctgcgg aatgccgacg acgctgctgc 900 ttccaccacc gctgctcctc ccctcgtcgc cgcctcccct gctctgagca acaacgcgca 960 gaggcagagc ccagcggtga cgagcaggac aggggaagca gccatggcct ccgaacaaca 1020 acatatatac tggtcctccg gatcggattt gtttatcttt ccctctgttt ctttattcag 1080 agagatccaa tttctgttct aataactaag agaggagcgg atgtggcctt gctgtgtcaa 1140 attcttgaga tcgagagcat tagttggggc atcaccattc aggcattcac caatcacacc 1200 gctagtagta gtttaactct caaaactgtt accagtcgta gcagtgtttc agcttgacag 1260 catcttccta atccgtgtgg tcagtgaaaa gtgagatgcc ttttcccaat ttccctggcc 1320 aatgagctta tcagcctgct tacgtacagc atataatagt gtgtggttac ctctgactgc 1380 actactacgt agcagcatgt ttatttacca ttggcgtgtt tttgttagga gtgtacagta 1440 cctacttgca gtttgcatgc atcagcacaa catgttacaa caacttggct taagaatgtt 1500 ttactgttct atactcctat gtgattgtaa tattatcagc aatttcagcg ttggtttctt 1560 gtagagaagt gtggcgtagc tccctgcagc gtcgcttcaa ttatcagcta tttcaacttg 1620 gcttagcacg tcgcttcaat tatcagctat ttcagcgttg gtttcttgtt atttggctca 1680 gaataaactc ttatttgact caaaaattgt ttcttgtcat ttgtagatct ctcctccacc 1740 atttagagtt ggggaaggtg aacctccgcc ttcttgggat ccagtaccaa ctccagaagg 1800 tactccttaa tatttatctt ctatacgaca ttgtcaaaat atttagcttt tatataacat 1860 ggttaataat atttagcttt tttataaaat tatatgcttc agttctacaa tgagtctatc 1920 actgcgagat cgcattagaa agaggaggga ggaggaagat gatgacatga tgctatttat 1980 tttccctgcc ttatatctta tgagttctgt tagaggggga gaaaggagga aacgccatac 2040 ttcggaagaa acaggcgagg ttaaagttcg tagactcctc gagggacatg tcaagaactg 2100 tcaagttgca tttaggatgg aaccatacat ctttagagat ttggcaactt accttagaag 2160 gaaaaggctt gttgttgaaa ctaggatcac tatggaggag aaattgggtt tcttctatac 2220 atgttgtcac aaattaagga cagtactact ttctagccct gttcaaccct tagagatgag 2280 aatattttga tagttgagtt gctagtaaga ggatttggac tatagagatg tatttctagt 2340 cagggatatg tttgttgtta gccaattatg ctgtccttcc atagtaagat cgaaagctga 2400 gatatgctcc tgtcataaat aaagacttca cttgtgctaa gaccaatact tgttcttata 2460 tttagctaaa aatagtcggt cagcagcaca agtaaatgga tgagttttac taaattacta 2520 ctctatttgc aaaacatctg tcctataagt catttggtca attaagttaa tacatttggt 2580 ttctgcaggc acatggcttt gacagttctt aaaagatatt gctgggagct tgttgttttg 2640 cttcatacga ttaagtggag tattggaagg ctagattacg ttcttttttg atttttgcat 2700 ttaatggagt tttgatctgg ttgatgttgc ctttgggtat ttttgtaatt tatattttgg 2760 atctaggaag catttcaagt ttaaacatga tattagcact ttgagtctga gtgaccgtag 2820 acattttttg gaaaaagatg agtggtcatg cacatgtgtg cgcctttgag ccggtgatca 2880 cgccgtgcaa gtagccagga aaaattttgc ttttaccatc ttgacagttt gcaaatgtaa 2940 ggctaaagtc agctgagatt ttgacaaggt tttcatcaat tgtccttgaa tggaagtcaa 3000 ttctaaaaaa aaattatcaa ttattgtttt ttatgatcat aactttgtta gtgcagaaat 3060 tgttattaag agtcagatgt tagttttgaa tattaaagtc atattgtgct tatctattga 3120 acatgttatg aatcttggct ggctgtttca ctgtatccca gttttcaatc ctggccggtt 3180 gaaccgaaca gtgcatttga aacagccggt ttaattccta gagagaaaac ggaggaagca 3240 tcgggttcta gtgactgacc aggatccact cgatcctggc ctggatgaga tactggtctg 3300 acaccaatac ggtggtgccg aacgaggcc 3329 // ID WHAM2_TM_LTR repbase; DNA; GRAS; 1419 BP. XX AC AF459639; XX DT 16-OCT-2002 (Rel. 4.3, Created) DT 16-OCT-2002 (Rel. 4.3, Last updated, Version 1) XX DE Triticum monococcum gypsy-type retrotransposon, WHAM2_TM_LTR, DE long terminal repeat. XX KW Long terminal repeat; retrotransposon; GYPSY superfamily; TREP264; KW WHAM_115G1-2; WHAM2_TM_LTR. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RP 1-1419 RA SanMiguel P., Ramakrishna W., Bennetzen L.J., Busso C. RA and Dubcovsky J.; RT "Transposable elements, genes and recombination in a 215-kb RT contig from wheat chromosome 5A."; RL Unpublished. XX RN [2] RP 1-1419 RA Dubcovsky J.; RT "Direct Submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR GenBank; AF459639; Positions 122986 124253. XX CC WHAM2_TM_LTR is a long terminal repeat from WHAM2 CC retrotransposon. XX SQ Sequence 1419 BP; 446 A; 279 C; 328 G; 366 T; 0 other; tgataaccca caagtatagg ggatcgcaac agttttcgag ggtagagtat tcaacccaaa 60 tttattgatt tgacacaagg ggagctaaag aatattctca agtattagca gctgagttgt 120 caattcaacc acacctggaa acttaatatc tgcagcagag tatttagtag caaagtaata 180 tgatagtagt ggtagcgata gtaaaaggta acggtaacaa aagtagtgtt tttggtattt 240 tgtagtgatg atagcaatag caacggaaaa gtaaataagc gaagaacaat atatggaaag 300 ctcgtaggca atggatcagt gatggagaat tatgccggat gcggttcatc atgtaacagt 360 cataacctag ggtgacacag aactagctcc aattcatcaa tgtaatgtag gcatgtattc 420 cgaatatagt catacgtgct tatggaaaag aacttgcatg acatcttttg tcctaccctc 480 ctgtggcagc ggggtcctag cggaaactaa gggatattaa ggcatccttt taatagagta 540 ccgaagcaaa gcattaacac atagtgaata catgaactcg tcaaactact gtcatcaccg 600 gtaagtatcc tgattattgt cacttcgggg ttaacggatc ataacacata ataggtgact 660 atagacttgc aagataggat caagaactct catatattga tgaaaaaata ataggttcag 720 atctgaaatc atggcactca ggccctagtg acaagcatta agcatggcaa agtcatagca 780 acatcaatct cagaaaatag tggatactag ggatcaaacc ctaacaaaac taactcgatt 840 acatgataaa tctcatccaa cccatcacct tccagcaagc ctacgatgga attactcacg 900 cacagcggtg agcatcatga aattggtgat ggaggatggt tgatgatgac gatggcaatg 960 gattcccctc tccggagccc cgaacggact ccagatcagc cctctcgaga ggttttaggg 1020 cttggcggcg gctccatatc ataaaacacg atgaatcctt cttctttatt tttttctccc 1080 ctaaagcaaa tatatagagt tggagtcgag gtcggaggag ctccaggggg cccatgaggt 1140 agggggcgcg ccctaggggg gcaggcgcgc ccccaccctc gtggctaggg tgtgggcccc 1200 tggtcttcat cttttgcaag gattttttat tattttcgaa aagatgttcc gtgaagtttc 1260 aggtcattcc gagaactttt gtttctgcac ataaataaca ccatggtaat tctgctgaaa 1320 atagcgtcag tccgggttag ttccattcaa atcatgcaag ttagagtcca aaacaagggc 1380 aaaagtgttt ggaaaagtag atacgatgga gacgtatca 1419 // ID BAGY2_HV_LTR repbase; DNA; GRAS; 1523 BP. XX AC AF254799; XX DT 16-OCT-2002 (Rel. 4.3, Created) DT 16-OCT-2002 (Rel. 4.3, Last updated, Version 1) XX DE Hordeum vulgare gypsy-type retrotransposon, BAGY2_HV_LTR, long DE terminal repeat. XX KW Long terminal repeat; retrotransposon; GYPSY superfamily; TREP206; KW BAGY2_HV_LTR. XX OS Hordeum vulgare OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Hordeum. XX RN [1] RP 1-1523 RA Shirasu K., Schulman H.A., Lahaye T. and Schulze-Lefert P.; RT "A contiguous 66 kb barley DNA sequence provides evidence for RT reversible genome expansion."; RL Genome Res 10(7), 908-915 (2000). XX RN [2] RP 1-1523 RA Wicker T.; RT "Direct Submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AF254799; Positions 11758 13280. XX SQ Sequence 1523 BP; 481 A; 341 C; 338 G; 363 T; 0 other; tgatgaccca caagtatagg ggatcaatca tagacctttc gataagtaag agtgtcgaac 60 ccaatgagga ggagcaggct ctcataaacg gttttcagca aggtaataac tgcaagcact 120 gaaagtagcg gtaacaagtg atcgtgtagt gaggtgaaac gtagctagcg aaaagtaaca 180 aggaacaagc agtagcaacg gtgcagcaag tggcccaatc ccttttgtag caagggacaa 240 gcctgaacaa agtcttataa gaggaaaaac gctcccgagg acacacggga atttctatca 300 tgctagtttc atcatgttca tatgattcac gtttgttact ttgatggttt gatatgtggg 360 tggaccggcg cttgggtact acccttactt ggacaagcat cccacttatg attaacccct 420 ctcgcaagca tccgcaacta tgaaagaaga attaagacaa cgtctaacca tagcattaaa 480 ctagtggatc caaataagcc ccttacgaag caatgcatag actggggttt aagcttctgt 540 cactccagca acccatcatc tagttactac tccccaatgc cttcctctag gcccaaatat 600 ggtgaagtgt tatgtagtcg atgttcacat aacaccactg gaggaaaaac aacatacaac 660 atatcaaaat accgaatgaa taccaaattc acatgactat tattagcatg acttatccca 720 tgtcctcagg aacaaaagta actactcaca aagcataatc ataatcatga tcagaggtgt 780 aatgaatagc atcaaggatc taaacataaa ctcttccacc aagtaatcga actagcatca 840 actacaagga gtaatcaaca ctactagcaa ccttctaagt accaatcgga gtcgcgagac 900 ggagattggt tacaagagat gaactaggga cttgagagga gatggtgctg atgaacatgt 960 tgatggagat gcctcccctc cgatgagagg agtgttggtg atgacgatgg cgacgatttc 1020 cccctgcggg agggaagttt ccccggcagg atcgtcgtgc cggagctcta gattggatct 1080 gctcaagttc cgcctcgtgg cggcgaagaa tccacgaaaa agctctaccc gggtcttctt 1140 ctgagaccaa ttccataggc cctgagggtg cacgtgggcc accagggtgc ccacaagcaa 1200 tattgcggga aagaagtgtt agacgggagc aaccaggctt gtggccccct ggttgctccc 1260 ctctaacact tctttcaccc agtatttttt atatattcca aaaaaatcca cgttgatttt 1320 cagggcattt ggagttgcgc agaatagagg actcatactt gctccttttc tagtccagaa 1380 ttccagctgc cggtattctc cctattcaaa taaaccttgc aaaataagag agaaaaggta 1440 taagtaaggt tccacaaagt gtaataatag tccataaagc gataaatatc aacatgaaag 1500 catgatgcaa aatggatgca tca 1523 // ID Copia3_HV_LTR repbase; DNA; GRAS; 1572 BP. XX AC . XX DT 06-FEB-2003 (Rel. 8.01, Created) DT 06-FEB-2003 (Rel. 8.01, Last updated, Version 1) XX DE Copia-like LTR retrotransposon. XX KW Copia; LTR Retrotransposon; Transposable Element; KW endogenous retrovirus; Non-LTR retrotransposon; COPIA superfamily; KW TREP704; Inga; Copia3_HV; Copia3_HV_LTR; Copia3_HV_I. XX OS Hordeum vulgare OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Hordeum. XX SQ Sequence 1572 BP; 382 A; 418 C; 323 G; 449 T; 0 other; tgaaagtgca gtcatgccct taatcgagtt ttggtgttaa tgacaacaca tacataggaa 60 actaatctta tttgttgagt gtatcttagg atggcaagta ctcttagtag attgagaatt 120 atgtgccgag gtggtctgag aagatcggga cttatatgtc aagaaggctc gggattgaga 180 aaagatgatg tagcctatcc tttaaattta ctattcttga gtatagggat cccgcattat 240 taagagggga tcacgggttt tgcgatgaac ttgctcatac tacatctcta cttttctgct 300 tataccacat ctccactgct ctgctcttat ctcaaaacag aaccaatgcc tcggacatcc 360 ggcttcctct ggacatccga cggtcggacg cccgaccgct tcggaaatcc ggaaccttat 420 accagagaaa tttgagtcaa ataactcgga cttccggcct cctcttgtcg ttcgagggcc 480 ggatgtccga cctccttcgg aaatccggaa ccttgcacca gagaaatttg agtcaaataa 540 ctcggacttc cggcctcctc ctgtagttcg agggccggac gtcccacctc cttcggaaat 600 ccgaaacctt gcaccagaga aatttgagtc aaataactcg gacttccggc ctcctcctgt 660 catccggtcc ctgtttgact acacagtggt tccagatata tatacatccc tcaaacgacc 720 gacccctgtc ggacgtccga ccccttgtgg gcatccggac atccgagaac cgccggatgt 780 ccgaccactg tcagacttaa gtgaccccaa cggttgtttt agtctcccca ctatatatac 840 cccccctccc acttcgtgag agggtgttca acacagcaag aacacttaca agaacacctt 900 tctcctcact cactcttgcc tacacccaat cttagatccc aagagcattt gtgagcccct 960 ttgagtgttg ttccaatcaa aagatagatc atctccttct cctcctctcc accaaagtga 1020 tttgtgattt gagcaagttt tgagcaatcc ccgtgatctt gttactcttg gaggttggag 1080 actcctaggc ggtaggagtc ttcggagagg aatcaaacca ttgtgattac ccccagaaag 1140 tttgtgaagg tttggaagcc acctcaaggc ttaccactag tggttgagaa acgccttcgt 1200 ggagttttat caaagggaga atagggtgag ccttcgtggc gttggtgtgc cttcgtggta 1260 acatccaccc ctctaacggt gacgtagctt cccccctcca aggaagtgaa caccgggata 1320 catcctcgtc tctcttggag tttcggttat ccctaaccct aactctctac ttgtgttaat 1380 ccttattacg tacttgcatt tgattattgt ttactggctg cgttacttta ctctaaatag 1440 cttactcttt gtctttgcaa ttattaggct cacgctcata ttccgcacca ttgcctaaaa 1500 ttgctaagta actattaaaa tttggaactg tacctattca ccccccctct aggtccatct 1560 cgatcctttt ca 1572 // ID TSB1 repbase; DNA; GRAS; 890 BP. XX AC . XX DT 02-MAY-2002 (Rel. 7.04, Created) DT 16-AUG-2004 (Rel. 9.07, Last updated, Version 2) XX DE Sorghum bicolor non-autonomous DNA transposon - a consensus. XX KW DNA transposon; Transposable Element; CANDYSTRIPE1; TSB1. XX OS Sorghum bicolor OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Sorghum. XX RN [1] RP 1-890 RA Chopra S., Brendel V., Zhang J., Axtell D.J. and Peterson T.; RT "Molecular characterization of a mutable pigmentation phenotype RT and isolation of the first active transposable element from RT Sorghum bicolor."; RL Proc. Natl. Acad. Sci. U.S.A 96(26), 15330-15335 (1999). XX RN [2] RP 1-890 RA Jurka J. and Drazkiewicz A.; RT "TSB1: a non-autonomous DNA transposon from Sorghum bicolor."; RL Repbase Reports 2(4), 29-29 (2002). XX DR [2] (Consensus) XX CC Similar in part to CANDYSTRIPE1 [1]. XX SQ Sequence 890 BP; 266 A; 135 C; 132 G; 280 T; 77 other; taaggccttg tttagttcac accaaaattt aaaaaatttt caagattctc cgtcacatcg 60 aatcttgcgg cacatgcatg aagcattaaa tatagataaa aataaaaact aattacacag 120 tttacctgta attngcgaga cgaatctttt gagcctagtt agtctatgat tggacaatat 180 ttgtcaaata caaacgaaag tgctacagta tcgaaatcca aaaaattttc ryntgcaact 240 aaacaaggcc taangcntgn cgcaacacng gcnccnngta scnttngtcc canaaacaaa 300 aggtnatcat catngtactt tcnatngttc aamaanaatn tanaacnaac actttnntca 360 atgcaagntg cntttagntn gccnattaag aganntcntc ntangtccct gctaaatntt 420 ttttagaann aaatntacta annaggttta ntttcaatag ktnagatcta ttanttncnn 480 cttagnacac tgcgtagata ttggntttga ttttttcnat nttggagcat gatctgttnt 540 ntntgagttt atgatatnna agtnnnnann tntaattgtc acnaaaacan gacaccnttg 600 tgatggatna agnaagngct angacaanat gttttactta ggccttgttt agttccgaaa 660 attttttgcg atttcgacac tgtagcactt tcgtttttat ttgacaaata ttgtccaatc 720 atggactaac taggcttaaa agattcgtct cgcgatttac aggtaaactg tgcaattagt 780 ttttattttt atctatattt aatgcttcat gcatgtgccg taagattcga tgtgacggaa 840 aatcttgaaa anttttnnat nattttttgg gtgaactaaa caaggcctta 890 // ID WHAM3_TM_LTR repbase; DNA; GRAS; 1411 BP. XX AC AF459639; XX DT 16-OCT-2002 (Rel. 4.3, Created) DT 16-OCT-2002 (Rel. 4.3, Last updated, Version 1) XX DE Triticum monococcum gypsy-type retrotransposon, WHAM3_TM_LTR, DE long terminal repeat. XX KW Long terminal repeat; retrotransposon; GYPSY superfamily; TREP265; KW WHAM_116F2-1; WHAM3_TM_LTR. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RP 1-1411 RA SanMiguel P., Ramakrishna W., Bennetzen L.J., Busso C. RA and Dubcovsky J.; RT "Transposable elements, genes and recombination in a 215-kb RT contig from wheat chromosome 5A."; RL Unpublished. XX RN [2] RP 1-1411 RA Dubcovsky J.; RT "Direct Submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR Genbank; AF459639; Positions 61148 62558. XX CC WHAM3_TM_LTR is a long terminal repeat from WHAM3 CC retrotransposon. XX SQ Sequence 1411 BP; 442 A; 292 C; 321 G; 356 T; 0 other; tgataaccca caagtatagg cgatcgcaac agctttcgag ggtagagtat tcaacccaaa 60 tttattgatt cgacacaagg gcagccgaag aatattctca agtattagca gctgagttgt 120 caattcaacc acacctggaa acttaatatc tgcagcaaag tgtttagtag caaagtaata 180 tgatagtggt ggtagcggca acaaaagtaa agacagcaaa agtaatgttt ttggtatttt 240 gtagtgattg taacagtagc agcgggaaag taaataagcg agaacgagta tatggaaaac 300 tcgtaggcac cggatcagtg atggataatt atgccggatg cggttcatca tgtatcagcc 360 ataacataag gtgacacaga actagctcca attcatcaat gtgatgtagg catgtattcc 420 gtatatagtc atacgtgctt atggaaaaga acttgcatga catcttttgt cctaccctcc 480 cgtggtagag ggtcctattg gaaactaagg gatattaagg cctcctttta atagagaacc 540 ggaacaaagc attagcacat agtgaataca tgaactcctc aaactatggt catcaccggg 600 agtggtcccg attattgtca cttcggggtt gccggatcat aacacatagt aggtgactat 660 agacttgcaa gataggatca agaactcaca tatattcatg aaaaaataat aggttcagat 720 ctgaaatcat ggcactcggg ccctagtgac aagcattaag catagcaaag tcataacaac 780 atcaatctca gaacatagtg gatactaggg atcaaaccct aacaaaacaa actcgattac 840 atgataaatc tcatccaacc catcaccgtc cagcaagcct acgatggaat tactcacgca 900 cgacagtgag catcatgaaa ttggtgatgg aggatggttg atgatgacaa cggcgacgaa 960 tccccctctc cggagccctg aacggactcc aaatcagccc tctcgagagg ttttagggct 1020 tggcagcggc tccgtattgt aaaacgcgat aatttcttct ccctaatttt tttcacttcg 1080 aaagcaaata tatagagttg gagttggcat tggagggcat ccagggggcc caggaggtag 1140 gggggcgcgc ccccaccctc gtggacaggg tgtgggcccc ctggtcttca tctttggcga 1200 ggatttatta ttattttttc taagatgttc cgtggagttt caggtcattc cgagaatatt 1260 tgttttctgc acataaaaca acaccatggc aattctgctg aaaatagcat cagttcgggt 1320 tagttccatt caaatcatac aagttagagt ccaaaacaag ggcaaaagtg tttggaaaag 1380 tagatacgac ggagacgtat caactccccc a 1411 // ID TY3LTR_ZM repbase; DNA; GRAS; 482 BP. XX AC U03953; XX DT 11-NOV-1996 (Rel. 2.2, Created) DT 25-MAR-1997 (Rel. 3, Last updated, Version 2) XX DE Zea mays mays clone mays53 retrotransposon, partial LTR sequence. XX KW LTR; retrotransposon; ZMTY3LTR; TY3LTR_ZM. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-482 RA Purugganan D.M. and Wessler R.S.; RT "Molecular Evolution of a Plant Ty3/gypsy-like Retrotransposon."; RL Unpublished. XX RN [2] RP 1-482 RA Purugganan D.M.; RT "Direct Submission."; RL Direct Submission to Repbase Update (03-DEC-1993)Michael D. RL Purugganan, Biology, University of California at San Diego, 9500 RL Gilman Drive, La Jolla, CA 92093, USA. XX DR GenBank; U03953; Positions 1 482. XX SQ Sequence 482 BP; 119 A; 115 C; 131 G; 117 T; 0 other; gaaggagaat gccgggaaag aagaagagaa ggctggcgtt caaagaatgg gccgcagaat 60 tagaaggccg aatccgcgag tttcaggagc tgaatgggtg aactagttgt gggctggtgg 120 tcgtattggg ccaaattggc ttgtaagacg ttagtagtat aaactgaata atgaagacag 180 agtgaaggga gaagaaatta atcccattca gacttccact tcttcgtttc ttgcctgctc 240 ttccgatatc cttcctgttc ctcttcttct tcgtcggcgg cgagcgtcat cggacgacca 300 gttcgttgac aattggtatc ggcatccaag ttccctgcgg cgcctccgta tttcacccgt 360 cgcgcgagga tggcgggcgc agcagacccc agtgttgcag cggctttgga tgcgcaatcc 420 aaatccatcg acatccagtc caggactctt gcgacgcaat caaaaattct tcaacagtta 480 tc 482 // ID CINFUL1_ZM_LTR repbase; DNA; GRAS; 628 BP. XX AC AF448416; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 16-AUG-2004 (Rel. 9.07, Last updated, Version 2) XX DE Zea mays retrotransposon CINFUL1_ZM_LTR, long terminal repeat. XX KW LTR Retrotransposon; Transposable Element; CINFUL1_ZM_LTR; KW Long terminal repeat; retrotransposon. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-628 RA Fu H. and Dooner K.H.; RT "Intraspecific violation of genetic colinearity and its RT implications in maize."; RL Proc. Natl. Acad. Sci. U.S.A 99(14), 9573-9578 (2002). XX DR Genbank; AF448416; Positions 20959 21586. XX SQ Sequence 628 BP; 181 A; 115 C; 123 G; 209 T; 0 other; tgttgggacc atgcttcgtc gccgaaggtc ctgcagaaag agacagcttc ggctgaagct 60 gctcgtacgt gacgccgaag gcaccattca tgaagcttcg gtattacggc atatccgaag 120 atgaagggtc gaaccgactt aaagatagaa tgacctttta gtccataggg gtctgagtca 180 ttgttgtaaa cttttatgag gggcatgatt gtaattcttc acaggctgtg tcctgtgcct 240 ataaatagtg aacaatattc ctttactgtt cacgcattcc tgtaattgca aacgcttcaa 300 tcgggaatta ttatttgtca aggcagaggt ataaatgttc ataaaacatt atgttcaagc 360 atcttaaatt catatgataa gatatgtgaa taatgtcact tattttcgat atattcatct 420 ttaatatttc acattgcata ttactttgta ttaactttgt aattttaatt acgaaggtat 480 aaccttcgta atattctgct catgatcttc gtccgaagtt cattaaatcc ttggggaaat 540 aatgcttcag cggacgaagg gcattaatat ttaacatttt atgttgcctt gttcttaatc 600 catagcattt gagagcaagt ccccaaca 628 // ID MuDR1_HV repbase; DNA; GRAS; 6460 BP. XX AC . XX DT 06-FEB-2003 (Rel. 8.01, Created) DT 06-FEB-2003 (Rel. 8.01, Last updated, Version 1) XX DE MuDR-like DNA transposon. XX KW MuDR; DNA transposon; Transposable Element; transposase; KW MUDR superfamily; TREP731; HORMU; MuDR1_HV. XX OS Hordeum vulgare OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Hordeum. XX RN [1] RA Wicker T.; RT "Direct submission."; RL Direct Submission to Repbase Update (from TREP) (31-DEC-2002).. XX SQ Sequence 6460 BP; 1787 A; 1376 C; 1587 G; 1710 T; 0 other; gaatttttgt ccaaaaggac cccctgtcga acgagattgc caaaagagac cagctgcgaa 60 tggaaaggag ggaaaggacc ccgaccccgg gtggcggcag gcgcgccagg cggcacgtgg 120 cacctgccgc caccccacga ggcggctggg gcctgccgcc acgggcgcag gcggccggca 180 gggctgccgc cacgaggcca ggcggccgac gccagatccc gttcccgccc ggctgcaacg 240 taacggcgac agagcggtgg gccctgccgc ctcgggagca ggcggccagg cgggccctgc 300 cgcctcggga ggaggcggcc gacactgttt ccgcgcggca gaccggccga cactgttgct 360 gattgcgctg atttccgtgc gcgctgattc ccaggctaag acagatattt cgcgctccca 420 ccgacgaaac agtgggaatt ttcccccctc ccaccgacga aacagtgcga aacttcttct 480 ttataagcga accgcgtcgc tgcctcctct ctcactctct tctcctgccg ttgcctcccg 540 tgtcactctc ttctctttct ctttctcact ctcttctctt tctctcaaga gctactccgt 600 atgaatgttt aagtggcgat ttaggacggt ttaaagttag attttgaaga cgttgtagtt 660 gaagaaaaga tagatcaagg taagagcttt ccatatctgt tggtcgtgtt tgcatgcatg 720 atgtatttat tttgtttgat tagtttctaa gtatgtgttt tcttttgtct tagggagcgt 780 attatcactt ttgtggaact attttgaaga cgttgtagtt gaagaaaaga tagatcaagg 840 taagagcttt ccatttgtgt tggtcgtgtt tgcttgcatg atgtttttat tttgtttgat 900 tagtttctaa gtatgtgttt tcttttgtct tagggagcgt attatcactt ttgtggaact 960 attttgtcat gcgatatgaa ctactaagtt gaagatcaag gtatgagact ttgttcatat 1020 ttgtgttcat gtgataatag gtcgactatg ttcatatatt accgatgatt tattcgtgtt 1080 tgcatgcaac tggtatttag aaaggagccg gaaaaatgcc tatgtaacta gcatttttgt 1140 aaaaaacatg taataatatg ttagctccat tagtattatt acatgcaaga cgcgtgtgta 1200 atatatttgt ttatttgata atttgtcaac cccgtagaaa tatgactcgt gatatatata 1260 tatatatata tatatatata tatatatata tatatatata tatatatgca tgcagtatgt 1320 atttttagac ttttgctagc acggaaataa ttatgtgtgt aatatttttg tttatatgaa 1380 aataggtgga attcgctgat attattctgg tgatatatta tattcggaac gatatcctta 1440 tttaaaccag aggtatgaat gacatattgt aattcatctt ctatttattt tatagatgta 1500 gtgtcacgat aaatgataca atataaatta ttatgcgtag atgtaatgga tgttgttaaa 1560 ttgttatatg taaaaaagat aagtaatgga tgttgttatt acaatgtaaa tataaaaata 1620 tgatttttaa tggactaacg atgtaaatat agctgctcgt taggtactat ggaaaatttg 1680 ttagtgtttt atgggcacat cgtacgtgtg ggtccttctg gtgtggatgt gtctaggtgc 1740 gggatgacta cggttgtagt gaaagacatg gttaatgtag agtacgcgac agttagaagg 1800 tgcatccgat cggtgtttgg ttcagcgatg aatggaaaaa aatgaccctg gaggctttcg 1860 tggttgaggg aggaaatcgt tgggttctgc gacgggttac tggtgaaaga gcatgggcgt 1920 cgtacatggg ttttgcaagc aatcccaata actccatgta tggacaaccc atggtttatg 1980 tggagttcat ttctgccagt gatgtcgccg agtgcagtag cagtgccggt gaggccgagt 2040 tggccataac tgtaaccccc gacgccggcc catcggaacc aaggggtggc caacaagtgg 2100 ccataactgt agcccccgac gccggcccaa cggaaccaac aggtggccaa caagtgtatg 2160 acacgggata ttggtctgcg gttgttgaca tgagcgaaca tgtcgaggga ttgccggagg 2220 cgctagatga tgacgatgat ggtcattctt ctgcgtcttc ggaatcagat gatgatgaag 2280 ttgttcctcc tgagaatgcg gtcgctgcag caatcaaccc agagttttta caggttatga 2340 gcatcaccaa tgaatttcac tctgttgctg acctagacgc ggggagtctg gccattggac 2400 agattttccc agataagaaa tctgctaaac aagcaataca tagctatgca attgctatac 2460 acaggcaaca tagagtgaag cagtctgata aaaaggagtt gaagctcata tgcatccatc 2520 gcgaagcggg ttgccgcgga agagttattg ctcgccagaa gcctggggta tgtcagccat 2580 ggcatgtcac aaaaatagag caacatggtt gtgagcaaac cggcactctt tcagagcacc 2640 gcaatgtgac tgcagaatat gtgtcacagg tgatgcaaac cattgtgcag caaagtctta 2700 atattagtat tagggctttg cgtgcaactg catctgatct gattggtttc cctgtcagct 2760 atagcaaggc tcgtcatgca aaggaaaaga tatttcagag gttgtatgga acctatgagg 2820 aggcgtactc ttttgcccct agaatgttgc atcagatttc acttgctaac agggggactc 2880 aagttttccg gaaagaacgt ccaaatccat tgaacccgga cgagcaaatc ctggaccgct 2940 tattctgggc attcgcccag actatacaag cattcaagca ttgtcgtccg gttgtatcaa 3000 ttgatggtac atttctcact ggaaagtaca agggcacact cttagtggcg atggcagctg 3060 atgcaaacaa tcaacttctt cctattgcct atgcactagt ggagagcgaa aacaaacata 3120 gttggctatg gttcctgtgt tgcctgaaga tgggtgtcat caaagatcgg gaaggggttt 3180 gcatcatctc tgatcgcaac accggactat taagcgcgct tgagataatt aaggcttcac 3240 aagatccaga ttgggggtgg cccgatctgg agacaaggtg gtgcatgagg catttggcag 3300 ctaattttta ttcgaaattc aaaaacaaag attggttcaa gctattcaag aggatgtgca 3360 tgcaaaaaac tacagcaaaa atgaatgcta tctgggcagg tatcaatggt cagatcgagc 3420 gcgcatccct cccggcgaga gaagaccgga ggggtcgtcg aacagcaata aatttgagcc 3480 agtggattaa tgagaattgt ctcaatttgt acaagtgggc gcagcctcat gacactgacg 3540 ctagatatgg tataatgaca agcaacatgt ccgaggtgta caatggtgtt cttaaagggg 3600 tgagggcact acctatcaca gcactaattg atgaaacttg gaaccggact gtgtaatact 3660 ttgcagatag agtcaccgtt gccaaggcgc tagttgattt gaacaagacc tggtctgaga 3720 agatgcaaag acatcttgat gacaaagcaa ataagtcgca aagacatggg tgcaggcagg 3780 tagatgcact taggaataaa tgggaagtta gtgtgcgagc aaagtttgtg aagggtcatc 3840 acaggggagc aaaaaaacaa gctgtgacgc ttggcgcaac ctcgtatgag tgcacttgca 3900 acaagcccaa gcttctggga tatccttgca gtcacgtatt gcgggcagct gcagatcaac 3960 aaattagtgt cgagccatac gtatcaccat actttaacat gcacaatttg tacaacactt 4020 ggaacggtga gttttgggca tgggacattg atacgaacta caagcaatta tggccagaag 4080 gcaccacatg ggttccagat cccgcattga tgcgaaccag caagggacgg cgtcagtcta 4140 ggcgtccgca atgacatgga ccacagccag ttgggagaac caaggcgatg ccgcatatgt 4200 aggtgtgctg gtcacccgcg tagggagtgt ccgtatcgta acaataacac tgcatgatat 4260 gtaatcatgc tatgtatttt aatttaatcg tgatgtaata ttcggaatat gtattttaat 4320 ttcatcgtga tgtaatattc agaatatgta ttttaattta atcgtgatat gatattcgga 4380 atatgtattt taatttcatc gtgatgcgtg ggcaacctca ttcagtagcg tgtcactact 4440 gatgagttcg tcccatgaaa ctattctatt atctatcttg aaattgctag ctaagcgcag 4500 aagacactcg gacataccac tatgaaaact acgatcgaaa ggataatgag acattttcag 4560 cacactcctt acccaccttg gtctggaggg ggttttatag gtgcaacaga gcgagacgaa 4620 taactaatgg cgggaaaacg aggagggaaa gcgaggcggg aaagcgaggg agggaaagcg 4680 agggcgggaa agcgaggcgg gaacaaaatg gcggcaaagc tatacgcggg ataaaatggc 4740 gggaaagcga ggcgggaaat aaatggcggg ataaaatgaa catacacgta gctgaaatta 4800 agatacccat tgcggaaact aagatacaca ttactgaaaa taagatacaa tttgccgaaa 4860 ttaagataca tcttacagaa attaagatac aactaagaca acttaacata caataaaata 4920 aatctactga gtccaacgtg gatattttcc ttttccatca ccagcttctt ctgctgcctt 4980 ggcggcacga gccctttctc tctttctctc cctctcagct tcacgggcct gttcccgctg 5040 tctgtaaacc tcctccagcc gaagtttctc ttcttgattt ttccttttca tctcatcaag 5100 aaaagccctc tgctccacac agtaatcttc ccactctttc ttctgctctg ctttctcctc 5160 tgcttcagcc ttctcacgac gctcttccaa gtccaagcta gcccatgcac gacgacctct 5220 ttcacgaatc tcggtcaccg cccagtccgg catttccgtg tcaatccaac gatagtacat 5280 gcagagagga ggaggagact aaaggatgga tcagattcaa gtaaacaata atatcaaata 5340 acaataatct ggatgacttg agcataccgg aggcctgacg tacgcagaaa tagattcggg 5400 tggatcagat tcataattgg cgcacatgaa aaacttcatg cccaaccaat ctgaaaaatc 5460 catcacctcc ttcaccttgc agacatctcc gcaccaacac cgaactgctt ccaccccccg 5520 aggcaagctt gcactctgca ttttcctagg cctaatgctc tgatccgaac aaggcaaact 5580 catactgact atggaggtgc aggtgctttg aagtctggct gatggtgaag agagtttcac 5640 tccctgcctc cttttatagg ccccgccgga tgtctacgcg ggaaaaaagg gcgcgaaaac 5700 gagaaactgc agcgggaaaa tttggcggga aacttaggtg ggaaaataac gcgtgggaat 5760 ttagccggga aactgcagca ggaaacttag gcgcacatga ctatatacaa agcaaaatga 5820 cagaatctac attctaaaat gagtccatat acatcatatg tagtcttcta gtacaaactt 5880 cttaaaaaac ttatatttag gaaatctccc tccgtaaaaa ataaactccc tccgttgcta 5940 aatataaggc attttaaaaa ttgtacaata aactacatac ggatgtacat agatatactt 6000 tagagtataa attaactcat tttgttccgt atgtagtctc cgaatgaaat acctaaaagg 6060 tcttatattt tggaacggat ggattacatc caataccgca tgcaacttag agcggcaaaa 6120 tttcgagcgg gaagcgcggc ctcgtagtca gcgaaataca tccaataccg catgcctcga 6180 gcgggaagag cagcacagag cggccggccg ccttgggagg tggcggcagg gcccacccag 6240 cgttgtccgt tacgggcagg cgtggcggga acggggtgac cagccggccg cctcagctgg 6300 tggcggcagc cccagccgcc tcgggcggtg gcggcaggtg ccacgtgccg cctggcgcgc 6360 ctgccgccac ccggggtggg ggtcctttcc cttctttcca ttcgcagctg gtctcttttg 6420 acaatctcgt tcgacagggg gtccttttgg acaaaaattc 6460 // ID FATIMA_TM_I repbase; DNA; GRAS; 8124 BP. XX AC AF326781; XX DT 16-OCT-2002 (Rel. 7.09, Created) DT 16-OCT-2002 (Rel. 7.09, Last updated, Version 1) XX DE Triticum monococcum gypsy-type retrotransposon, FATIMA_TM_I, DE internal region. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW GYPSY superfamily; target site duplication; internal region; KW TREP235; FATIMA_TM_I. XX OS Triticum monococcum OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Pooideae; Triticeae; Triticum. XX RN [1] RA Wicker T., Stein N., Albar L., Feuillet C., Schlagenhauf E. RA and Keller B.; RT "Analysis of a contiguous 211 kb sequence in diploid wheat RT (Triticum monococcum L.) reveals multiple mechanisms of genome RT evolution."; RL Plant J 26(3), 307-316 (2001). XX RN [2] RA Wicker T.; RT "Direct submission."; RL Direct Submission to Repbase Update (from TREP) (02-APR-2002).. XX DR GenBank; AF326781; Positions 103609 104293. XX CC Internal region of gypsy-type FATIMA retrotransposon. CC 5bp target site duplications. XX SQ Sequence 8124 BP; 1786 A; 2116 C; 2283 G; 1939 T; 0 other; atagcccctg aaccaggttt caatgacgac gagtccgacg cgcagattgt cttcgacatt 60 gcaaggcggg ttcctcctcc aaattcttca taaaagtttg taaacaccaa gagtagtgtc 120 tggctctgca aaataagttt ccacgtattg ccacagagag aataatatta acacaaatct 180 aatctgctga cgtattccgc agcgtgacat cacactacgg ccaagccttt attcgaatcg 240 ttttcacttt tccacctcag cgtgttttgc gaggcggttt ccttggcacg tcttgtcaaa 300 gcagagatcg tgtcccccat ttacgggatt ctcatcaata cggacgtggg taacccaacc 360 gtgcaattta tcacgacgct tgggaggcaa gcgagtttta ctaggctggt ggggacgcgt 420 agtcgcatcc gcgcatataa ggggataagg atccaccttt ttacctacgc cttcttcctc 480 ctttgcccac ccgagctcca gcgcccaagc ccgcacttcc tacctcaatc ttctccaaca 540 atgtccggag cgggaggcaa gtggacggtc tcctccgtca cgaagggcca tgtcaaaaag 600 ctaaggaagg ccggatactt gtccgaagac atcgcgcacc ggcttcctga ggaggggtag 660 cttctcccca ccccaaggtc ccatgagagg gtagtatttc ttccccactt cctctgcgga 720 ctgggtattc ctctccaccc atttgtccgt gggctcatgt tctattatgg cctagatttc 780 cacgatttgg ccccgaactt catcctcaat atctcggcgt ttatcgtcgt gtgcgaggct 840 ttcctctgca tccaccccca tttcggcctc tggctcaaga ccttcaacgt caagccaaag 900 gtggtgcgca gcaaccaggc ggagtgcgga ggtgccatgg cgggcaaaat agccaacgtc 960 ctatgcctcg agggctcctt tgtggagacc ttgaagggct ggcagtcagg gtggttttac 1020 atcaccgagc cacgcgatcc aaagtggatc gtagcccctg aattccgatc cggaccccct 1080 acacggctca cgtcctggaa ggagacgggc ttgtcgtggg gcgacgaaga agaggtgacc 1140 ggactgcaaa aatgcatcca gtccctaggt gaacaagcag ctcaagcttg tcaacgtagt 1200 ccaggtcatg ctcgtccgcc cgatccttcc gtgtcaagaa cgcgacttca atttgtggga 1260 gttcaacccg gcgcaccacc ggactctgag caggctcttc gacacaacgt acaaagatgt 1320 ctggaagggg ctaaccaaag gcgccgaggc tcccacatcc gcctccgaag accgcggatt 1380 cagctcgcag cgtcctgctg gcgaggtaag atattttcat cttttacagg atgttaagtt 1440 ttctcatagt ttgactctat gcgggatcta aactccctca cctttgacag gcttggcagg 1500 cgaagtccgg actgattaac tgtccggctc ccttgcccga agacccagcc cctgctcccc 1560 tagtgaagct gctggttccg gcaccttata tggtgccgga gaagaaggcc aagaagaaga 1620 aggccacggg gactcaaaag agttcccggc atatggtggt gtcggactcg tcgtccgacg 1680 agtccgagac gcactcctcc cgtgaagacg aggaggagga agaagaaacc tctccccctc 1740 cagcgggggg aggaaacaag aggaaggccg ccccaatagg gggcgccgaa gggtccaaga 1800 agaggaaaac ccctccgccg gactacgccc ccgacgccga cgaggacgaa gaggagtggc 1860 cggatagggc caagcgtctg gcgagatcgt aagtgttcgg ataccagagt aactcatgat 1920 attccttttg ttgcacaact ttccctaatg tcgaatataa tcatgcagcc cgcccaagga 1980 cgggctcgac gagttgtcga gcggctccct ggattcatca gacgtgaatt cagttccgcc 2040 cgctgcctcc ccctgtgccg cgctgacgcc aaagtggcgt cgcgacaatc tccggggcaa 2100 gaggaggtgg tccaggagga gccacgaggc gacctcccgg actccaggag tgaaggggac 2160 aagacccccc agggctccaa gtccggcttt aagccggaca ccgcgccgga atcatcaacg 2220 gttccggacc gcggcaggcg aactcctgcc aagaggagca agcctattga gccagcgtcc 2280 tccgtccatc cggaggcgcc ggacaatctg ttggaggtgc ttaagggcgc ctccatcgac 2340 gaggagcacc gtaccatcat gagtacgatg gtccagaagg ttcggtccgc caaaagcgga 2400 ctgactgaag cttgtgctag ccttctaaca ggcttcgagg taagtaaaaa atatgtaaaa 2460 atattaccgc atagacagta gcccctgatg ctctgtttgg cgttcggaaa gaaaagccga 2520 atagaggatc tattaaatat cacaggagtc taactaaaaa ggagtcaata tacgtatgca 2580 ggctttgctg ctggccaccg ccgcactgac tgcggaggtg ggtgccctga agcaggacct 2640 cgagcggacc gagcaagagc tcggccttgc aaaacggcag ctcgaggaga aagaaggtaa 2700 gagatacctt atagaaaaaa atgcctataa gaagacgcaa ttgcaaaaaa tgacaggagt 2760 acactgctta ttgtaggggc cacaactgag gtggcgaccc tcaagcaggc gttgtccgag 2820 gccgagaaga aggcggccac ggagcgcacc gagcgggaga aatttgaggc acaggtcggc 2880 gaggtgcagc aagagcttca ggctctcatg aaaaaacatg agagtttgga gcttgactcg 2940 aagacgcgag cgtccgagct tgctgcgtcc cttaaaactg ccaaatctgc caaggccgaa 3000 gcccagaagg ccctccaaga attggatgcg gtgaaaaaga tagcggcggg taaggcattc 3060 tccatgcaaa gcagacatat aaaagtaaac tacttgttac ttacccgaat ccggagctct 3120 ccaggggcat tcgcagatct tccccgcagc gtatacgatg ccgccgcatt ctactgagcc 3180 gagtctcagt acgctgaggc cggacatcct gtgcccttga gcgaccagct gaagtagccg 3240 gtcgagctcc acaaggcggc tgaacaggcc ctaaagggct tcatagttcg gctatggcct 3300 ggagaggccc tgcctgggag ctacttcgga ctggtgcggc ggctggtgga ggcttgtcca 3360 aggctcgagg tcatcaagcg ctccgtctgc atcaaggggt gcccgtaggg cccttgcccg 3420 tgcaaaggtg cactggggta agctggacgg tgagaagctt gtgagggacg ggccgccgcc 3480 ggggaaggag catcgcaagc ccgagaacta ttacaagaat gttctggctg gtgcccgcct 3540 tatggcggat gaatgtacca aggatgtaat ttttgaatga actcgctcgt gttatcctgt 3600 gcgctgaaaa cttgttcata tgcgctaagc aatgcttgaa tttaaaatat tactttctgt 3660 gtggccgttt atcaaaaaat tgagagatgg ccactcgtcg gcttctgccc ccatgccact 3720 agtgctgggg tgttcgggat aaacccgagc gctctttttc ccatgattgg gtccgtcgag 3780 ggaggcactc agcacaacga acaaggcaat cggagtataa tgcttgaaca ctctcactta 3840 gccatagaac tctataattt taaaatttca gcgaagcccc tagtattcgg aagaccgagt 3900 tcggggcgct atccacgcct tggccggaca aagccggttc ctcgctcgaa gcagcataag 3960 tctttaagga ctcgaaaaaa cctctcgaac agcgaccggt ctctcgcctc atcatgacag 4020 tcagttttag ctttctctac taaggtgctc agcccagctc aactggggca caatcgcagt 4080 agttctccta gtgctacctt agccgatata gcggaacgta aggcaccaaa acataggagc 4140 caggcaaacc caactattga cccaaatcat gattcggagc caatgcatat agtgctataa 4200 gttcggggtg ccgcacttgt gaaagtgtac ggacttctca cgccatattg atgggtacta 4260 aagcccctgg cgtatttttg ccgtgccaca gtgtatggat gcaacatgtt attaataaac 4320 atatatataa aaagaggaca atgcaaaaaa tagacaaaaa gctatgcatt gtttatagaa 4380 aggctgctat gaaagcggaa cgatacaaat agtgcgataa gcaaaagaaa ttggactatt 4440 tacatgtctt ggccaggggc aggccgcgga attgtattaa aaaataggta tactgctcgc 4500 aatagagacc acctgggagt tccataatgc ggcgtggctt gtctgctttc ctgggtcttg 4560 catcgtttgt gtggcagttg aattgccgaa cgggtcgtcc gaagtatgga gtcctgagag 4620 taaaagaaaa aaaaagaatc cggcagcccc tggtgcggtt taagccgtat ttcgggcgtg 4680 ccgtgatagt gccccttccc ctgtgcccat ggtatttcaa gagcgtagtt atgtatgtga 4740 agcactggtt tcgctatatc gcgagggcta gggttggggc cgcattgcta cgctagctca 4800 gaacatgcca ggcggtcttg ttgtggggta ctccgggcgc gcttgatagt gtccggcttt 4860 ttgaaggccg aactggagaa ctgcctagag aggctgcttt gtacttctgc tgcgagcgct 4920 gccgtgtgct cctccattcg gagggagcat tcagtgttcc cattgaccgt gattactcct 4980 ctagggcctg gcatcttgat cttgaggtat gcatagtgcg gtaccgcgtt gaattttgcg 5040 aatgcggttc gcccgagcag tgcgtgatag ccactacgga acgggactat gtcgaagatt 5100 aactcctcgc ttcggaagtt atccggagat ccgaagacca cttccaatgt aactgagcct 5160 gtatagttgg cttctacacc tggtatgaca cctttaaagg tcattttggt gggcttgatc 5220 ctcgagggat ctatgcctat tttttgcact gtatcctagt aaagcaggtt caggctgtgc 5280 cgctgtccat gaggactctt gtgagatgaa atccgtcaat gattgggtcg agaaccaatg 5340 cggcgaagcc accgtgacgg atgctagtgg ggtggtccct tcgatcaaag gtgatcgggc 5400 aggaggacca tgggttgaac tttggggcga ctggctccat cgcatatacg tcccgtaacg 5460 cacgcttctg ctccctcttg gggatgtggg ttgcgtatat catgttcacc gtccgcactt 5520 gcgggggaaa tcccttttgt ccattgttgt tcggcggcct gggctcctcc tcgtcgtcgc 5580 tatgcagccc cttgtctttg ttttcgactc ttaacttgcc tgcctgcttg aacacctgac 5640 aatccctgtt ggtgtgattg gctggctttt cggggttgcc atgtatctgg cacaagcggt 5700 cgagtattcg gtccaaactg gacgggccct gagtatttct tttgaatggc cttttccgtt 5760 gactgggttt gtagcctcgg aatctggcat taactgtcgt atcctcattg ctgtcgctgt 5820 taatgcgggg cttttgtttg ttccgacgcg acctgtcact tttgtccttg gtattcgaat 5880 taccagggtt cttggttaag ttgttgctgc gagctagcca gctgtcttct cccgcgcaaa 5940 agcgggtcat gagtgtcgtg agggttgcga tagatttcgg cttttcctgt cccaggtgcc 6000 gggcaagcca ctcatcacgg atattatgct tgaaggccgc taaggccttt gcgtccggac 6060 agtcgactat ctggtttttc tttgttagga accgtgtcca gaattgcctg gccgattcct 6120 ctggctgctg aattatgtgg cttaggtcat cggcgtccgg tggtcgcaca taagtgccct 6180 ggaagttgtc aaggaatgcg gcttccaggt cctcccaaga accgattgag tctactggca 6240 agctgttaag ccaatcccgg gccggtccct taagtttgag tgggaggtat ttgatggcgt 6300 gtagatcatc accgcgggcc atgtggatat gaaggagata atcctcgatc cataccgcag 6360 gatctgttgt gccatcatat gatttgatgt ttatgggttt gaaaccgtca gggattttat 6420 gatccattac ttcatctgtg aagcatagtg ggtgtgcggc gcctctgtat tgggctatat 6480 cacgacgcag cttgaaggag ctttgtctgt tgagttcggc ccggctggat tcattgcatc 6540 cggagtgacg gtcaccgtca cgtgccgtgg ggtgcctgcg cgatccatag atcgatcttg 6600 tttgccttgc cttgtcctcc agtatgtcgc gcaggtcggg cgcattttcc cgtgccttag 6660 tatgcttgac gcggtgccgg ggcatggctt gagtggaggg ccgagaggcc tctctgtcgc 6720 agccacgagg tggccgatcg gccatgtcat gcgctggtga tgtaggtgct tcctcctcta 6780 gtcggggtag cagcctgtgc tttgggtaac tcttggaggg gcgttcgagt tcatactctt 6840 cggccgcaag gacttcagtc catctatcag ctagcaaatc ctgatcagct ctaagctgtt 6900 gctgcttttt cttgaggctg cttgccgtgg ccataagcct gcgtttaaaa cgctcttgtt 6960 cggcgagatg ctctggcacg acgaactcgt cgtcgtcgag gcttgcctcg tcttcggagg 7020 gaggcatatg attatcgtcc tcaacctctt tgtccgccac cctctcgtga gggctggctt 7080 ctctgtcctc ctgtgctgac tcttgctgga gggggtgttc ttcggtgcta tccggagtag 7140 tattatctcc cgtgccggaa tcaccgtttt tcctttggcg ggatttagag cggcgccgct 7200 gacgccggcg cttgggctgt ttcttagagg tatcgtcccc cgctattcca tcgccgtctc 7260 catcctttgg agtgtccacc atatatatgt catatgacga ggtggccttc cagcgcccta 7320 catgtgctgg ttcttgttcg tctcctgcat cgtcgtccat accgtcgatg tcttcggagt 7380 cgaagtcaag catgtcggtt aagtcgtcga cagtggctac gaagtgggtg gtgggtgggt 7440 tttgaatttc ttcatcgtcc gtatcccaac cttgctgacc gtagtccggc tagggctctc 7500 ctgataaaga gagagacttt agagaattca ggatgtcgcc gaagggcgag tgctgaaaga 7560 tgtccacggc ggtgaactcc attatcggcg cccaatcgga ttcgatcggc aggggcgcgg 7620 ggggctcgga gttcggagag gaatccggct cctcggagtc acgggccatg cggagtgcgg 7680 ggttcgagtt cggctcgatc gcctctgaga tcgcagcccc tgaggcaacg tccaaccgct 7740 gatcctcgat cggcgcagta ggctccgaat caatggtcgg aaccggtgtg tgtgcggcct 7800 ccaaagcgct gttcggcggc agagctatat catgcccatc gagacagtgc ggcgcgcttg 7860 gctgtggctc gaatccgtcg aagatcaagt ccccgcggat gtcagccgta tagtttaggc 7920 ttccaaacct gacctgatgg ccaggggcgt agctttcgat ctgctcaagg tggccaagcg 7980 aattggcccg cagtgcgaag ccgccgaaga cgaagatctg tccggggaga aaagtctcac 8040 cctggactgc atcgttgttg atgatcgaag gagccatcgg gactaaaagc aacgacacag 8100 aggaactctc aatgaaagca ccaa 8124 // ID PIF12 repbase; DNA; GRAS; 2307 BP. XX AC U85626; XX DT 28-AUG-1998 (Rel. 3.07, Created) DT 28-AUG-1998 (Rel. 3.07, Last updated, Version 1) XX DE DNA transposon PIF-12. XX KW DNA transposon; Transposable Element; DNA transposon PIF-12; KW PIF12. XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-2307 RA Walker L.E., Eggleston B.W., Demopulos D., Kermicle L.J. RA and Dellaporta L.S.; RT "Insertions of a novel class of transposable elements with a RT strong target site preference at the r locus of maize."; RL Genetics0-0 (1997)In press. XX RN [2] RP 1-2307 RA Walker L.E., Eggleston B.W., Demopulos D., Kermicle L.J. RA and Dellaporta L.S.; RT "PIF12."; RL Direct Submission to Repbase Update (16-JAN-1997)Department of RL Biology, Yale University, New Haven, CT 06511, USA. XX DR GenBank; U85626; Positions 27 2333. XX SQ Sequence 2307 BP; 715 A; 491 C; 496 G; 605 T; 0 other; gggcccgttt gtttccttgg aaatgaaact cattccatga ataacattct agatattaga 60 ttcctaaaga aagtaattcc ttagaatttg attcaatcaa tttttttgtt tggatgccaa 120 tggaattctt ttccatgaat caaattcaat atcttgtttg gatagttata tatgaattta 180 catatttgga gggaagtaac cacatcaact tgcacacaac aaaatacaca agttttcacc 240 ctacaattta tcaagcagaa tcgatcacgg gaatagtaat aatgatgcat atttgtctca 300 aatgtccaca tatcattgga acacattact tgctactcaa atgtgatgtt caattcaccc 360 aacataaact aagacaacaa catcaacaca cccaacacca gttcaattca cccaaccaca 420 atcggttcac tttaagttgc ttcaacagcc atctcttcct cagaatcaat ggaagtgcca 480 ataaggactc gtacttgcgc gcatcacctg ttaagatatc aaacaagtct aaaaatgtgt 540 cttcatctaa cccatctatc tcctccaatg tgctaaaaat ttcttttgat gtcggccctt 600 ttggtgcttc atccctaata gcttcagtga acttgtctaa tttctccgcc atcattgagg 660 tgaaggaatc actggaacgt tgcctcttca agcttcctga ggttgttgat gaagtaagct 720 ctttaccggt tccctctcct tactcatatc tctcgcacca tcagctgggg tctttgccgc 780 ttcaccggtt gcatgatctt tcccaaacac caagttgatc agagtcccaa tataaaactg 840 tcttgtgtct gtacccatta gcttctttat ttttctgcag aaaacaattt gacaaaagag 900 ttaaaaacat tacttcagaa gcataattca gaaaacataa ttagacaaac atgctgttct 960 cagaaaatta cttcagaagc ataattcaga aagcataatt caaaagagtt aaaaacagta 1020 ctccataatt agacaaaaca gaaaacagaa aacattactt cattaaacag agagcattac 1080 ttctgaaaac attacttcag aagcataact tagaaaacat aattagatgc tggaagagaa 1140 catcctggtc tcggattaga tgcacaattt aatcaaacta tctagcgact gtataagtgt 1200 tcctcaatat ggaatcagtt cttgcctgtc cacctatcta gcgactgcta aacgatggtc 1260 tcggattatt atatcatcag tcggtggtca atatgtagcg tagtagcaga atcatctttc 1320 tcgtgtagag catattcgat tttttttccc gagcaaacct ctcccttctg attctggtga 1380 ccgacgagag ttcttttaca gctgaggctt ggcataaaac taaggtcgtc tactgattgt 1440 tgagtcttaa aatcatcata ccctgatact ctacatcgtt tttacagata aatttgacat 1500 gggcgatcag aacagaacaa aaagggggca tggtttttgc aacagagatg gagaaccaga 1560 accaggtgtg gtatattaga aacaaggaca cacagtcctg atcggaacca gctctgttca 1620 ttcacatgcc ccggtatcat ctgcaggcgg atcgagacgg gtacacgagg aggaatggag 1680 gtacatctca gagcccgccg agatggacga cgatacatac tagatacatt gtgaacctgt 1740 acgatgcaaa aaccttgtac gtagcagtgg aaatcaacct tgtacgtagc agtggaaatc 1800 agatggaaga gggaggactg gggggagacg agcgcggttg gcccagagag gcgaagagaa 1860 cggcgtgcgt gagagataaa gaagctggaa ctggaaggat ggatccgttg gttgccgagt 1920 tgcagagctg tcgtcttccc ccactcacgg tgaccttgag cgactgaagc ggaatatcag 1980 agaagaggag aaggggtggg gagcaagcga tattaccgca gcagatctcg gggaggagga 2040 ggcgacgacg cagcgctcgg ggaggaggag gcgacgacgc agtgctcggg gaggaggagg 2100 cgacaggccg gcgctcgggg aggagacgag cggtgcggcg gctgaagcgg aatctgtttc 2160 ctgatttagg ttaagaaagt ttcagagact tctaattcag gcctaagaat ggatggaaag 2220 ttagtttcca attctatagt ttgccaaaca aatcagccca agaattaaat tccaattcag 2280 cccaattcca atcaaacaaa cgggccc 2307 // ID RETROSOR1_I repbase; DNA; GRAS; 12063 BP. XX AC AF098806; XX DT 22-DEC-2000 (Rel. 5.11, Created) DT 22-DEC-2000 (Rel. 5.11, Last updated, Version 1) XX DE Internal portion of the RetroSor1 endogenous retrovirus. XX KW Endogenous Retrovirus; Transposable Element; internal portion; KW RETROSOR1_I; RETROSOR1_LTR. XX OS Sorghum bicolor OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Sorghum. XX RN [1] RP 1-12063 RA Llaca V., Lou A., Young S., Sato N. and Messing J.; RT "Retroelements in a gene-dense region in Sorghum bicolor."; RL Unpublished. XX RN [2] RP 1-12063 RA Llaca V., Lou A. and Messing J.; RT "RETROSOR1_I."; RL Direct Submission to Genbank (14-OCT-1998)Waksman Institute, RL Rutgers University, 190 Frelinghuysen Rd., Piscataway, NJ RL 08854-8020. XX DR GenBank; AF098806; Positions 711 12773. XX SQ Sequence 12063 BP; 3764 A; 3363 C; 2745 G; 2191 T; 0 other; acattggcgc ccaccgtggg gccggaacta taacctgcga tggctggaaa gagaacaagc 60 accacaagac ctcggggaga gccctccagg agaggaaggc caaggagggc cgtgcggagc 120 acgtacgcga ccgtggaggg agaaggttct gagggcgagc agccagagaa cgagcagccg 180 gaaacacgcc aggaacctcc tcccgccgca gacccggcgc agccctcggc cacgcaagag 240 ctccagcagc ttcaagcaca attgcggaac cttcagcaag agcgagaccg gatcgctgct 300 gcctacgccg ccagccaaga ggcagcggta accgcgacgc aggcggctga gatcaggcag 360 cagctttcac tcctgcaggc agaaatcctt agcatgcaac ccccagctca gccgacaatt 420 cagcccgctg ttctgaacag cgccggccca acattagatg tgcaaccgac gaactacggc 480 ggcatgttgc ggggcacgtt ggaccttcgt tcccctctgt ccgaaggatt gcagacctcg 540 ccttggccaa caacctacaa accaatcacg ctccctaaat tcagcggaaa ggccgatccg 600 cgccaattcc tgatgagttt cgaggcagcc gtggcctcag ctggagggaa cgagactgtg 660 atggcaaaat ccttcgtgat cgcagccgag ggagatgcct tagcgtggta ctcgatgctc 720 agacccgggt cgatctattc atgggagaac cttcgagaca agattttagc gaacttccag 780 ggattcgcgg ttgaatcact aacctccaca gacctgttcc agtgtcgcca gaatcaggga 840 gaggcactgc gggaatactt ccagaggttc gtgcagacta aggcgagagc acccggtgtg 900 ccgaaggagg ttgccatcga agcggccatc aagggccttc gcataggacc cttcgcggct 960 catttggcca gagaaaagcc agcatccatg cacgagctgt accacgagtt tgagaagtat 1020 tgcaggtcag acaacgacta ccgcaaaagg ttggaagacc aaaactctca gaagaggcag 1080 agcaatgata gaaattcaca gaagaaggac ctcagccggg atgaacgccg gccacagcga 1140 gaggctggtg gacagatgat gaatatcgag caaccgaaaa atgacaggcc ggaaaataac 1200 cgtccaccag tggaggcgcg gagctcggag cgcgtaccca atcaagccgg aagagggggt 1260 cgaaatgcgg gatggcgaaa aaatcaaagt cagcgaccac ggaaacagta ttgtttcttc 1320 catggagaag agaagggtca ctccaccaga gattgcccag atgcaaaaga aactcaagag 1380 aggatcaaga gcaggtcggc tccgcaacct ccgataccag ttgctcagcc tcgggaagta 1440 aaccacacat tccctcaaac cttctaccat tcatatgtcg gaggttcaag ccagcagcac 1500 ccagctccac ttcaacccag cgcgctagcc tccgcttact atcccagctt cctaccagct 1560 tggcgcccag cccagcaaac cgcggaccac aaccttccac caaactatgt tcctccacga 1620 cctccacaca tcacgtacat cgagactcag tcactacctc ctcccccaaa ccagctacag 1680 ctactccaag ccccaccacc accaaagacc gaaccccacc ctgataatca aatcggcccc 1740 catacacccc tgcccacgat tggaatgatc ttaccaatag ccggggggtc ctcaatggag 1800 ttccagacaa agaaacaaaa gaaggatcac ctcaggctcg tcaacaacgt tgcagttcaa 1860 gggccagtaa gatgcactga ttggtccaga accccaataa ccttcaccga ggaagaccta 1920 agattggaaa gctaccctca cacagacgcc ttggtcataa caacaaatgt tgcgggttgg 1980 ggagtaagca ggatcttagt ggattcaggg agttccgcag acataatatt tgctggaacc 2040 ttcgaccaaa tgaagctcag cagaagccaa ctccaacctt cggaatcacc tttgatcggg 2100 ttcggaggaa aacagataca tgctttggga aaggtcgcat tacccgtatc cttcggcaca 2160 acagagaacg caagaacaga gtacgtcacc ttcgatgtgg tagacttgca ctacccatat 2220 aatgccatat tcgggcgagg attcttaaac aagttcaatg cggccgctca catgggatac 2280 ctgtgcatga aaatcccggc tctgcacgga gtgataacgg ttcacggaag tcaaaaggag 2340 gcaaggaaca tagagaaagc aatctacaag tccttccgga acataaactc cgtagactct 2400 acgcaacatg aagcctccca gccaccagac atgccaaggg ggaaaacaaa cctggccgat 2460 caggaggaaa cgaagtgtat ccctctgcag gaagctgttc cagataagaa ggtcaccatc 2520 tccgccaccc ttagtagaga ggaggagctc gaattgctag acgtattgca aaagaaccaa 2580 gatatcttcg cttggagcgc cgctgaccta caaggagtca gcagagatat aatagagcat 2640 tcgctggaca ttgatccgag aatgaggccg aaaaagcaga gacagagaaa aatgtccgaa 2700 gaaagaacct tagccgcaaa ggcagaggta caaagactcc tggacgcaaa ggtcattaga 2760 gaagtcatat acccggaatg gttggcaaac gtggtcttgg tccccaagaa aaatggcaaa 2820 atgagaatgt gcatagattt tacggatctc aacaaggctt gtgtcaaaga ctccttcccc 2880 ttgccaagga tagatacctc tgtggacaaa gcagctggtt gtcagagatt ctcactgctg 2940 gactgtttct ctggatacca ccaaatttgg ctcaaaaaag aagacgaagg aaaggcaagc 3000 ttcactaccc cattcggcac atattgctat acaagaatgc cagaaggtct caaaaacgct 3060 ggagcaacct tctccagaat gatggggaag gttctaggaa gtcagttaca gagaaacatt 3120 atagcctacg tcgacgatgt tgtcgtcatg agcaagcgca aggaagatca tatcaaggac 3180 ctgcaggaaa ccttcgtcaa ccttagatct gccgggctga aacttaaccc ggagaagtgt 3240 gtgttcgggg tcagcaaggg aaaaatgctg gggtatatca tcagctccga aggaatcaga 3300 gctaacccag acaagacaaa agcaatcatg tcaatggcag aaccttcaaa taagaaagag 3360 gtgcaaagac tgacaggccg aatagcagcc ctcaacagat tcatttcaag atcggcagaa 3420 cggagcctcc cattcttcaa ggtgctgaga gaaggtaaaa cagaatgggg tccagagcaa 3480 tcagaggcct tcaggcagct caagaattat attgcgacca acctgctggt aacagtgccc 3540 gaaccagaca ctccactact attgtatgta gctgcctccg agcacgctgt cagtggtgtt 3600 ctagtgcacg agacaagcga cactaaagga acggtgcaaa gacccgttta ctacgtatcc 3660 gaagctttgt cgggagcaaa gctgaactac acggagatag aaaaaatcgc atacgcggtt 3720 ctgtgtgcat caaggaaact caagcactac ttccaaagcc atgagattaa agtgcccact 3780 tcacagccat tgggagatat ccttaggaac aaagaggctt ccggacgtat aggaaagtgg 3840 gcagccgaac tatcacagtt tgatatcacc tatgtcccca gaacctccat caaatctcaa 3900 gccctggctg acttcatggc agactggaca ccttcgaaca aaaacgagga gaaggtaatc 3960 gatcagccgt ggacgctgta tacagacggc gcctggggtc aagcgggagc aggagcggca 4020 gccgttctaa tcgcaccatc tggactcaaa ctaaagtttg ctatacgact cgaattcaaa 4080 gcaacaaaca acatagctga gtatgaaggt ctcatcctcg ggctgaacaa agctaaggct 4140 tcgggagcaa agacattagt catcaaaaca gactcccagg tggtggcagg gcaagtggag 4200 aaggaatacc tagcacacaa cccggagtta gcaaggtatc tggccgtcgt aagaggcctg 4260 gagagaaggt ttaagggatt cactctgcag tacattccaa gagccgaaaa ctacgaggca 4320 gatgagctag cgaaagcagc agccaacaac acccccttgc cagaaggaac cttccaccag 4380 attgttacaa cacccgcaac cgaaacgttg ccaaaagcct ttcgctcagt cctgctgaca 4440 gaaagcgaag attggaggca ggcaatagct gattgcctca aaggcaagac aactgtagac 4500 gacgaagcaa cagccaagag gatggaggca agagcaagga attacacctc cattgacggg 4560 atcctgtaca agaaaggcgt agtccaacct ttgctgaagt gcatatcaca aagcgagggc 4620 agagaactcc tacgagagat acactccggg atgtgcgggt ctcacattgg acctcgcgcg 4680 ttgtctgcta aagcattaag acaaggattc tactggccaa ctcacattag agatgctgaa 4740 gaaatagtga agacgtgcaa agcctgccaa accttctcac caattcagtc aggaccttca 4800 gcactaactc agctcatacc agcatcatgg ccgttgcaga gatggggaat ggacctggta 4860 ggaccaatgc caactgccca ggggggaaac aaattcgccg tcgtggccat cgaatacttc 4920 acaagatgga tcgaagctaa accactgaca accataacct ctgaaacaat caggaaattt 4980 ttctggcaga acatagtctg cagattcgga gttccacgct tgctcacagt tgacaacggg 5040 aagcagtttg attcagacaa tttcaaagaa ttctgccatc tcataggaac caaaattgct 5100 ttcgcgtctg tttatcaccc agaatcaaac ggggccgtgg agagagcaaa cagaacaata 5160 ttctccgcaa tctccaagac cttactcaac ctacgcaagg ggaaatgggt tgaagaacta 5220 ccaagagttg tatggtcaca taacacaaca gtttcaagag caactgggtt cactccattc 5280 aagctcttgt acggggaaga ggcaatgttg cccgaagaaa tcaaacacca aagcctgcgt 5340 tccatgaagc agcagttggc tgaagatgaa gagtactgca aggaaacctt agaatcaata 5400 agacttgagg cagtggagaa tattaccagg tatcaacaag aaaccaagaa ttggagagac 5460 cgcaaggtag tacgaaaaga catacaaaat ggggacctgg tgctcaggaa aaaaggagat 5520 cacccaaacg ctggtaaatt gcaacccaag tgggaaggac cttatacagc aatacaagcg 5580 ggaaggtcgg gatccttcta cctgaaagac ctcgaaggaa gaacctccac ccacacgtgg 5640 aacgtcgaca atctacgtag attttacatt taagtgtaag gatgacccct gcaaaataag 5700 cggcggcatc cacatcccta aatatgcttg ttttcttttt ctctaccttt tcgcattcca 5760 aggtctgcac tcttttcctc acaggggtac tcctaccagg aggtgaggtt tttaacgagg 5820 cagaacctat gtaaaaacct ctgaaatata aagaggaatc caccccagaa ccaaggccca 5880 aaagtcgaaa aacagccagc aacgaggctg tagcattcga caaaacatca cgttatcaca 5940 aggaccctcc gtagctttca tccaaaggct aagaaagctc ggaacgtcct caaaggtgaa 6000 aaaacaccaa atccttagca aaagacctag ccaagagccg ggcagcaagg atagcatggc 6060 caaaaagtga aaaagtcctg tccttctcag gcatcacaac acgaccggaa ggagcaaaac 6120 cttcaaacct gacaaagacc tgaggagaat caggcatcag gaactatatt gtttttgcca 6180 aaaggcatcg tacgtttaac attcacaata cagacctcaa caaaattcac ataaccttca 6240 ccaaaataag gtcgaaggta tcttgctact ctaagcagac cccaacaaac aaagtgtgaa 6300 tacaataacc ctcagtcagg cacagcaaaa ccaactacca caacaaccgt caataacccg 6360 tcaataagtt ttaacctaac taagtacata aaataaatgc acgacaacct ataaaacccg 6420 actaagcctg ccccccaccc tcaaccagga tcagtataca aagacccgat catcgagtgc 6480 aaacctagca gtcaaaaagc aaaaatccta ggccaccatg gaggcaggag ttagcctcac 6540 aacagcaaca aaactttgta tcgcacgaag cttcgtaata ttagaactac ggcgttgtga 6600 tgaacatcga ccacaaagtc gtgtacagcc acaacagaaa caatggaagt cagactcaga 6660 ggtctctgaa gggtatcgca cgaagtctcg taacatccct tcagaacctc cgacttaaat 6720 agccgaaggt tctcctcgac aacactccac gggagtcgag caaaggaaaa aaatagcaca 6780 attcatcgaa ggatccttcg catcaaaaag ctcgaaggct ccaagcccaa gaagcaacga 6840 tcctccgcgc aagaaaaaat caagaactcc ttcgcaacaa caaacatcaa gaacaagcaa 6900 gccacagcaa cacaaatatc cttaggatca acaccaccgt aacgttgcaa tatataagtg 6960 ctgtagcgcg aaggttgcaa caagaatgag atcgaaggtt gtagcaaact ttactatcga 7020 tgaagaaatc attacaaaag ttcaatgaat aaaatcatcc ttctacccat aaaaagtcga 7080 aggttatggg tagcttgtac aagttcaaat ttccaacaat ccctcaacta aacaaccgaa 7140 ggatccatga ctcacgtaca aactatagcg cgaaggctgt caaagttaaa cggttcgaat 7200 ccatgtggta aaaatatttg atctttatta acggtacaca atgtacataa cacaagctta 7260 caacaaaaaa aaaaatgaaa tgaaaaacat cctccgaccg taaaactccg aaggttctaa 7320 gaccctcgca caattctaac atacgaatct ggaaaaagcc taagatcatc acagtaatcc 7380 tgcacaagga aatcaactaa gtcatctata ctacgcgtag gatacttgtg gcgccaccag 7440 tcaattagat aacccctcgc gtacaaatct ccacgcttga acgtcaccgg ggtaacgtaa 7500 cttccttcaa caaagttcga aggaagatct tccaacggag gggaattcac aacctgcgcg 7560 aagtaaataa cttcaaatcc aacaaaaacg aaggataaaa ctaaaaagcc aaacgaagct 7620 ctcgaacctc cggaaaacct tgaagaaaag gctctgcaac atcctcagaa gcctccgcca 7680 cccagcgtac cctatccctt tcaccaaaga tgcgaaggat aggatatggc aactacataa 7740 acacatcaaa tcatgtcata aaaaatataa ccaaaaccta cgataaacga aaagaaaaac 7800 aaaaacatcc acctaagccg gaggccatga acctcggcga gcaagcgact ggataaatcc 7860 agatccttcg ccatcaatat catacccaac aaactcgaac atatccacca atctcatgtt 7920 agggaaggca actcgccaat actcccacaa ttcgccagaa acataaattc ctttgtaaaa 7980 atacgaaagg ggagtaatga aacgatcctg cgcaggtcct ccgccagaga cctgcgcagg 8040 atcaaaatgt aaaacaaagg cttatctgaa aacaactcaa tatattatat tttcaacagt 8100 ctttacaaat taaagcacaa cctccggcct tacttacaaa aaagcgtcac acatgcttgg 8160 acgcaaaaaa gactaagaaa aacctaaaaa ctaaaaagcc tcacacctga ggcggaggag 8220 gagcaggagc ctcggccgtc tctgaaacct tggcaccaga tccctccgga gctttggcac 8280 cagcatcacg agcctccgct tcaggctggg tcggaggaca cgcctcactc ggtggacgcg 8340 aaggaccggc cttgacaacc ttagctttct tcttcgcaac ctcctaccaa acacccatct 8400 taagttacat cgcaaagtaa cgaagcaaat gcaaaaagaa ataaccgaat agaacaaacc 8460 tcagctcgac gatcctccgc cattttcttc gcctcatccc gcccaaacct aatccagaac 8520 gaactgataa agttccggac agatttgcgc agggaagggg tcccttcgcc aacgtcctcc 8580 gccgcggcaa attcctcctt ggcgactccc tccgcgtgag agcaacctcc gcggcgtaaa 8640 agcctagcga aggagctaac cgcggccaaa gccccaaaat caacagcacc cccgacaaag 8700 tcggggagca tgcggatatg ggacttcagc catgcgaggg aagccccaac atcgccgccg 8760 ggcggaggag cagaggtgct acccccaaac ttcgcaagcg agtcggcata gagtccgaca 8820 atagctgcag cctccgcttc cgccttctgt atgcgagtct gcagctcagc tgcagacgtc 8880 cgctcagcgt caagctcttt gcgaaggcgt tcagcaatgt cctccgcctt ctcggctcgc 8940 tgcagggcta cgtctctaac tctccccgcc tcagcaacac ttgtgcggag gaccgccaac 9000 gaagcttcgg catcctcctt ctccttcctc agagcctccg acccagcctt gtagtcatcc 9060 ctctcctttt ttagggagtc aacctccctc ctgacggagg aaaactcctt aacctcctcc 9120 gacaaacgag ccttctcagc ttccaaggtc tcgttctcct ttttcagagc accgatcgcc 9180 tcatcacggc agatgacttc ccgggagcaa cgctcctcca aggcggcagc catgtgatga 9240 ccctactcaa aaataattac ttacaacaaa cctccgagtg aaaaaccgcg aaggaagata 9300 caacaaagcg caaacataca aggctatggt gctcatattg cacgcgaagg agcgtgtcaa 9360 agtccatgcc ccgaagcttc tgacgaaaac gatctgtaaa ccaaaaacaa ttaagaaaaa 9420 ccatcgtaag aaacaaaaaa ccattggcgg aggccagaac actaacctcc gaccaaggaa 9480 tgaacctcgc gcaaggcatc agtccaacct gtgatcgaag gttcagaagc gcctgcacat 9540 aacaaaaaca aaccttagaa taaaatgcca aaagcaaacc aaaccgttga aaccaaaaaa 9600 gaggaaactc accgggacca agaacatcag caggcgaagg cctgttggcc aacgcagaag 9660 gcgcaggctc acgcggcgga ggaacggcaa gcccctcctg cgcaacgctg gcgcctttag 9720 ccaactcctc cgcggtggcc agcccagcaa aaacatccgc tgaaagatga accaaaaaca 9780 tgagaccagg tcaatcaaaa cttgcagaaa aactaataat cagcaaaaaa tcattaccca 9840 tgtataacga gttaataccg tcaccagccg aacgaagggg agcctccgcc ctcctgatcc 9900 tccgaacgga ggcggactca gcttcgtcgc tggactccac ctgaacctcc ttaggcggag 9960 accctccgcc agctgaagca acgcgcggac cctcaggcgc tgcaggaatt gcctcccgca 10020 cagggctcgc ctcaggggcc tccgcgtcgg aagattcttc cccaagaaga gacgcgaaag 10080 gcgcgcgcac ggaggagacc gcacgcgaag cttcagcctc aggagctcca ccggcagcag 10140 ctgcctccgc aggcgcagaa gccaccgagt tcgactcggc accagatgag cgagcggagg 10200 aagactccac aggagcctct agcacaacct ccgccctccg cttcttcgca agttgcttaa 10260 ctgcgccacc ccccttcctc ttcttcgact ccgccaaggc aacagccttc gaggagtcct 10320 tcttcttttc caacccaagc aaaacatccg gaggaataac ataatcctca tactggatcc 10380 ccaattcctc aaaaacgcgg ttgaaccggg gcatcgtccc aagcgcagac cttcgctgaa 10440 gaaactcctt ctccgtgatc ttcccgacga tccttcgggc agaaacctcc acccgatcaa 10500 gaaaggactc cttggtctca tcctccggaa tacccgcacc aaaccgggga aacggcaacc 10560 cctccggagg accaaaaaca ggaacttgca ccatctcaat ggtgaactca tctgtcctgc 10620 ggccaagtgg ccaatagtca gcagcgacca tctcctcaac caaatcccga cctccggaat 10680 atcggcatgc cagcgcaaat gccttatcac aagcaattcg ctcctccgac atctcctgcg 10740 aaggatcaac cttcgagaaa ggtttcaact ccttcatcag cgacgcgtaa ggataaacct 10800 tatcaacact gccatcatcc aaagtcttcg acgcggcagg ggtcctcacg tagaaccaag 10860 ctctcatcca atccttctcc cacttcccct tctggcagta ggagatctcg caccttggcc 10920 caggcatcgt gcggcgcggc atgaacgcgc agcttccaaa ctgcgcaatg cactcaacac 10980 cttcggcatc cttcaccttt ttaggctggc gctggagctc aaagtatgag cagaaagtgt 11040 cgatgtgggg catagctccg taggattcgc atgcccaggc aaatttgcta agggtcagta 11100 tcccattagg gctgaaatgc tgcagctcca cgttgaaact ctccatcact tcgcgaagga 11160 aatgatacgg aggcatccga agtccgcaag taaagaagtc cctgaatacc accgcatacc 11220 cctcttcagg cgcgggcaca gtctgatccg caggaggagc ctccgcgcga ccttccttga 11280 aaaatcttgc ctcaaccatg tcagcgatat cctccgccct cacagtcgac tgcccgaact 11340 caaaagtaat cgccgccatc ccctcaaact ccttcgcact gatcagatca ccgacagaag 11400 cttcgacgtc agacaacgtc tcctccagat cttgagctgc agccacctca agcatccact 11460 cctcaaacct acgcaaccaa cctcctgacc tcacgctaag gaaactgcgc aaaggaccag 11520 aaaaatctga cctcgaagga cgcggtgaag gaagctgagc caccgtgaaa cctccgacaa 11580 cactttagaa ctaaacgcac gcgagcagct cagagagaaa gacgtagcga aggaaggtgt 11640 gcaggcaatg agcagcaggg gtgagagctc aaagctcccc agcacctcct tttatagggg 11700 gggggcctgc gaccgcgcgg ccgttgcgat tccccgcgcc caacggctat aagcggagga 11760 atcggccaga ccggtgcgct tcatcaatgc caacggctaa ttccaacggc aacaaaatcc 11820 tccgcaatcc tccgcaatct aacgcgcgta ggatacttag cagcaataat cggaggatcc 11880 cggcaaaata aagaaacaag aaaaattgcg actaagtaaa agaaacagtt atccaacatt 11940 tgctaacaaa cacatcctgc gcaccagggg ggaaggcagc aaccatgctc gtgacctccg 12000 cagcgtagca tgtttttgag cacatggacc gcaggagtgc cattagccca aaaagggggg 12060 aac 12063 // ID TSB1 repbase; DNA; GRAS; 890 BP. XX AC . XX DT 02-MAY-2002 (Rel. 4.2, Created) DT 02-MAY-2002 (Rel. 4.2, Last updated, Version 1) XX DE Sorghum bicolor non-autonomous DNA transposon - a consensus. XX KW DNA transposon; CANDYSTRIPE1; TSB1. XX OS Sorghum bicolor OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC PACCAD clade; Panicoideae; Andropogoneae; Sorghum. XX RN [1] RP 1-890 RA Chopra S., Brendel V., Zhang J., Axtell D.J. and Peterson T.; RT "Molecular characterization of a mutable pigmentation phenotype RT and isolation of the first active transposable element from RT Sorghum bicolor."; RL Proc. Natl. Acad. Sci. U.S.A 96(26), 15330-15335 (1999). XX RN [2] RP 1-890 RA Jurka J. and Drazkiewicz A.; RT "TSB1: a non-autonomous DNA transposon from Sorghum bicolor."; RL Repbase Reports 2(4), 29-29 (2002). XX DR [2] (Consensus) XX CC Similar in part to CANDYSTRIPE1 [1]. XX SQ Sequence 890 BP; 280 A; 132 C; 135 G; 266 T; 77 other; taaggccttg tttagttcac ccaaaaaatn atnnaaaant tttcaagatt ttccgtcaca 60 tcgaatctta cggcacatgc atgaagcatt aaatatagat aaaaataaaa actaattgca 120 cagtttacct gtaaatcgcg agacgaatct tttaagccta gttagtccat gattggacaa 180 tatttgtcaa ataaaaacga aagtgctaca gtgtcgaaat cgcaaaaaat tttcggaact 240 aaacaaggcc taagtaaaac atnttgtcnt agcncttnct tnatccatca caanggtgtc 300 ntgttttngt gacaattana nntnnnnact tnnatatcat aaactcanan anaacagatc 360 atgctccaan atngaaaaaa tcaaanccaa tatctacgca gtgtnctaag nngnaantaa 420 tagatctnam ctattgaaan taaacctnnt tagtanattt nnttctaaaa aanatttagc 480 agggacntan ganganntct cttaatnggc nanctaaang cancttgcat tgannaaagt 540 gttngttnta nattnttktt gaacnatnga aagtacnatg atgatnacct tttgtttntg 600 ggacnaangs tacnnggngc cngtgttgcg ncangcntta ggccttgttt agttgcanry 660 gaaaattttt tggatttcga tactgtagca ctttcgtttg tatttgacaa atattgtcca 720 atcatagact aactaggctc aaaagattcg tctcgcnaat tacaggtaaa ctgtgtaatt 780 agtttttatt tttatctata tttaatgctt catgcatgtg ccgcaagatt cgatgtgacg 840 gagaatcttg aaaatttttt aaattttggt gtgaactaaa caaggcctta 890 //