ID CRM-I_OS repbase; DNA; ORY; 5933 BP. XX AC . XX DT 16-MAY-2005 (Rel. 10.05, Created) DT 28-FEB-2005 (Rel. 10.05, Last updated, Version 1) XX DE Rice centromeric LTR retrotranposon, internal sequence consensus. XX KW LTR Retrotransposon; Transposable Element; internal sequence; KW integrase domain; reverse transcriptase; pol domain; CRM-I_OS. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-5933 RA Gentles A. and Jurka J.; RT "Rice centromeric LTR retrotransposon."; RL Direct Submission to Repbase Update (16-MAY-2005). XX DR [1] (Consensus) XX CC There are about 15 nearly complete copies in the rice genome, CC that are more than 97% similar to the consensus, indicating CC relatively recent activity of this retrotransposon. Generates CC 5 bp TSDs. It is 83% similar to the maize (Zea mays) CC centromeric retrotransposon CRM_INT. The 908 bp LTRs are CC deposited as CRM-LTR_OS. XX FH Key Location/Qualifiers FT CDS 1256..5839 FT /product="CRM_1p" FT /translation="MAGPEDKDEEGASHSPRTKGIIQYFTRQVKQHTEGLD FT TDLQVTNEKIGQLESTQISTNTKLTGLETAVARIDTSLAALVRHFDALNAG FT GNGGGNDDDIDGEYVEDNLEDEYIADTEQDDRDARDRRRLHNNRRGMGGRR FT RREVRNNDDAFSKIKFKIPPFDGKYDPDAYLSWEIAVDQKFACHEFPENTR FT VRAATSEFTDFASVWWIEHGKKNPNNMPQTWDALKRVMRARFVPSYYARDL FT LNRLQQLRQGAKSVEEYYQELQMGLLRCNLEETEDAAMARFLGGLNREIYD FT IVDYKDYTNMTRLFHLACKAEREVQGRRASAKANFSAGKTSSWQTRTTPPA FT GRTASPSSTPTTSRAAPPPSSDKSATKAAQPAPSASSMASTGRMRDVQCHR FT CKGFGHVQRDCPSKRVLVVKNDGEYSSASDFDDDTLALLAADHADNEPPEE FT HIGAAFADHYESLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKERCCRMIID FT GGSCNNLASSEMVEKLALSTKPHPHPYYIQWLNNSGKAKVTKLVHINFAIG FT NYHDVVECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIVLH FT PMSPEDILRDDVAKAAKSKCESDKKAQSDGKKPETINLKPKCLLATKSDIN FT ELIASPSVAYALVCKDALISLHDMQHSLPPAVANILQEYSDVFPKEVPPGL FT PPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESL FT SPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSI FT VFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMR FT LMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNL FT EKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLA FT GFYRRFVQDFSTIAAPLNALTKKGVPFTWGTSQENAFHMLKDKLTHAPLLQ FT LPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPVLNYSTYDKEL FT YALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESF FT PYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDV FT LLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFG FT AKKTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPT FT VPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKTDDASHIAD FT LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTD FT GQTEVVNRTLSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKMCPFQI FT VYGLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHETTKENIERMNAKYK FT FAGDKGRRELNFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAKINE FT NAYKIDLPADFG" XX SQ Sequence 5933 BP; 1588 A; 1198 C; 1391 G; 1756 T; 0 other; ggtggtatca gagcgtggtt catcggtgag agaatttacc cttcccttcg tcattaattt 60 ttttttccta tagtccagaa aagaccaaca aaaaaaatag tagattagtt ttcccgtgat 120 cctatagacc attgtgcctt tttactagta ctgcttagtt aaggcttgtt gagttttcga 180 ttgcatcggt tgtgttaatt tgctggtctt agtgttaggc gattagagtt tcgagttctt 240 gccaccaccg cacatcgcca ccttcatcaa ttttgccgtc atcaccaccg tcaccaccgt 300 cgcagtcacc caccaaatca ctttctattt gtgtttgatc tgttgccgat agcttttgtg 360 agttgccttg tatcctgccg ccactagaaa ggaaatagaa ccctgattcg agtgaccttc 420 cttaaaacag tcatatcttt ttcatacgga ctcgaaatta ggcttataat atatccacgg 480 acatctacaa aaaaagttac atccgattct ccccgctttg ccgggttcgg caaatttaaa 540 atcgccaaat tcctcttgca aaattctgtt tttgtggcga gaagcttcgg gacctattcg 600 catagaactt taaaaaaatt ctacaagctt catactttgt ccgtttgaga taagattttc 660 tgtggttggt tctagtgtgc tcctggttgt gaaaaaaata tcaaaaaaaa aaaaaaaaag 720 ttgtgcctct ctcctcagca ctagagagag caagcaaaaa aaaaaaaaaa aagaggatcc 780 agcgagcaca ccccaccatt ccccctttgt caccaccttc caccaccggt tcttgttttc 840 gttgctgttt gggtttgtgt tttgtggcgt cctttgtggt taggctcgcg tctctacttc 900 gactagccta ggaccagcac tgtacactat acccttgagc gattattcaa tttgctttgg 960 ctaacgtggt ttctagtttt ctcttgagca ttgctttcag cccaccaaca gctccaccac 1020 aaacccgact acagcttgac aggtcttgtt gctacagcac cgatacacct cgttccacgg 1080 ttgctaactt gtgggttgct gtccccctcc tgtgggcaag gtaagaactg gtaagagctt 1140 gtgagacaag ctgcgagtga agtgagagtg agcgtcttgc aaaagctaca tcccaatagt 1200 tgtgtagggc ttacattaca tcctccattg ttttgttgtc cttcatttct aaaccatggc 1260 aggtccagag gataaagatg aggagggtgc atctcattcc ccacgcacca aaggcatcat 1320 ccaatacttt acaaggcaag tgaagcagca cacagaagga cttgatacag atttgcaggt 1380 gacaaatgag aagattggac aattggagtc cacgcagatc tccaccaaca ctaagcttac 1440 agggctggag acagcggtcg cccgcattga cactagcctt gctgctcttg tgaggcattt 1500 tgatgctctc aatgctggag gcaatggtgg gggtaatgac gatgacattg acggagagta 1560 cgtcgaggat aatttggagg atgaatatat tgctgacact gaacaagatg atcgagatgc 1620 tcgagatcgt cgacggctac acaacaatcg acgaggtatg ggtggtcgcc gccgacgcga 1680 ggtacgcaac aatgatgatg ctttttctaa aattaaattt aagattcctc cttttgatgg 1740 aaaatatgat cctgatgcgt acctctcttg ggagattgct gttgaccaaa aatttgcatg 1800 ccatgagttt cctgagaaca ctagagttag agctgctacg agtgagttca ccgattttgc 1860 ttcggtttgg tggatagaac atggcaagaa aaatcctaat aacatgccac aaacttggga 1920 tgctttgaaa cgggtcatgc gggctagatt tgttccttct tactatgcac gtgacttgct 1980 gaataggttg caacaattga gacagggtgc gaaaagtgta gaggaatatt atcaggagtt 2040 acaaatgggc ttgcttcgtt gtaatttaga ggaaactgag gacgctgcca tggctagatt 2100 tttgggtggg ttaaaccgcg agatttatga catcgtagac tataaagatt acactaatat 2160 gacccgattg tttcatcttg cttgtaaggc tgaaagggaa gtgcagggac gacgtgctag 2220 tgccaaggct aatttttctg caggtaaaac ttcatcatgg cagacacgca ccactcctcc 2280 ggccggccgt actgcttctc catcttccac acccacaacc agtcgagcag cacctcctcc 2340 atctagtgac aagtcagcga caaaggctgc tcagccagca ccgagtgctt cttcaatggc 2400 atccacaggc cgaatgagag atgttcagtg ccaccgttgc aagggctttg ggcatgtgca 2460 gcgtgactgc cctagcaagc gagttttggt agtcaaaaac gatggtgagt actcctctgc 2520 tagtgatttc gatgatgata cacttgcttt gcttgcggct gaccatgcag ataatgagcc 2580 accggaagag cacattgggg ctgcatttgc ggatcactat gagagcctca ttgtgcagcg 2640 tgtccttagc gcacaaatgg agaaggcgga gcaaaatcag cgacacacgt tgttccaaac 2700 aaagtgtgtc gtcaaagagc gttgttgccg catgatcatt gatggaggta gctgcaacaa 2760 cttggctagc agcgagatgg tggagaagct tgcacttagc accaaaccgc acccacatcc 2820 atactacatc caatggctga acaacagtgg taaggcgaag gtaacaaaac tggtgcacat 2880 taattttgca attggaaatt accatgatgt tgttgaatgt gatgttgtgc ccatgcaagc 2940 atgtaatatt ctgctaggta gaccatggca atttgatagg gattctatgc atcatggtag 3000 gtccaaccag tactcttttc tgtaccatga taagaaaatt gtgttgcatc ccatgtctcc 3060 tgaagatatt ttgcgtgatg atgttgctaa ggctgccaaa tccaaatgtg agagtgataa 3120 aaaagcccaa tctgatggca agaaacctga gacaatcaat ttgaaaccca aatgcttact 3180 tgctactaaa tctgatatta atgagttgat tgcatcacct tcagttgcct atgctttggt 3240 atgcaaagat gctttgattt cacttcacga tatgcagcat tctttgcccc ctgctgttgc 3300 taacattttg caggagtact ctgatgtgtt tcccaaggaa gtgccaccgg ggctgccacc 3360 ggtgcgcggc attgagcatc aaatcgactt gatcccaggt gcttccctac cgaaccgtgc 3420 gccataccga accaaccctg aggaaaccaa ggagattcag cgtcaagttc atgagttgct 3480 tgataaaggg tatgtacgcg agtctcttag tccatgtgcg gttccggtaa ttttggtacc 3540 aaagaaagat ggttcatggc gtatgtgtgt tgattgtaga gctattaata acattaccat 3600 tcgatatcgt catcctattc ctaggttaga tgatatgctt gatgaattga gtggctctat 3660 tgtgttctcc aaagttgatt tgcgtagtgg ttaccaccag attcgtatga agttgggtga 3720 tgaatggaaa acagcattta aaacgaagtt tgggttgtat gagtggttag tgatgccttt 3780 tggtttaact aatgcaccca gcactttcat gaggttgatg aatgaggttt tgcgtccttt 3840 cattggaaaa tttgtggtgg tctactttga tgatatcttg atttacagca agtctatggg 3900 tgaacatttt aatcatttac gtgctgtttt taatgctctt cgtgatgcac gtttatttgg 3960 taaccttgag aagtgcacct tttgcacaga tcgagtttct tttcttggct atgttgtaac 4020 tccgcagggg attgaggttg atcaagccaa ggttgaggca attcagagtt ggccgactcc 4080 taaaacggtc tcacaagtgc ggagctttct aggactcgcg gggttctatc gccgctttgt 4140 gcaggatttc agcaccattg ctgcaccatt gaatgcgctt acaaagaagg gagtgccttt 4200 cacttggggc acatcacaag agaacgcctt ccacatgttg aaagataagt tgacccatgc 4260 acctctcctc caacttcccg attttaataa gacttttgaa cttgaatgtg atgctagtgg 4320 gattggattg ggtggtgttt tgctacaaga aggaaaacct gttgcatatt ttagtgaaaa 4380 gttgagtggg cctgttctga attattctac ttatgataag gaattgtatg ctcttgtgcg 4440 aactttagaa acatggcagc attatttgtg gcccaaggaa tttgtcatac attctgatca 4500 tgagtctttg aagcatattc gtagtcaagg gaagctgaac cgtagacatg ctaaatgggt 4560 tgaatttatt gaatcttttc cttatgttat caaacacaag aaagggaagg agaacatcat 4620 tgctgatgct ttgtctagga gatacacttt gttgacacaa cttgactaca agatttttgg 4680 cctggaaaca atcaaagacc aatatgcgca tgatgctgat tttaatgatg tgttgctgca 4740 ttgtaaggat ggaagaacat ggaacaaatt cgtcatcaat gatgggtttg ttttcagagc 4800 taacaagcta tgcattccag ctagctccgt tcgcttgttg ttgttgcagg aagcgcatgg 4860 aggcggtttg atgggacatt ttggtgccaa gaagacacat gacatccttg ctagtcattt 4920 cttttggcca cagatgcgaa gagatgttgg caggttcgtt gctcgctgcg ctacatgtca 4980 aaaggctaag tcacgcttac atccacatgg tttgtatatg cctcttcctg ttcctactgt 5040 tccttgggaa gatatttcaa tggattttgt gttaggattg cctaggacca agagggggcg 5100 tgatagcatt tttgtggttg tggatagatt ttctaaaatg gcacatttca taccatgtca 5160 taaaactgat gatgcttctc atatcgctga tttgttcttt cgagaaattg ttcgcttgca 5220 tggtgtgcca aacacaattg tttctgatcg tgacacaaaa tttcttagcc atttttggag 5280 aactttgtgg gctaaattgg ggactaaact tttgttttct actacttgtc atccccaaac 5340 tgatggacaa actgaagtgg tgaatagaac cttgtctact atgcttaggg ctgttttgaa 5400 gaaaaatatc aagatgtggg aagaatgctt gcctcatatt gaatttgctt ataatcgttc 5460 cttgcattct actacaaaaa tgtgcccatt tcagattgtg tatggtttgt tgcctcgtgc 5520 tccaattgat ttgatgcctt taccatcttc tgaaaaactg aattttgatg ctaagcaacg 5580 tgctgagttg atgttaaaac tgcatgagac aactaaagaa aacatagagc gcatgaatgc 5640 taagtataag tttgctggtg acaaaggtag aagggaattg aattttgaac ctggagattt 5700 ggtttggttg catttgcgaa aagaacgatt tcctgatttg agaaagtcta aattgatgcc 5760 tagagctgat ggaccattta aagtgttagc aaagattaat gagaatgcat ataagattga 5820 tttgcctgca gatttcgggg ttagtcccac atttaacgtt gcagatttga agccgtattt 5880 gggagaagaa gatgagcttg agtcgaggac gactcaaatg caagaagggg agg 5933 // ID RIRE3_I repbase; DNA; ORY; 5775 BP. XX AC AB014738; XX DT 02-JUN-2000 (Rel. 4, Created) DT 02-JUN-2000 (Rel. 4, Last updated, Version 1) XX DE Gypsy-type LTR retrotransposon RIRE3 DNA, internal region, DE complete sequence. XX KW LTR retrotransposon; GYPSY superfamily; retrovirus; polyprotein; KW RIRE3; RIRE3_I. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-5775 RA Ohtsubo E.; RT "Direct Submission."; RL Direct Submission to EMBL/GenBank/DDBJ (22-MAY-1998). Eiichi RL Ohtsubo, The University of Tokyo, Institute of Molecular and RL Cellular Biosciences; Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-0032, RL Japan (E-mail:eohtsubo@ims.u-tokyo.ac.jp, Tel:+81-3-5684-3269, RL Fax:+81-3-5684-3269). XX DR GenBank; AB014738; Positions 1 5775. XX SQ Sequence 5775 BP; 1402 A; 1522 C; 1524 G; 1327 T; 0 other; gttggtatca gagccccctt gaccctagga cgagctgtag atccgaagcc ttagcagtat 60 tttcgaaata aaaatccttt gttatttgtg aaaaccctct agtctctctc tgtcttgctg 120 cttcatttat cgtcaaaatc tgacctttaa aatgttgttt ttcttttttg tttttgtttg 180 tagatggccg gcagcgtcac ccgtcgtggt ttggacatga ctggcttcgt cttggagctg 240 cggggcatgt gcgttgtcct ggggtatcca catggagtgg actaccaggc caggccgctt 300 ccggagcagg agggtgacga tgcagagccc cacgctgctt gggaggtcac tgcagtgatc 360 ctctctggct ctcccgagcg gacttcgctg gcagtcaccg cgggtgggga ttccttcccc 420 gccgcttgcc agagcgccgc tctcctcgcc atcggcaccc ttcactagcg ctacccggac 480 gagttgcagc actcgcccta ccgctaccac catcgccgcg gaggagcccg cgactacgcc 540 accttccggg atgctagctc ggaagatgac gttaccatcg tgcacctggc gcgcatggtg 600 gaggcgtatg acgcggctcg tatcgacttc catcaaatgg tgcgccgtgg gatggttgaa 660 aacaacttga aaatcctgga gctgcgtcag gagaacctgc agctcaagaa ggacttaaac 720 gcggtggagg cgcagctgca tcagctcaag atcgcccagg gagaggacag ccgtcccaag 780 cgtcgccgcg tcttccgcag ccagaagatc accgcccgca agagcacctc caggcccgag 840 cttgttcgtc agtccctggc gtggacctgc ttcgtcgaga cccctcgtgc cgagcccgcg 900 cccgtggttc cccaggaggg ggaagcatcc ggcgttggta gcacggagga tgcgctgttg 960 ctcaccttcc gtcctggccc gtcgcagcag tagacgagca gttagtaggc tcgcgcgtgt 1020 gttctttctc gtttatcttc ttgttgagtc gtgtggggca tggttatgcc ggtgtgtggt 1080 ataactgtgt cggagcctgt cttattttat ttgcctaagc aacttgaact ctaatgaacc 1140 aatttaatag cagtaataaa ttcaagaatt atggtagtcg tgggtggtta gttttaatag 1200 ttagctcttt ctgtttgctg gatccgtgtg gggtttacag atggtgacaa ccaggagaac 1260 tgctaatacc ggtgatggca accaacccga aggcagcaac atcaacaacc atggcagccc 1320 acctccacct ccgcctcctc caccaccccc agacaccaac gccattctca ctcaaatcct 1380 cgcccagcaa gccaacatga tggctgcttt cctccaccac atccaaaatc caccacggca 1440 taatgctcca cctccaccac cacccccgca acactctgag ctcgccgagt tccttcgcat 1500 tcgcccgcct accttctcca gctccaataa ccccgtggat gccttggatt ggttgcatgc 1560 agtggggaag aagttagaca ctgtgcagtg caacgataag gagaaagtca tctttgccac 1620 ccaccagctg caggggcccg catctctatg gtgggactac ttccaggcta cgcagcccga 1680 ggggcagcct atcacctggg cccgtttcac cgccgctttc cggagaaccc atgtgcccgc 1740 cggagtcgtg gctcttaaga agagggagtt ccgagagttg aagcaaggca accgctccgt 1800 gatggagtat ttgcacgagt tcaacaatct ggcccggtac gctccggagg atgtgcggga 1860 agatgaggag aagcaagaga agttcttggc gggaatggac cctgagctgt ccgttggtct 1920 agtctctggg gactatccgg atttccaacg tctggtggac aagagcatcc gcttggaagc 1980 caagcacaag gagctggagt cgcacaagcg ccgcttggcg aacttccgca atcagcaggg 2040 tgctaaccag agggtccgct acaccaatcc ctatccaggg ggatcctcct cgcagcagca 2100 acaacaacag cagcagcaat cccgccctgc gcctcgacct caattcgtgg tgcgcgtccc 2160 acagccgcag cagcagcaga atcagcaagg gactcgtgcg ccccgtcctc ctacgccagc 2220 tgtgcagccc gttcaaggcc gcagggacgc ttcaggtccg cagcgtctgt gcttcaactg 2280 cttcgagccc gggcactttg cggataaatg cccgaagccg aggcggcagc aaggccaagc 2340 gcctccccgc cccaacaacg gcgggaagga tgtcattcgg ggccgtgtga atcacgtgac 2400 ggccgaggac gtgctgacaa ctccagactt catcgttggt acgttcctcg ttcattccat 2460 ccctgctacc attttgttcg actctggagc ttcccactcg ttcatatcta tgccattcgt 2520 ggggaaaaac cagttggggg tagaaaggct tagaaaccct ctgctcatca ccacccctgg 2580 aggggttatg acagcaaagt attatagtcc tgccgtccct atagaaatcc aggggattcc 2640 ttttccctcg gatctgattc tgctagacac caagaacttg gatgtgatcc ttgggatgaa 2700 ttggttggct caattccaag gagtagtgga ttgcgcgaga cgcactgtca ctctgtaccg 2760 agggccggaa caaccggttg ttttctttgc acccccaacc tctgtcagaa gttcagaact 2820 gcattagata ggactgtcag aaatccccat tgtcagagag ttcggagacg tgtttccgga 2880 agaactacct ggtatgccgc cccagcgaga gattgagttc cggatagatc ttgctccagg 2940 aaccactcct ctgtacaagc gaccctaccg tatggcagca aatgaactgg ccgaagtcaa 3000 gaaacagttg gaagagttga aagaaaaggg gtatatacgt ccgagtactt ccccatgggg 3060 tgctcctgtg atttttgtag agaagaaaga caagacgaag aggatgtgcg ttgactacag 3120 agctctcaat gaagtcacta tcaaaaacaa gtaccctctt ccccggatcg atgatctgtt 3180 cgatcagctt aaaggtgcca ctgtattctc caagattgat cttcgttccg gatatcacca 3240 gttgcgcatc cgggaagaag atattccgaa gaccgcattc accacgcgat acgggctgta 3300 tgaattcacg gtgatgtcgt tcggtctaac caatgctcct gcatttttca tgaacttgat 3360 gaacaaagtg ttcatggaat acttggataa gttcgttgtg gttttcatcg atgacattct 3420 gatatactca caatcagagg aagaccatca gcaccatctc cgtctggtgt tgggaaagtt 3480 gcgggaacat caattgtatg ccaaacttag caagtgtgag ttctggttgt ccgaagtcaa 3540 attcttaggg cacgtgatat ctgctaaagg agttgcggtg gaccccgaaa cagtgaccgc 3600 cgtcactgat tggaagcaac ccaagacagt cactcaagtc cgcagtttct taggtttggc 3660 aggatactac cgaagttgta tcgagaactt ctccaaaatc gctcgaccca tgacacagtt 3720 gttgaagaaa gaagagaaat ttgtgtggag cccgcaatgc gagaaggcgt tcaaaaccct 3780 caaagaaaag ctggtttcct cgccagtgtt aatcttgccg gatactcgca aggatttcat 3840 ggtgtattgt gacgcttcgc gccaaggatt ggggtgcgtg ctcatgcagg atggtcatgt 3900 ggtggcctat gcctcacgcc agctacggcc tcatgaaggc aactacccta cccatgattt 3960 ggagttagct gcggtggttc atgctcttaa gatcaagcgg cactatctca ttgggaatcg 4020 ctgtgaaata tatattaatc ataagttttt gaaatacatc ttcactcagt cggatctgaa 4080 tcttcggcag agaagatggt tagaactcat caaggattat aatgtgggaa tccactatca 4140 tcctggtaag gccaacgtgg ttgccgacgc tctaagtcga aagagccact gcaacactct 4200 caacgtccga ggcattccac ccgagcttaa tcaacagatg gaagccctga acctaagcat 4260 agttggtcac ggattcttgg ctgcgttgga agccaagccc accttgctcg atcaaatccg 4320 cgaggctcag aagaatgatc cggacatgca tggactcatc aagaatatga aacagggtaa 4380 agctgctggt ttcacagagg atgaacacgg aaccttatgg aacggaaagc gagtatgcgt 4440 tcccgataac agagaactta aacaactgat acttcaggaa gctcacgaaa gtccttattc 4500 cattcacccg ggcagtacca agatgtactt agacttgaag gagaaatact ggtgggtcag 4560 catgaagcgg gaaattgcag agttcgtggc tctttgtgat gtgtgccagc gtgtcaaggc 4620 agagcaccaa cgaccggccg gacttctcca acctctccaa gtgccggaat ggaaatggga 4680 tgaaattggg atggatttca tcaccggcct tccaaaaacc caaggtggat atgattctat 4740 atgggtagtc gtggatcgat taaccaaggt ggctcgattt attccggtga agaccaccta 4800 tggagggaac aaactagcgg aactctactt cgctaggatc gtgagtctcc atggcgttcc 4860 caagaaaatc gtatctgata aggggagcca attcacctct cacttttgga agaagctcca 4920 agaagagctt ggtactcggt tgaatttcag caccggttac cacccgcaga cagatggaca 4980 gaccgagcgt ctaaatcaaa tcctagaaga tatcgttcgc gcatgtgtcc tagatttcgg 5040 gaagacctgg gataagagtc tcccctatgc cgagttctcc tacaataaca gttatcaagc 5100 cagcatacaa atggcacctt atgaagcgtt gtacgggcgc aaatgtcgga caccgctatt 5160 gtgggatcaa gtcggagaaa gccaagtgtt cgggactgac atcctgagag aagctgaagc 5220 taaagtcaga atcattcggg ataatctaaa ggtggcacag tctcggcaga aaggctatgc 5280 agacaaccgt cgccgtgact tggaattcgc agtggatgat tttgtgtatc tccgggtaac 5340 accattgcga ggggtacacc ggtttcagac gaaaggaaac tcgcacctcg gtatgtgggt 5400 cctttccgta tcgttgctcg acgcggagaa gtcgcttacc aattggagct gcccgcctcc 5460 ttgggcaacg tgcatgatgt gttccatgtg tcgcaactca agaaatgcct tcgagtgcca 5520 tccgagcagg ccgactcaga gcaaattgaa gttcgcgaag atttgaccta cgtggagagg 5580 ccagtgaaaa tcctggacac catggagcgc aggaccagga accggataat ccgtttttgc 5640 aaggtccagt ggagcaacca cgccgaagaa gaagctactt gggagcgcga agacgagctg 5700 aagacagccc atcccgatct cttcgccagt tcttccgaat ctcggggtcg agattccgtt 5760 taaggggggt aggtt 5775 // ID TWIFBIG repbase; DNA; ORY; 3567 BP. XX AC . XX DT 13-SEP-2002 (Rel. 1, Created) DT 13-SEP-2002 (Rel. 1, Last updated, Version 1) XX DE Rice putative hAT-like DNA transposon TWIFBIG. XX KW HAT superfamily; DNA transposon; target site duplication; KW TWIFBIG. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-3567 RA Jiang N. and Wessler R.S.; RT "TWIFBIG: a putative hAT-like DNA transposon from Oryza sativa."; RL Repbase Reports 2(8), 59-59 (2002). XX DR [1] (Consensus) XX CC 9bp target site duplications. XX SQ Sequence 3567 BP; 1036 A; 840 C; 765 G; 926 T; 0 other; ataggtgtcc aaacgggcgg cgcggcccgg cccggcacgg gcacggttcc ggcacggccc 60 gtttcggcac ggcccgttag gcacggctga tgaaacgggc cgtgccgtgc cggcccacgt 120 gccgagccgc cggcccaagc acggcccgtg gatggccggg ccgtgcccgt gccggcacgg 180 cacacctgcg gcccacgggc cgttcggggc acggcggccc gtgaaggcag gccgccagcc 240 cgccagcctg cagtgcacag tgtttttttt taaaaaaaag caaaggaaat gtataaggaa 300 aaaaaattaa aaatggaaat aaaatgttta aaaaaaagta atgatttact aatgttaaaa 360 aatgaaaaaa tggtatttaa aaaatggaaa taaaagtttt ttaaaaaagt aatgatttgc 420 taatgttaaa aaaaagaaaa aatggtattt tttttgttgt gttgaaaaat ttaaaaatat 480 agattgtgat tcattatttt gaaataattt aaagataaat ccacacttgc gaaaatattg 540 caaaagaatt tgttaaaaat agtaatgacc tttattgatg tttatatcat tacaggatac 600 aatgatacat gctgcctcgt taaaaacttt gtcatgtaaa aactcatagg ggaaaatgag 660 aaaaccatga caaagaaaag agtacagctc aaaggtcaga actacttcta acaaaattct 720 actggggttg gtctggatcc aggtagagtt gctcgaactg agcagccaat tcttggttgt 780 ccgcagtgta ttgggcatgt tgtcgagcaa gctcccagtc tttaacgctt agtagcattt 840 cgacgtggtc gctgcgcaga gtcgtcctcc ggtcttcgat gattcggccg catagactga 900 aggccgattc ggaggacacc gtcgacacgg gcaccgtcga cacatcccgt gctagttttg 960 aaagcacagg atatgttatc ttgtggtcat tccaccaccc gaggacgttg aaatcttgtg 1020 cttcgtggtg gatggcgtcg ctgtccaaat aaccggacaa ctcttcggcc acaacatgcg 1080 aagaggcgtc tccacttgta gccgacgaac tgccaccacc ttggattgaa cttgaagacg 1140 atccacccca aatcctaccc cactgtatct tcttcttacc tatagtgggg ataggagggg 1200 gtctctgctg gcgaacttcc tgaaacttta cttcatatct tccaaaaacc tcatataatt 1260 tacgtctaac ctcagtataa aaagaactat aatctacacc tatagtatct ccaacaagtg 1320 ataaaatagc agacaatccc cttaatttac acctaggatc taaaacaaaa gcaagagcat 1380 acaacatagg tatatttttc caatatttca aatatttttg tttcatgtga aagacaggtt 1440 cagttagaac gtcatcattt tcgtattctt taaataaagt agcaatttca agaaggttgt 1500 gcaaaattat attagcagtt ggataataaa cttgtgacaa agttagagta caatcataaa 1560 aagtttctag aaattggtaa aatttttgga caattgccca aacatgctcg ttcagtactg 1620 aagacccgtc actgtttctt gggccaccac gtgactgaac aaaatcagaa agtaaactac 1680 tataaggtaa aacaactttt aacattaaat acgttgcatt ccaccgatgc tctgcatcgg 1740 tggcaaactt acgagctttc acaccggccg cattgcaaaa acctcttcca tgcagcaatc 1800 cgcgggttag aagcagttaa ccacgcgatt gcttgacgaa cagcatcgat gtggtcacct 1860 accctcttca tgccagtctt aacaatcaaa ttaattatat gacatgcaca acgctgatgg 1920 agtagaaaag attgagcata cacacaaaat aaaggttgca atatttcaat agccctagaa 1980 ttagcagatg cattatctag ggtgacagca aatattttat cagcaagatt aaattcatta 2040 attacttccc taattctttc agctatgttt tctcctgtat gtgagacatc tattaaccta 2100 agccctaaaa ctctcttttg taattgccaa tcatcatcaa caaaatgaac aactacgcta 2160 agataatcct ctctagctct actactccat atatctgaag taacactaac agagaaagta 2220 catgtactaa acagttcctt aagtgcagtt gcttccttgt gataaacatt ctctaaatct 2280 ctagttgatg tttgcctact cacagcttta aacctagggt tatgagattg ctgaatgtaa 2340 tgttcaaaag caggggactc cccaaagttc aggggtaaat cttgcctggc gattaaccgg 2400 acaagagatt cccgagcaac catgggatcg tactcccaac tgcgtaccgt accgtctggg 2460 tttaccataa gttgctgctg ccggagttgt attccttgct tcttggcaca cgactccgca 2520 tggcgcttga ggtgacctgt accaccagaa gaacgagcag ataaaatttg cctacatatt 2580 ctacaacggg ctttcgatac ctcccttccg tcggggcatg tttcctttat ctcgtcgaag 2640 ctttgccaca caccggaggt tctcgatctc ttcgagccgg tgtgtgtcga aacacttccg 2700 ctcgcggttc cggaaaatcc ttccgaagct gtctccgcct gaaccggtac ctcctcaacg 2760 acagccgtat gaaccggtac ctcctccaca gatggtggag ttggagccga tccggaggta 2820 ccgtcaaacc ccgacatgta gttggggtcg aaatcaccca aggtgaacga cggcgactgg 2880 tatggaaagt tcggatccat tctgaaaatt taaaccgaca taaacaaatt ttcgaatatt 2940 tattgaattc acaaacacaa tacaaataat acacaaattt gaatattact tacatctttc 3000 caaccgcgag ctcttcaaac ctctgcgatc aaactgttga actacgaaac taattttgat 3060 ttttgacaaa atttgagcaa attttgtcaa aatcaaaaaa aatgcacact tgagaacaaa 3120 gagagcactt aaaacacttg agagcacaag atgaggagtg tgggatgagg agaaatggct 3180 ggggttcatg ccctatttat agggcgaaat ttgagatttt ttggaatttt ttcgaaattt 3240 ttatgaattt tttagcctcc caacggttat tttcaaattt gaacggtcaa atagccgtta 3300 gtgccacgtg gcgccttccc attcgaccgc cgcccgccct gtccgcgcct gacgggccgc 3360 cggcgtgccg tgccgtgccg gcccgctaca gtagccgtgc cgtgccgtgc cggcccgcgg 3420 gctcggccag cggcccaagc acggcacggc tactcgtgcc gtgccggcac ggcccgttac 3480 tgtagcaggc cgtgccgggc cgtgcctgct acaggttcgg ccgtgccccg ggccgcccgt 3540 ttggcccggc ccatttggcc acctcta 3567 // ID SZ-26 repbase; DNA; ORY; 5594 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 11-OCT-2005 (Rel. 7.07, Last updated, Version 1) XX DE Rice retrotransposon SZ-26. XX KW Gypsy; LTR Retrotransposon; Transposable Element; SZ-26. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-5594 RA Jiang N. and Wessler R.S.; RT "SZ-26: a retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 83-83 (2002). XX DR [1] (Consensus) XX CC SZ-26 has 387bp LTRs. XX SQ Sequence 5594 BP; 1571 A; 1169 C; 1379 G; 1475 T; 0 other; tgtcaagatc ttgcctgatg gagaacagga gaacaatgca gtagaactgg agatagcagc 60 agagcaggag atagaagaga cttcaagcgc tacagcaaag aagcccattc gagctcgtgt 120 tcctaaccct cgctatagtg ggccaatgtg ggccaagtaa catctttctt gtaatagggg 180 aaagaattcg ccagctgtaa tactgtttgg ctgtaagaga gagagagaga gagagagaag 240 ggatacggta taaaacactc aatgtatccg tgactcgaat catcgatgaa ttgaattggt 300 ggcggcttgg cggcggcggc gctcgatccg gttgggtcga gtcgacgata acctatctgt 360 tcttgtgatc tgtgagagga attgacaaaa cttggtatca gagcctacta tcccacccaa 420 ttcttgatcc ggcagcaaaa gggttccgat tggggattgg agatcggctc ttgcagctga 480 aatccgcgaa aaggtaactt gcccctctcg gtttgctgga ttaggaacag gggaagtgga 540 tcccgttgcg tcaaactaga aaagccaagg tatcaaacca agcaagcgtt caaaatcatg 600 gagaacgagg ccaagctgga tctgatcctg aagaagctga ccgagacgga ctccaagttg 660 gtggatctgg agaagaactc ccgcgcggat atgctgaacc tcaagacatc agtggattcg 720 tggaagccac agctcgagaa gaaggtgact gatctggcga ccaccgttgg aaatctgcag 780 cttcagttcg atcagcttca actcctgaac aaggcggagc cgaagcctga ccttaccgcc 840 caattgggcg cccgcaatgc tgctgaaata cgggcggagg tgcttgggtc tcatccccaa 900 tcaccacccc cggccaatgg tacgaactca atcttgttct ccacacctgc tccttatttc 960 catgatccag ccatgcgaac tgcttttact ggtagtgctg tgggcacaag cactggttta 1020 cctcctatgc catgtccaca atttgatgga gataaccccc aaatgtggag agaaaactgt 1080 gaagcctact ttgatactta tggagtcagc cctgctcatt gggttaggat agccaccctc 1140 aatttttctg ggaatgcctc attttggttg cagtcagtta ggtcccaatt aataggagtc 1200 acttgggtag aactttgtga gaaagtttgt gctaagtttt ctagggatag gcatcaacag 1260 ctgataaggc aatacataca cattagacag actggtagtg taactgaata tgtggataag 1320 tttgatagct tgatgcacca attgattgct tacgatagtg aactgaagcc tgtgtacttc 1380 gtcactaagt tcgtagaggg tttaaaggat gctattcaca ctgtaattat ggtgcaacgc 1440 ccccaagatc tggatactgc ttgctctttg gctttattac aggaggaggc aatgctggga 1500 actcgaaggt tggagttctc tactccagtg aagtccaatt tcaggaacac tgctcaagtt 1560 tctttgacac ctctaccagt gagacctgtt gtgaatgagg ataagaaaac ccctgaagca 1620 gctaagatta ctcccagaga tgatagattg tcctcactta aggcttacag aaaatctaag 1680 gggctgtgtt tcacttgtgg tgaaaggtgg ggaagggacc acaaatgtgc ctcaacagta 1740 cagttacatg tcatggaaga gcttttagaa gctttgcaag aagatgatga cccagttggt 1800 gatgatattg tggctgaagc tgagggcact cttatggcag tttcaagtca ggcaatagct 1860 ggagtggaat cttcaaagtc tattagggtg agaggttggg ttcagggctt ggaactctta 1920 atgcttgttg atagtggaag tactcactcc ttcattgatg agcaagtggc tagaaagctg 1980 gcaggaattc agaccttatc acatccagtg cagattaaga ttgctgacgg tggaaccatg 2040 cagtgtgata gaagcatacc taactgcaac tggtggatac aaggttgctc tttcagaact 2100 gaattcagag ttctacaatt gggagggtac gatgctatcc tggggatgga ctggcttgaa 2160 cagttcagcc ctatgaaggt ggattgggtg cagaaatggc tcgaatttcc tctggcaaga 2220 aggttgatca gaattgaggg tatctagcct caaactgacc actaccctca gattacttct 2280 ctgcagatca aagggcttat gaagactgag tcagtaatgc atgtactaca gattcagaag 2340 actgaccaga catctgatgt agtgattcct gattcaatca agcatgtatt ggacaggttt 2400 caggaagtgt tccaagaacc cacagaaatg ccacccgtaa ggaattgtga tcacaagatt 2460 cccttgatgg aaggagcaag tccagtcaac ctcagaccct ataggcatac cccagcactc 2520 aaggatgaaa ttgagcgtca agtaactgaa atgcttcagt ctggagtcat acaaaacagc 2580 aatagtgctt tttcatcacc agcactgcta gtcaaaaaga aagatggcac ctggagactt 2640 tgcatagact ataagcacct gaatgcaatt acaattaagg gaaaataccc tttgcctgtc 2700 attgatgagc ttctggatga gctttctgga gctaagtatt tctctaaact cgatttaagg 2760 gcaggttatc accagataag gctgcaacct ggagaggagc acaagacagc cttccagact 2820 cactcaggcc actatgagta tcgagtgatg tcctttgggt tgactggagc accagctact 2880 tttcagaagg caatgaatga taccctagcg acagtgctaa gaaaatttac attggttttc 2940 tttgatgaca ttctaatcta tagccctgat ctaccatcgc atattcagca tttagaacaa 3000 gttttgcaac tacttcaagc tcaacaatgg aaagtcaagt tgagtaaatg ttcctttgca 3060 caacaacaac tggcttacct aggccatatc attggcaagg atggagtaac cactgatcct 3120 tctaagattg ctgatgtgct gcattggaaa attcctcagt cagtcaagca gttgaggggc 3180 ttcctaggtt tggcaggata ttacaggaag tttgtgagaa actttggaac tatcaacaaa 3240 ccactcaccc agctgcttaa gaaaggggtg ccctttaaat ggacagcaca aatggatgaa 3300 gctttcaatg ccttgaagca agctttggtt agtgccccag ttttggcact gcctgacttc 3360 tcaaaaactt tcactgtgga aacagatgcc tgtgatatgg gaataggggc agttttgtca 3420 caggacaggc accctattgc ctttgttagc aaagcattag gtccaaaaac cagggggctg 3480 tctacatatg agaaggaata cctggctatc ctattggcag tcgatcagtg gagatcatat 3540 ttgcagcatg atgagtttgt catactcaca gatcaccaca atctaatgca tatcactgac 3600 caaagattac atactccgtt gcaacataag gctttcacta agttgatggg actgcagtat 3660 aaggtttgtt atcgaagggg aacctctaat gcagctgcag atgcattatc aagaagggat 3720 gaagagacaa atgatcaatt gtgggctgta tccgaatgcc aacccctttg gttaacagca 3780 gtggtaaaag ggtatgaaac tgatgagcag gctcagcaac tcttaactga attggcattg 3840 catcctactg ccagggaaca ttttcattta gtgcaagggg tattgcggta caagggtaaa 3900 atttggattg ggcataattt atccttacag caacagctag tcactgcctt gcatgccagc 3960 cctataggtg gacattctgg tttcccagta acttatcagc gagtaaaagc actgtttgct 4020 tggccacaga tgaagaaaat gattcagcag tgggtaaaga attgtactat ctgtcagcaa 4080 gcgaaaccag acctagctaa atatccagga ctgctgcaac ccttgccgat tccagaaggt 4140 gcctggcaag tggtctcatt ggattttatt gagggattgc caaaatcaga gagatacaat 4200 tgcatactag tggtggttga caaattctcc aggtatgccc actttgttcc tctgtcacac 4260 ccattctcag ccctagatgt tgcagtgtca tatatgaaga acatctacaa acttcatggg 4320 atgcctaaag tactgatctc tgatagagac aaaattttta ctagcaaatt gtgggaattt 4380 cttttcttga aatctggcat tgccctgcac cttagttctg cttatcaccc acagtccgat 4440 gggcaaacta agagggttaa ccagtgtttg gaaatgtttc tccgttgttt cactaatgca 4500 gcccctttta agtgggttac ttggttacat ttagcagggt attggtataa tacttgcttt 4560 cattctgctt tgaacaagac accattcgaa gtactctatg gccataaccc tcttcagttg 4620 ggtgttacta tggaaacttg tgcgattccc gatctggctg tttggcttca tgagaggaaa 4680 ctgatggcag aattgctgca acagcatttg caccgagtac aacaaaagat gaagtttcat 4740 gctgataaga acaggtcatt cagagaattt gcagtagggg actgggtatt tcttaagctg 4800 caaccatacg ttcagaagtc tgttgcatct cgagcttgtc ataagctggc tttcaagttc 4860 tatggcccct ttcagatatt ggcaagggtc ggtactgttg cttataagct tcaattgcca 4920 gatgacagta ctatccatcc agttttccat gtttcccagc tcaaggttgc acatggattt 4980 aagcatcaag ttcaatctcg gctgcccaaa ttcctgaaat caactgtcta tcctcttcag 5040 attctggacc agcgattgat caggaaaggt aatcgcactg tttctcaagt tcttgtatat 5100 tggtctgatt ctgttgcaga ggatgccacc tgggaggatc gggaagatct tcagcagcgt 5160 tttccaatgg cactggcttg ggggcaagcc acttttcaag gggagggggt tgtcaagatc 5220 tttcctgatg gagaacagga gaacaataca gcagaactgg agatagcagc agagcaggag 5280 atagaagaga cttcaatcgc tacagcaaag aagcccattc gagctcgtgt tcctaaccct 5340 cgctatagtg ggccaatgtg ggccaagtaa catctttctt gtaataggga aagaattcgc 5400 cagctgtaat actgttggct gtaagagaga gagagagaga gaagggatac ggtataaaac 5460 actcaatgta tccgtgactc gaatcatcga tgaattgaat tggtggcggc ttggcggcgg 5520 cggcggcgct cgatccggtt gggtcgagtc gacgataacc tatctgttct tgtgatctgt 5580 gagaggagtt gaca 5594 // ID LINE-5 repbase; DNA; ORY; 431 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE Rice long interspersed nuclear element LINE-5. XX KW LINE; long interspersed nuclear element; LINE-5. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-431 RA Turcotte K., Srinivasan S. and Bureau T.; RT "Survey of transposable elements from rice genomic sequences."; RL Plant J 25(2), 169-179 (2001). XX DR [1] (Consensus) XX SQ Sequence 431 BP; 133 A; 119 C; 117 G; 62 T; 0 other; aacgctactc caatcagcgg gagggggcaa agccacgcta cactcccaac aaatccccaa 60 aggaagcaac acccgctaac gaccacagct ggccttccga aagaatggac tctaaaacca 120 ctgagaacga agagagcaga gtcaaaaacc ctagagttcc gttccttcca cagttgccaa 180 gagactagaa ggatcaggga gtcgaagccg gcacggaggc gttcaagtaa acagacccta 240 gaagatggcc accagttctg gagccagttg ccatgggggg agagggcagc ctagccagga 300 ggggacaaca cctgtaacca gacctgccga gcgaacacgc agtcgagaag gatgtggttc 360 gtcgtctcaa gctcctgagc acaaaaagga taagtcaagt ggccatcgat gccacgcttc 420 tggactagat c 431 // ID NDNA1TNA_OS repbase; DNA; ORY; 334 BP. XX AC . XX DT 10-JUL-2002 (Rel. 7.06, Created) DT 10-JUL-2002 (Rel. 7.06, Last updated, Version 1) XX DE Nonautonomous DNA transposon NDNA1TNA_OS. XX KW DNA transposon; Transposable Element; NDNA1TNA_OS; KW nonautonomous DNA transposon; TNA target site duplication; KW imperfect palindrome. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-334 RA Kapitonov V.V. and Jurka J.; RT "NDNA1TNA_OS."; RL Direct Submission to Repbase Update (16-AUG-2000). XX DR [1] (Consensus) XX CC It is a nonautonomous DNA transposon, an imperfect palindrome. CC It is flanked by 3-bp duplications of the TNA target site. CC There is one young subfamily of this element, its copies CC are 1% divergent from the consensus sequence. The second, CC older subfamily includes copies that are ~5% divergent from CC their conensus sequence, which is 96% identical to the CC NDNA1TNA_OS consensus sequence. XX SQ Sequence 334 BP; 116 A; 53 C; 50 G; 115 T; 0 other; ggccctgttt agatgggact aaaactttta agtccctatc acatcggatg tttgaaaatt 60 aattataaat attaaacgta gactattaat aaaacccatc cataatcttg gactaatttg 120 cgagacgaat ctaatgagcc taattaatcc atgattagcc tatgtgatgc tacagtaaac 180 attctctaat tatagattaa ttaggcttaa aaaatttgtc tcgtgaatta gcttttattt 240 atgtaattag ttttgtaagt agtctatatt taatactcta aattagtgtc taaagacagg 300 gactaaagtt aagtccctgg atctaaacac cacc 334 // ID SZ-5LTR repbase; DNA; ORY; 1223 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE Rice copia-type long terminal repeat SZ-5LTR. XX KW Long terminal repeat; retrotransposon; COPIA superfamily; KW SZ-5LTR. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-1223 RA Jiang N. and Wessler R.S.; RT "SZ-5LTR: a copia-type LTR from Oryza sativa."; RL Repbase Reports 2(7), 114-114 (2002). XX DR [1] (Consensus) XX SQ Sequence 1223 BP; 376 A; 359 C; 222 G; 266 T; 0 other; tgtaggatcg aatcacaaga actaagccaa ccagaggggg gtgaatggtt ggtataccca 60 aaaaccgaaa acttttagcg gaaataaaag ttaccctcga aatcgatgga tcgcggtctg 120 accgaagtag ttgcgccggt ctgaccgcct gatgaatgtc ggtctgaccg atgtagatcg 180 atcggtcgaa ccgccgaaaa cgcctgcagc cgactcctgt tgccgccggt ctgaccgccg 240 tgtgcccgcc ggtctgaccg ccgcgatgcc gccggtctga ccgccggtgc gccgccggtt 300 agaccgccga aacccggtga aacacaaatc gaagaactct taaagtcgat gacgacttta 360 ttacttctct ctgtgtttac aaagtgcacc aacagcactc cttacaaaat tttcgactaa 420 actcaaaacc ctaactcaaa actcaactca attgctctct aaagcgatac cgggaagcct 480 cacgctcccc ctctatttat acatgaggta ggcagcttaa agccacgaac caaactcata 540 ctaggagtcc taaacacctt aggaaaccca ctagtacaag aaagaaactt tacataacca 600 atcgtaccaa atttggactc cttccaaatt ctactccgca tcccatacgc acacaataac 660 tccatcgtat gccatatgga atctccatca accacgtgca tcaactcttg cctaagtatc 720 ccgcatgatc tctgaccacc acggacgtcg tcttatcccc aagccgactc ccggtccatc 780 accgcaaata ctctcccaag acatcgagtt acctacacat ggaacaaaca aagaaaccat 840 attccgagac caagctatct ccaactttga ctcattagca gcaaacaata gtattacata 900 cgtatagtat ccatctagaa gtcataatca tggaataaac tcggatatcc aaataaacaa 960 cccgaaaccg aaatcgacac agtatcggcc ggtcagaccg cgggttgcgc cggtctgacc 1020 gcgcattaca cgtcggtctg accggctacc agagcccggt ctgaccggtc cacacaatca 1080 cagcagtacc tgtatattca cctgtgaaat ccaatcatct ccaaaccact tcgtgaataa 1140 attcctaata acaaaaccaa taatctccaa tgcccaattg ttcatcacag aatatgaatc 1200 aaaaacactt ttgattttac aat 1223 // ID RPO_OS repbase; DNA; ORY; 1992 BP. XX AC . XX DT 20-MAY-2005 (Rel. 10.05, Created) DT 20-MAY-2005 (Rel. 10.05, Last updated, Version 1) XX DE Repetitive element from Oryza sativa - a consensus. XX KW Repetitive element; RPO_OS. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-1992 RA Jurka J.; RT "Putative retroelement from Oryza sativa - a consensus RT sequence."; RL Repbase Reports 5(5), 132-132 (2005). XX DR [1] (Consensus) XX CC This is an unclassified element. It contains a minisatellite-like CC tail and is not flanked by reognizable flanking repeats. It could CC be a SINE element or an abundant retropseudogene derived from an CC unknown RNA. The youngest elements are 95% identical to CC consensus. XX SQ Sequence 1992 BP; 467 A; 368 C; 244 G; 913 T; 0 other; aactagctgg gtggcccgcg caattgcgcg gctagcaccc aaacaaaatc atatattttt 60 tagtatgatt ttacttaaaa tttattaaat agctatctca ttgtcttaag actttgaaag 120 accaaacctt atcatcctcg tgtttctaat tatatagttt ttaaaagtca caccagttgc 180 taccccttat gtcatctcct tctttatttg cttgctcgat ctaccactat ttctattcat 240 tcttcttgga acctttaaaa attggatttt atagttttta gagtttattg tcacgttggg 300 tttcattttt ataatttcta gatgtcccgt caaacgttgc cattatactc ctctacggcc 360 cgtccactgt ctcttctctt tattgtcatt gagattttaa aaatcgaaca taattatcgt 420 ttgggttcat tttttacttt ctagaagtcc cgccaaaccg tcagcggctt tgccattgta 480 ctcctctacg gctcgcccgc tgcctccctt ctttattgtc attgagattt taaaatcgaa 540 catgattatc attggttttt tttttacttt ttagaagttc cgaaccttta aaaattggac 600 ttgtagtttt atttttttta taatttttag aagtcccatc aaacgatgcc actatgcccc 660 tctacagccc gtccgccgcc tactctttat tgtcattgtg attctaaaaa tcgaacataa 720 ctatcgttgg aattcatttt ttattttcta gaagtcccgt caaccgtcgg cggctctgca 780 actatactct tatacacccc gcccgctgct tctccttttt attgtcattg agattttaaa 840 aatcgaatat gattatcaat ggggtttatt ttttttactt tctagaagtc ccggcaaccg 900 ccttactcgt ttgcttcacg gcctgcctga cgtccctcct tttaatcgtc attaggattc 960 tatttggtgt tttattaaca atttttatat gtcgtatcaa ccgccaccac tctactcctt 1020 tataggcatg ttacttaatt tatctcgtca tgtgttttag atggtctttt ctttcaatag 1080 tctttatttt tatcacaaat tttagttatt tataaattgt attcctaatt gaaatcttat 1140 ttttcttttt ctaatttcag aatttatttt tttaaaaaaa ttagttaata ccgtattgtg 1200 ttcttttaat gtttttattt ttttattttc aatttcagtt gtttcaaaat tgtattccta 1260 cttgaactct cttttaattt ttctaatttt ggatattatt ttatttttta ttctaaattt 1320 taattaatct cgtattgggt tcttatatgg attcttcttt caatattgct tatttttaat 1380 tccgaatttc agctaatttt aaattgtatt cctacttgaa ctcttctttt attttctttt 1440 gctaatttcg gatttatttt tatttttatt ccgaatttta attaatctcg tattgggttc 1500 ttatatggac tcttctttta atattcctta tttttaattc cgaatttcag ctatttttaa 1560 attgtattcc tacttggact ctcctttcct tttctaattt tggattttat tttattttta 1620 tttcgaattt tgattaatct cgtattgggt tcttatatgg aaacttcttt caatattgct 1680 tatttttaat tccgaatttc agctattttt aaattgtatt tctacttgga ctctcctttc 1740 cttttctaat tttggatttt attttatttt tatttcgaat tttgattaat ctcgtattgg 1800 gttcttatat ggaaacttct ttcaatattg cttattttta attccgaatt tcagctattt 1860 ttaaattgta tttctacttg gactctcctt tttttttttt ctttttctcc gattaatgtg 1920 ggaatttcta gcccccacag cgaacgtggt gcctcctttc aaagctgttt taataatata 1980 atagatagat ta 1992 // ID ENSPM2_OS repbase; DNA; ORY; 10580 BP. XX AC . XX DT 24-MAR-2005 (Rel. 10.02, Created) DT 29-MAR-2005 (Rel. 10.02, Last updated, Version 1) XX DE Rice En/Spm type autonomous DNA transposon, consensus. XX KW ENSPM2_OS; En/Spm superfamily; TIR; Autonomous DNA transposon; KW transposase. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-10580 RA Gentles A. and Jurka J.; RT "Rice DNA transposon ENSPM2_OS."; RL Repbase Reports 5(2), 37-37 (2005). XX DR [1] (Consensus) XX SQ Sequence 10580 BP; 2892 A; 2256 C; 2653 G; 2778 T; 1 other; cactagtaca gatcctctca tctgtgacgg cccatcacat gcctggacaa cgtgggccgt 60 cagaacgaag tcatctcaat cgggcctaaa tttttgccgt tgtagatgta ctcgtcgggg 120 tgcatattcc tatagcccgt caccgatgac actcatctgt gacgggctcg aagttaggcc 180 cgattgagat gacctccact atctcaatcg ggcccaaata ctgagcccgt cacagatgag 240 tgtcatcggt gacgggctcc aaagaaggcc cgattgagat ggccttaatg cccatcaccg 300 atgactctta taggtgtcgg gcttctattt gtgcccgtta gagattagtg tgcgcccgtt 360 agagatgaca tttttttggc ccgattgaga tatactttgc acactatata tactccagca 420 gtccgttgtc tgtagtttat cccactgttc actattttgg tgggaggttg aagggggcga 480 atttttgtaa tttttttgca aacaaaaaca ggaaaatcat aaaagtaagt aaaagggtac 540 taaacatttc ctattaattt agtagtactt atgttatgag atgttaacta atattttgtt 600 cattgttcag cgatggatcg aagttggatg tacacgactg gcttgaggcg tcagtacaag 660 gagtatagag atggcgtatt aagttttatg aaagccgcag aggaggatag gataagaaga 720 aacgacaagt acatgtgttg tccatgtagc gattgcagga atgagatttt gtgggaagat 780 gaaaaggaag tacacgctca cttgatacgc cggggattca tggagagata cacatgttgg 840 gtgatgcatg gagagcaaga tctgggtact gatggtgcag ctgcagacgg aagtggtgca 900 gacaatcatg aagaaggaga tgaagaagag catgacatgt ttgtcccatc tccattgggc 960 ggtgaaatgg ttgatgtgga ccctgatatg ctgcaagaca tgttacgtga cgttgatgac 1020 ccagctatga acgagagaga ttccatgaag ttcagcaggt tggtcagtga ctcggagact 1080 cctctatacg caggatgcaa gccaaagcac accaaattat cagcaacatt agacctaatg 1140 aagttgaagg ctagtagtgg atggtcagac aagagtttta cagaactttt gggaatactg 1200 aaggacatgc ttcctcagga gaacacattg cccgagacga catatgaagc aaaacaggtt 1260 ctgtgtcccc tagggttaga ggtccggaga attcacgcgt gtccaaacga ttgcatattg 1320 taccacaagc aatacgcgga cttagatgct tgtcctgtct gcaaggcttc tcgatacaag 1380 cgaaagaaga gcgcgggcga gggaaagaag tcaaagcggg gtggtccggc gaaggttgtg 1440 tggtatctac caatcattga tcgtttcaag agaatatttg ccaaccccaa tgaagcaaag 1500 ttagtacgtt ggcatgccac agagagaagg aatgacggtt tgctaagaca ccctgcggat 1560 tcgattcaat ggaggaatat cgatcgaaag cacaaagact ttgctgccga ccccagaaac 1620 atgaggatat gtttgtgtac ggatggcatg aatcctttcg gagacatgag cagttctcac 1680 agcacttggc cagttctcat tgcgaacttt aacctcccgc catggttgtg cttcaaaagg 1740 aaatatatta tgttgtgctt gttaatccaa ggtccgagac aacccggcaa tgacatcgat 1800 gtgttcttgg agcctgttat cgatgacctt gagattctgt ggaaagaggg tgtggaaact 1860 tgggatgcat atggtcagga gaacttcaca ctacgagttc tattgttctg caccattaat 1920 gattatcccg cgctgggtaa tctttctgga caaaccgtga aaggaaagaa ggcatgctct 1980 gactgtatgg aacatacacg cagtaggtgg ctgaagaaat caagaaagat ggtttacatg 2040 ggtcatagga gatggctccc cctacggcac gcctttagaa gaaagaagaa aattttcaat 2100 ggtaagaaag aacttgggtc tgcccctgcg gatttgtccg gagatcaggt acacaacatg 2160 gtgaaggaca ttactaatga gtttgggaag aaaagaaaac gtagcaagga ggacaagaag 2220 aggatgtgga agaaaaaatc catattttgg cggctacctt attgggaaga tcttgaggtc 2280 cgtcattgca ttgatctgat gcacgtagag aagaatgtgt gcgatagctt gctggggcta 2340 ttgttgaata tgcctggcaa gacaaaggac gggttgaatg cgcgtctcga tctacaggag 2400 atgaacattc gcagtgaact tcagcctgtt acagatgaga agacgggaag agtgtacctc 2460 ccaccagctt gccacacatt gtcgaaggat gagaagatcg caatgctatc atgtctggca 2520 gatattaaag ttccttcggg ctattgcgcg agaataagta agtacgttaa attggaggat 2580 cttaagctgg ttggaatgaa gtctcacgat tgccacgtgc taatcacaca gatcttgcca 2640 gttgctataa gaggcattct accaccacaa gtccgtcaca cgatccaacg gctttgtgcc 2700 ttcttcaatg caatcggtca gaagattata gatccagaag acctagatgg gttgcaggcc 2760 gatattgtca gtaccctgtg tcacttggag atgtattttc cactagcttt cttcgatatc 2820 atggttcatc tcactgttca cctagtgaag caaacaaaaa tatgtgggcc agcttttatg 2880 agagaaatgt ggccattcga gaggtacatg ggaattctga agtcctacgt tcggaacaga 2940 gcaaaaccag aggggagcat cattgaaggt tacacgaccg aggaagccat tgagttttgt 3000 atcgattaca tggccgagac tgatcctatc ggagttccta cgtctcgcca cgaaggaagg 3060 ttggcaggtg tcggcacaac tggcagaaaa agaattgttc ccgatcaagc ttcctacgcg 3120 caggctcatt tcgcagtgct gcaacatatg gctgaagtaa ccccatactt tgaggagcat 3180 ttagcgaagg tccgacagga caatattggt cgatcagata tttggatcaa cagagaacat 3240 ggtgctcgct tcaacgaatg gttcaaggat cgtgtagcac ggtcgaccga tggcccaagt 3300 gagatattac aaaggttggc aaggggtcca tcttgggatg ttgacacatg gcaagggtac 3360 gatatcaatg gatacacatt ttacaccgtc acacaagatg agaaaagcac agtgcaaaac 3420 agtggagtcc gtatagatgc atatcaggat caggctggat cgagcacata ctatggccgc 3480 atagagcaga tatgggagct gaactatctg aacttcaaag tccctttgtt tcgttgcagt 3540 tgggtgaata tccgcacagg tgtcaaggtc gacaaggaag gcttcacatt agtggacctg 3600 gccaaggttg gatacgcaga cgaaccattc gtactagcga agcaggtcga acagattttc 3660 tacataaaag accccgcaaa caagaagatg cacgttgtta gggatggcaa gcgaaraatt 3720 gtgggggtgg acaacgtcgt cgatgaagaa gaatacaaca agaatcttca tgtcagacct 3780 cagatcgacc ttgacgatga tcccgaagac gaagtggctt acgttcgttc agaccattcg 3840 gaaggcatat cactgtgaat gatgtattta atttgtattg gagccttaat gaatgaattg 3900 catatgtttc atgccattcc agttaaaact ctttgaagaa atggatttgt taattatgtg 3960 gttttaaaaa attatacttg ttattttaaa ctatatgtga gatagccaat tgttaattat 4020 atgaatttaa aaaaagtaat atgaatttta aactatatgt gagaaaggca attgtcaatt 4080 atatgaattt aaaaaattaa taggaatttt aaactatgta aataagacat ttgttaatta 4140 tatgtgataa atcaaatgta atagcaattt taaatcgggt agaagataat tataaatgat 4200 ttttataact taaaaatatt ttaataagtc atctgtgacg ggctttagta ctatgcccga 4260 tagagattat tccatctcta tcgggcttag ttctaatgcc cgtcacggat aggtatcatc 4320 cgtatcgggc agagtactaa cgcccgtcac ggatgagtgt catccgcatc gggcatagta 4380 gtctgcccga tagagatgag gattgactag ggtttactta gtcaatcctc atccacgggt 4440 ccttatccac cgccgacgcc gcctctcact ctctcacact ctcactctct cagatccacc 4500 gcctcctccg cgcccaagac cgccgccgcc gccggcctcc tctccaagtc cgtgtcctcc 4560 atgcccaaga ccgccaccgc cggcttcctc tccgcctagt cctcaagacc gacgccgcgg 4620 ccgtttcacc gaccgccgcc gcctcctcgt cctcaacgct gtcgcctcct cctccctcga 4680 agatccggcc tcaccgacca cggccgcctc acatcctcct ctccagatct acgcccggcg 4740 gccgtcgacc tcgtcctagc cgccgcgtcg acctcctcca cgccgctacc tcctcccggg 4800 ccgctcaaga tccggcctcc ccgacggcca ccgcctccct ccacgccgtc cccgagcccg 4860 gcgccgccca agaccgccgt ccccgagccc ggccctccct ccacgccgtc cccgagcccg 4920 gtgccgccca agaccgccgt ccccgagccc acgtcaacct cctcaccgag cccgccaccg 4980 tgcaaggtag gtactcctca ccgatgatga tgcataatgt gatgatttgc tgtgtacatg 5040 ttatatgtga tgatttgatg attcgatgat aatgtttaaa ttcgataatg tgatagtgcg 5100 attatttgtt gattcaatgt ttagatgcta atgtctacat atgatgactt gtgctagtga 5160 tgaatttttg tgttagctag tgatgacttg tgcattttta tatgtgttag ctagtgatga 5220 atttttatat ggctgtgatg acttgtgcat ttttatatgt gttactagtg tgaattttta 5280 tatggctgtg atgacttgtg catttctata tgtgttagct actgataaat ttttatatgg 5340 ctgtgatgga tgaatttgtg aatttggggg agaatgggat gtgatgaaaa ttgtttagat 5400 gtgggctgtg atgatgaaat attgtgggct atgatggatg aatggccagt gatgattgct 5460 caagaacata ccatttttgg gatattttgg gtccaatggg atggatgaat tgatgtgggc 5520 tgtgatggtt gaattatttt gggggaaatg tgagttttgg tatgtttttt atggctgttt 5580 ttctatggct gtttttttac tgcataagga cagaccctct acagttgttc ttatatagtg 5640 tttgcaaaat ttttgggata ttttgggtcc aatgggatgg atgaattgat gtgggctgtg 5700 atggttgaat tattttggag gaaatgtgag ttttggtatg tttttattac acttgttcat 5760 tttatttggg ggagtggcag tatgggatgt tttgcaaaat ggatgcattt ttgggccggc 5820 ctcactcttg ttcttgttta ggtttaaatg tgggttttgc ataagaacag accatataca 5880 cttgtgattt ttgggttttt tataagaaca gccatctaca cttgttctta tatggtgttt 5940 tttttttcat aaggacagac cctctaactt gttcttgttc tttgcaaaat ttttgggata 6000 tttttggtcc aatgggatgg attgggttgt ttgaatatta gctgtttctt tttttaagga 6060 cagaccctct acacttgttc ttaatttctt ttgggggtgg ggcagttgca aatgatgata 6120 attgaagcat aatttctgag caaaactgag gccaaactta ttatatgtca tgacttgtgt 6180 ttttttaggt aaaaaataat atatatgtga cttgtgtata tgggcttttt gggtcatttt 6240 gagggaaatg ggatggatat gcatagaaat ctgttattaa atgaagttac tgaaattatg 6300 gcatttagga gaatacgaag tgtcctggtt gccaaatctg gtttggtcgg gttactgcct 6360 gcacggtacc gaccaagaca aattggtaaa cagaacattt cgttcaaata caacatttct 6420 agaaatctgg agtttgctga tgataacgtt agggatcttg gataggaagg gttttggttg 6480 cctgtgtgtt ctatctgcat ccgcctcgtc agcagatatg tagcatccat attccttagg 6540 gccggagcag acgggatctc gacctcgaca tccatatccc actagaactt gctaccgttg 6600 ccactatctt atgttagtga cattgatagc aagttcgagt gggatactga tgtcgaggtc 6660 gagttcccgg ctgctccggc cctattgagc atggatgcta tggttccgtc gacgaggcga 6720 acgcaggtag gagatagagg tatatcaaac cataagagaa tgtgtgtaga tgcaattttg 6780 tgtttaaaaa gtactttctc cccgtacaac agtgacatag gacatgtcgc agcaaggcga 6840 accgatgtcg acgaccacta ctgggactac atcgagccga atcctaggac ccagaataag 6900 attcctaagg aagtctacac cataacagag gtggacgatg ttggatatcc gacggctccg 6960 acgaaagctg tcaaaaagtt ccctacgata tgcggagtcc tagggaggcg gaacttcact 7020 attctgaagg accacatcga tctggtccct caagaagaaa aagaagaggc ctggaggcag 7080 ttcaaggaaa gcttccgata ccctacagag gccgaggcag gactgaagcg gcaggctatc 7140 cgcaagatgg ggaattgttg gaaaaatttc aagacaacgc tggtcacgga gtacgtcctc 7200 aaccccgccc agccagaacc atttgggaaa tacccattca tcacccaacc cgtgtgggat 7260 gagttccatg cgccaaatca acgaaagagt ctcgggaaaa aagccagacc taccgtgatc 7320 tgcaggcaag gaaccttcac ccgcaccggc tggcaccgga ggctacgcgg ggaaacaggc 7380 agaatgggac aaggaggatg aagctgcagc ggaatctaac accccgcaag tgcttgctga 7440 tatcccggtc cagcgggcaa ggaactgggc aagggcaagg gtgaagaaga atagtgacgg 7500 aactctttcg ttcccaaatc ccgaagatca agcggtgtac cagaaaatcg taagttgaac 7560 acatagaata agtttcatta tgttgtatct tgttcttcgt ctaacgcgtc ctaactgtac 7620 cccaggtcga actgaatgct gagagacagg cctcccaaga ggtctgctca caaaaacgcg 7680 aggatgacat cctcacgaaa gcgttgggaa agaagaacac cgtggacgaa caaggggcat 7740 tggctccaat gttccatgga agtttgggtt tccccaatac gcgtggcagt acaagaagca 7800 caagctttcc aaggcgcaga aagctgcacg cattaaggcc caacttcggg aggagcttaa 7860 agaagagctt agagaagagc tcactgccga gctgttaggt atggaggctc ggatggaggc 7920 acgcatcagg gataggtcga ccgatgccac tcccggtccc tagtacaagt gagccccacg 7980 cagaggcgta gcagctgcgc atcaactgag gctccggcag aacagcctga aggccccgcc 8040 gcggtggacc acataacggt aaaaacaact taataacgca tatattatat tagcaccaca 8100 atacattgca acatatacta aggacactaa tgaatcatcg caggaaccca catcgtgtac 8160 cctagtcgtt agggtgacac caggatttgc aattcctgcc gcagagggtc aagcattcaa 8220 gcctacccga gacccgagtg catggggcgc agctgcaagc cggcaatgcc aaagttcagg 8280 tggacttagt gaagcccgat tgggttggct acactatccc acacccacct aatgacgaga 8340 ttctgaccct tggggctgca cgtgggacct ttattcaatg gcccaagcac agcattgaga 8400 tcaatataac tccaaggcca gcgccaagtt ctcgtccgcc gccgacgcgt ccccatcaaa 8460 ctgttgtatc tctccctcct gccgttgaac aaagagatga agatctccaa ttacagtatg 8520 atactgattt tggggacgag gtatggaggt tgacagcagg ccgcacctcc cccctcctgc 8580 caaaaggagc aagagggcga aatcttctcc acccaagctt gacacacgca gaaaagctgc 8640 tggaacggga gaggaaaaat aaaggtgcca ttagccccaa agaagcttga tcttggcaag 8700 gcgccagtag ctcctccaaa gcctcagcaa attcacattg ggcatgccat tggtcggaga 8760 cgatgcctta ttcaagatgg gccctgcatg caaggagttg cacggtacta catggaaagt 8820 ccaacgcaag gaggaagaat agagagacct ccatgttggg ccagcacgat ggtcagccgt 8880 tcctcgggcc tactgccttc atcgccgtag acttcaaaga tctatgggac ctctacaggg 8940 tgcgagcgat cgacaccaac ctccttaagt gctactcctt gtaagtattt cttggtagcg 9000 atatggtagt gatgtccata aattacgctt accctgactc ttgtcttgct cgtaggttaa 9060 cctggaagca tgtccatgta aagcacccca tgttgcctta ctcgatccag ctgtcgtcaa 9120 cgagacaacg ctgaaaaacg atcgagcaaa catggtggct atatcaagga ctgcttattt 9180 gcccgtcaag acaaggactt cattatgtgc gcctacaatc aacagtaagc gtgtaccgta 9240 cttatactca aatactcaac gcgtacaact gtagtatgta actggcaatt taataatttc 9300 gcaggcgaca ttggattctt ctggtaataa cgccgaagtg gagtttggta cactacctta 9360 actccaatat caagccagaa atatacgatt ggtcggccat cgaatctgcc ttgaacgagg 9420 ctgggaccaa tacgtggcaa gaggcgggag gcataaggat gggcatccca aactcggtca 9480 caagaaagac ttcccaatac gtcaacaagt tggcgaccag tgtgggttcc atgtctgcca 9540 taacatgagg agcttcgcag aaaaggtgac attgctcgac cctgaggtgt gtaattcaat 9600 tgtttataca cacataggac gacaaattta caagtatgta gactaacttg gcgccgaaca 9660 tgcaggaatt tatttcaagg attccggaaa tcaacttcga aatcattaga gaggagatag 9720 cacaattcat actagatgat atcttgtcac cgaaagggat gtttagagtg aagtcctagg 9780 tagctcgtct ctgtatatac ttgcatttct agttacatat aaaattgttc caatttataa 9840 cttatttttg caggttttga tgcatgtcgg cggtttggag agaaaaatgg atgtgaatga 9900 catatatgtg aatgggttgt ggatgtgaat gtatatgtgt ttgattttgt gaattggctg 9960 tgctgtgatg gaatatgaat gtgaattgct gatgtgatgc tgggaatggg tctatatgaa 10020 atggctgtga tggaatatgt gaattgatgc tgggaatggg acttatatat atgcttctgt 10080 catttttgca gcgggcatgg ctagcaaagg cctgaggcta gccaaaaaga caaattttat 10140 ttttttgttc taaactcatc cctgacgggc atttagctaa tgcccgaaag agataactca 10200 tccgtgacgg gcttttagaa tacacccgat agagataagt cgtccgaacg ggactagttt 10260 gactcaacac gtggggtcaa acctatcggt gacgggctct ggctaaatgc ccgatggaga 10320 tgactactca tccgtgacgg gcttagtggt gtgcccgatt gagattagtc atccgtgacg 10380 gctcctatac gctggtttga ctggtcatac tcatctgtga cgggctttgt tttcggcccg 10440 attgagataa catccatccg tgacgggctt ttgcccgatt gagatttttc ctcacatcag 10500 tgacctttgc ccatgacggg ggccttaccc gatagtgatg atgctttcag cccgtcacag 10560 ataagcgatc cgttctagtg 10580 // ID SZ-22 repbase; DNA; ORY; 4404 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE Rice gypsy-type retrotransposon SZ-22. XX KW LTR retrotransposon; GYPSY superfamily; RIRE4; SZ-22. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-4404 RA Jiang N. and Wessler R.S.; RT "SZ-22: a gypsy-type retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 79-79 (2002). XX DR [1] (Consensus) XX CC SZ-22 is a gypsy-type retrotransposon. It has 759bp LTRs. CC Similar to RIRE4. XX SQ Sequence 4404 BP; 1374 A; 951 C; 880 G; 1199 T; 0 other; tgatgaaccc tgagttcctc tcaacactca aggctgttgt tggcccgatc tttcggtgag 60 ttgtgataac tacgatttgg gagaaatgtt gacgatccga ctacaaccgt acaagacgtt 120 ctgttgcgcc ttagcgatcg atacgcctct ccgtgggttg ttgatcttgc cagtgcagat 180 caatcttatt cctgcaagca aatcgaagaa acaagcaaga acaagataaa agcaatctga 240 attacaaata ggaatgaata cacaagataa gttggggttc cgaagaacaa gcagacggac 300 ggtctagccg acacgcgtgc tgcaagcaag tagcaatggc taaactttaa tctatcaaaa 360 cccaagaaac tctaaagggg tacctaacta tttaaggagg tgggaggacg acctaagggg 420 accctagggt cgtgctccac ctggttgggg cgcaccccac atgggcccca cttgggccgg 480 ggttccagac gaagttataa gcccataggc cattataggt gacgcaacac cttctttttg 540 tgatttcggc cgactaggat ggaatttggc gatgaagctg gatccattgg aaagatgact 600 ccgagagctt tccatcaagt actcatggac ccaaaatgga gctcgcatgc atatttggcg 660 gccgtttgaa gtccatactg tagcaggtgg ccgaactgga ttgcagaact tggacggctt 720 gatcttgatg tgaacgacgg ttgtatctat agtagctatg gtcacatcat cctccccttc 780 ttcacggaaa accgtcctcg gtttttccat atggtgctct tcgtgtagtc tatttaaaac 840 aacctgtttc ttccaatcac aacaagacaa actcgagata attttgttag caataacatt 900 tctctctagc ttgcatgttt tatccacaag tacaggaggt tctaaatctg aacagatgta 960 aactctatgc accaaatata ttcctctatc attatattca ccaaagagat gaaaaatagt 1020 gttacttgga catggcaaat cagacttagc aaataatttc tccttcaaat tatcgagctc 1080 atgaaaatca gcaaactgaa catagcccaa agtatttaaa gaatatgtca attcacgttc 1140 ctctactcta ttagcaatgt gaacaacatg cttaaaatca gcgcagttag tattaacaac 1200 aggaatagca tgttcattca ctagttgtgg catggatata agtgaagcat tatcgcacaa 1260 ctcttcttta tcacaaggaa cagcaagtaa atcaatttgt gacaaaggca actcagcaat 1320 tgattccact aatggttgct ctactatagc atgaaaagtg gacaagtata gctcaccttg 1380 agaatactca ccttcatttc tctcagcacc atttaattta ccttgcgaac tttcttcaga 1440 catcgtaggt gcttcatcct ctttcttctc aagtatacca ttctcctttt cttggatgtg 1500 ctgatcttcc tgcaaaacgt tagtaacagg ggagacaaaa gattgctcct ccaatgtttg 1560 cacatcatca ttacataagt atattgggga ttcagaaata ggagataaat cacattggtc 1620 atgcatcctc gcctttgata tgatctaact ctcaatgcta cgagcaagca tgaataggtg 1680 cccaatataa ttatatgtca cattatcaag caaaacctga atttcagaat taagcccatt 1740 gaaaaatcta cgcattgtat tttcattgca ctctttgaga ccactgtaga tgatacagac 1800 cttaaattca tgaatgtact ccctaacagt tctatcacct tgtttcagat gttctaattt 1860 ctcccaaaga gtacatttgt aataagaagt cacaaagcgt tttctcatca tggttttcaa 1920 ttcatcctaa gtttcaggtt tattactaac ataagtccac caaaataatg cagaagaggt 1980 aaacttatta ctagcagcct taatcatttg agcatcagaa aaatcatata tatcaaattc 2040 attgtctact gctagctccc aatcaatgta tgcaacagaa tcaatacttt ccatcataga 2100 atggtaactt agatgcaact tgttcaaaat tatagtcatg tacctcatat gcatcacgtg 2160 gagaagtcgt catatctcgt cgaaggtgta gaagtcgatg ttctcgtatt cccttacgca 2220 atcctgccat ggttagaagc aaacaagaaa cacacaaaaa tatgcacgct cctatcaact 2280 actaggtagt ggcagctcaa atatcacaca cactcaagct tttaacgaag ctcttacaag 2340 ttcttaccaa agcaagcgga atggtgatgt acaccgactt aaccaagcac cccaatggag 2400 attggatgta tcgatgcctt gggaaacact tgctgtacgg ctgcaatcat atctgtggag 2460 ctctgggtag gcttaaatat gtagcaaagg gatagcaaat gctcaaatca gagaatgtaa 2520 agttgaataa tggttcaaag tcaagtaccg tgctggtcct aggctagaac gtactagaga 2580 ccgagcctag acacaaacga taccacaaga tagcactagg aacaactcat gcacaactct 2640 gatatatgaa gttcagctca aacataacag tattttctct tttctttctt tcttctttct 2700 tcttttcttt tttttctttc ctttcctttt ctgttttttt tggtgcagtt tttttttctt 2760 ttattttttt atgcaccttt ctgccttttt ttctcacttt tttcttgatt ttttttaaca 2820 aaaactgact caaggacctt aatgtaaggt tacaaggact caaacgtaaa tataaaattt 2880 acagggactc aaatgtaaaa gtctaaaccc aaaattcaaa ttatacaaaa atggaatgct 2940 gaatttatgc cggttccgtt tttccaaaca gatctcaaaa ccgataccaa acaaaaattc 3000 accaaggtgt ttgacacaac ttggaaccgt gaaagggagg gagggagtcg gactcggcca 3060 aagggacgag tgggagtcgg ccaggaggtg gagtggatgg tagccgataa ttaggatttg 3120 gtgtatggga taaaaatgaa actgattttt aaccaatcca atctactata tctttccaaa 3180 acaaacttga ctacttccaa aatcagattg gtaattcact ttcctcctct cgtgcacgac 3240 acaggcacgg ccaaaacaga agcacggcaa tcagcaaacc caagatgcaa ctcaacaact 3300 ccaaatccaa ccgatagaaa cttttgaaaa ctacaaaaat agaatcgtgg cagcaagccg 3360 attccgtttt cgtaggtccc gacgataaca gagacacaga ggcgacgacg actctggtat 3420 aaaacatgac cagaactcga aactctaaac gaactagacg ctaagaccag caacacgacg 3480 agacgatgca acacaaaatt caacaaagca aaaactgaaa aaaacaatgc aatggcacaa 3540 tatggctagg taaatgatac ggattttttt tgtatggcta ttttctggtt ataggaagat 3600 aaaaactcac cgagtaatga aagctctgat accacctgat gaaccctgag ttcctctcga 3660 cactcaaggc tgttgttggc ccgatctttc ggtgagttgt gataactatg atttgggaga 3720 aacgttaacg atccgactac aaccgtacaa gacgttctgt tgcgccttag cgatcaatac 3780 acctctccgt gggttgttga tcttgccggt gcagatcaac cttattcctg caagcaaatc 3840 gaagaaacaa gcaagaacaa gataaaagca atctgaatag caaataggaa tgaatacaca 3900 agataagttg gggttccgaa gagcaagcag acggacgatc tagccgacac gtgcgctgca 3960 agcaagtagc actggctaaa ctttaatcta tcaaaaccca agaaactcta aaggggtacc 4020 taactattta aggaggtggg aggacgacct aaggggaccc tagggtcgtg ctccacctgg 4080 ttggggcgca ccccacatgg gccccacttg ggccggggtc ccagagaagt tacaggccca 4140 taggcccatt ataggtgacg caacaccttt tttttgtgat tttggccgac tgggttggaa 4200 tttggcgatg aagctagatc attggaaaga tgactctgag agctttccat caagtaatca 4260 tggatccaaa atggagcttg catgcatatt tggcggccgt ttgaagtcca cactgtagca 4320 ggtagccgaa ctggattgca gaacttggac ggcttgatct tgatgtgaac gacggttgta 4380 tctatagtag ccatggtcac atca 4404 // ID HELITRON1_OS repbase; DNA; ORY; 10182 BP. XX AC AP002484; XX DT 10-JUL-2002 (Rel. 7.06, Created) DT 29-JUL-2005 (Rel. 7.06, Last updated, Version 2) XX DE HELITRON1_OS is a rolling-circle DNA transposon. XX KW Helitron; DNA transposon; Transposable Element; HELITRON class; KW HELITRON1_OS; helicase; replication protein A. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-10182 RA Kapitonov V.V. and Jurka J.; RT "HELITRON1_OS."; RL Direct Submission to Repbase Update (MAY-2001). XX DR GenBank; AP002484; Positions 128092 138273. XX CC HELITRON1_OS encodes the 1635-aa OSHEL1p and 280-aa OSRPA1Hp CC proteins. CC OSHEL1p is composed of the rolling-circle initiator and DNA CC helicase domains. CC OSRPA1Hp is similar to the RPA70 subunit of the replication CC protein A. XX FH Key Location/Qualifiers FT CDS join(6812..6955,7048..7449,7696..7800,7886..7960, FT 8092..8187) FT /product="OSRPA1Hp" FT /note="similar to the RPA70 subunit of the FT replication protein A" FT /translation="MAHILISQLSCGDSNIRIKARVSRLWDFHDLNDDRKI FT VHTDLVLLDETGNSIHAQMYQHVIVNLKPLLQEGKVYYIDSFTVRYANRTY FT RPVAHSLMILFTKWTTLEECVDVPADFPAITFSLTPFGDVPSLVDKNIFYV FT GNNLSIPSYYIYTSFASLQHLLNLYHIQTDIMGVIAEIGTTSTRATAFDAE FT NIYNAGQRQPQVVVFVGTLVKNYKGLGLTLTGSSPCKWYINFEIPEVVELK FT ERWNDAPPAGFNQSNPQEKTLKDILDLNPHKHK" FT CDS join(44..202,237..410,855..971,1187..1291, FT 1711..1971,2062..2127,2211..2351,2500..3381, FT 3536..6529) FT /product="OSHEL1p" FT /note="composed of the rolling-circle initiator and FT DNA helicase domains" FT /translation="MVLVHGLSATAMWAIHFFFVRTNHRTCLCERLVLCVS FT ALILFTCTVGTDLRSSLFYAVHCVHGVCDLIATCSSTNWKHPYTIGSFLSR FT PHHNSLHMVYAPWVSALWGTSFCIQIVSFLGVPDLCLFIIDRLILVFHRGE FT DLHGLDRSFKGDFGFQLVFLVVASVISLIADRLSFQSPSFFRRRLEDMSDQ FT GLNRVRRVRASRERRAANILSRQLPMHIEHTIVEPVQSTCGNERKRARSIM FT NFTPELSKLNRQRRSLLSSKMPPLALTCTNNVLNAHNSGSSSRTDKEYVQS FT LKACYPGRSYYGPPTYECPYCGAMFWYQERVKSTSAISKRKIIYNLLQRID FT KSINTGNAPYVFKINGVVHHWIGCLLPSHGSPPKFAQLYIYYPENETQNRL FT NIFENDGDNADRADPEIIAALSLMLDSENSLVQNFRYARERLSEHGNQQLT FT LRLLGCNAKDDVQYNLPTSGEISGIIVGDFLAKEYKFDVLVYDKDHGLHQV FT SPLHPSYMALQYPLLFPYGERGFHLGIKYNNYDGIGRKYVTMQEFFRYRMH FT YRLNEPNPFTCYGRLSDQIDVDVFSTIEANRLQFFIDHQPELRAESVDGIV FT DAIDGIVDAIDRGVTDGDSVGKRMILPASFIGGRRYMYSLNIQVCDYLLFK FT IIPVLYTVEFQKRGLPHIHCLVWLAAPTAEISASVIDGFICAEIPDYDTDR FT LGYELVSEFMMHGPCGDANKSCACMKNNKCSKNYPKDFQDETIIDEAGFTI FT YRRRNDGRHIIKNGIPLDNRSVVPYNMKLLKTYQAHINVEWCNKSNLIKYL FT FKYITKGQDRARIYFETTGKTTNASPNHDLAPQDEILEYMDGRFLSTCESL FT HRLFEFDIHYRMPSVERLVVHLPGKNYVRYEKGSNLRAVLKSPAAKSSMLT FT EWFEANKKYPKAHSLTYCEFPKEQTWEPSSRVWRPRTPAPKIGRIYYVHPT FT AGELYYLRMILMIVRGAQSYADVRTYNGIVYSTYREACEAQGLLEGDNEWY FT LLFDEAILTASSQQLRQLFVTILLYCSVIDVRSLFDKYWIHMTDDIHNRLK FT KALDNPHCIIPQDHLLNLLLHELATVFAKSGGDIKDFNLPHPTSIAHIAGG FT NRLIDEELTIDPLMLSMHADSLITQLNTEQKHIFDVISSRVAHNQPGFFFV FT CGHGGTGKTFLWNAIIAKLRSQNKIVLAVASSRVASLLLPRGRTAHSRFKI FT PIDIDETSICNIKRGSMLAELLIEASLIIWDEAPMTHRRCFEALDRTLRDI FT LSQTCATNSIIPFGGKPVVLGGDFRQILPVVPKGSRHAIVNASITNSDLWK FT HVTVLTMNINMRLLNTNLEQKQKDELHDFSKWVLAIGNGTIPMTTKEGESY FT PSWIEIPHDLLIITDGDKISAIVNEVYCDFFASYMNPEYLASRAIVCPNNA FT TIDEINDYVIGLVPREARIYLSCDTISKCAEQIPDFDLLYPPEFLNSINAA FT NFPTHRLILKEGVVVMLLRNLNQSIGLCNGTRLLIVALGDRILQCIILIGS FT NIGDTVYIPRITLSTTKMKWPFTLQRRQFPIRVCYAMTINKSQGQTLQRVG FT VYLRKPIFTHGQLYVTISRATSRSGLKILIENDDGSCGNHTRNIVYSEILT FT ATFPAVLFLTLPYTL" XX SQ Sequence 10182 BP; 3051 A; 2026 C; 1826 G; 3279 T; 0 other; atgcgagtgg ttgcttcctg tgtttcatcg atgaccttgg tgcatggtct tggtgcatgg 60 tcttagtgcc actgctatgt gggccattca ctttttcttt gttagaacca accatagaac 120 ttgtttatgc gagaggcttg tcctttgtgt cagcgctctt atactgttta catgcaccgt 180 tggaactgat ctacggtctt ctatgtatgt tttgtggccc ctgttttgct tttagtctct 240 tctatgccgt gcattgtgtt cacggtgtat gcgatctgat cgctacctgc agctccacta 300 actggaagca tccttacact attggttcgt ttttgtctag gccacatcac aatagcttgc 360 acatggtcta tgcaccttgg gtctctgcat tgtggggtac cagtttttgt gtgtgctggt 420 tggaccacca gcatttgtcc atgtcttaat ccattgtact caatcatata ctgttgcatt 480 tcacttagtt gagtgatagt tctactagag gcaaaacaat tgtttcactg ctactgggac 540 cgcctgtcat ggtgttgaca gttgtctatt tgttattggt gggtaccttt ctttcacggt 600 ggatatgaga ttgcttttat tttttaagct aaaatagcat attggtttca tccttatatg 660 tatcgcctcc aatattgctt gcttccttcc tcttgcttct cgccttatct cactgcattc 720 agttgtgtgt tgttcaccga tttcacacca ctgatcgacc tattatcatt gtgctaaatc 780 atccattact aatggcaggg taataattgg atttaaatgg atttcttctt ttttatatgt 840 gtggattcaa ttagattcag attgtctcct ttttgggtgt gcctgatctg tgcctcttca 900 ttattgatcg tttaatacta gtttttcaca ggggagaaga tttgcatggg ttagatcgca 960 gtttcaaagg ttcttgattg tttttcgtaa taagtgcaag agctgctgat gtgatttggc 1020 aggtattctt ttttttctct tttcttctcg acattttgtg acataaatcg tattcttttg 1080 gctgcattcg gctcaagatt attctgtact aatctttttg cgtttgtcat gcagctctga 1140 tcggttctgt gggtagttgt tcgttgttat tattgctgct ttaggagatt tcggatttca 1200 gttagtgttc ttggtggtag ccagtgtgat ctctcttatt gctgatcgtc tgtcgttcca 1260 gtccccgtcg ttctttcgtc gaagactcga aggtaattta ttacttcata ctgtttattt 1320 ttgcgtggtt tttacaagca aattacctat cagttttgtg atgtatgctg catctctgta 1380 tgcatggatt ggtttctccg tatcaacatt ctttttgtca ttgtggagtg ttcttttgtt 1440 ccttgtgtaa aaattactag ctttgtttga atcattgctt tgtgtgttgt ggttgtacga 1500 gagagaacgt acatgcactg ttataacggt tgagtgtata ctttctacta gctgttacat 1560 agatggtcat gcatatgttt cttttttttt tatgtctcat ctctcttttt agctatggtc 1620 atctttcctc cccttaccta ttttttcctt tctccatata tgacttccta gctcctcttt 1680 cctttacatt ctcatgttat gctgtttgta gacatgtcag atcagggttt aaatagagtg 1740 cgcagagttc gtgctagccg ggaaaggcga gctgcaaata ttctatctcg acagcttccc 1800 atgcacatag aacataccat agtagaacca gttcagtcta catgtggaaa tgagcggaaa 1860 agagcacgtt cgattatgaa tttcacacct gagttatcta agttaaatag acaacgacgt 1920 tctttgctaa gctcaaagat gcctcctctt gctcttacgt gcactaacaa tggtatgtag 1980 gttatttttc atgatatatt cataatatat caaatcacat ataggtttgt aaaaatattc 2040 ttggaatatt tgtttgctgc agttctcaat gcacacaata gtggtagctc atcacggaca 2100 gataaggagt acgtgcagtc actaaagggt ctgcacccct actacacata caatagtctt 2160 ttttttattt ccaaacataa attcttactt tgttcactgc gtatattaca gcgtgttacc 2220 cgggcagatc atactacggt cctccaacat atgagtgccc atattgtggt gccatgtttt 2280 ggtatcagga aagagtgaaa agcacttcag ctatttccaa gcgaaaaata atctataact 2340 tgttgcaaag gtggtaaaat acaattgccc aaattgcgcc ctccccctga accacttgcg 2400 acattaataa attttaatgg cgatgcacga tcaaagagat ttttgaggca gatacgatca 2460 tataactcga tgtttgcttt cacttcaatg ggtgcaagta tcgacaaatc aattaatact 2520 ggaaatgcgc cttatgtttt caagattaat ggtgttgtcc atcattggat tggttgtctt 2580 ttgccatctc atggttcacc tccaaaattt gcacagttat atatttatta tcctgaaaat 2640 gaaacacaaa acagactaaa tatttttgaa aatgatggag ataatgcaga tagagctgat 2700 cctgaaataa ttgctgccct ttcattgatg cttgatagtg aaaatagcct tgtgcagaac 2760 tttaggtatg ctagagaacg actttctgaa catggcaacc aacagctaac tcttcgtctc 2820 ttaggctgca atgcgaaaga tgatgtgcaa tacaatttac caacaagtgg tgaaatatct 2880 ggcataatag ttggtgattt cttagcaaaa gagtacaaat ttgatgtgct tgtctatgat 2940 aaagaccatg gattacacca ggtttcgcca ctgcatccat catatatggc cctgcaatat 3000 cctttattat ttccatacgg tgaacgagga ttccatttag gcattaagta caataattat 3060 gatggaattg gaagaaaata tgtgacaatg caggaatttt ttagatacag aatgcactat 3120 agactaaatg aaccaaatcc tttcacatgc tatggacgac taagcgatca aatcgatgtt 3180 gatgtgtttt ctactattga ggctaatagg ttacaatttt tcattgacca ccaacctgag 3240 ttacgagctg agtctgtaga tggaattgta gatgcaatcg atggaattgt agatgcaatc 3300 gatagaggtg tcaccgatgg agattcagtt ggcaagcgca tgatacttcc tgccagcttc 3360 attggaggaa ggagatatat ggtaatgaat tatcaagatg caaccatctg atagagctga 3420 tatcattgtg cgtgtattta atatgaaagt taatgaattc ataactgaca ttagagaagg 3480 cagaactttt ggtaaagttc ttgtaggtat ttttgctcct tcctatttca tatagtattc 3540 cttaaacata caagtatgtg attacttatt atttaaaatt attccagtac tctacaccgt 3600 tgagttccaa aagcgtggac tcccacacat acattgcttg gtatggcttg cagcacccac 3660 cgctgagata tcagcatcgg taatagatgg ttttatttgt gctgaaatac cagactatga 3720 cactgatcga ctaggatatg aattggttag tgaattcatg atgcatggtc cgtgtggaga 3780 tgcgaacaaa agttgtgctt gcatgaaaaa taataaatgc tcaaaaaatt atccaaaaga 3840 ttttcaggat gaaaccatta ttgatgaggc tggctttaca atttatagac gacgaaatga 3900 tggacgacat attataaaaa atggaattcc attggacaac agatcggttg ttccttacaa 3960 catgaagctg cttaaaacat atcaagcaca cataaatgtt gagtggtgta ataaatcaaa 4020 tttgataaaa tatttattta aatatatcac aaagggtcaa gatcgtgcta gaatctattt 4080 tgagacaacc ggtaaaacaa caaatgcatc accaaatcat gaccttgcac cacaagatga 4140 gatattagaa tatatggatg gtaggttcct ttctacatgt gagtctcttc atcgactatt 4200 tgagtttgat atacattata gaatgccatc tgttgagcga ttagttgtac atttgcctgg 4260 caaaaattat gttagatatg agaaagggtc taatttacga gcagtcctaa agagccctgc 4320 tgcaaaaagt tcgatgctaa ctgaatggtt tgaagcgaat aaaaaatatc ctaaggctca 4380 ttcattgaca tactgcgaat ttccaaaaga acagacatgg gagccatcat ctagagtgtg 4440 gcgcccacga actcctgctc caaaaattgg tagaatttac tatgtgcatc caactgctgg 4500 tgagctttac tacttgcgaa tgatactgat gattgttaga ggtgcccaaa gttatgctga 4560 tgtgcgaaca tacaatggca ttgtttattc cacatataga gaggcctgtg aggcacaagg 4620 gctcctcgaa ggagacaatg aatggtacct gctttttgat gaggcaatac taactgcatc 4680 atcgcaacag cttagacaac tttttgtaac catccttctt tattgctcag ttatagatgt 4740 gcgctcatta tttgacaagt actggataca catgacagat gatattcata atagactaaa 4800 aaaagcgcta gataatcctc actgcataat tccacaggat cacttgctta accttctatt 4860 acatgagctt gctactgtat ttgcaaaaag tggtggtgac ataaaggatt ttaacttgcc 4920 acacccaacc tccattgcac atatcgctgg tggtaacaga ttgattgatg aggaacttac 4980 aattgatcca cttatgctaa gcatgcatgc agattctttg ataacacaat tgaatactga 5040 gcaaaaacat atttttgatg ttatatcttc tcgtgttgct cataatcagc ctggtttctt 5100 ctttgtgtgt ggccatgggg gaaccggcaa aacatttcta tggaatgcta tcattgcaaa 5160 acttagatca caaaataaaa ttgtgcttgc tgtagcgtca tcaagggtgg catctttact 5220 gctacctaga ggtaggacag ctcactcacg atttaaaata cccattgata ttgatgagac 5280 aagcatttgt aacattaaac gaggaagcat gcttgctgaa cttttaattg aagcttcgct 5340 tattatatgg gatgaggctc cgatgacaca taggcgatgt tttgaagcgt tggatcggac 5400 tttacgtgat atcctttctc aaacgtgtgc tacaaattct attatacctt ttggaggaaa 5460 acccgtcgtt ctaggtggtg atttcagaca gatattgcca gttgttccta aaggttcccg 5520 ccatgctata gtcaatgcat caatcacaaa ttcagatcta tggaaacatg taacagtctt 5580 aacgatgaat ataaatatga gactacttaa cacaaaccta gagcaaaagc aaaaagatga 5640 gctgcatgat tttagtaagt gggttttagc tattggtaat ggcacaatac ctatgaccac 5700 gaaggaaggt gaaagctatc catcatggat cgaaattcct catgacttac ttattataac 5760 tgatggtgat aaaatatctg ctattgtgaa tgaagtgtat tgtgattttt ttgcatcata 5820 catgaatcct gaatacttag cttctcgtgc aattgtttgt cctaacaatg ctacaataga 5880 tgaaataaat gactatgtta ttggtttagt accaagagaa gcaaggatat acctaagctg 5940 cgatacaata tcaaagtgcg ctgaacaaat tccagatttt gacttgctat atccacctga 6000 gtttcttaat tcaataaatg ctgcaaactt ccctacacat agacttatcc tcaaagaagg 6060 tgttgttgtc atgttgctca gaaatctaaa ccaatcaatt ggtctctgca atggaacaag 6120 actattaatt gttgctttag gtgatagaat tcttcaatgc attatactca ttggctcaaa 6180 cattggtgat actgtttaca tacctcgaat aacactgagt actactaaaa tgaaatggcc 6240 ttttacattg caaaggagac aattccctat tcgagtttgc tatgcaatga ccatcaataa 6300 aagtcaagga caaacactac aacgagttgg tgtgtacctt agaaaaccta tttttacaca 6360 tggccagttg tatgttacaa tttcaagagc tacaagtcga tcaggtctaa aaatattaat 6420 tgagaacgac gatggttcat gcggaaacca tacaaggaat attgtttaca gtgaaatact 6480 cactgctaca tttccagcgg tgcttttctt aacactgccc tatacattgt attcatcttt 6540 ttcttagcat catttagtaa tgcaaatcca ttccaattgc aggctccgcc gttgcatact 6600 tagctatttt ggcctaaaca gggacaaatt ttgtacaaac attttggaat aaatatatgt 6660 cttcagcagc tatcatgtgc tatatacccg ctgcaatatt cccctcttaa tattatatgt 6720 actgtctttg tcatcactgt tttctttcat tagcagtaac tatatagatt aatatgtatt 6780 aaaattgttt actacctatt gcagattcca aatggcgcac atactcatct cacagctgtc 6840 atgtggtgat tcaaacatac gaattaaggc aagagtttct aggctatggg actttcatga 6900 tctcaatgat gatagaaaaa ttgtgcacac tgatcttgtc ttactggatg aaacggtaac 6960 aatttaccta ctgcaatttt acactagaat tttctttatt gtattaatca ttctattgac 7020 aatattctct atatttaaaa aatatagggg aacagcatac atgctcaaat gtatcagcat 7080 gtaatagtga acttgaaacc tcttcttcaa gaaggaaaag tttactacat tgattcattc 7140 actgtcagat atgcaaatag gacatatagg ccagttgcac atagcctaat gatcctattc 7200 actaaatgga caactttaga agaatgtgtc gatgtgcctg ctgatttccc tgctataaca 7260 ttttcattga caccttttgg agatgttccc tctcttgtgg acaaaaacat cttttatgtt 7320 ggtaataacc tatccatacc atcttactac atatacacat cttttgcttc tttacaacat 7380 ttattaaatt tataccacat acaaacagat attatgggtg ttatcgctga aattggcaca 7440 acgtctactg tacgtcctca gtcaaggaac actgacagtt taaaaagaac actataaata 7500 tgtgatgcaa ggttagttcc atgaaactca gtccttacca ttctactttc caaatatttg 7560 ttttaacgaa cattcatact cacttttaca catgctttga atatctaata atttgttcca 7620 attataatta caccaatttt tctattaatc cacaacacta gcaattccac actacctctc 7680 acactttgtg gagagcgagc aactgctttc gatgctgaga atatctacaa tgctggccaa 7740 agacaacctc aggtggttgt gtttgttggc acgcttgtca agaactacaa aggcttaggt 7800 acatttgtac ctacaatttc gcttactatg ttgtgtataa tacaaaatta acaatatttc 7860 aaaattcctc tattcttcta cagggcttac actgactgga agctccccat gcaaatggta 7920 cattaacttt gaaatacctg aagtagtgga actgaaagaa aggtgatctt gttatcttcc 7980 aagtattcct gcaatctatt tacattgcac aatttgcaac tattaggatg acatccatta 8040 attctagaca caatatgttt gcatagcttt agcaccaact ttcagccaat caggtggaac 8100 gacgctcctc ctgcaggatt caaccaaagc aacccacaag aaaagacact taaagacatt 8160 cttgacctta atcctcataa acataaggtt tgtcttacct cttaattaac tatcaacaac 8220 attttcctgg attttacagt cgtattatca acagaatttt ttcactctta tcctttgcag 8280 gaagcacgct tcatagtaaa tgtggttgtt aaaagaatat gcaacgaaaa ctcctagtgg 8340 tacaattcat gtcacctatg ctacaaaacc tcaaaaccat atggctcagc ctacaagtgc 8400 accagttgtt cctatatagg aataccagat caaaggtcaa tagcgcagtt taattaattc 8460 tacatgtcta actatttatc actcacaaat ttctatattc atttaaattt acatgcaagt 8520 acaaattagt gctaattgct ggagatacta ctgcagatgc aacatttatt ctttttggaa 8580 aaactgcgca acgcatcata cgaaggccag tggaatctct gatcgaagaa aatccaccgg 8640 acagtgaatt cattccaagg gaaatcttag cacttgttga caatggtttt ctatggaatg 8700 tcagcttcac aaaggatatt aacagaagcg aagaaactct ccaggttaat agtgttatat 8760 cctctggtcc agcaaatcaa ccaccgctgc ttatgtcgcc aagtacttca cagccagcat 8820 cagcaattgt atcggcaagc tcaagcagtt ctctccagac agcaccaaca ccaagtgaaa 8880 caagcaccga atcgcaatta gccatcatac cagcacaggg cacttcaaca ccaacaaaat 8940 acactcctgc tgctgcaaca gatgagacac caactagcaa atcaagctcc ttagtattta 9000 ccaaaaaaag cattattgtc tcaggctact ctatgccatc tcacactgca aagacctcta 9060 ctgatactaa ggtatccttc ttaataccta ctcttgcact tcctctgcta taaacaaatt 9120 ttcctaaata attggagata cactctgacc tattgaccaa ctatgcaagg caaaaattgg 9180 cactcatcat gaagagaaga tctcacaaag tgcatcttta actacaattg ttccccgtga 9240 tacttcggat aaggtattca tgctctttct tttcataacc taatccatca atttctgaaa 9300 aaaaagtgct tcttctacaa ggcaaaggtc accgctgaat ctccagatga gtctccacag 9360 gcagatcctt cactggcgcc aaagagcaca cccaaaaaaa ggtctgtaaa gctttcagtt 9420 caaagttaca gtaatagaca tttctcgcac acattgtatt tgacatgtcc ttataatgaa 9480 cagaggtaga cctacagaaa ccaccacaat tgccaaaaaa ttgttcaagg atagtaccca 9540 gaagaaaccc actgacaggt taattctgaa taactcagct cacctctcca cacatacgca 9600 ttaattcttt agtaaacttc actaaatttc taaactcatc attcattcct acagtgaatg 9660 agacggatat atgtagtcca tcagcaagtc ttttgtgtat atgtacagaa cgaaccaccc 9720 aagctagaag tgtagaagca acaagttagc tgcaagccta gaggaggcta agaagcaagc 9780 ccttttgttc atgaccccta ggtcatgatt atcattgtaa ataagtaatg ttatgtttac 9840 cttccttgcc accttctgtg ctatgaaatg ttgttcgaac aactactact tatatggaac 9900 caatatagtt atggctgcgt actacctaaa catttctcct tcatgtcaaa gacaccatta 9960 tacgcaaacc ttttattttc tactatagct atatcgaacc atacaataca ctacatgata 10020 aatagcacaa attattctga caagcaaact ccattgtctc aatcctacgg catggaaaga 10080 tttttaaaat acactacact atctatattc ctatacattt aaatgatgaa aaaaacttcc 10140 agctccacaa gagcagcgcg cgaagcgcgc tctcgcccct ag 10182 // ID TNR8 repbase; DNA; ORY; 647 BP. XX AC AB052632; XX DT 10-JUL-2002 (Rel. 1, Created) DT 09-SEP-2002 (Rel. 1, Last updated, Version 3) XX DE Oryza glaberrima DNA, transposable element Tnr8-1. XX KW TNR8. XX OS Oryza glaberrima OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-647 RA Cheng C., Tsuchimoto S., Ohtsubo H. and Ohtsubo E.; RT "Tnr8, a foldback transposable elements from rice."; RL Genes Genet Syst 75(6), 327-333 (2000). XX DR GenBank; AB052632; Positions 1 647. XX CC FEATURES Location/Qualifiers CC source 1..647 CC /organism="Oryza glaberrima" CC /db_xref="taxon:4538" CC repeat_region 143..331 CC /rpt_type=inverted CC /rpt_type=terminal CC repeat_region 143..560 CC /rpt_family="Tnr8-1" CC repeat_region 372..560 CC /rpt_type=inverted CC /rpt_type=terminal CC Identical with the sequence TNR8-1. XX SQ Sequence 647 BP; 216 A; 103 C; 109 G; 219 T; 0 other; gagaaccaat gaaaagagtg aagtacagaa ggtaatcacg ttaagaaaaa tgatgtgaga 60 aacgcctagg agtcttccgg ctagctccac aaggtggtgg gctagacgac ctggattcga 120 agtttcaccc cttctaatta ttgagtaaat ttcacaaaac tacaggtatt ttgacgaaat 180 tatcacaaaa ctacagattt aaggagttgt atcataaaac tacacattta gcaccaaatt 240 tatcacaaaa ctgcagattt taggttaagt atcacaaaaa tacatattta atattgaact 300 tatcacaaaa ctacaacttt tggagtttaa atccctagca ccattgttat ggtgtagcta 360 taaacatgat taaattggtt ctaaacccgt agttttatga taatttagtt tctaaacgtg 420 tagttttgta acacttcatc ttaaatgtgt agttttgtga caaatttggt gctaaatgtg 480 tagttttgtg atacaactcc ttaattctgt agttttgtga tagtctagtc atagtatctg 540 tagttttgtg aaatttactc ctaattattt gatattaggt ccttccctaa tattcgcgtc 600 ttttttgtta agaaaaatga tgtaaccatc tataaggacc caatcca 647 // ID COPIA2-LTR_OS repbase; DNA; ORY; 962 BP. XX AC . XX DT 04-APR-2005 (Rel. 10.03, Created) DT 04-APR-2005 (Rel. 10.03, Last updated, Version 1) XX DE O. sativa Copia LTR retrotransposon - LTR consensus. XX KW Copia; LTR Retrotransposon; Transposable Element; COPIA2-LTR_OS; KW Interspersed repeat; reverse transcriptase. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-4 RA Gentles A. and Jurka J.; RT "Rice Gypsy LTR retrotransposon."; RL Repbase Reports 5(3), 48-48 (2005). XX DR [1] (Consensus) XX CC LTR corresponding to COPIA2-I_OS. XX SQ Sequence 962 BP; 206 A; 248 C; 248 G; 260 T; 0 other; tgttggaatt aatgaatggg ccttagccca ctcgaagatt aattctttgg aaaatcacaa 60 aagcccacct catgggatgg catgcatgtg gagtttagta ccaccttgct tattctagga 120 gagggggacc tccttaaaag ggaggatgcc ctcctagcca cttgaagcat gtgtggtgga 180 gagaagaggg gaaacacacg cgcgcgctcg ctcgcctcgc ctggcggcag ggcaggcggc 240 gcgcgtgcac gacgtacgcg tcgaatggtc cgaaaaattg gctcctcacc cttgcgcaga 300 tgcagcctcc ttttgcagtt ttgttttgct gcaaattcgg attcgttttt gttttggaaa 360 cgttccgaaa aatccggtgc gtgcaaacgg cgtggagtcc ggataagtta cgcgcgactt 420 atccggttcg gttacgcgca gtagagatcg tgcgggcgcc ctgatcaagc gacccttctc 480 tatataaacc gacccgccgt cttcacgcaa tatatgcgaa aatcaatcta gggtttgcct 540 cctactctgt actgcgccgt cgctcgtaga ctactccatc ccgctcgccg gcgtgcacca 600 gcgatcggga gagcaggtct ccggaacctc tgcctttgac gtcctgcacc gggagaaggc 660 ggcaataagg tttttgggaa gcgcttcgcg cgactgctcc ctgttcgttc gcgacggctc 720 gccttcctct tcgctcgcgt gtttcgtgcc ttcgtagaca cctgcgaaaa gtttcgacca 780 agcagccggt cttttcgtca cctcggtacg tgttcaatat gttgcgcata tttgatctgt 840 tcatgttata ctgcgtagtt tacatgtgta gatctaatga tgcgttcatg ctagttttca 900 tctgtaatgt catgatttat ttatggaata aattaaatca ttatatgcct ataatctcaa 960 ca 962 // ID TOURIST-IX repbase; DNA; ORY; 326 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE Rice non-autonomous DNA transposon TOURIST-IX. XX KW DNA transposon; non-autonomous; target site duplication; KW TOURIST-IX. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-326 RA Turcotte K., Srinivasan S. and Bureau T.; RT "Survey of transposable elements from rice genomic sequences."; RL Plant J 25(2), 169-179 (2001). XX DR [1] (Consensus) XX CC MITE, 3bp target site duplications.TOURIST superfamily. XX SQ Sequence 326 BP; 120 A; 43 C; 51 G; 112 T; 0 other; gggttggttt gatttgtggc ctaaataaac cttactaaat tttagtaaaa tttagaaata 60 acaaaatttg atcaggcaaa gttgtgtttg gattgaagcc aaaatagcct aagtttacta 120 ttgaaatgac ctattttctt aagcatatca aaaattttgg ttaaagttgt gtttggattg 180 aagttaaaat agcctaagtt cactattgaa atgacatatt ttcttaggca tgttaaaaat 240 tttggttcaa accaaataga cactaaacac tattgaagtt gaaaaatatt gataaaccta 300 atttatgcct caaactacac tagccc 326 // ID OSLINE1_1 repbase; DNA; ORY; 4159 BP. XX AC AE017112; XX DT 20-JUL-2005 (Rel. 10.07, Created) DT 20-JUL-2005 (Rel. 10.07, Last updated, Version 1) XX DE L1-like non-LTR retrotransposon, complete sequence. XX KW Non-LTR Retrotransposon; Transposable Element; L1; OSLINE1_1. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-4159 RA Jurka J.; RT "L1-like non-LTR retrotransposon from rice."; RL Repbase Reports 5(7), 183-183 (2005). XX DR Genbank; AE017112; Positions 83411 87569. XX CC This is a relatively young sequence flanked by 18 bp TSD CC (aaacaagcttgtgacttg). However, ORF can be further extended CC towards the 5'-end if putative TSDs are ignored. XX FH Key Location/Qualifiers FT CDS 104..4120 FT /product="OSLINE1_1_1p" FT /translation="MRDKQARNLMWSLGFSGSFAVSCEGLSGGLALFWTTA FT YTVSLRGFNSHFIDVLVSTEELPPWRISFVYGEPKRELRHFFWNLLRRLHD FT QWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQHFRSCLDDCGLIDLGFVG FT PKFTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVENVITTSSDHYAIS FT IDLSRRNHGQRRIPIQQGFRFEAAWLRAEDYREVVENSWRISSAGCVGLRG FT VWSVLQQVAVSLKDWSKASFGSVRRKILKMERKLKSLRQSPVNDVVIQEEK FT LIEQQLCELFEKEEIMARQRSRVDWLREGDRNTAFFHARASARRRTNRIKE FT LVRDDGSRCISQEGIKRMAEVFYENLFSSEPCDSMEEVLDAIPNKVGDFIN FT GELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHWGILEEHICNAVR FT GFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCNVLYKIASKVLAN FT RLKPFLPDIVSEFQSAFVPGRLITDSALVAYECLHTIRKQHNKNPFFALKI FT DMMKAYDRVEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKP FT VVPSRGIRQGDPISPYLFLLCTEGLSCLLHKKEVAGELQGIKNGRHGPPIS FT HLLFADDSIFFAKADSRNVQALKNTLRSYCSASGQKINLHKSSIFFGKRCP FT DAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATTNFFKFLPERIWKRVNGW FT TDRPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWWGFE FT DGKKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSLC FT SRVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELLAKGVRWGVGDGKTI FT KIFSDNWIPGFRPQLVTTLSPFPTDATVSCLMNEDARCWDGDLIRSLFPVD FT IAKEILQIPISRHGDADFASWPHDKLGLYSVRSAYNLARSEAFFADQSNSG FT RGMASRLLESQKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPS FT TDGCVFCNRDDTVEHVFLFCPFAAQIWEEIKGKCAVKLGRNGFSTMRQWIF FT DFLKRGSSHANTLLAVTFWHIWEARNNTKNNNGTVHPQRVVIKILSYVDMI FT LKHNTKTVDGQRGGNTQAIPRWQPPPASVWMINSDAAIFSSSRTMGVGALI FT RDNTGKCLVACSEMISDVVLPELAEALAIRRALGLAKEEGLEHIVMASDCL FT TVIRRIQTSGRDRSGVGCVIEDIKKLASTFVLCSFMHVNRLSNLAAHSLAR FT NAELSTCTVYRSVIPDYIRDILCDDVA" XX SQ Sequence 4159 BP; 1038 A; 876 C; 1126 G; 1119 T; 0 other; gggtcggaac tgtcgtggct tggggtcggc tgcgacagtg ggtgaacttc gctggttagt 60 gaagtctttg agaccctccc ttgtcttctt gtctgaaacg aagatgaggg acaaacaggc 120 aagaaatttg atgtggtcac ttggtttctc cggctccttt gctgtgagct gcgagggcct 180 tagtggaggc ttagccctgt tttggactac agcctacacg gtttctctta gggggttcaa 240 ctcccatttc attgatgtgc tggtctctac ggaggagttg cctccttggc gaatttcctt 300 tgtgtacggt gaacccaaac gtgagcttcg acattttttc tggaacctcc ttcgccggtt 360 gcatgatcag tggagggggc cgtggctgtg ttgtggcgac ttcaacgagg ttttatgcct 420 cgatgagcac ttggggatgc gagagagatc agagccacat atgcaacact tcagaagttg 480 cttggatgat tgtggtctta ttgacctagg atttgttggt cccaaattta catggtccaa 540 taagcaggat gctaacagta atagcaaggt ccggcttgat cgtgctgtcg caaatggcga 600 gttctcgaga tactttgagg actgcctggt ggaaaatgtg ataacaacat cctcagacca 660 ctacgccatc tctattgact tgtcgagaag gaaccacggt caaaggagaa ttcccattca 720 gcagggattc aggtttgagg cggcttggtt gcgggcggag gattacaggg aggtggtaga 780 aaattcttgg aggatctctt ctgctggatg cgtggggctg aggggagttt ggagtgtctt 840 gcaacaagtc gcagtgtctt tgaaggactg gagtaaggct tcctttgggt ctgtgcgcag 900 gaaaatcctc aagatggaga ggaagctgaa atccctgcga cagtcaccag ttaatgacgt 960 ggtgattcag gaagagaagt taattgagca acaactctgt gaacttttcg agaaagagga 1020 gattatggcg cgtcagaggt cccgagtgga ttggctccgt gaaggggacc gcaacactgc 1080 tttcttccat gccagggcat cggcgagaag gcggactaat agaatcaagg agctggttcg 1140 tgatgatggc tctagatgta tttcccaaga agggatcaag cgcatggctg aagttttcta 1200 tgagaatctg ttttcctcgg agccctgtga ttcaatggag gaagtcttgg atgctatccc 1260 aaataaagta ggcgacttta tcaatgggga attgggcaaa cagtacacta atgaggagat 1320 caagacagca ctgttccaaa tgggatcaac aaaggctccg gggccggatg gattcccagc 1380 tttgttctac caaacacatt ggggtatcct agaggaacac atctgtaatg cggtgagagg 1440 tttcttgtta ggagaggaga tcccggaagg tctttgtgac tcggttgttg tcctcattcc 1500 caaggtaaac aatgcgagtc acctctcaaa atttcgccca atcagtttat gcaatgtcct 1560 gtacaagatt gcttcaaaag ttcttgcgaa ccggctgaag ccttttctcc cagatattgt 1620 gtctgagttc caaagtgcct tcgtgccggg tcgcctcatc actgacagtg ccctagtggc 1680 atatgaatgt ttgcatacca tccgtaaaca acacaacaaa aatccttttt ttgcactcaa 1740 gattgatatg atgaaggcat atgatagagt tgagtgggct tatctttcgg gttgcttatc 1800 gaaacttggt ttttcccagg attggatcaa cactgtgatg cgttgtgtct cctcagtgag 1860 atacgccgtc aaaattaatg gagagctgac taagccggtg gtcccttcaa ggggcattcg 1920 acagggggac ccaatcagcc cctacctgtt ccttttgtgc acagaaggac tgtcatgttt 1980 gctacacaag aaggaggtag cgggtgagct acaaggaatt aaaaatggca ggcatggacc 2040 ccctatctcc cacttgttgt ttgcggatga tagcattttc tttgctaagg ctgacagcag 2100 gaatgtccaa gcactcaaaa acacgctgcg atcatattgc agtgcgtcgg gacagaaaat 2160 taacctgcac aaatcttcaa tcttttttgg caaacgatgt cctgatgcgg tcaagatatc 2220 ggtgaaaagc tgcttacaag tcgataatga agtcttgcaa gactcttacc ttgggatgcc 2280 tactgaaatt gggcttgcta ccacaaattt cttcaagttt ctgccagaaa gaatttggaa 2340 aagggttaat ggatggactg accggccgct gtcaagggcc ggtatggaga caatgctgaa 2400 agcagtggcc caagcaattc caaattatgt tatgagttgt ttccgcatcc ctgtctcaat 2460 ctgtgaaaag atgaagactt gtattgccga tcattggtgg ggctttgagg atggtaagaa 2520 aaaaatgcac tggaaatctt ggagctggct ttctactcct aaatttcttg ggggaatggg 2580 ctttagggag ttcactactt tcaaccaagc aatgttagga agacagtgct ggaggctgct 2640 tactgatcct gattccttgt gctcgagggt tttgaaggga agatacttcc ctaactcgtc 2700 cttctgggag gctgctcaac cgaaatcgcc gtctttcact tggcgaagct tgctgtttgg 2760 gagagaactg ctggcaaaag gagtgaggtg gggagtcggt gatgggaaaa ccatcaaaat 2820 cttttcagat aattggatac ctgggtttcg acctcaattg gtgacaacgc tttctccctt 2880 cccaacagat gccactgtta gctgcctgat gaacgaggat gccagatgtt gggatggaga 2940 tttgataaga tccctcttcc ctgtggacat tgctaaggag attctacaga ttcctattag 3000 tagacatggt gatgctgact tcgcttcttg gccacatgac aaactgggtt tatactctgt 3060 gcgttcggct tacaatctgg cgcgatcaga agctttcttt gctgatcaga gcaacagtgg 3120 gcgaggaatg gcgtcgagac tgcttgaaag ccaaaaggat tggaagggct tgtggaaaat 3180 caatgcgccg ggaaagatga aaattactct ctggcgtgct gctcatgaat gcttagcgac 3240 tgggtttcaa cttcgacgac ggcatatccc ctctactgat ggctgtgttt tttgcaacag 3300 agatgacaca gtggaacatg tcttcctgtt ctgccccttt gctgctcaaa tctgggagga 3360 aatcaagggt aagtgcgctg tcaaactagg aagaaatggg ttctcaacca tgaggcaatg 3420 gatctttgat ttcctgaaac ggggatccag ccatgcaaac acccttttgg ctgtcacctt 3480 ttggcacatc tgggaagcaa ggaacaatac aaagaacaac aatggcacag tgcaccccca 3540 acgtgttgtc atcaaaattt tgtcttatgt cgacatgatt ctaaagcaca atacgaagac 3600 ggtggatggc cagcggggtg gaaacactca agccatacct agatggcagc caccgccggc 3660 cagcgtatgg atgatcaatt ctgatgctgc gattttcagc tcgtccagga ccatgggggt 3720 cggggctttg attcgtgata atacagggaa atgcctggtt gcttgctcgg agatgatcag 3780 cgatgtggtg ctacctgagc ttgcagaagc gctggcaatt aggcgggcac tgggtctagc 3840 aaaggaagag ggcctggaac acattgtcat ggcatctgat tgtctcactg taatcagacg 3900 catccaaact tcaggaaggg atcgctcagg ggtgggatgc gtgattgaag atatcaagaa 3960 gttggcgtcc acctttgttt tatgctcttt tatgcatgtt aaccggttgt ccaatttggc 4020 ggctcattct ctagctcgga atgccgagct gtctacctgt actgtgtacc gttctgtaat 4080 accggattat atccgggaca tactttgtga tgatgttgct taatcaatga atggcatgcc 4140 gcctttgtct caaaaaaaa 4159 // ID SEVERIN-2 repbase; DNA; ORY; 1951 BP. XX AC . XX DT 13-SEP-2002 (Rel. 7.08, Created) DT 13-SEP-2002 (Rel. 7.08, Last updated, Version 1) XX DE Rice putative non-autonomous DNA transposon SEVERIN-2. XX KW DNA transposon; Transposable Element; Nonautonomous; KW target site duplication; SEVERIN-2. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-1951 RA Jiang N. and Wessler R.S.; RT "SEVERIN-2: a putative non-autonomous DNA transposon from Oryza RT sativa."; RL Repbase Reports 2(8), 44-44 (2002). XX DR [1] (Consensus) XX CC 3bp target site duplications. Insertion in STOWAWAY17_OS. XX SQ Sequence 1951 BP; 687 A; 199 C; 375 G; 690 T; 0 other; ctaggaaggt agcccgcgca ttcgcgcgag catgtatcgt aggctgcatt tgagatactc 60 gtaagtaata ggccgattgt gttaaaatgt cgtatttgtt atatagtaaa ctataggcat 120 atggatctta tatcgttggt ttgattataa acagagcaat agtcagatta gaaatcaaac 180 gtgaaactta taattataga ttatttatat tttagttaaa taggaacgta agaggaatga 240 aaagtgtaga gcttgagcca gagaggggaa ggagcgggtg tgtagtgatg agcgcgtgtg 300 gaggggattt ttttttttaa tttttctaag tgattaagtg aaagctaatt attaaatgta 360 attttcctaa gatttgcaaa aaatttttaa aagatgtgac atgctactta tcaagatata 420 tttttctaaa agtagattat atagctgaaa ataatgttaa taggtcatcg atctaggtga 480 aaactgttag ctagatgttt ttttctttta atatataaga ttttactaat ttttaaaatg 540 tgacacttgg taatttaaca tgtctctaaa aggtcataca tgatgacttt gtatttttct 600 aatttttatt atgtagaatg attaagatga cataatacat attgtcaatt ttttaatgtt 660 tcagtgttgt ttgcttgttg gtctatgttc aaattacgta ttttaaattt tacatagtaa 720 aatatgagta acataaatca acggttcaaa taaattaaaa ataggatgtt atttgggttg 780 tcaggtaaag aataggtggt agttcaaata acatatttta tttttatagt gaaatattgg 840 taatattgat tttaaattat ttagctgtct aattatgaaa caaccgttca aataaactaa 900 acaaaaacag atataaattt ttaatattat gattattttg ctatgtaact attatctttt 960 ttctaaattg ttagttaaaa atagatttgt catttataaa agcatgcatc agatcattaa 1020 tcatttatat atttaggcat gggacatgca atcaagaatc cacagccatt ctcgtgagat 1080 agaagtgaag aaattaatta ttaagtaata aaacaaaaat attaactacc atagagaaaa 1140 aaaggaaaga gatgaggaga agggattgag gggaaggaaa tgagaacgta cggtagtggt 1200 tgaggaatga tttttttatg agatccaatt gggccaccag ttcaagttat atattttttc 1260 taatttatta gagtgccacg tagtggctta ggagtgttta taggactctc acgtggcaat 1320 ttaagagtgt ttataggaag tttaatgaac ttttagtata taataataga tagatagata 1380 tattatatgt tgttaataag tatttaattt atttagatgg catgcaaact tgcaaaatgc 1440 accgtctata ccacaataac atattgctta tatatagcaa aatattggat gtaaaattgt 1500 caatttaatt ataaatagag caacgtttta atagaatata aattagctat gtacatttaa 1560 attatgatca acttaactcg ttttaaattt gataacataa aataattagg aagagaaaga 1620 gatagagata taaaagaata ggaagagaaa gagacaggga gagcgtacta cgttcttatg 1680 gttttttctt tttccggccc atggttatac gaagccacac gtatgtacgt atgttttttt 1740 ttctttttct ggcccacagc aaaggaatgg attactttct taaataatag atctaatcca 1800 atggtctaaa atatcgggtc caccaattta agtgaaaatc gatggtgaga ttatatagtg 1860 tcatgtggcg gtctaggagt gtttgtagga gtgacatgtg gcggattgag agcgtttgta 1920 ggaagtttaa tggactttta gtatataata g 1951 // ID KIDDOB repbase; DNA; ORY; 280 BP. XX AC . XX DT 10-JUL-2002 (Rel. 7.06, Created) DT 10-JUL-2002 (Rel. 7.06, Last updated, Version 1) XX DE Consensus sequence of MITE family Kiddo-subfamily B. XX KW Harbinger; DNA transposon; Transposable Element; MITE; KiddoB. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-280 RA Yang G. and Hall C.T.; RT "Consensus sequence of MITE family Kiddo-subfamily B."; RL Repbase Reports 1(4), 24-24 (2001). XX DR [1] (Consensus) XX CC KiddoB is a subfamily of MITE family Kiddo. The estimated number CC for Kiddo in rice genome is about 1200. The consensus TSD is TTA. XX SQ Sequence 280 BP; 65 A; 47 C; 75 G; 93 T; 0 other; ggggctgttt ggttgatggc cataagttgc cacactttgc catacttgag gttaggcaag 60 tttgaccatg ttaggtgagt gtttggttgg cttccacaag tgtggcaaga tttctctttt 120 gtaatctagg tcccacatgt aagtgactct aaaaagtgtg gcatggtttc attttgttgg 180 ctagagtgtg gcttggattt tgatggcctc acctttggca agtttagcta agaaagtatg 240 gtaaatctag gcaatgttag tatgtgaacc aaacagcccc 280 // ID HELITRON3_OS repbase; DNA; ORY; 12693 BP. XX AC AC078840; XX DT 10-JUL-2002 (Rel. 7.06, Created) DT 10-JUL-2002 (Rel. 7.06, Last updated, Version 1) XX DE HELITRON3_OS is a rolling-circle DNA transposon - a consensus DE sequence. XX KW Helitron; DNA transposon; Transposable Element; HELITRON class; KW HELITRON3_OS; helicase; replication protein A. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-12693 RA Kapitonov V.V. and Jurka J.; RT "HELITRON3_OS."; RL Direct Submission to Repbase Update (MAY-2001). XX DR GenBank; AC078840; Positions 34442 21413. XX CC HELITRON3_OS encodes the 1425-aa OSHEL3p and 420-aa OSRPA3Hp CC proteins. CC OSHEL3p is composed of the rolling-circle initiator and DNA CC helicase domains. CC OSHEL3p (positions 3077-7452): CC MQLLMLTNNAALCPERSYYGGPSHECPYCGAVFWYQERVKRDSAVSQRRIVYNLCCRGGKISLPELKYPP CC DMLAKLLKFDGDAQSKRFLRQIRSYNSLFAFTSLGADVEKSINNGTAPYVFKINGVVHHRIGSLLPQRGA CC KPKFAQLYIYDTENETANRINIFDRENSNDEPDPSIVTRLGAMLDQHNDLVKSFRYARDRLNEHGNEQIA CC LRLLGCNAKDEVQYNLPTSGEIAGIIVGDSSNDAYTYDVVVQSSDNRLRQVSALHPSYMALQYPLFFPYG CC ERGFHLGIKYTDFPSIAGTSRRYVTMLEYYRYRFHYRLNKPNPYTCCGRLSDSICVDAYSTVEGSRLKFI CC HDHQPELRSECVQGIADAIDHGLESGDSVGKKYVLPSSFTGGRRYMVQNYQDAMAVCRVFGSPDLFVTFT CC CNSKWQEIIRYXGGKDLRSCAGRXTSSRHVFSYIILSCXYCSCXYPCFHVVLYTVEFQKRGLPHIHCIMW CC RAAADAEFSATAVDSLICAEIPDVFSDPLGYALVDEFMIHGPCGDKNKSCVCMKNGHCSKHFPKGFQEET CC TMDEFGFTVYRRRNDGRYVVKNGIKLDNRWVVPYNMKLLKKYQAHINVESCNKSNMIKYLFKYITKGGDR CC TKLYFETTGNTPNKTVDGTVLPPNEIDEYINARFLSTCEAFWRAFEFDIHYRVPAVERLPIHLPNMNFVQ CC YKKGTDLKKLLDSPAAKKTMLTEWFECNKKHPNARTLTYCDFPKQWTWDNSARCWRPRTPVEKIGRIYYV CC SPAAGELYYLRMLLMTVKGAKSYADVRTFEGTVYPTFRQACESRGLLENDNDWHLLFDEAIVSASSLQLR CC QLFVTVVMFCSVGNVRSLFDKYWLYFTDDIQHRLRTALSNPAYVVPHDRLLSLLIKELHSAFANSGGNID CC DYDLPRSTIHSDDEFGNRMVNEELALDTAALAAHASLMIPXLNSEQQKIFDTIVSRVSESRPGFFFVYGH CC GGTGKTFLWNVLISKIRSEGNIVLAVASSGVASLLLPRGRTAHSRFKIPIDIDENSICSIKRGTMLAELI CC QKTSLIIWDEAPMTHRRCFEALDRTLRDLLSEHNPSNSVLPFGGKVVVLGGDFRQILPVIKKGTHNSIVD CC ASITNSPLWQHVVLLKLTVNMRLFQSGLSEGHRHDLEQFARWVLALGDGMLPVSKRIDESEATWIDIPDD CC LLIRASDDKIYSIDTQIRAIVCPNNLTVDEINDYMVAMIPGEMKEYLSCDTISKTSEHIPDFDILYPTEF CC LNSINANNFPTHRLALKKGATVMLLRNLNQSLGLCNGTRLLVLSLGHRLLECVILTGSNVGERAFIPRIV CC LSTTSSKWPFVLQRRQFPVRVCYAMTINKSQGQTLSRVGVYLKKAVFTHGQLYVAVSRSTSRDGLRILIE CC DDDGACSSKTRNVVYHEVLEAVRLM CC OSRPA3Hp is similar to the RPA70 subunit of the replication CC protein A. CC OSRPA1H3p (positions 7766-10012): CC MAYSMLSKLELCADNPRICVRVSRLWEFANPNDETQLLHLGLVLIDQEGTSIAAQIYPPC CC DLQFREIITEGKVYYLEYYRVREWSRRYRPVNNSLSICFTRWTKVEQVADPAADFPLYTY CC SLTPYGGLRQRVDRKEEFTGDISLSGNSACKWYINVNTPEVNSFKESIQGKYEPIKMIEL CC PAVGAVRTGAEQKSIAQIKDLNPFMFRKNEFMVTVVIKKIDTESSWWYPACDSCKRTAKP CC YGKSYRCGNTSCPAVVSASPRFKLSLIAGDDTGDTKFVLFGRTAQRIIGRPVEMLIQNNP CC AGIEFIPKEITDLLEKEFTWNVAFTENTLSSSTVSFQVNLIVRGPDNPCSSALQSPSASQ CC ASSAVPSQALSPGLSHGLSIGQCSAAADPSIGFADPIAGIDSPLAASIKHKKPETEYQSK. XX SQ Sequence 12693 BP; 3185 A; 2874 C; 2851 G; 3783 T; 0 other; tcggggaaat taaagacaac cgcgaagtgc tcgcaccaca gcgctccggg cgtttttggg 60 ccggcgtgtt cgcacctgct tgtgtccacg tcgccctatt tggtgtggct gtgttgtgtg 120 aacccataag cgtactcgca ccgtcactgc tatgtggggc agggagggat gtgggttgct 180 gttcatggtc ctatcaatgc tttcgttgcc tgtgcgctta gtccattgcc tcaggtttct 240 ggacctgtct ctgcgtgccc cacttgcagc ttctttggtt cacagtgcac atggagtaca 300 gggtttttaa caccctgaca tgcttgacca atggtgcagt ttgcacggct ccctaacggc 360 atgactctgc tcctgcctac ctgccatgcg tgctccgccg aatgcttata tgcagcacct 420 ggtctaccgt gctccaggta gagcccttcg gcctacggtg tgcatgcgtg atggaccagg 480 cccacggcta ttttggtctg ctacatcgct ttgatccgct gtgtattccg ttgggcttgc 540 attgaaaaaa agtcaccaca caacgtctcc tctgtaaacc ctctgcgggt gggctcgctg 600 ttttgcgctg tcccacatgc catatgctct ggtgcgccaa atagattgcc tccctgctgc 660 acggcgccaa atagattgcc tccctgctgc gccatgtttt aatgcccacc gcttgcaccg 720 gcccgctgtc aggtgaggtc caatcaacgt cggcgtccgc cataccagcg tgcgtgatca 780 tcaatggggc aatgtcctgt tttgccttca gcttcttcct ccccattgtg agagatttgt 840 ttgtctcctc cgcttttgct ttgctctgct ctgctgtttc cctctcctgc tgacttcttc 900 agccatgccg acagcttggt gggttgctac ctccatacct agcagatgtc ttcctcatgc 960 gatttggttg gttggtttga cgctacacgg ttggtgtgca ggtctgcgtg tgggatttcc 1020 gccagcattg ctgcgtagga tttggtgttc tcgcactggt tagttgcttc cttgatgtgc 1080 tgtgtcctgg atggtcgatt cttcatcctt tcattttgct tgctgtgggc aggggcaggg 1140 gaggcggtcg cattgctcta ccgcctgttg gtcgctggca gttcacggtc gagggcaagt 1200 tgatctcctt ccatcagagt gtgcctgcac cggctcgaag aggttgctgc tcttttcttc 1260 gctgattttc cccccgcttt tcctttctat ttgttcttat gtttgccctt gccttttcgt 1320 ctgggttctt ttctcggtgg cctctgttgt gtctgccatg ctgctatgtt gtgtgcgtga 1380 gaaaataatg ccggttggtg cctcacagat tactgtgcat gggcccgtat aggcccgcgt 1440 accagtactg gctgcctccc tcttcttata taacccaaac ttctctgggc acttgcctct 1500 tgcgtagagg ttgctcttgc tggtttttga ccaaccttcc agatcttcct ttctaccact 1560 cacctaggcc ccatctagca gcgccatggt taatgtgggg gtctcatttg tctctctgtt 1620 gaatgccgtt gcttggcatt gtcagctccc gctggtgtcc tatctttggg aaatagatgg 1680 gaatggcatg ctgctagcag gtgttgagct tgcgctccca tcggaagaca tggccggcca 1740 gattgttagc aagttctttt gggtctgcgc gtctactcaa acaagtgact cgcatgaaat 1800 ggtcgcgcat caggctgtta ggttcttgca ggctaggtac ggctttattg tccacgatta 1860 caatcttcag atgttacttt cctaccggag aatagcagcg tctacagtag atgcagctgt 1920 tacagcctca gcgtgccttg ctaggttcca gtcacgatat gctccaacag atctatcgtg 1980 tgctggtgtt gtccagcgat gtaacactat atggttcaat tttcttcatg aggaccacat 2040 gtttagcaac atgcacaacc tttaggggta ttttgtttcc tttagagggt gttagtgttt 2100 ttcgctactg agtttgtctg caatgagagt gtgcctttat gatgttatta cataatgttt 2160 tgtattgtct gctttcgatc ttatgttctt cttttgtgca ttgctttcgg ttagttcggt 2220 gctctctttc ttacgactga tctgacgacg aaaaaatagc tcccctttta tccgctgtgt 2280 tgttgcctct gagctatgac gagtaatccc tctccgcgag ttcaacgggc ccgtgagagc 2340 cgtttgcgac gccgtgcttc tattggccag ggtttgtgct tcttaacttg atttagaggc 2400 gcttcttggg ttagatcgat aagtttgatc gaccagatag ctggggttta tagcattttt 2460 gcaggctcct ctgttcggcg gcgtaaatcc tgtggtctct aggggaccaa atggttcgcc 2520 aaatgctgga atagatgtgg agcagtcggt tcctgaacaa gctctggctt ctgatgttca 2580 tgtgcggtct caggttgcct ttgttgctgg cacaggtcct ttgacccaga attccataac 2640 caccgctagc attaagttga gcgatagttg tcccatgggc tccataactc ctgacaatgt 2700 cgattatgct tagctccttt gttctcctca ttgcgattag gaaagagaac cctactagat 2760 gtgccgcgcc acactgctgc agcaaacagg gaaaaacgac gcctcaagag gtctggttct 2820 cagccagacc acctggtaag aaaaatccta gaaggtatgg ttaaatatac cttttgtttc 2880 ccctgtgctc gcttagtgtg gcagttatgt ctgctaacca tttttgcttt caccgatgct 2940 tgcttcctgg gatttcgaat gcataggtcc cgttcctaca gtggatgaca tcttgccttt 3000 acctaaggat tacattgcgt ccttaaaagg tttgctcggt gtctactgtc ttacatagct 3060 tcctttctgt caatcaatgc agttgttaat gcttacaaac aatgcagctt tgtgcccaga 3120 gcgatcatac tatggtggcc cttcgcatga gtgtccttat tgtggtgccg ttttttggta 3180 ccaggagagg gtaaagagag atagtgctgt ttctcagaga aggattgtct ataatctctg 3240 ctgtaggggt ggtaagatca gcctgcctga actaaaatac ccaccggata tgttagcgaa 3300 gcttctgaaa tttgatggtg atgcacaatc aaagcgtttc ttacgccaaa ttcgatctta 3360 caactcgctt tttgcattca cttcattagg ggctgatgta gaaaagtcaa ttaacaatgg 3420 aaccgcacca tatgtcttta aaattaacgg cgttgtgcac catcgtattg gcagcctctt 3480 gcctcagcgt ggtgcgaagc ccaagtttgc tcagctatac atatatgaca ccgagaatga 3540 aaccgctaat cgaattaaca ttttcgatag agaaaactca aacgatgagc ctgacccatc 3600 aattgttaca agacttggcg ctatgctcga ccaacacaat gatctggtca aatcgtttcg 3660 ctatgctaga gatcgtttaa acgagcatgg taatgagcag attgcactta gactgcttgg 3720 gtgcaatgct aaagatgaag tccaatataa cctgccaacg agtggtgaga tcgcaggaat 3780 aatagtgggc gacagctcaa acgatgcgta cacgtatgat gtggttgtcc agtcttcgga 3840 taataggctg agacaagtct ctgctttgca tccttcctac atggctttgc aatatccttt 3900 gtttttcccc tacggtgaac gagggttcca cctcggtata aagtacactg atttcccgag 3960 tattgctgga acatcacggc gatacgtgac aatgcttgaa tactatcgat atcgctttca 4020 ttataggcta aacaaaccga atccatatac atgttgtggc cgtcttagtg actccatatg 4080 tgtggatgca tactcaactg ttgagggatc gaggctgaaa tttatacatg accaccaacc 4140 tgagttacgt tcagagtgtg ttcaagggat tgccgatgcc attgaccatg gcctcgaatc 4200 tggtgattct gttggcaaaa agtacgtctt gccatcaagt ttcactggag gtcgtcgcta 4260 catggtccag aattaccagg acgcaatggc tgtttgccgc gtgttcggtt cgcccgacct 4320 attcgtgacc ttcacgtgca actccaaatg gcaagagata tacgatgccc ttgtgtttga 4380 accaggccag gtgccggtct gacatgattg tacgagtctt tagcatgaag gtcgatgaat 4440 tcatatccga tattaaggag ggaaggacct tcggtcctgt gctggcaggt agacgtcatc 4500 tagacatgtt ttttcctata tcattttgtc atgttagtac tgttcctgct gatatccatg 4560 cttccatgta gtgttgtata ccgtggaatt ccaaaagcgt ggtctcccgc acatacactg 4620 tattatgtgg cgtgcagcag ctgacgccga atttagtgct accgctgtgg acagtttaat 4680 ttgtgctgaa attcctgatg tgtttagtga tcctttgggc tatgccttag tcgatgagtt 4740 tatgatccat ggcccttgtg gtgacaagaa taaatcatgt gtctgtatga aaaatgggca 4800 ttgctccaag catttcccta aaggcttcca agaagagacg accatggatg agtttggctt 4860 tactgtatat aggcgtcgaa atgatggacg atatgtggtt aagaatggaa ttaaacttga 4920 caatcgatgg gtcgttccat acaacatgaa attactgaaa aaataccaag cgcacattaa 4980 cgttgaatca tgcaacaaat ccaacatgat aaaatacctt ttcaagtaca taacaaaggg 5040 tggtgataga accaaactat actttgaaac aactggcaac acaccaaaca agactgttga 5100 tggtactgtt ttgccaccaa atgagattga tgagtacatc aatgctaggt tcctctcaac 5160 ctgtgaagcc ttttggcgtg ctttcgagtt tgacatacac tatagagttc ctgctgtgga 5220 acggttgcct attcatcttc caaatatgaa ttttgttcag tacaaaaaag gaaccgacct 5280 aaaaaaattg cttgacagtc ctgctgcaaa aaaaacaatg ctaacagagt ggttcgagtg 5340 taataaaaag catccaaatg cacgaacact gacctattgt gatttcccaa aacaatggac 5400 ctgggacaat agcgcccgct gttggcgccc aaggacacca gtcgaaaaaa ttggtagaat 5460 ttattatgtc agcccagccg ctggagagct atactacctg cgcatgctgt tgatgacagt 5520 taaaggcgca aaaagctatg ctgatgttcg gacctttgaa gggactgttt acccaacttt 5580 taggcaggca tgtgagtcta gaggccttct tgagaatgat aacgattggc atttgttgtt 5640 tgatgaggcg atagtttctg cgtcgtccct gcagttaagg caactatttg tgactgttgt 5700 aatgttctgc tctgttggaa acgtccgatc attgtttgat aagtattggt tatactttac 5760 tgatgacatt cagcatcgcc ttagaacagc gctctcaaac cctgcttacg ttgttccaca 5820 tgataggttg ctgtctcttt tgattaaaga attacactct gcatttgcaa acagcggtgg 5880 taacatagat gactatgacc tcccgcgatc aacgatacat tcagatgatg aatttggaaa 5940 tagaatggtc aacgaagaat tggctcttga tactgctgcc ttggctgctc atgccagcct 6000 gatgatacca tgactaaact ctgaacaaca aaaaattttt gacacaatag ttagccgtgt 6060 tagtgagtcg aggcctggat ttttcttcgt gtatggccat ggtggcactg gcaaaacgtt 6120 tttgtggaac gtgctcattt ctaagataag gtctgaggga aatattgttc ttgcagttgc 6180 ttcctcagga gtcgcttcgc ttcttctccc tagagggcgc actgcccatt ctaggttcaa 6240 aataccgatt gatatagacg aaaatagcat atgcagtata aaaagaggaa caatgcttgc 6300 agaacttatt cagaaaacat cccttattat atgggatgaa gctcccatga cacatagacg 6360 atgctttgag gccttagacc gaacgttgcg agatttgctt tcagaacata acccttcaaa 6420 tagtgtgctg ccatttggtg ggaaagttgt tgtcctaggt ggtgatttca ggcagatatt 6480 accggttatt aaaaagggga cacacaattc tatagttgac gcatctataa caaattcacc 6540 gctttggcaa catgttgtcc ttcttaaact cactgttaac atgaggctct tccagtccgg 6600 tctttctgag ggacaccgtc atgatcttga acaatttgct cgatgggtct tagcgcttgg 6660 ggatggtatg ctaccggtat caaaaaggat cgatgagtct gaggcgacct ggattgatat 6720 ccctgatgat ctactaatta gagcttcgga tgacaaaata tattcaatag atacacagat 6780 tcttcttacc tagcatcgcg tgctattgtc tgcccaaata acttaacagt tgacgagata 6840 aatgactaca tggttgctat gatacctggt gaaatgaaag agtaccttag ttgtgacact 6900 atttcaaaaa catccgaaca catacctgac ttcgacattt tgtacccaac tgaattttta 6960 aactccatca atgccaacaa cttcccgacg cataggcttg cactgaaaaa aggcgcaaca 7020 gtaatgttgt tgcggaatct aaatcaatcc cttggcttgt gcaatggaac tagattgttg 7080 gtcctttctc tcgggcatcg tctcttagaa tgtgtgatct tgactggatc aaacgttggc 7140 gaaagagcat tcataccaag aattgtgctc agcactacga gttctaagtg gccttttgta 7200 cttcaaagaa ggcaattccc tgtacgtgtg tgctatgcca tgacaattaa caaaagccaa 7260 ggacagacac tttcaagggt tggggtctac cttaaaaaag cagttttcac acatggccaa 7320 ttgtatgttg ctgtatctag atcgacctct agagatggcc ttaggatcct tattgaggac 7380 gacgatggtg cgtgtagttc taagactaga aacgtggtat accatgaggt gctggaggca 7440 gtcagattaa tggtatattc tcgattgttg atttccacgt gacacgaacc atgtttatcc 7500 agagtgctgg gatatatttt aaggtgctaa tttcatttta aaatgtagga ttctggtacc 7560 tagaaccaag tgacaacgtc catgtttgct gctgctctgt tgttcttggt ggctatttta 7620 tcagctctgt tatcgtgttc ttgtgaaaaa atgtttctct atgttctcag gatcttttgc 7680 tgtaagcttt gttctctgtt tacatgcagc tcctacttct taggagggcc ttcacactaa 7740 tgagaaactt ttaccttgct ttcagatggc ctacagcatg ctctctaagc ttgagttatg 7800 tgctgacaac ccacgcatct gtgttcgtgt ttcaaggcta tgggagttcg ctaatccaaa 7860 tgatgagaca caattgctcc accttggttt ggttttgatt gatcaggagg tcagttcttc 7920 agagcactta gcacccagct ttctgtagaa acagattgct ttactaatgt gcttttgaaa 7980 cagggcacta gcattgcagc acagatatac cctccctgtg atctgcagtt cagagaaatc 8040 atcactgaag gcaaagtgta ctatcttgag tactaccgtg tgagggaatg gagcaggcga 8100 tacaggccag tcaacaacag cctgtcaatt tgttttacaa ggtggactaa agttgaacag 8160 gttgcagatc cggcagctga tttccctttg tacacttact cactcacacc atatggtgga 8220 ctccgtcagc gtgtcgacag gaaagaagaa ttcacaggta ttctcattgt gttttgggta 8280 ataaaagcat gacgtacaat gatataatgt ccttcagatc actgacaagt tgcttcctct 8340 tattgtcaat acaaaaaaaa gatgtcattg gcattattac tgaggtaaca tctgttacga 8400 cagttcagac gcgcatccga gatggtgata gcctgaagag aagcatttac atacgtgata 8460 ctaagttagc ctcaaacctt atctattatc ttcattcatg tgaattgcat ttccctagat 8520 ttgttgatct gtttatgtat tatgtcagtt gactaaccag ctatctccag ctgtactgac 8580 tttttttctt caacactaca caaatcatac ccatagaaac tatatgctct aacataatca 8640 ccgtgtccaa caaaccacac atgcgagatt tttatgcact tttttactac atccattcca 8700 tagcgataca atcttaaatg tggcgctatg gggagaacgt gctacaagct ttcctgtcga 8760 tgaagtggtt gctgctggtc agaaagaacc acagatagcg atatttgtgg gcactcttgt 8820 gaggggctat ggtgagtggg ctctcaatgt gtccaaatgt gtttttagac tatgactcca 8880 attgttttac atatcgtgca ctaacacatt tctttcatag gcgacatatc tctatcaggc 8940 aactcagctt gcaaatggta cattaatgtg aacactcctg aggtcaactc cttcaaagaa 9000 aggtttgttc taactttcat ataattcgag tatatttggt ccactctttt acagattccc 9060 atctaggctc atctgtgcgt tttttacagc atacagggaa aatatgaacc tatcaaaatg 9120 attgagctcc cagctgttgg agctgttcgt actggcgccg aacaaaagtc aattgcccag 9180 atcaaggacc tcaacccttt tatgtttagg gtatgttata tgttctgtgt atttaacttt 9240 gctatcttat agatccatga caataagctc cagctaacat ataatccttt ttacacctag 9300 aaaaatgaat tcatggttac tgtcgtcatt aagaagatcg acacagaatc atcctggtgg 9360 taccctgcat gtgatagctg caaaagaaca gcaaaaccat atggaaagtc atacaggtgt 9420 ggcaatacat cctgccctgc tgtggtgtca gcatcaccta ggtgagtact gcatgtcatg 9480 agaactggat acctaaaacc aatttagagt ctaaccatgt ttggatccct gcaggttcaa 9540 actcagcctc attgcaggag acgacacagg tgacactaag tttgtgctct ttgggcgcac 9600 agcacaacgc attatcggtc gaccagtcga gatgctgata cagaacaacc ctgctggcat 9660 tgagttcata ccaaaggaaa ttacagatct tcttgagaag gagtttactt ggaatgttgc 9720 cttcactgaa aacaccctgt cttccagcac tgtttcgttc caagtgaatt tgatcgttcg 9780 aggtcctgac aatccctgtt cttcagcctt gcaatcccca tctgcatctc aggcatcgtc 9840 tgcagtgcct tctcaggctt tatcaccagg gctatcacat ggtctctcta ttgggcagtg 9900 ttcggcagcg gctgatccat ctattggatt tgctgatcca atagctggaa tagacagccc 9960 attagccgct tcaatcaagc acaagaaacc ggagactgag tatcagtcaa aacctccagc 10020 tgagcttcct caggaagaag cagaggtaat cgagcaggca tagtctgaat ttttgtcata 10080 aagcatttct atgttaaaag ttaacattgc taatattgtc gtaatatata taggatgatg 10140 acaaccttcc actaagccag atagttgctg acgatgctac taaacatagc acgtccaagt 10200 cctacaagaa aaggtaccaa gctccataaa catgtttatg ttacacataa ggagcaatag 10260 tttgttctat atgttctaac tgaatttgcc aaacagggct aggccatctc ccggtatagg 10320 agctgctaag aagttgttca agaataatgg tgatggtgct gctgatggca ggtaaactca 10380 gcctgtacaa cctgtgctaa aagaagttcg tagaatgtat gactaagcta ttttgcactt 10440 acatttcagc ggagacaaca atgcctgatg cattgtggga atatgaagct tttgcttgat 10500 acagttgcag gagagtacac cgtcaggttc agtggcctta catgctgcct ccagcttcgc 10560 tacggcttca ctgggcaatg tgttatgtac ctatgcaaac tgtgctattg tgttgctcat 10620 tgtgtgttta tgagcataat acttttgtaa cggaccacga aaacatctac ccatgcgttc 10680 tgtagttagc taggattcta tgttatcata gatgcactgt gataaccatg aatgctggct 10740 gttcattgaa cgttctatgc tggacctcct aagattaatt agactgttct aatgttataa 10800 tccagagcaa tcgaactcga tgttgattct atggttgctt ggttttagaa tccctccata 10860 cagctgttta ctgaaacaac aatgcgttcc atgctcacgg cacggcgcgt acaacgtatc 10920 acattgtgtc gtggtactga tttgtactac aaatacatct atttaacctt caacagccag 10980 cgctccacgc aaaatgtgca gcccatgcct gcacactgac tcccttttta aagagtgaca 11040 tgccagccta cacagctagc tactcctatg aagggacaac acgacctgct aaaaacgcat 11100 cccacactct acacttattt catttcagct catcctcttc ttccaccaca gctcagcact 11160 cctcgccgag tctcacagat tgaatctgaa gaactcctgc tcgaggaaga acaactcttt 11220 tcctaccatc gtttctacgg gtaagggtgc tcttctctac ctctgttcca gggtatctct 11280 ctatgccttg ctatgctatg cagtctatac gaaatgcagc cttctgtttc gacgtgattg 11340 cattgcctga tgcttcggta ataatacatc cggttctatt ttcctagccg cgcatgctgc 11400 ctgcgcttgg cgataggaac aagagctatt tttagaaaat aaaacatata gcaagaaaaa 11460 acctagcaaa acaattaatc cggtctaata ctattatgga tgttctttat tagggatgca 11520 gtttgattgg agcgctgagc taggcgtggg gcagccacaa cgcccttctt cctatggaac 11580 caatcgtcca ttactagcaa caaaattctc taggcgcaag gagatatcgc atatgctagc 11640 tgacatcata tacacaagag ctgttgttgt taaggtgtct ggagctggaa atccgaccac 11700 aacaagaata tcagcgatga taagcgccgt ctgcaggtgt caaattgatg atttcgcatt 11760 gctccctttc cgcccaaaga tgttcattgc catcttcatg gatgccgatc tgcaggaaga 11820 actgtctgaa agagctttca aaaaggtatc gttcaccttc aaggcaactc gcctcacatt 11880 tgagcctttc aagatgaatc ttggtagcac tgtaaatcca ctgtgccagc gggttatact 11940 tgcgctagaa ggcgtgccac cagaatcatg gaacaaagaa gctatatcag agctcatgga 12000 cagttgttgt tttgtagagg agttgtatgg agagcaccat atccaagaac tctcaatttt 12060 taagttagct gcctggacaa cagattgtga ccttataccc aaggtgataa gctggaacat 12120 tgagactaaa gaaggtcgtc gaggatcagc aaacattagt tggatgcaca atgcaactct 12180 gtcagttgtg ctggttcata tagagaagct gttcgactac actgacgaag acagtgggag 12240 tgatagcgat ggagaagttc ttagggaata tgagcagcaa aggccccgtg tccctgttgt 12300 caaaacattt agctgggtgc ccttgaagat tgatctaaac aacggaccag ttgaaggcgg 12360 tacaccagcc atagctccac gccgtcttcc tcttgaagtt cgcaggcgtt gtcgcctacc 12420 ttaattacat aaaacactgc cctctgttat gtatgcttta aagcctaaca ttttcacctg 12480 cctctccatg cttatggatc atgcgaacag ctgcttagtg ttttctctac gtgttctgtc 12540 agtttttgtt ttcctaacaa ttagcctgct gagcaaggcc taaacttcca gttcagctaa 12600 aatatgattc gtatattcct cttagcaatt tactcctttt acatcactga atatgagctg 12660 ataaggcgcc gcgaagcgcg ccgcaagttc tag 12693 // ID SZ-5LIKE repbase; DNA; ORY; 1064 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE Rice long terminal repeat SZ-5LIKE. XX KW Long terminal repeat; retrotransposon; SZ-5LIKE. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-1064 RA Jiang N. and Wessler R.S.; RT "SZ-5LIKE: LTR from Oryza sativa."; RL Repbase Reports 2(7), 113-113 (2002). XX DR [1] (Consensus) XX SQ Sequence 1064 BP; 350 A; 274 C; 160 G; 280 T; 0 other; tgtatgatta aacacaagta atcaagtcta ctagagaaag agtgaatggt aggaacacca 60 aaaatcgaac ttttagtgca aataaaggtt accctcgaat ctaatggaga tgcaccagtc 120 aaacttccag ataaaagcta gttaggccga accctagccg ccggttagac cgcagtgatg 180 ccatcggtta gaccgcctac cacccatcgg tcttcccgct agtctgaccg ctcctatgcc 240 gttggttaat taaaccgtcg gggttcagag aaaaacacac caaagatgct cttgaagatg 300 gatcaacttt attgcatctc ataaagtgca tctaaagcat tcatctctaa actcacgaac 360 tagaattcaa gcgtcgaagc gaaacctatt ttttttctct cccaaaaagt tgatatagat 420 gtatacttct agcctcaacc cctgtactat ttatactcaa aacatggttg tccctagcca 480 cgaatccaac tagaactagg actcctaatc atataggacc ccaacaaaat aactagggaa 540 ataacatccc catacaactc tatactctaa tcttcccaaa cttggactcc aattaaaatt 600 tgactccact ttccatatga aaacattcac ttccacgtac attattctct atcctgagca 660 tccttgcatg atatccttga tcgtctgaac ttcaactttt cccaagctta gtctcgatcc 720 atcattggct atactctcat tgcctcaagc aacgcatgca catgaacaac aaagaaactc 780 tacatccaag tgcaagttcg caccaacttg actcatatca gcatacaata gtatcacata 840 tgaatagaaa accgtctaaa agttatataa tgaagcaatc tataatttac acgaaacaac 900 ccgaaaccga ctccctctta gagtctgtcg gtatgatcgt cggtcaaccc ggtctaacga 960 gtggtctccc agtgccgacc gcattgttca ccgaccgaaa acactataca tggtattttc 1020 aacaaacact catctttaaa aattaatcat cacatgattt caca 1064 // ID MIDWAY repbase; DNA; ORY; 985 BP. XX AC . XX DT 09-SEP-2002 (Rel. 7.08, Created) DT 09-SEP-2002 (Rel. 7.08, Last updated, Version 1) XX DE Rice putative non-autonomous DNA transposon MIDWAY. XX KW DNA transposon; Transposable Element; Nonautonomous; KW target site duplication; MIDWAY. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RA Jiang N. and Wessler R.S.; RT "Insertion preference of maize and rice miniature inverted repeat RT transposable elements as revealed by the analysis of nested RT elements."; RL Plant Cell 13(11), 2553-2564 (2001). XX RN [2] RP 1-985 RA Jiang N. and Wessler R.S.; RT "MIDWAY: a nputative on-autonomous DNA transposon from Oryza RT sativa."; RL Direct Submission to Repbase Update (28-NOV-2001). XX DR [1] (Consensus) XX CC 8bp target site duplications. Insertion in STOWAWAY1_OS. XX SQ Sequence 985 BP; 362 A; 150 C; 180 G; 293 T; 0 other; ctgtggcgga tccaggattt atgtgatggg tattcggaat tctaaaatag cagatatatc 60 gataccgatt gacacattga atgtacgata cattattttg atgcataatc tttactacga 120 attgtgcgca tatataataa aatatataga aacatttata atttcctata atcagcatca 180 aacatatttc tattgatcta agtatgagtg aagagtacca aagaattcgg aatttttgga 240 gattgtatag cataggtcga caactttatg tagtaaaaat attctgattt attgctaatg 300 aaggaaaaca ctcataaacc acgaagaaac tagtagctag caaaggaata taacttattt 360 ccgtaggaca attgatatca attagacaac aacatgtaga gaaaaacaaa tgagtgggca 420 atatatagat gtatatacaa tttgcaaaga taactatttc ctccgtttca taatgtaaga 480 ctttctagca gtgtccacat tcatataaac gttaatgaat ctagacacaa aatcttacgt 540 tatgaaacgg atgaagtagg cattaaagta attgcttatt aattgccaca accaaaatgt 600 aaacaagaaa attaaattag catgaataca acccatcccg aaattgctcc aggccaagca 660 cgcttaacct catagttctt tcgcgatcag cttccggaaa aaaagttgca acttattgat 720 atgagtatcc tatcaatcct attaagccat gtgctaggat gtcacaatat attacaaaag 780 aaagggaggg actaggaaga ctattgatct tattgggctg aggagagcta gaaaagggtg 840 gaattgaatt gttagggtat aaatatcaca aatctagata gagtatggta gtacatatat 900 attatggtca atatatatta ggtttgtgtc caaaattcat gggtattcag ctgaataccc 960 atgaattatg tgggatccgc ccctg 985 // ID CLOUD-5 repbase; DNA; ORY; 1611 BP. XX AC . XX DT 13-SEP-2002 (Rel. 7.08, Created) DT 13-SEP-2002 (Rel. 7.08, Last updated, Version 1) XX DE Rice putative non-autonomous DNA transposon CLOUD-5. XX KW DNA transposon; Transposable Element; Nonautonomous; CLOUD-4; KW CLOUD-5; non-autonomous. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-1611 RA Jiang N. and Wessler R.S.; RT "CLOUD-5: a putative non-autonomous DNA transposon from Oryza RT sativa."; RL Repbase Reports 2(8), 13-13 (2002). XX DR [1] (Consensus) XX CC Related to CLOUD-4. XX SQ Sequence 1611 BP; 411 A; 357 C; 459 G; 384 T; 0 other; tggaaaaaaa gagagggaaa tatatgacca gtacttaaac ttggactagg gtgtcattta 60 ggtctatgaa cttataatgc acatccattt cctattttgg tttaatatat aatctgaggt 120 tcaaagtaca agtgactcag gttgggtgct gacatggctg tccatagtga tgaaaatttt 180 gtggacccct ctgctgtaca gtatgctccc aaatcaactc cgtccactac caaatagact 240 aacatcgcgt gtgtgggaga ggaggcgaaa gacatggtga ttaaggtttc tgctatcatc 300 ggcaatcaaa actctcctct aggggtggat gtcgagctgg cttgactcgg cttgttatcc 360 taacgagtta aaaccctagc tcggctcggc tcggctcatc agcaagctca agctagctca 420 cgagccaacg gaaaaggagg aaaggacccg cggcgcggcc acacagccag cggtgggcgt 480 ctatgggcac aacggcacat ggaccacacg gaggagctcg actgcagagg acacaagctc 540 gagctcgttg accaccatgg gaggagatcg acggcggagg agacaaggtc gagctcgctg 600 gcgaccacgg ggtggagctc gacggtagag gcgacaagct agcacttcga ccacgtggat 660 gagatgagct cgagctccat gaaacttgca ccagggagag gagcttgttg tcaggcagcg 720 ccagacgggt gccgacacca ggcactgggg gtgatcagca tcgggcacta gggacaggcg 780 gcgtcgggca caggcagact gcgctgagcg cttggtgacg ggcatgtggt ggcatggtgc 840 caagcgctga gggcggccag ccgctcgagt ggactccgct ttggcggcat gggcggaggg 900 cgagacagcg tgaggaaggg attgaggggc aggggcgtga gtagatcagt agagctaggg 960 tttttatggg ccttctaaat aaatgagcca caagcagcta ggagaaaagg cagtcctgtg 1020 agctggcttg ttatctctaa cgagctaaaa tgccagctca gctcgttaga aaaatgaaac 1080 gagccgagcc gagctgagct gagcgagcta acgagtcacg atcttttggt tcacccctag 1140 tctcctcagc ctagataaaa ggtgctatag gaagagggct atcccacaag tttgggtgag 1200 gcattattgt tgccgtgact ctccagaaat ttgaggccca tcatcttccc ccttagagac 1260 aatcacgttg cactaggctt gcgtgattat cctcttgtgg ccgattatta ccaccatcct 1320 aatcactgtc tcttcgtctt gtctcccacg ggtgtggtgg cagtcgcttt gggagtggtc 1380 agagtccatt tgagagtata tactatagcg aataagtcta aatacaaaat tctcattatt 1440 gtggactatc acgtcagtat tcgggccgaa tcatttgtac tctagatctt gactgataca 1500 ttaaaacaag attatgaatt tagatgtgca ttttataagt tgatggatct agatgatatc 1560 ccaatggtct aagtttaaga accggtcgtg tattttactt gttttttttt a 1611 // ID KIDDOA repbase; DNA; ORY; 269 BP. XX AC . XX DT 10-JUL-2002 (Rel. 7.06, Created) DT 12-MAY-2011 (Rel. 16.05, Last updated, Version 2) XX DE Consensus sequence of MITE family Kiddo-subfamily A. XX KW Harbinger; DNA transposon; Transposable Element; Nonautonomous; KW MITE; KiddoA. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-269 RA Yang G. and Hall C.T.; RT "Consensus sequence of MITE family Kiddo-subfamily A."; RL Repbase Reports 1(4), 23-23 (2001). XX DR [1] (Consensus) XX CC KiddoA is a subfamily of MITE family Kiddo. The estimated number CC for Kiddo in rice genome is about 1200. The consensus TSD is TTA. XX SQ Sequence 269 BP; 73 A; 71 C; 58 G; 67 T; 0 other; ggggctgttt ggttcccagc cacactttac cattacttgc caacaaaagt tgccacacct 60 tgcctaaggt gaggtgatca aattgttagc cacaacttac taagcctaag ggaatcttgc 120 cacacttttt tgagccattg acacgtggga cccaatttgt tggaggggaa tcttgccaca 180 actgtggcta caaccaaaca cctgtcaaat ttgcctaacc ttaggcgtgg caaactgtgg 240 caaagtgtgg cttgcaacca aacacaccc 269 // ID MULEX_OS repbase; DNA; ORY; 1797 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 04-AUG-2002 (Rel. 7.07, Last updated, Version 1) XX DE Rice non-autonomous DNA transposon MULEX_OS. XX KW DNA transposon; Transposable Element; Nonautonomous; MULEX_OS; KW non-autonomous; target site duplication. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-1797 RA Jiang N., Feschotte C. and Wessler R.S.; RT "MULEX_OS: a non-autonomous DNA transposon from Oryza sativa."; RL Repbase Reports 2(7), 32-32 (2002). XX DR [1] (Consensus) XX CC 9bp target site duplications. XX SQ Sequence 1797 BP; 436 A; 426 C; 435 G; 500 T; 0 other; ggaaaaaaat ttggtgcaga ccggctgcaa accaacgccg ctgtagcccc gacctagata 60 gatgccgcgt ggataggcta tcgatctaac agcgagattc gctcggctcc aagcaagtga 120 tatcggcgcg tccggctcga ttccctttcg gctcgctcga taagactgtc tcggctcgct 180 catccacaat cccctccctc gtctgcccat ctctctcgtc tgccgccgcg ttcgcccgtc 240 catctccctc actaaagacg gccggccggg ccagcaaggg tgagcacgag acacgcgttc 300 ctctccacct ccctgtctcc tggccatggg cgccgtcggt gacggcagcg aatccagtga 360 tggccgggtc ggcaatggtg agcatgaggc gcgttcttct ctcggcgatg gtggcgggcc 420 cagaaaggtt ggtgtcggcg aacgtgagga agcgactgct ctatctgttc ctggtcactc 480 tgcacgcgta cctagccgtc gaccaccatc aacacattgg tatagagagc tgtagttttg 540 cagtgtcagt gtgtacaccc ccatccagcg tgtgtacatt tcatcagatt agtagttaaa 600 tccatatatt gatttgcgag atcggagcaa cgagcacggc aaaccaggat gggtggtggc 660 tgcacatgtt tacaagctta attaggtaga gatcagagcg tttttatgtt gtttgtgatg 720 agcctaatgt tcagtacgta cgtctgaaat tcagaagatg gcatctaaat gttgttcaga 780 gttttttcaa ttgtttccca taccttgaat tacataaaaa gtagacctcc atccattcca 840 tgacaaaaat cctcattctc ttgtaggttc ttagcctgat ggagcaatgg cggttctcta 900 tcttttgtga aaaatataga agagggaaat actctgcatg tcaccctgtg gttctctatg 960 ttttgggcaa aatacagaag agagaaatgc tctgcctgaa aggactgtaa atgtggcaaa 1020 agaggattgt agtttgttga ttatagactt tctttgtaat ctgtaaattg tagagtttgc 1080 aaggatttat gctgcaagct gtaatctgca cttttttggt caatttgcaa ggtataaatg 1140 tgcaatatat tctttaatct gaaatataca tggcatgttg ggtgttctga atcatgcaat 1200 gtgatggatg tgttaaaaaa agtgattttt ctcttattca atacctttga aaaattcaat 1260 atagaaaatt atgcaatctg aaatcatgaa ggtaaaatct gaaatgtgat gtctaaaaac 1320 tgatccttct caaacgttgg taccaaattc attgtcacaa atgacagtgt aaataaaaat 1380 aatcatttgc tgccatgcca tgtgctagtg caggcgaaaa tggctgatgt ccggtcacaa 1440 gaaaccccgt ggctggatcc ttcccttgcc ctcctcttgc catggtggtt acgtcatcca 1500 tgaagcttct gtcatggcgg cagcggttgc cggcgatttt ggccgcgatc tggcgagacg 1560 tctctcttcg cgtccccgcg tgatctaggg tatcgaaata atatgttgat tcatctactc 1620 gaacgcgccg agccaagcac gcccctttcc acggagtcga acgagccgag ccgccgaacg 1680 tccactctgg gcatattcat ggcaagtgtt cgattagact tctgtccacg cggcatctat 1740 ccaggttggg gctgcagcgc gttggtttgc agccggtctg caccaaattt tttttcc 1797 // ID RBTVL_I repbase; DNA; ORY; 5949 BP. XX AC AE017121; XX DT 04-AUG-2005 (Rel. 10.07, Created) DT 24-AUG-2005 (Rel. 10.07, Last updated, Version 3) XX DE Rice tungro bacilliform virus like repeat (internal portion). XX KW LTR Retrotransposon; Transposable Element; Interspersed repeat; KW RBTVL_LTR; caulimoviriadae; endogenous badnavirus; LTR; KW reverse transcriptase; RBTVL_I. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-5949 RA Kunii M., Kanda M., Nagano H., Uyeda I., Kishima Y. and Sano Y.; RT "Reconstruction of putative DNA virus from endogenous rice tungro RT bacilliform virus-like sequences in the rice genome: implications RT for integration and evolution."; RL BMC Genomics 5(1), 80-80 (2004). XX RN [2] RP 1-5949 RA Jurka J.; RT "A recent copy of LTR-retrotransposon related to Rice tungro RT bacilliform virus."; RL Direct Submission to Repbase Update (04-AUG-2005). XX DR Genbank; AE017121; Positions 209328 203380. XX CC LTRs are 99% identical. Present in multiple copies in the rice CC genome. XX FH Key Location/Qualifiers FT CDS 503..5788 FT /product="RBTVL_I_1p" FT /translation="MDISRSLFRRIASRDDNCSDKQKGKYDDIDELKDVAQ FT VDKQLERYQRDTLRAIRPQQVYCMGFFENKNGLYRISREVELSVLTKPVEL FT KIVAKEFENSLKYSGYKYIHQGMYIIGIKGMTRKKLGAKVLITLLDKRWDT FT INKASLGYLEGDMNENMLITYIAPDLMMPVNEFIDKMSFGFQTKGYEEFKG FT TNLLISIEFIGRLTNRSASKYKINVNDVIEKMHSKGIKFMSPLIIDSEERA FT GEKWPISEFIKNKTLSQPENFISYQDSKGNVSIRFTNYKTRASDDLDAESS FT DRDIIDNRRHSISELMEKLDHESEIKYYEDKLRDIADEYNNSMKSEWPKIR FT DKELYFYRELSRIKKQKKEKSLVIEIPRTQEIKIEQIKSEEPREEIQKLDK FT VLSEEEQWEVNEKLLLESYEEENNLIEEIENIEEEDNAEQYNDFIDSLDEE FT GLHNLDNAMEAMEVDLGTGKRKRYGEGSVKNEGERERPARAAGRWPPEKEE FT YSYHYIPGQYRHMGTKRRDFEKPIKFQNQKSDGAILNLAAHDPIDWPNIIS FT IWKGLIVQKYIQNQHNIGNKVEDMITYLETFLGESAKVLWEQWVEKNPNNY FT EELKRAGSNPHNFENIVSNIIIAEDPELGYTTLQNERLKEIEKLTLTSWKG FT IKEFSQHYLYNATTAKQGYNKGIVERYFNKLPDPLGSMIFEEYKKETEGAE FT INISQAITFVFKQLRKICTGIQAQRSMKHSDYNFCNKIIQIPLSYGEDRPR FT NKRNHRYQSRNSNNIKTKKRYFLRRSDNRAPFLHKRNVRRYNPKKTYDKTC FT RCFICNSPDHLSRTCPNKDQKRYSSTYEEQERVLIIDSVNENILVCDDEIK FT DDESIYSIIETDEIENTNEEYESTDEELDLIDELAGLKIELMDQLNCEHDW FT IRGKGDYNIKCAFCIYYPSQDNRVTCSICLKQACAECIKANKQKWRKEIEL FT ESDERILSSRVRVLENRINKLEVELENLKINYDIKALPENKDIQNTEFKEQ FT VITLKDSNTAKIIQLKDAITNFGNKYIVKLPFKEILGIRIPVKVKLSPKVS FT YKILALVDTGCTKNIIHDKYFIKCPEIVHTIDDNKAEVSTDMSGIKKIHNQ FT LAHNVEVYINGTKYIIDEITIRNLSMISDDMIIGLRFLQQSVQTTVIHEQG FT ITFIPYQNNVPYISEVRKRGGARIKPDNLEALNLESEERINEYELSENIDN FT YSFSSYLPKSMELPGKTSWEDRYLLKATKDFEYICREMASQKSEWLTNMSS FT WRLPQLPRGHGERFNHNFRITELQQGLLNLLWQTKNKKEKAHALNGLAYYF FT KNFVPSDQKITEKRAKIQDIPHHEERLLDYREEKSRDGQDKLPMEVEQSMA FT TDKNTKVFSDKILISADPASSMVAFHININNLLQSFPHNKPSSSTKRHDTI FT PQTPYILHNHPNLFLPQYILRTQPKAPCRSCAYKDSCKKKLKSQNPMSTTY FT ENLQPRLSFKTEQTLSCFGQDILDLVWQKFKERQMKIFLGLQDYFFDLLEG FT RERNPAIRVIIYMLPLLRLDDQAISDPSYRFLVLKAEINLQRFRNLPTYNH FT EEISLQTIIDHGLVNSIYATLDQILQSDLGNAVKDVCRRLGHGRYRIIFSS FT IPPKFTPPVRPAIHYIYIMKGQFNFQEDGPSKLSDEEEEIYTTVANHENWR FT LFSEAAEIEEAITTDYEYQLVFQNKITRIFISKFYNQSYEYFKGAGRIIKP FT DFGNECSKKSYYRSLAQWFQKTEPSEIDTVQSAPMIINEDNE" XX SQ Sequence 5949 BP; 2476 A; 867 C; 1070 G; 1536 T; 0 other; taggtttgtc tgaagcatag gtgtggtgta tattgtctga agcataagtg tggtatcaga 60 gcctggtaat catagagaag ctaaatttag aagctaatat tggaaagtta ataaatacca 120 aagataatat cgacataagg tgtagactaa gccatactga agaacatagt tggcactcta 180 ataatagcca actaaattta attgtagatt taatatataa tttctatata aattggagta 240 agagacaaga agatttagag caaaagttag aagatatata taaagaacaa aagcaatttg 300 tagaacaata ttcttttctt aataataagc taaatactac attagaatta ttagaagatt 360 ataagataag gcaaaataaa atttcacaga atagtgatta tattaaagaa ttactagaca 420 aaatcaactc tagtaaaggt aaggaaatag ttttggcttc atctggcata gtctcatctt 480 cacaagccat taattctgaa aaatggacat atctaggagt ctctttagaa gaatagcaag 540 cagagatgat aactgttctg ataaacaaaa aggcaaatat gatgacatag atgagctgaa 600 agatgttgca caagtagata agcagctcga aagatatcaa cgagatactt taagggcaat 660 aaggcctcaa caagtatact gcatgggatt ttttgagaat aagaatgggc tttatagaat 720 atctagagaa gtagaattaa gtgttctaac aaagccagta gaattaaaaa tagtagctaa 780 agaatttgaa aatagtttaa aatattcagg atataagtat attcaccaag gtatgtacat 840 aataggaatc aaaggaatga caagaaagaa attaggagct aaagtgctaa taaccttatt 900 agataaaaga tgggacacaa taaacaaagc atctttaggc tatctagaag gagatatgaa 960 tgaaaatatg ttgataacct atatagcgcc tgatttaatg atgcctgtaa atgaattcat 1020 agataaaatg agttttggtt tccaaacaaa aggatacgaa gagtttaagg gaacaaattt 1080 attaataagt atagaattta taggaagatt gactaataga agtgcctcca aatacaaaat 1140 caatgtaaat gatgtgatag aaaaaatgca ttctaaagga ataaaattca tgagcccttt 1200 aataatagac tctgaagaaa gagcaggaga aaaatggcca attagtgaat ttataaaaaa 1260 taaaaccttg agtcagcctg aaaacttcat aagttaccaa gacagcaaag ggaatgttag 1320 tattagattt acaaattata aaaccagagc ttcggatgat ttggatgcag aatcatctga 1380 cagagatatt atagataaca gaagacatag tatatctgaa ttgatggaaa aattagacca 1440 tgaaagtgaa ataaaatatt atgaagataa attaagagat atagcagatg aatataataa 1500 ctctatgaaa agtgagtggc ctaaaattag agacaaggaa ctttatttct atagagaact 1560 atccaggatt aagaaacaaa aaaaagagaa aagcttggtc atagaaatcc ccagaaccca 1620 ggaaattaaa atagaacaaa taaagtcaga agaaccaaga gaagaaatcc aaaagttaga 1680 taaggtatta agtgaggaag agcaatggga agtaaatgag aaattattac tagagagtta 1740 tgaagaagaa aacaacctga tagaggaaat agagaatata gaagaagaag ataatgcaga 1800 acaatataat gattttatag actcattgga tgaggaaggt ttgcataatc tagataatgc 1860 aatggaagct atggaagtag atttgggaac aggaaaaagg aaaagatacg gagagggttc 1920 tgtaaaaaat gaaggagaaa gagaaagacc agccagggca gcaggaagat ggcctccaga 1980 aaaagaagaa tattcatatc attatatccc aggacagtat aggcacatgg gcactaaaag 2040 aagagatttt gagaaaccaa taaaatttca aaatcaaaaa agtgatgggg ctatactaaa 2100 tctagcagca catgatccca tagactggcc aaatatcatt agtatttgga aggggttaat 2160 agttcaaaaa tacatacaaa atcagcataa tatagggaat aaggtggagg atatgataac 2220 ttatttagaa acatttttgg gtgaatctgc taaagtccta tgggaacaat gggttgaaaa 2280 gaatcctaat aactatgaag agctaaaaag agcaggaagt aatcctcaca actttgaaaa 2340 tatagtatct aatattatca tagctgaaga cccagaatta ggatatacaa ccctgcaaaa 2400 tgaaagatta aaagaaatag aaaaattaac tttaacaagc tggaaaggta taaaggaatt 2460 ttctcaacat tatctatata atgcaacaac tgctaagcaa ggatacaata agggaatagt 2520 tgagcgatat tttaataaac tacctgaccc attaggtagt atgatttttg aggaatataa 2580 aaaggaaact gaaggagctg aaattaatat ttcccaagcc ataaccttcg tgttcaaaca 2640 attaagaaaa atatgcacag gaatacaagc ccaaaggtca atgaaacatt ctgattataa 2700 tttttgcaat aaaataatac aaataccttt atcatatgga gaagataggc ctagaaataa 2760 aagaaaccat agatatcaaa gtagaaatag caataatata aagacaaaga aaaggtactt 2820 cttaagaaga tcagataata gagcaccttt cttacataaa cgaaatgtaa gaagatataa 2880 cccaaagaaa acttatgata agacatgcag atgtttcata tgtaattcac cagatcattt 2940 aagtagaact tgcccaaata aagatcaaaa aagatattct agtacatatg aagaacaaga 3000 gagagtttta attatagata gcgtaaatga aaatatatta gtatgtgatg atgaaataaa 3060 agatgacgaa tcaatatatt ctatcataga aacagatgaa attgaaaaca ccaatgaaga 3120 gtatgaatca accgatgaag agttagattt aattgacgaa ctagccggtt taaaaataga 3180 attgatggat cagttaaatt gtgaacatga ttggattaga ggaaaaggag attataacat 3240 taaatgtgct ttttgcatct attacccaag ccaagataat agagtaacct gtagtatatg 3300 cttaaaacaa gcttgtgctg aatgtataaa agcaaataaa caaaaatgga gaaaagagat 3360 agaattagaa tcagatgaaa ggatattatc tagtagagta cgagttttag aaaacagaat 3420 aaataaacta gaagtggaac tagagaatct aaaaattaac tatgatatta aggcattacc 3480 agaaaataag gatatacaaa ataccgaatt taaagagcaa gtgataacat taaaagacag 3540 taatactgct aaaataattc aactaaaaga tgccataact aattttggaa ataaatatat 3600 agtaaaactg cctttcaaag aaattttggg aataagaata ccggtaaaag taaaactatc 3660 acccaaggta tcatataaaa ttctagcact agtagacact gggtgtacaa aaaatattat 3720 tcatgataag tacttcataa aatgtccaga aatagttcat acaattgatg ataataaggc 3780 agaagtctct acagacatgt ccggaataaa gaaaattcat aatcagctag ctcataatgt 3840 tgaagtatac attaatggaa ctaaatatat aatagatgag attacaataa gaaacttatc 3900 catgataagt gatgacatga taattggcct aaggttttta caacaatcgg tacaaaccac 3960 agtaatacat gagcaaggaa ttacttttat cccatatcaa aacaatgtgc catatatctc 4020 agaggtacga aagcgtggtg gagccagaat caaacccgac aaccttgaag cacttaatct 4080 tgagtctgaa gaaagaatta atgaatatga gcttagtgag aatatagaca actattcttt 4140 ctcatcatat cttccaaaat ctatggaatt gccaggtaag acatcatggg aagatagata 4200 tttattaaaa gctactaaag attttgaata tatatgcagg gaaatggctt cacagaagtc 4260 tgaatggctc acaaatatga gttcatggag actgccccaa ctgcctagag gccatggaga 4320 acgatttaat cacaatttca gaataacaga gctacaacaa gggttattaa acctcttgtg 4380 gcaaacaaaa aacaaaaaag aaaaagctca tgccttaaat ggcctggcat attatttcaa 4440 aaatttcgtg ccctcagatc aaaagataac agaaaaaagg gctaaaatac aagatatccc 4500 tcatcatgag gaaaggttac tagattatcg cgaggagaaa tcccgtgatg gccaagataa 4560 acttcccatg gaagttgaac aatctatggc aacagataag aataccaagg tattctcaga 4620 taagattttg atctcagcag atcctgcttc gagcatggtt gctttccaca taaatatcaa 4680 taacctattg caatcttttc cacataataa accatcatca tccacaaaaa ggcatgatac 4740 cattccccaa acaccataca tactgcataa tcatcctaat ttattccttc cacaatatat 4800 actccggacc cagccaaaag caccatgtag atcttgtgcc tacaaagatt cttgcaaaaa 4860 gaaacttaaa agccaaaatc ccatgagtac tacatacgaa aatctccaac ccagattaag 4920 cttcaaaacg gaacaaactt tatcctgctt tgggcaagac atcctcgatc ttgtttggca 4980 aaagtttaag gagagacaaa tgaaaatatt ccttggactc caagattatt tctttgatct 5040 cttagaaggg agagaaagaa acccagccat acgagtaatc atatatatgc tccctctctt 5100 aagactagat gatcaggcaa tttctgaccc atcctataga ttcctggttc tcaaagctga 5160 gataaatctt caaagattcc ggaacctacc cacatacaac catgaagaaa tatctctcca 5220 aaccattata gatcatggtc ttgtgaattc catatatgca accctcgatc agatccttca 5280 atctgattta ggaaacgctg tgaaagatgt atgcaggaga cttggacatg gaagatacag 5340 gattatcttc tcctcaatac caccaaaatt cacaccacct gttcgtccag caattcatta 5400 tatatatatc atgaagggac aatttaattt tcaagaagac ggtcctagca aactatcgga 5460 tgaagaggaa gaaatatata caacagttgc taatcatgaa aattggagat tattttctga 5520 agctgcagaa attgaagaag ctatcaccac agattatgaa tatcagctgg ttttccaaaa 5580 caagatcaca aggattttta tcagcaaatt ctacaaccaa agttatgaat acttcaaggg 5640 agcagggcgc ataattaaac cggattttgg aaatgaatgc tccaagaaaa gttactacag 5700 aagcctggct cagtggtttc agaaaacaga gccatcagag attgacacgg tgcaatcagc 5760 accaatgata atcaacgaag ataatgaata aagatcttgt catccccgac aaagatcact 5820 attcaagata aggaatctac actattccag ataagtatgg atcttggtgg tcatgggcag 5880 ccagatgaat agaattcttt aagctaaata tgtttttcaa tatatattga taatagaata 5940 tcaataatt 5949 // ID SC-8 repbase; DNA; ORY; 4950 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 04-AUG-2002 (Rel. 7.07, Last updated, Version 1) XX DE Rice copia-type retrotransposon SC-8. XX KW Copia; LTR Retrotransposon; Transposable Element; KW COPIA superfamily; SC-3; SC-8. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-4950 RA Jiang N. and Wessler R.S.; RT "SC-8: a copia-type retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 40-40 (2002). XX DR [1] (Consensus) XX CC SC-8 is a Copia-type retrotransposon. It has 268bp LTRs. CC Related to SC-3. XX SQ Sequence 4950 BP; 1186 A; 1284 C; 1419 G; 1061 T; 0 other; tgttagcata atccttgcta ctgtaggttc cttagctagt aagaatgtac agctgcttaa 60 cagctggtag tagtagtaaa tttagtcttt actttagctg taaacagcaa gatgaatagt 120 atgtcggtta ctgtagcata ctgtagcacc gacttaaagc cctataaaag gacatgtacc 180 cctcttgagt tagtaagctt ttcagctcat tttcagtttc agtttcagct agactattga 240 gtgtagttca gaagtgatcc taccaacaat tggtatcaga gctcaggtta aagaagtgtg 300 agagagagat ggagggagta ccagctgctg gagccaatgc ttccaggtcg ccacaacacc 360 gaggccgccg tcactcgtta tcgccaacac cacggcgagg acgaggtcga ggcgctgctg 420 ttcgagaggt tgttgtgcag cggactgtca gggaggttgg cggcgctgct gctttcccca 480 ccctcacgcg aaccaactac accgagtggt cgctgctgat gaaggtgatg ctgcaagccc 540 gtggcctttg ggacgcggtg gagcatggtg aatgcgatga gcaagaagac aggatggcaa 600 tggaggccat cctacgcgct gtccccagcg agatgatctc gctgctcgcc accaaggact 660 ccgcgaagga cgcctgggat gccatcaaag tgatgcacgt cggcgtggac cgcgtgagga 720 aggcgaaggc gcaacagctg cgccgggagt atgaatccat ctcgttccat gatggtgaat 780 cgatcgacga cttcgcccta cggctcacaa gcctagtgtc tcagcttggg acattaggag 840 aacgaatcga ggagcagaac gtcatcgaga agttcttgcg cgtcgtccca gagcgatttt 900 cccaaatcgc tgtgtcgatt gagaccctgt tggatctctc gacactcacc atcgaggacg 960 tcactaggcg tctcaaggtg gcggaggaac ggcaaccagc tccaacgtcg acgactactc 1020 cagccggagg ccagcttctc ctcacggagg agcagtggct cgcacggcag aaggagcgac 1080 aaaaagggga gcaatcctcc aagcagtcgc aaggtggagc tcgtcagcga cctcgctccc 1140 atcgcaagaa aagaggtttt ggtggcggcg taggaggcga gaaagggaac accaatcggg 1200 acacggcacc aaacagatgc cacaattgtg gccgtcttgg ccattgggcc aaggactgtc 1260 gccagcccaa gaaagaagcc gctcacctag cccaaggtga tgacgatgac gacgtcctgc 1320 tgctttcgcg ggcatgcgag cttgaagatg acgatgccac tttgttgatg gcccacgctt 1380 gcgagctcaa tgatggcccc atcatcgcgc catctcctgt ctccctcgtt gaacagcgag 1440 tgcaggtgag cctgggagcc acggacgctg aggacaagga ggaggcgtgg taccttgaca 1500 caggagccac caaccacatg acgggccgtg gtgacgtctt tgctgagctc gatcgaagcg 1560 tcaccggcac cgtcaaattt ggagacagct ccatcgtaga catcaagggt gccggtaacg 1620 tcatcttcac cggcaagaat ggcgagcaca aggttctcag tggcgtctac tacattccgc 1680 gcctcaagag ctcaatcatc agcatcggtc agcttgatga aagcgagacg cgtgtgctgg 1740 tcgaggacgg catcatgcgt atctgggacc gccgccgccg tcttcttgcc aagatcaagc 1800 ggggacgaag ccgtctatac gtcctccgcc tcgaggttgc taggccgatt tgcttggcta 1860 cgcgacatga tgatgttgcc tggcgctggt acgagcgctt cgggcacatc cacttcggct 1920 cgctagaaaa gatgggccga caagagctcg tgcgtggcct gcctcgactg gagcatgtcg 1980 agcaactttg cgacacgtgt gtcatcacca agcatcggcg cgctgccttt ccaaaggcag 2040 ccaagtaccg cgctcaggag ccgctagatc tcgtccatgg cgacatctgt ggccctatca 2100 cgccggcaac gccaggtggc cggcgttact tcttgctgct ggtcgacgat gccacacgat 2160 acatgtgggt ggcgcttcta gcagccaaga gcaatgcacc tgacgccatc aagaaaattc 2220 agatggcagc cgagactcac tatgggcgca agctgtgtgt atttcgcacg gacaacggcg 2280 gcgagttcac gtcgcttgag ttcgctgcct actgcactga tgagggtatc caacgtcatt 2340 tctccgcgcc ctacgcccca caacaaaatg gcgtggtcga gcggcggaat cagacagtgg 2400 tgtccatggc gcgcgccctt ctcaaacaga ggggaatgcc tgcggagttt tggggggagg 2460 ctgtcagcac ggctgtcttc ctcctcaatt gtgcaccaac caaaagcctc actggcaaga 2520 cgccgtatga agcttggcac ggcaagaagc cgatggtcag cttcctacgt accttcgggt 2580 gcctggcgta cgtgaaggag ctaaacgatg tgcgcaagct cgacgaccgc agcacacccg 2640 gcgtcttcat tggctatgaa gaaggggtga aggcatatcg tgtcctggat ccaaggacac 2700 ggcgtgtacg tctcgcccgt gatgtcatct ttgacgagag ccgcgggtgg gactggacgg 2760 cagcaagcgg cacagatgct cgactgagca gcgatttcgc catcgagtac catgttgaga 2820 agaccactgg gcatcctatc cctagtgtgg ggggaggcgt ggtgacccca tcagcatccc 2880 caacgccact acaagagact tcaccagcaa cccctgccac accagcacca agtcctagcg 2940 ttgccccaac agagttcgtg tcacctccct cacacgacga ggagaggatc gacgcggcgc 3000 actccaacac ccctgtccgc taccgcacag tcgacaactt gatcggggag aatgccccgg 3060 caccagggat tgcacaacgg gaactcgagg aggcgtcttt gctcctcgct ggacctggtg 3120 agccatgctc gtttgcagag gcggagggtg atgatgcatg gcgagcagcc atgcgtgaag 3180 agatggacgc ggtgaatcgc aatgggattt gggagcttgt tgatctccca catggccatc 3240 gcccaattgg actcaaatgg gtctataaat tgaagaagaa cgaggccgga aaggtggtca 3300 agcacaaagc tcgtctcgtc gccaggggat ttgtccagca acctgggatt gattttgacg 3360 aggtttttgc gcccgtcgcg cgcatggagt caattcgtct cctgcttgcg gtcgccgccc 3420 aaaaagggtg gcacgtccat cacatggacg tgaagtctgc ctttctcaat ggagatttgg 3480 cagaggaggt gtatgtgaag cagccccctg gttttgtcgt cgccggagaa gaagacaagg 3540 tcctccggct gcgcaaggct ctttatggcc tgcgacaggc gccaagagcc tggaatgcga 3600 agcttgattg tactctgaag gagctcggtt tcgaccaaag caagcatgag cacgccatgt 3660 accgacgaaa caatggtggc tctgctctac tcgtcggggt ctatgtagat gaccttgtga 3720 tcaccgggcc atcgacaaga gcaattgaac aattcaagga agaaatgaag gcaaagtttc 3780 agatgagtga tcttggcttg ctctctttct accttggaat tgaggtgaag caaggagatg 3840 atggaatctc cctgaaccag gggcgctatg ctcagcgcat tgtggagtcg gctggcctca 3900 aggactgcaa cccttgcgcc actccaatgg aagaaaggct caagctgagc cgtgatagca 3960 cggcacctcc cgttgatgca acaaaatatc gacggctggt tggtagcctt cgctatcttg 4020 tgcacacacg gccagaccta gcttttgctg ttgggttcgt gagtcgcttc atggagcggc 4080 caactgagga gcacatggtg gccgtgaagc gcattctacg ctatgtcgct ggcacgatgg 4140 agtacggact tcattacaaa agagagaaag aggagcagcg gctgattggt tacagcgaca 4200 gcgacctcgc cggcgacatt gatacaagga gaagcacaag tggcatgttg tttttccttg 4260 attcaagctt ggtgagttgg caatccatca agcagagagt ggtggcttta tcttcctgtg 4320 aagcagaata tgttgcagcc accaatgctg ccacacaagg aatttggttg gctcgattgc 4380 ttggtgaact ccttgggaag caacctaaag cgatcgagct aaaggtggat agcaagtctg 4440 ccttggcgct ggcaaagaac cctgtcttcc atgagcgcag caagcatatt gatttgcgct 4500 atcactttat cagagactgc ttggaggaag gaagcatcaa cgccagcttc atcaccacca 4560 tggaccagct cgctgacatt ctaacgaagg cattaggacg ggtgaaattc caagaattgc 4620 gagctaagat tggaatggtc caaatcaatc aaaatctgat gtgcaaggat tagggggaga 4680 attgttagca taatccttgc tactgtaggt tccttagcta gtaagaatgt acagctgctt 4740 aacagctggt agtagtagta aatttagtct ttactttagc tgtaaacagc aagataaata 4800 gtatgtcggt tactgtagca tactgtagca ccgacttaaa gccctataaa aggacatgta 4860 cccctcttga gttagtaagc ttttcagctc attttcagtt tcagtttcag ctagactatt 4920 gagtgtagtt cagaagtgat cctaccaaca 4950 // ID RIRE3_I repbase; DNA; ORY; 5775 BP. XX AC AB014738; XX DT 10-JUL-2002 (Rel. 7.06, Created) DT 10-JUL-2002 (Rel. 7.06, Last updated, Version 2) XX DE Internal portion of the gypsy-type retrotransposon RIRE3. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW endogenous retrovirus; GYPSY superfamily; Met tRNA as PBS; KW RIRE3_I; RIRE3_LTR; gag; pol. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-5775 RA Ohtsubo E.; RT "Direct submission."; RL Direct Submission to EMBL/GenBank/DDBJ (22-MAY-1998). Eiichi RL Ohtsubo, The University of Tokyo, Institute of Molecular and RL Cellular Biosciences; Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-0032, RL Japan (E-mail:eohtsubo@ims.u-tokyo.ac.jp, Tel:+81-3-5684-3269, RL Fax:+81-3-5684-3269). XX DR GenBank; AB014738; Positions 1 5775. XX CC CDS 184..993 CC /product="gag-like protein" CC CDS 1241..5773 CC /product="pol protein". XX SQ Sequence 5775 BP; 1402 A; 1522 C; 1524 G; 1327 T; 0 other; gttggtatca gagccccctt gaccctagga cgagctgtag atccgaagcc ttagcagtat 60 tttcgaaata aaaatccttt gttatttgtg aaaaccctct agtctctctc tgtcttgctg 120 cttcatttat cgtcaaaatc tgacctttaa aatgttgttt ttcttttttg tttttgtttg 180 tagatggccg gcagcgtcac ccgtcgtggt ttggacatga ctggcttcgt cttggagctg 240 cggggcatgt gcgttgtcct ggggtatcca catggagtgg actaccaggc caggccgctt 300 ccggagcagg agggtgacga tgcagagccc cacgctgctt gggaggtcac tgcagtgatc 360 ctctctggct ctcccgagcg gacttcgctg gcagtcaccg cgggtgggga ttccttcccc 420 gccgcttgcc agagcgccgc tctcctcgcc atcggcaccc ttcactagcg ctacccggac 480 gagttgcagc actcgcccta ccgctaccac catcgccgcg gaggagcccg cgactacgcc 540 accttccggg atgctagctc ggaagatgac gttaccatcg tgcacctggc gcgcatggtg 600 gaggcgtatg acgcggctcg tatcgacttc catcaaatgg tgcgccgtgg gatggttgaa 660 aacaacttga aaatcctgga gctgcgtcag gagaacctgc agctcaagaa ggacttaaac 720 gcggtggagg cgcagctgca tcagctcaag atcgcccagg gagaggacag ccgtcccaag 780 cgtcgccgcg tcttccgcag ccagaagatc accgcccgca agagcacctc caggcccgag 840 cttgttcgtc agtccctggc gtggacctgc ttcgtcgaga cccctcgtgc cgagcccgcg 900 cccgtggttc cccaggaggg ggaagcatcc ggcgttggta gcacggagga tgcgctgttg 960 ctcaccttcc gtcctggccc gtcgcagcag tagacgagca gttagtaggc tcgcgcgtgt 1020 gttctttctc gtttatcttc ttgttgagtc gtgtggggca tggttatgcc ggtgtgtggt 1080 ataactgtgt cggagcctgt cttattttat ttgcctaagc aacttgaact ctaatgaacc 1140 aatttaatag cagtaataaa ttcaagaatt atggtagtcg tgggtggtta gttttaatag 1200 ttagctcttt ctgtttgctg gatccgtgtg gggtttacag atggtgacaa ccaggagaac 1260 tgctaatacc ggtgatggca accaacccga aggcagcaac atcaacaacc atggcagccc 1320 acctccacct ccgcctcctc caccaccccc agacaccaac gccattctca ctcaaatcct 1380 cgcccagcaa gccaacatga tggctgcttt cctccaccac atccaaaatc caccacggca 1440 taatgctcca cctccaccac cacccccgca acactctgag ctcgccgagt tccttcgcat 1500 tcgcccgcct accttctcca gctccaataa ccccgtggat gccttggatt ggttgcatgc 1560 agtggggaag aagttagaca ctgtgcagtg caacgataag gagaaagtca tctttgccac 1620 ccaccagctg caggggcccg catctctatg gtgggactac ttccaggcta cgcagcccga 1680 ggggcagcct atcacctggg cccgtttcac cgccgctttc cggagaaccc atgtgcccgc 1740 cggagtcgtg gctcttaaga agagggagtt ccgagagttg aagcaaggca accgctccgt 1800 gatggagtat ttgcacgagt tcaacaatct ggcccggtac gctccggagg atgtgcggga 1860 agatgaggag aagcaagaga agttcttggc gggaatggac cctgagctgt ccgttggtct 1920 agtctctggg gactatccgg atttccaacg tctggtggac aagagcatcc gcttggaagc 1980 caagcacaag gagctggagt cgcacaagcg ccgcttggcg aacttccgca atcagcaggg 2040 tgctaaccag agggtccgct acaccaatcc ctatccaggg ggatcctcct cgcagcagca 2100 acaacaacag cagcagcaat cccgccctgc gcctcgacct caattcgtgg tgcgcgtccc 2160 acagccgcag cagcagcaga atcagcaagg gactcgtgcg ccccgtcctc ctacgccagc 2220 tgtgcagccc gttcaaggcc gcagggacgc ttcaggtccg cagcgtctgt gcttcaactg 2280 cttcgagccc gggcactttg cggataaatg cccgaagccg aggcggcagc aaggccaagc 2340 gcctccccgc cccaacaacg gcgggaagga tgtcattcgg ggccgtgtga atcacgtgac 2400 ggccgaggac gtgctgacaa ctccagactt catcgttggt acgttcctcg ttcattccat 2460 ccctgctacc attttgttcg actctggagc ttcccactcg ttcatatcta tgccattcgt 2520 ggggaaaaac cagttggggg tagaaaggct tagaaaccct ctgctcatca ccacccctgg 2580 aggggttatg acagcaaagt attatagtcc tgccgtccct atagaaatcc aggggattcc 2640 ttttccctcg gatctgattc tgctagacac caagaacttg gatgtgatcc ttgggatgaa 2700 ttggttggct caattccaag gagtagtgga ttgcgcgaga cgcactgtca ctctgtaccg 2760 agggccggaa caaccggttg ttttctttgc acccccaacc tctgtcagaa gttcagaact 2820 gcattagata ggactgtcag aaatccccat tgtcagagag ttcggagacg tgtttccgga 2880 agaactacct ggtatgccgc cccagcgaga gattgagttc cggatagatc ttgctccagg 2940 aaccactcct ctgtacaagc gaccctaccg tatggcagca aatgaactgg ccgaagtcaa 3000 gaaacagttg gaagagttga aagaaaaggg gtatatacgt ccgagtactt ccccatgggg 3060 tgctcctgtg atttttgtag agaagaaaga caagacgaag aggatgtgcg ttgactacag 3120 agctctcaat gaagtcacta tcaaaaacaa gtaccctctt ccccggatcg atgatctgtt 3180 cgatcagctt aaaggtgcca ctgtattctc caagattgat cttcgttccg gatatcacca 3240 gttgcgcatc cgggaagaag atattccgaa gaccgcattc accacgcgat acgggctgta 3300 tgaattcacg gtgatgtcgt tcggtctaac caatgctcct gcatttttca tgaacttgat 3360 gaacaaagtg ttcatggaat acttggataa gttcgttgtg gttttcatcg atgacattct 3420 gatatactca caatcagagg aagaccatca gcaccatctc cgtctggtgt tgggaaagtt 3480 gcgggaacat caattgtatg ccaaacttag caagtgtgag ttctggttgt ccgaagtcaa 3540 attcttaggg cacgtgatat ctgctaaagg agttgcggtg gaccccgaaa cagtgaccgc 3600 cgtcactgat tggaagcaac ccaagacagt cactcaagtc cgcagtttct taggtttggc 3660 aggatactac cgaagttgta tcgagaactt ctccaaaatc gctcgaccca tgacacagtt 3720 gttgaagaaa gaagagaaat ttgtgtggag cccgcaatgc gagaaggcgt tcaaaaccct 3780 caaagaaaag ctggtttcct cgccagtgtt aatcttgccg gatactcgca aggatttcat 3840 ggtgtattgt gacgcttcgc gccaaggatt ggggtgcgtg ctcatgcagg atggtcatgt 3900 ggtggcctat gcctcacgcc agctacggcc tcatgaaggc aactacccta cccatgattt 3960 ggagttagct gcggtggttc atgctcttaa gatcaagcgg cactatctca ttgggaatcg 4020 ctgtgaaata tatattaatc ataagttttt gaaatacatc ttcactcagt cggatctgaa 4080 tcttcggcag agaagatggt tagaactcat caaggattat aatgtgggaa tccactatca 4140 tcctggtaag gccaacgtgg ttgccgacgc tctaagtcga aagagccact gcaacactct 4200 caacgtccga ggcattccac ccgagcttaa tcaacagatg gaagccctga acctaagcat 4260 agttggtcac ggattcttgg ctgcgttgga agccaagccc accttgctcg atcaaatccg 4320 cgaggctcag aagaatgatc cggacatgca tggactcatc aagaatatga aacagggtaa 4380 agctgctggt ttcacagagg atgaacacgg aaccttatgg aacggaaagc gagtatgcgt 4440 tcccgataac agagaactta aacaactgat acttcaggaa gctcacgaaa gtccttattc 4500 cattcacccg ggcagtacca agatgtactt agacttgaag gagaaatact ggtgggtcag 4560 catgaagcgg gaaattgcag agttcgtggc tctttgtgat gtgtgccagc gtgtcaaggc 4620 agagcaccaa cgaccggccg gacttctcca acctctccaa gtgccggaat ggaaatggga 4680 tgaaattggg atggatttca tcaccggcct tccaaaaacc caaggtggat atgattctat 4740 atgggtagtc gtggatcgat taaccaaggt ggctcgattt attccggtga agaccaccta 4800 tggagggaac aaactagcgg aactctactt cgctaggatc gtgagtctcc atggcgttcc 4860 caagaaaatc gtatctgata aggggagcca attcacctct cacttttgga agaagctcca 4920 agaagagctt ggtactcggt tgaatttcag caccggttac cacccgcaga cagatggaca 4980 gaccgagcgt ctaaatcaaa tcctagaaga tatcgttcgc gcatgtgtcc tagatttcgg 5040 gaagacctgg gataagagtc tcccctatgc cgagttctcc tacaataaca gttatcaagc 5100 cagcatacaa atggcacctt atgaagcgtt gtacgggcgc aaatgtcgga caccgctatt 5160 gtgggatcaa gtcggagaaa gccaagtgtt cgggactgac atcctgagag aagctgaagc 5220 taaagtcaga atcattcggg ataatctaaa ggtggcacag tctcggcaga aaggctatgc 5280 agacaaccgt cgccgtgact tggaattcgc agtggatgat tttgtgtatc tccgggtaac 5340 accattgcga ggggtacacc ggtttcagac gaaaggaaac tcgcacctcg gtatgtgggt 5400 cctttccgta tcgttgctcg acgcggagaa gtcgcttacc aattggagct gcccgcctcc 5460 ttgggcaacg tgcatgatgt gttccatgtg tcgcaactca agaaatgcct tcgagtgcca 5520 tccgagcagg ccgactcaga gcaaattgaa gttcgcgaag atttgaccta cgtggagagg 5580 ccagtgaaaa tcctggacac catggagcgc aggaccagga accggataat ccgtttttgc 5640 aaggtccagt ggagcaacca cgccgaagaa gaagctactt gggagcgcga agacgagctg 5700 aagacagccc atcccgatct cttcgccagt tcttccgaat ctcggggtcg agattccgtt 5760 taaggggggt aggtt 5775 // ID SZ-10LTR repbase; DNA; ORY; 1412 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 04-AUG-2002 (Rel. 7.07, Last updated, Version 1) XX DE Rice long terminal repeat SZ-10LTR. XX KW Long terminal repeat; SZ-10LTR; retrotransposon. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-1412 RA Jiang N. and Wessler R.S.; RT "SZ-10LTR: LTR from Oryza sativa."; RL Repbase Reports 2(7), 72-72 (2002). XX DR [1] (Consensus) XX SQ Sequence 1412 BP; 464 A; 353 C; 261 G; 334 T; 0 other; tgaacgcgca aagatgtagc ctagaggggg gtgaataggc tttcctgaaa ttcacaaaca 60 aatcgcagcg ataaaattca gcaggaccag aacttccggg tgtggaacac cggaacttcc 120 gatctgctca gactgtccgg aacttccgaa gttctaaaca tcggaacttc cgagcaacaa 180 aaaaacctgt aaccctagca gacacttaaa ctaaattgca cgaaataaac tataggaaaa 240 cagagcagat acacaatcac agcatcgtgc acagaattat cacagaaaag acaagggcta 300 ttttttaccg aagttcagat cttgaaatcc tactctccat tgaggtgctc caaagagccg 360 gatctcaatt aaccccttgc cttacttgtg caaagaaccc agaagaagtc caaggctttc 420 aattcaacac tcctaggtca ttttctagaa tttgagtgat caccaagatc caactcacaa 480 atccttctag aaaagaccac aagtgcaagt tgctctaact aggagaacct ctaaaaactc 540 agcacaagaa tccttaatca cttacctcgt ttccttgtgg aggtgaggaa aaccttcaca 600 aactttcccg ggacatccac aagattttag aagctcgcgg gcgacaccta tccatctagg 660 agaagatctc caagagtaat aagccccaag tgatagccca caagatatcc aaagtgctca 720 accacaccta gtcttcaaag cttctccaaa tcactcctac actctcatct attctcacaa 780 tctcacaaga aatgctctaa attttgagtg gagaaagcca agggatcttg ggagaggcta 840 gaacaaccgt aggggatgaa aaaactaaag tggaatagcc aaaaggtgag ctgggtgcga 900 tctggatata tataacggct aggtgacgtc acctcgccgt tactcacatt tttgaactgg 960 aggaagtccg gaagttcctg accctcggaa cttccggcca acacttaggc aaaattcatc 1020 cagtgcaggg tccggaagtt ccaggtccag agaacggaac ttccagccag ccttctctgt 1080 ccggtctgga cccatttgca aaaatggctc ccaaaaatat tctatcatta ggaacccact 1140 aagatcactt tttatatctc agaaccccac ttggaacccc tcttaatagt acggattttc 1200 ctaaaactcg atttcaaaaa ataaactatc ttattgacct tcgagcttca aatccgcata 1260 aatgaagttt gtaggggggg tctccaagca tttcttgatc acctaagatc acctcgggac 1320 taattacctg agtatctcaa taaacacatt agtcccttaa ccttattcat cattaatcac 1380 caaaacccac tagaaggata aatgcaactt ca 1412 // ID RETRO2_LTR repbase; DNA; ORY; 1092 BP. XX AC . XX DT 19-MAY-2005 (Rel. 10.05, Created) DT 19-MAY-2005 (Rel. 10.05, Last updated, Version 1) XX DE Long terminal repeat of gypsy-like non-LTR retrotransposon RETRO2 DE - a consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; RETRO2_LTR. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-1092 RA Jurka J.; RT "A consensus sequence of gypsy-like LTR retrotransposon from rice RT sequence of gypsy-like non-LTR retrotransposon from rice."; RL Direct Submission to Repbase Update (19-MAY-2005). XX DR [1] (Consensus) XX SQ Sequence 1092 BP; 226 A; 319 C; 330 G; 217 T; 0 other; tgtcggtgac atgggaccgg gagtatcgtg actagaggct tgaggcagac gcaatcgccc 60 acgtggcctg gcaccctcgg gggacgtcgg gcccgagggt gatgtgtccg ccctcctcct 120 agtctccccg agggggtcgg gctgctcccg cctcggcccc gagggccgag gcgccccgac 180 cccctgtggg tgtttgctcc acgtgtatgg gttaggtgag cacagtgggg ctcacctacc 240 gcatttattg cggtttggcc gagcgtgtca cgccgcatgc aacgcagtgc agcgcgctcg 300 tttatccggt ctgtgaccag tcacagaccg gtcagatcgc gggttaggtg gccacaggcg 360 gtctgacaca cgcctcgccc cgtcccgtca ggacgagagc ctctaggcac tcgtccccag 420 ccggagctag cgtgttacct cctagagatg gcacgttagc cctggtcaga tatatgccag 480 gcttcatccc aaccattaca ggcaagatgt tgcatgaaga agggcggaca tgcagattgc 540 taaactgacg cgtggtggac aagaatgacc gatgtgactg gtctgactcc ggtcacgtca 600 tcagcagaca gccacgatcc cacgttgcat ctgcttccgg cgagagtggg ggtaggtgtg 660 ggccgtccca tcggagggtc attcggacgg caaccataca aatctccgtc catttatgaa 720 aaggtggggg aggtccccac aaaaaagagg gaaatggtgc atgtggtatc cccttaagat 780 ataaaaggag gaccttgccc accgagagag ggggtcttgg actgaacctt tccagattag 840 gaacccagaa caagggagag gctggctcat actttgtaac tttttcatac acagatccac 900 caaaacacag gagtagggta ttacgcttct cagcggcccg aacctgtata catcgcccgt 960 gtctcgtgtg cttcctgtct cgcgatcctt ccacatacag attgagagct tagaatctca 1020 cccagggccc ccggccgaac cggcaaaggg gggcctgcgc ggtctcccgg tgaggagccc 1080 cacgctccgt ca 1092 // ID SZ-6IN repbase; DNA; ORY; 4629 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE Rice copia-type retrotransposon SZ-6. XX KW LTR retrotransposon; COPIA superfamily; internal region; SZ-6IN. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-4629 RA Jiang N. and Wessler R.S.; RT "SZ-6IN: a copia-type retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 120-120 (2002). XX DR [1] (Consensus) XX SQ Sequence 4629 BP; 1183 A; 1090 C; 1476 G; 880 T; 0 other; cccgcccgca gtcgtagcag gaggagtacg aacacaaaga ctggaccgaa aattagtaaa 60 taactgaacc ggtaagccct tggtcatgat gttcgcgaac tggtgtgatg aaggaacgta 120 aagcacccgc acttgtccca aagccacctt ttcttggaca aaatgaatgt ccatctcgat 180 atgcttcgtc cgatgatgat gcacaggatt cgctgtcatg taaatagcac tcacattgtc 240 acaatagaca acagtacccg aagcaagtgg gacatgaagt ttctggagta gttgtcacaa 300 ccagcatcac tcggcaatgg catgggcaac agcacggtac tccgcctcag cactagagcg 360 ggagacagta gtctggcgct tggatgacca agagactaga ttgtcgccaa gaaagacaca 420 gtagccgaac gtagaacgat gagaattggg gcaacctacc caatccgcat cggagtatgc 480 cgtcagggac tgaagcgggc cagagtcgat gtggaggccg gaggagagac tgcccttcac 540 gtaccggagg atacgcatga ccaaggcgag atggagctct cacagatcat gcatgaagag 600 gcagacttgc tgaacggcgt aggccaaatc cagtcgagtc agcgtgaggt actgtagagc 660 accagcgatg cttctgtact ccgaagggtc gacgacaggc aggccgtctg tagcagagag 720 cttcgcacga gtgtccactg atgtcgaggt agagtggcac tcgaccatgc cgacctgctg 780 aagaagatcc acagcatact agcgctgcga gaggaagagg ctgtcggagg agcgtgtcac 840 ggagatgccg aggaagaagt ggaggtcacc aaggtttgtc atggcaaact cgaagtggag 900 gcgtgtcgta agttactgaa gtaatgtcgt ggtcgaagcg gtgaggataa tgtcatcgac 960 gtacagcaga agataggcaa tgtgatctcc atctttgtaa acaaagagag atgtattgga 1020 tgctgaaggc ataaaaccca tctgttgaat atacctagca aaccgctggt accatgcacg 1080 aggagcctgc ttgagaccgt acagggactt cggcaataga cagacagcat caggggcagc 1140 aggatcaaca aacccggagg gttgctgaca gtagacgatc tcctttaggt gaccatgaag 1200 aaatgtgttc ttcacatcta gctgatgaat cggccaagca cgggaggcag cgatgctgag 1260 aacaacccgt attgtggctg gcttgacaac cgggctaaat gtctcgtcgt agtcgatgtc 1320 gtgctgctgg gagtatccac ggactaccta acaagccttg tggcgggcaa gtgagccgtc 1380 agagtggaac ttgtgcttaa atatccactt gcccatcaca atgctggccc taggggggcg 1440 aggaatgaga cgccaagtgc tgttgtcgac caacaccttg tactcgtcgg ccatggcagt 1500 gcaccagttg ggatcagcca acacactgcg atagttggcc ggaacaggag aggcggtggc 1560 atgggtagct gtgtagatca gccggtcaac cggccgtagg gagccagtct gggagcatgt 1620 caccatggaa tgcggttgag gagcagcagc cacgtcaacc acatgggcgg aagacgatac 1680 cgggaccgtc ggagcaggcg acggctgtag acatgacgaa agggtgacac gatggtgccg 1740 cgtgggtggt accggccgat ggggcaacac cggtcgagga ggcgccgacc aacggtgtgc 1800 cagccgttgg ggcgcagctg gccgcggtga ctgtgtcgtc cggcaagcgt cggccgaaga 1860 ggggaatgta cggttgctca acctctgtgg agggagccac cgtatggggt cgcggtcgct 1920 caacctccga ggagggagcc accttgagag gtcgcggttg ctccacctcc gaggatggag 1980 tgaccgctag agggagtccc tgcagcaaaa aatcaaaaga cgaggcatta gggaaatcgt 2040 gattcatcaa aaacgatgtg gcgcgaaatg atgatacacc gagtggagag atcgagacat 2100 tggtatcact tgtgggaggc cgggtaccca agaaaaatgc aagctgtcga gtgaggggca 2160 agcttatgtg gagttgtggc actcaagttt gggtaacaaa gacagccaaa aacccaaagg 2220 tgggagtact ctggagtggt gcgatgtaga agctgaaaag gcagtgagtg gtgaacagag 2280 gaagagggtc tccggttgag aaggtaggtg gcggtagcga gagcctcagc ctagtacgac 2340 ggaggcatgg aagcctatat aagaagcgtg ctatggagtt gttgatggtg cggagcatcc 2400 gttcggcttt tccattttgg gaggaggtgt aagggcaaga gagtcgttgc tgggtgccac 2460 ggctggccag aaaggtagta gtggcggtat tgatgaactc tcagctatta tcagcttgaa 2520 gggattctag tggtaggcca aactgggtgg aaacatactc ggcaaattca acaatatgac 2580 gatgaacatc atatttgtgt cgaagcggga aggtccaaca gaaatgactg aaatcatcaa 2640 gcaccactaa gtaatattta aaacctgaag tactcaacac cggagaggtc cacacatcgc 2700 aatggacaag ctcaaaggga acaaaagtgc aagaggatga cctaacaaaa ggtaatctgg 2760 tatgcttccc taactgacac gcatgacata gagaggtgtc gattttatta taggaaatgg 2820 agtgcatatt ccgaagaatg tggcggccga accaagatga cccagatgac ggtgccaaag 2880 agtggaggaa gtggtgagga agcagtgggc ggcgctggag ggagtggcag ctggaagagt 2940 gtagagttcc ccgtggctat tgcaacgaag aatcacgcgc cgggtctgaa ggtccttaat 3000 agagaaacca aattcatcaa actcaatgga acatttattg tcgcaagtaa actaacgaac 3060 agaaagtaaa ttacgaacta aggaaggggt gataaggatg tttttgagtg caaatttggt 3120 ggttcctatg ggaaggaatg atatgccacg acaaataacg gggatagttt gaacatttcc 3180 aaaagtaata aaggtgtggg agttaggcaa gcaagttacg aggataccgt cagtggagga 3240 catatgagat tcgcgccagt gtccaaaacc cagttatttg tactttagaa tgccatctag 3300 ttcaaggctg caatgaggct agcctgctcc caattgggct agcctgtaga tggcccagcg 3360 aaggtggctt gtgcctggga atagtgggcc accggagccg gcccaagaag accagctgag 3420 gggagaaggg gggggggggg ggcgccaggc cagttgctgg gccggccaag ggttaaagca 3480 aacccaaggc ccagccggcc gccagctagg gtttccctgg ccgccaccac ccccagccca 3540 gccgccgcca ccaccccctc cagaggagcc gcgtgcgccg cctccacccc cactgccgcc 3600 tcccccattc ccgcctccgg tccagccgcc gccgccgccg ctgtcggtca agccaccgcc 3660 actgcggccg ccgttgccat tgcagttgcg gcggttgttg gtgccgccac cgcggccgcc 3720 agaggagccg ccgcctccag tccagccgcc gacaccactc ccaccgtcgc gtgcgctgcc 3780 actgccccca cctctagaga ggccgccgcc accggaagag gcgttgccgc cgagagggca 3840 agaggagcca gaggtggcgc ttgcaaccag cgctgtcgcc gcggccacct tggccgcgtt 3900 cgtgatgcgc agctccttca acaggagggt gttgcatgcc gatgtgaagc tcaggaggac 3960 gtccgtagct gcgatgttgt cggcggtgtt ggagaagtcg tcattgaggc ctcgaagaag 4020 gttgaggacg agttgggact cagagacggc gtggccgaca tcgcgaaggg cgtcagtggc 4080 agtcttcatc ttctggcagt agtcgacaat ggaggaatcg ccttgaatca tggagtgaaa 4140 ttgatggctg agaaagatcg ctcgaggctg tttgttggcg tggaacatgt cctcgatggc 4200 gacccacagc tcccgagtgg tctaatctgg ctccagaggt cgtggatgtc gtcggcgact 4260 gatccaaaga tccagttgcg gatgtaacag tcagcctgtt cctaggctgg gtcgttggga 4320 cgtggagggg cggagccgtc gatgtgagcc atcaactcaa acttgccgca cagggaggtg 4380 aagaaggcct tccatttgtt gtagattggg tgggtgttct ccagggtgat ggggaagtgg 4440 gatttgacgg cgactgtggc ataggggtgg aggaactcac tggtggtgct ggcagaggaa 4500 acaccactgg agcctgagga ggtggaggat tgagttgatt cagtcgacat ggccagcact 4560 cgccgaggag gcagctgtga tgacagcgtg ctagagcagc ggaaaagaag gtaagaacct 4620 ctgatacca 4629 // ID SC-9 repbase; DNA; ORY; 5282 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 04-AUG-2002 (Rel. 7.07, Last updated, Version 1) XX DE Rice copia-type retrotransposon SC-9. XX KW Copia; LTR Retrotransposon; Transposable Element; KW COPIA superfamily; SC-4; SC-9. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-5282 RA Jiang N. and Wessler R.S.; RT "SC-9: a copia-type retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 41-41 (2002). XX DR [1] (Consensus) XX CC SC-9 is a Copia-type retrotransposon. It has 476bp LTRs. CC Related to SC-4. XX SQ Sequence 5282 BP; 1226 A; 1156 C; 1642 G; 1258 T; 0 other; tgttgagttt gttattacag ctgtggcccc aacgtgttcc tggtgattgc agttgcaacg 60 gttgaaggaa taagtctgtg tttgttagta gatgcgaatg atgcggtgat cgagtcagaa 120 gaagaccgcg tcggtagcat tcatgtgcgt gagtttagcg tgggtgcgtg agtcgtcgaa 180 ttcagagaaa agcggatcgt gggatggcac gatttgagcc tcggattctt tcttttgtgt 240 ggagtacaag taggagtttt tgtactgtta ttcgagttgc atgttactct gttcagtgaa 300 tgaaaaccac agaaaattag cgccacaaat ttcctatctg ctattgttct cagaaacttc 360 tcaatttcct gtgttcttgt tctgctctgt attcctctga atctcgttcg ttgccgtgcc 420 ggattgctgc agtacgcatg caaggtgttc gatcgagggt ctagcgctaa caagtggtat 480 cagagcaccc aggtttgagg gctggtctga caccatggcg ttggttccgg caacgtcgga 540 tccagcgagg gggagctcgg ggagcgcttt cttgtatcca caactcacgg ccaccaacta 600 cactagttgg gtgatccgtg tccaggcgat gatggaggac cagggtgtgt gggaggtgat 660 tgaaccggcg gccagggcgg ccgtcgaccc tcagaaggac aagaaagcgg agtcgcacct 720 gctacagtcg ctgccagagg atctcctcat gcaggtggca aagaaatgat tggcgaagga 780 agtatgggat tgtctcaaga caagattcgt gggtgctgat cgagtgcgtg acgcgcggct 840 gcagacgctg aagggcgaat tcggcgccat ggtgatggag ccgggggaaa ccctggatca 900 gtacgtaggc cgcatcacca cgatgagcgt gcgccactca gcgttgggct cgacgttgag 960 tgatgccgcg atggtgaaga agttgttcga cacggtgccg gagaaattcg tcagccttgt 1020 cacaggtatt gagcagtttt ataatgttga tgacatgcca tttgaagaag ctgcgggccg 1080 gcttaaggct tacgaggaac gggtgcgtaa gaagaaggca gcggccggcg gagtcaccac 1140 cgacgggcag gttcttctca ctcaggctga gtgggaggcg cggttcaaga aggatgtcgg 1200 ggagtcatcg tcgccccaga aagggaaagc ttccggagag ggagctaaag gcggccaaag 1260 cggtcgcgga cgcgggcgag gccgtggcgc aggtgggcgc ggtggcgccg ctcgcggcaa 1320 ctctgcaagt ggctcaggca gcggtggccg tgacaagagc cacatcaaat gcttcaactg 1380 cgaggagtat ggtcactatt ccaaccagtg tccgcaccca aagaagaaga aaggagaagc 1440 acactttgcc cagatcgagg acgccggcgc cgcgctgctg cttgcggtga ctgagaacgc 1500 gccggtgcaa gcgacgcagg agatgtttgt gcatgaggat cgtgtatggc caaagttgct 1560 gctggctgat ggtggcgcgg tggctggaaa cgtctggtat ataggacaac ggcgctagca 1620 accacatgac cggagatcgc aagaaattca gagagctaga tgaatcaata actggcagca 1680 tcaggtttgg ggatgcatcg tcggtgcaga tcaaagggaa gggatctgtt ctcttttctt 1740 gcaagaatgg tgaccagtgg cttctccagg acgtgtacta cattcctagc ctctgttgca 1800 acatggtgag cttggggcaa ctcactgaaa cagggcatcg agtggtgatg gacgaggatg 1860 tcctcgaggt gttcgacaag tgtccttggc gactggtgat gaaggtgagg cataccacaa 1920 atcgtctcta ccggatcgag ctcaaccttg cccatccagt gtccctgcta tccagccttg 1980 atgatccggc atggctgtgg catgcacgtt tggggcatgt gaatttccaa gcgatgaagc 2040 tgttggtgga caaaggcatg gaggtggacg taccggccat cgttcaccca aatcagcttt 2100 gtcaggcgtg cttggtggcg aagcaaatca gggcgtcctt ccctgtggtg gcgaactaca 2160 gggcggagga accattggag ctcattcaca ttgatctgtg cgggccgatc tcgccggcga 2220 cgatggctgg taacaagtat tttgttttaa tcattgatga cttcacacgg tggatgtggg 2280 tgtttgtgat taaatccaag gatcaagcag tggaggcctt caccaagttt caaacccctg 2340 gccgagaacg tggccgggtg gcgcatcaag acgctgaggt cggatcgtgg cggcgagttc 2400 ctgtccggcg agtttgcaca ggtgtgcgaa tcggctggca tccagtggca tctcactgcg 2460 ccgtactcgc cgcaacagaa cggggtggtg gagcgccaga acagatcagt gatggcgatg 2520 gcgcgctccc tcttgaaagg gatgagtgta ccaggcagac tttgggggga ggcggtgcgc 2580 tacgcggtgt acatcctcaa tcggctacca accaaggcga tgggtaatcg tactccatac 2640 gaggcgtgga cggggaagaa gccacatttg gcacacttgt gtgtgttcgg gtgtactaca 2700 catgcgaaga tcacaacgcc acatcttaag aagctggacg accggagtgc accgtatgtg 2760 tacttggggg tggaagaagg gagcaaggcg caccagctgt tcgatccacg tcgcggtcgc 2820 atccacgtaa gtcgtgatgt catatttgaa gaaaatgttg tttggcagtg gcttggagat 2880 gcaggcgagc aagtctccgt tgaatttgat gttgaagaaa tcgttgagcc accagccggc 2940 tcggcgacat cgctgccagg cgcgataccg aggtaccagg cgccatcacc cggcaaccgt 3000 cctggcaagg agctggtggt ggtagaagag gaagcttcct ctctggcagg cacgatggag 3060 gcgtcaccgt cactgccgac cactcctgct atgcctatcg gtgaacagag tacaccgcac 3120 tctgctggcg aaattgacac cgatggtgct cctgttcggt acaggcacat tgccgatatt 3180 atgagagatg cgcccagggt ggacttggtt gacgatgaac aagatggtga ggcatttctt 3240 gcagagatgg aggagccgtc agcttaccgt gaagcagccg gtcacccggc gtgggaggac 3300 gccatggcta tggagatgga tgccattgag tgcaacggga cgtgggaact caccacgttg 3360 ccagctggcc acagggcaat tgggcttaag tgggtttata aactcaagaa gaacactgcg 3420 ggagaagtga tcaaacacaa ggctcggttg gtggcaaaag gatatgtgta gagacaagaa 3480 gtcgatttcg atgaagtctt tgcaccggtg gcaagacttg atacagcaag agttgttctt 3540 gctctagcag ctgatcgccg gtggcaggtc caccaccttg atgtcaagtc agcctttctt 3600 aatggcgagc tagaagagga ggtatatgtt gcacagccag aaggttttgt caagcaaggc 3660 agagagcatc tcgtgctcag gttgaacaag gcattatatg aactccggca ggcgccgtga 3720 gcctggaaca ttcgcctaga tagatgtccg aaacagctcg gttttgagcg gtgcacgcag 3780 gagcaggctg tgtatactcg gggcacaggc agtggtggtg tcatcgttgg cgtctatgtc 3840 gacaatctga ttgtgactgg tgaaaatcct gttgaattga agatgttcaa ggaacaaatg 3900 atgggggagt tcgagatgag tgatctcggt ctgctctcat tctacctcgg gattgaagtt 3960 gatcagggag aaaatggaac cacgctgaag caaacttcct atgccagaaa agtgctttct 4020 tagttcggga tgctggagtg taattcaacc tcaattccga ttgatccaag gatgcagctg 4080 aacaaagacg cagatggtca cccggtggat gcaactgagt atcagcgagt gatcggttgt 4140 cttcgatatc tgttacacac aaggccagat ctttcctttg ctgttggagt ggcaagcaga 4200 tttatggagc ggccaactct tatgcacttc aaagcagtga aacaaattct cagatatctg 4260 aaaggtacaa ttgattgtgg ccttgtgtat gcagctagaa atggtgatat gcagattact 4320 gggtatacag acagcgacct cgctgggaat gttgatgacc gccggagcac gggtggtatg 4380 gcgttctaca tcaatggcag tttggttgct tggagctcgc agaaacaaaa gaccgtggcg 4440 ctgtcgtcgt gtgaagctga gtttatggcg gccacggcag cagcttgtca tgcgctttgg 4500 ctaagagcac tgctggttga gattgttgga ggaccgacga aggtggttaa gctgtttgtg 4560 gataacaaat catcgattgc tctcatgaag aatccagtgt ttcatgggag aagcaagcac 4620 attgatacac gatatcactt cattcgtgag tgttttgatg gagggcaagt ggttattgag 4680 tttgtccgga ctgaggaaca gcgagtagac gctctgacaa aaggtttgcc ggcggcgaag 4740 ctggcgacgg cccggcacct tcttggtgtt cgttttcttg ggccacagca taattaaggg 4800 ggagattgtt gagtttgtta tttcagctgt ggccccaacg tgttcctggt gattgcagtt 4860 gcaacggttg aaggaataag tctgcgtttg ttaattagca gatgcgaatg atgcggtgat 4920 cgagtcagaa gaagaccgcg tcggtagcat tcgtgtgcgt gagtttagcg cgggtgcgtg 4980 agtcgtcaaa ttcagagaaa agcggatcgt gggatggcac gatttgagcc tcggattctt 5040 tcttttgtgt ggagtataag taggagtttt tgtactgtta ttcgagttgc atgttactct 5100 gttcagtgaa tgaaaaccac agaaaattag ccccacaaat ttcctatctg ctattgttct 5160 ctgaaacttc tcaatttcct gtgttcttgt tctgctctgt attcctctga atctcgttcg 5220 ttgccgtgcc ggattgctgc agtacacatg caaggtgttc gatcgagggt ctagcgctaa 5280 ca 5282 // ID SZ-44LTR repbase; DNA; ORY; 1408 BP. XX AC . XX DT 13-SEP-2002 (Rel. 7.08, Created) DT 13-SEP-2002 (Rel. 7.08, Last updated, Version 1) XX DE Rice long terminal repeat SZ-44LTR. XX KW LTR Retrotransposon; Transposable Element; Long terminal repeat; KW SZ-44LTR; retrotransposon. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-1408 RA Jiang N. and Wessler R.S.; RT "SZ-44LTR: LTR from Oryza sativa."; RL Repbase Reports 2(8), 49-49 (2002). XX DR [1] (Consensus) XX CC Insertion in SZ-6. XX SQ Sequence 1408 BP; 484 A; 288 C; 298 G; 338 T; 0 other; tgttgacgaa aaaatcgaac acactggcct gggagatctg cttagctcca atgcaggtcc 60 aaatatgatg agatgcgggc gtgccagtca gtttgaccct acaacagaca agatatgtaa 120 acagtagatt aaatagccga tcggctgaca agccgatgga gtagttccag ccgatagtga 180 taatagccga tgccgatacc agccgatagt gatagggttt aagcaatcgg ctatatgtcc 240 aatgtagata atgatataaa ggcaatcagc tgatgatgat gatgtaataa aataacaata 300 taatccagta taaaccaatc ggctagcaat gatgtgataa ataagcaccg atccgaaggt 360 taaagcacac atcggctaga ggtccgatgt catgaaatcc acaagattag attaaacagt 420 gaaacctttg ttgttatcgg ctaaatctaa cttatatgta tatgcaatcc ttatgagccg 480 atgcaacgtc cagataactc accggctgaa accccgatga aacccttatt ggcaatcaag 540 aagaaggcta gagattatgg ttctaagcac gacttagtag atcaaacata actgatgcag 600 cactaagtat gaaaagaaac ataatatctg gacaatcaag ccgttgactg agttttcagg 660 gtggtagatg tctaagctaa tctaatctag caacgcgatt tagccgatac cggcagaaac 720 cctaaagcga gaagcagcca atagagctaa attgatatgc taagactaga ttaatagaga 780 catatgataa ataggtaggc aaatatatca tccaaaccag agcaatccaa gaggtcgaat 840 gtactgatgc agccttgaac gacgccgacg tagatgatac aattgcctgg gctgacggaa 900 cattggactt accccttcat cggagatcga acaccgatgc agccccgcgt caggtgccaa 960 gtcccgccgg acgataaaat aaagtagaaa aggtaaaagg tggcgatgcg ccgaattgta 1020 ttgatcgtag cgatagatta catagacccc ggctgtacat atttataccc atgggttgat 1080 acaagtcctt gtcggataag aaagaaactt tcctaatgat gaaaggaaaa gataaagtcc 1140 tgataggaca ctaaacacac tttcctaaag ataaaaggaa actaacaaac tattcctaat 1200 taatagataa cttgccatgc tgcattctct ttgaactcgg tctcttctgg ataagcttct 1260 tttagtagat caatttcctt aaccgaatat agcaagaatc cgacaactga cgacttgaga 1320 actctcatcg gctaatctca ggacttcgaa gtcgatgctg actctaagcc gataactact 1380 ctgggcttac caaatttcac tgttaaca 1408 // ID SZ-57 repbase; DNA; ORY; 3699 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 04-AUG-2002 (Rel. 7.07, Last updated, Version 1) XX DE Rice retrotransposon SZ-57, incomplete sequence. XX KW LTR Retrotransposon; Transposable Element; SZ-17; SZ-57. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-3699 RA Jiang N. and Wessler R.S.; RT "SZ-57: a retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 111-111 (2002). XX DR [1] (Consensus) XX CC SZ-57 has 176bp LTRs. Internal region is related to SZ-17. CC Incomplete sequencing PPT, very homogenous. XX SQ Sequence 3699 BP; 674 A; 1180 C; 836 G; 958 T; 51 other; tgttagatag atatatatct tgtgcatgtt tgtttccttt tgtgccgatc cctcctaatg 60 tctctcccga ttctgtttct ataagtcggt tgagtggata agggaggttt cgagcctata 120 tgtactccgc acccgatatc aatccaatct attgtgttga gtctatcgcg ctctcatggt 180 atcagattcc ttgttttcct gcttctgcta tctaacctaa tcgatctctg tgctgcacct 240 cgccgccatg tngacgacgt cctcctctgc gcatgacgac ctcatcaaca ctatcgtcaa 300 tgccgttgcc gacgccgtgc gcgccaacta ccaggcgccg ccaggtctcc agattgatcc 360 caccaccgtc cagacggttg ccgagtccgc agccaccaag gcgtcttccg ccgtccgcga 420 cgctctcgtc aagcatctgc cgccgccggc cgaggaagcc caatcgccga cgtccatgcc 480 gccggcgatc ccgccgatct cgaccacgcc gagcggccct ctgccgccgg agttgatggc 540 tctgttcgcc cggctcgcca tcctggcctc cagcgcgact ggcgcgtcca tcgcgccctc 600 gtcctccggc gccgcaccac cgcctcctct ggacgctgag acgcgtacta ctctccacgc 660 ccaagcagtt gctgtgctca atgtcaaggc tctcgtcccc gtgacattag acctcgtcgc 720 cggcaactat gctcgatgtc attctagatg atttctctca ctatgtatgg accttcccac 780 ttcgttttaa atccgatacc tttgccacct tatcacgctt ttttgccttt gtgaagactc 840 aatttgcagc tagcatccgg aacatccagt gtgaaaacgg tcgtgagttt gacaactcta 900 ccgcccgcac ctttttcctc accaacggtg tctccttgcg gatgtcgtgc ccccacacct 960 cccctcagaa tggtaaggcc gagcgcatgc tacgttctct caataacata gttcgctccc 1020 tgctgtttca agctagccta ccaccttctt tttgggtcga ggccctccat actgccacac 1080 atctcattaa tcgtcatccc accaaaaccc ttcatcacca caccccgttt tttgccctct 1140 atggtgctca cccatcctac acacaccttc gagtctttgg atgcaagtgt tacccaaact 1200 tatctgccac taccccccat aagcttgccc ctcgctccat catgtgtgtg tttttaggat 1260 atcccgagaa tcacaaaggg taccggtgtt ttgatcctgt ctccaatagg gtctatattt 1320 cacatcatgt ggtgtttgat gagcactcgt ttccttttgc tgagatgact aacagtgcag 1380 atgctcctaa tttggacttt cttgaggatt tttcatctcc tctgccagct cccatcggtc 1440 gacgcatagg cagcagctcc agccggccgg ctggaacacc ccctgggccg cgtgcctccg 1500 tcggcacgcc atccggctcg gctaggcagg cgtccccggc ctcttcacca gctcggccca 1560 cagaggctgg gccttcctcc gctggaccgg gcgcttggga ccccatgctg tccccccggt 1620 ccacccattc ggcggccccc tccaacaccg gctcctccaa cgagccgccc ctgtcgaccg 1680 gcctagctcc caccacaggt gcgtcttccc tgcggcctcc accgacaggc gcgcccacgc 1740 gccctcgcag cgcgcgagtc cctggcggcc gcgctcctcc accgatcctc gatgcttctc 1800 cggccgacaa tgaacatgcc atggtcacgc gtggcaaatc tggcatacga cgaccgatcg 1860 atcgcctcaa cctccacgcc gcacccttgt cgccggtgcc tcgcacctat cgtgcggcct 1920 tggcggaccc ccattggtgc actgctatgg aagaggagta caatgctctt ctcgccaacc 1980 ggatgtggga cttagttcct cgtccacccg gcgtcaacgt cgtcaccggc aaatggatct 2040 tccgccacaa gttccaggcc gacgggtctc tcgacaggta caaggctcgc tgggtcttgt 2100 gtgggttcac tcagcgtcct ggcattgact ttgatgagac attcagtccg gtcgtgaagc 2160 cggccannnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnccgg 2220 tcgtgaagcc ggccaccgtt cgcatcgtgc tgagtcttgc agtctccaag gactggccca 2280 tccatcaact tgatgtgaag aatgccttcc ttcatggtac tctccaggaa actgtttact 2340 gctctcagcc tgctggtttc attgatccta ccaaacccga catgatctgc cgcctcaaca 2400 agtccctgta tggtttgaag caagcgcctc gtgcatggta cagccggttt gccagtttct 2460 tactcacact tggcttctct gaggctcggt cggacacatc attgtttatc tatcatcgtg 2520 gttccgatgt ggtctatctc ctgctatatg tcgatgatat tgtgctcaca gcctcctctg 2580 acagtcttct tcgttggaca atttccgcct tgcaagctga attctccatg aaggacctca 2640 ggcctctcca ccacttcctt ggaatcagtg ttacccgcac atccactggt ttgttcctca 2700 gccagcaaca gtacattctt gatgttcttg ctcgtgctgg catgtccgag tgcaagccat 2760 gttctacgcc ggtcgacact aatgccaagc tctcagctgt cgatggtgcc ccagttgctg 2820 acctgactga ttacaggagc ctcgctggtg cattacaata tctcactttc accaggccag 2880 atatatccta tgctgtccag caaatctgcc ttcacatgca tgacccccgg gagccgcacc 2940 ttgccgctct caagcgtata cttcgctaca ctcagggcac catcgatcat ggattgcatt 3000 ttcagcgctc tcgaactgtt gacttggttg cttattctga tgctgattgg gccggttgtc 3060 ccgacacgag gaagtccacc tcgggctatg ccgtgtttct tggtgccaac ctgatttctt 3120 ggtcctccaa gcgacaagcg acagaacaca gtctcccgtt ccagcgccga agcagagtac 3180 cgagccgtgg ccaacgccgt ggcggaaaca tgttggcttc gccagttatt gcacgagtta 3240 catactccac cctccaaagc tatggttgtc tattgtgata atgtcagcgc tgtctacctt 3300 tctacaaatc cagtacaaca tcaacggact aagcacattg agatcgatct tcactttgtt 3360 cgtgatcgtg ttgcggctgg agttgttcgt gtccttcatg tgccaaccac atcgcaatat 3420 gctgatatct tcaccaaagg gctgccgaca tctgtcttca cggaatttcg ttctagtctc 3480 aatgttcgct ccagcgccgt tgcgactgcg gggggggggg gggtgttaga tagatatata 3540 tcttgtgcat gtttgtttcc ttttgtgccg atccctccta atgtctctcc cgattctgtt 3600 tctataagtc ggttgagtgg ataagggagg tttcgagcct atatgtactc cgcacccgat 3660 atcaatccaa tctattgtgt tgagtctatc gcgctctca 3699 // ID RCB11 repbase; DNA; ORY; 13978 BP. XX AC AB013613; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Oryza sativa centromere repetitive sequence RCB11. XX KW RCB11; Rpetitive sequence; centromere. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-13978 RA Nonomura I.K. and Kurata N.; RT "Organization of the 1.9-kb repeat unit RCE1 in the centromeric RT region of rice chromosomes."; RL Mol. Gen. Genet 261(1), 1-10 (1999). XX DR Genbank; AB013613; Positions 1 13978. XX CC misc_feature 1..13978 CC /note="centromere sequence RCB11" CC repeat_unit 159..2051 CC /note="1.9 kb direct repeat RCE1 (RCE1-1)" CC /rpt_type=direct CC repeat_unit 7186..7975 CC /note="1.1 kb deletion CC 1.9 kb direct repeat RCE1 (RCE1-2)" CC /rpt_type=direct CC repeat_unit 9685..11593 CC /note="1.9 kb direct repeat RCE1 (RCE1-3)" CC /rpt_type=direct. XX SQ Sequence 13978 BP; 3898 A; 2841 C; 3440 G; 3799 T; 0 other; ggatcctcgt gcttacatta attgggagct agcggttgat agtgaatttc aaaagcatgt 60 cttgtcggag aaacaaaagg ttatgtgtgc ctctagtgtt ttaattaaac atgcttctaa 120 tgattggaaa catctttgta ggcataacaa aataccacaa tcttggaaag acctgaaacg 180 atatttcaga gatgtttatg ttcccatgta ttatgctgac attttgttca acaaactgca 240 atgtttaaaa caagatacca gaactgttac ttcatactat catgatatgc aagcttgttt 300 attacgttgt ggtttagatg aatgcgaaga agctaaagaa ttgaggtttt tatgtgggct 360 taacaaagaa attcaggaca tgcttgattg tcaaagatat acatctcttt ctcatttgtt 420 acaacttgct tgcaatgctg aaagtaaaat agaggaggac atgaagaagc aacatgctat 480 gtttttgtct tctattacta accatttgca ggaagtgcat aatcatgaaa aggaggagag 540 agacatgaaa gagccgccag tcccattgat cacactcaaa gtcgaggcac ctccattatc 600 taaagagggc atcaaaggta aacttaatgg tgctgaaatt aataaaggtg agtgtgttgt 660 taatgaattg aatttgtcca cttttcatgc tatagcagag caaccattag tggaaccaac 720 tgctgagatt cctttgtcac aaattgattt gtttgctgtt ccttgtgata aagaagagtt 780 atgcgataat gcttcactta tatccatgcc acaacttgtg aatgaacatg ctattcctac 840 tgttaattca tactgcactg attttaagca tgttgttcac attgctaatg aagtagagga 900 gcgtgaattg agatcttctt taaatacttt gggctatgtt cagtttgatg atttttgtga 960 gctcgataat ttcaaggaga aattatttgc taagtctgat ttgccatatc caaccaatgt 1020 tatatttcac atctttggtg aatataatga tcttggaata tattttgtgc atagagttta 1080 catctgctcg gatttagaac ctcctgtaca tgtggataaa atatgcaagc tagagaaaaa 1140 tgttattgct aaccaaattg tctcgagttt gccttgtttt gattggaaga aacaggttgt 1200 tgtaaatgga ctacgcaaag agcaccatat ggaaaaaccg aggacggttt tccgtgaaga 1260 aggagaggat gatctgacca tggctaccac ggatgcaacc attgctcaca tcatggatga 1320 acaagaagat atcgagatca agtactccaa gtgctggaat ccgattcggc cacctactac 1380 actgctgact tcaaacggcc accgaatctg catacgacct ccgttttcgg cccgtgagta 1440 cttgatggaa agctctcgga gccctctttc taacggatcc agcctcttct ctgaattcta 1500 tctcgtgtgg ccagaatcac aggaacaagg tgttgcatca cctataatgg gcctatgggc 1560 ttgtaacttc atttgggacc ccggcccagg tggggcccat gtggggtgcg ccccaagctg 1620 gtggagcacg accctaggca cccaccccta tatatagcta gttacccctt cagggtttct 1680 cgggtttttg ttagattaaa gtttagccat tcctacttac ttgcagcgcg cgtgtcggct 1740 agaccgtccg tctgcttgtt cttcggaacc ccaacttatc atttgtatta aattcctatt 1800 tgcaatatca gattgctttt atcttgttct tgcttgtttc tttgatttgc ttgcaggaat 1860 agggttgatc tgcaccggca agatcagcaa cccacggaga ggtgtatcga tcgctaaggc 1920 gcaacacaac gtctcgtacg gttgtagtcg gatcgtcaac gtttctccca aatcgtagtt 1980 atcacaactc accgaaagat cgggccaaca atagccttga gtgtcgagag gaactcaggg 2040 ttcatcactt tgtctaggca ctatacttta ttgtcccaac ttgattgtcg gatttttgga 2100 cttgaatcaa ttaaagaaca atatgcgctt catcctgatt ttaatgaagt gatgttaaat 2160 tgcaaagagg gacgtacttg gaacaaattt gtgatcaatg gtgcatttgt ttatagagct 2220 aaccgtctat gcattccagt tggttccgtt cgtcttttgt tgatacagga agcgcatgga 2280 ggagggttga tgggacattt tggagctaag aagatggaag atgttttggc cttgcatttc 2340 ttttgaccaa ggatgagaaa agatgttgag aggttcgtgg cacgttgcac cacttgtcag 2400 aaagctcagt ctcgtttgaa tccacatggt ttgtatatgc ctcttcctgt accttctatt 2460 ccttgggcat atatttctat ggactttatt ttgggattgc ctagaactaa gagggggagg 2520 gatagcattt ttgttgtggt gaatcgtttt tctaagatgg cacattttat accatgtcat 2580 aaaagtgatg atgatgttca tattgctgat ctgtttttcc atgagattgt tcgcttgcat 2640 ggtatgcctt ctactattgt ttcagatcgt gatgcaaaat tcttaagtca tttttggtgc 2700 acgctatgga acaagttggg tacaaagcta ttgttttcta caacatgtca ccgacaaaca 2760 gatggacaaa cggaggtaat caaccgcact ttgggtacca tgttgagggc tattttgaag 2820 aaaaaattga tgatgtggga agaatgtttg cctcatgtgg agcttgcata gagtcgggca 2880 acacattcta ctaccaagtt aagtcctttt caggtagtgt atggtttcaa ccctaatgct 2940 cctattgata ttttgccttt acctactagt gagagggttc ataatgatgc taaggcacgc 3000 gctgaattta ttttgaaaat gcatgagtca accaagctca acattgaaaa gatgactgaa 3060 aagtatagaa ttgctgatag taaaggtagg caagaggtta agcttgaacc gggtggttta 3120 gtttggttgc acttgagaaa ggatagattt ccggaattga gaaagtctaa gttgatgcct 3180 cgtgctgatg gtccttttaa aattgttgag aagatgaatg ataatgcata taaacttgag 3240 ttgcctcccg agtttggggt tagtcccacg tttaacattt cagatttgaa gccatacttg 3300 ggagaagagg atgagcttga gtcgaggatg acttcaattc aagaggggga ggatgatgcg 3360 aacatcacta cctcggatac acacatcaat cctccaacgg tcattcaagg accgataaca 3420 agtgctcgtg tgcgacaatt aaatttagag gtgagctcgt tcctatgttc ttctttgtat 3480 gaattcgaga atagattgct acctaatgat tatattgtga ttaggaacaa tggaggggac 3540 aaggtgtcgc aactgagaaa attacctttt cccgaacgct agtgtattaa tccccgtccc 3600 aggaaaagcc ggggtacacc acacaaacat gatacaaaag gcacatcttt attatatcga 3660 taatatttac attattacaa aggcacttca ggcctgacat ataaaaataa atagcagcgg 3720 actagcggcc tacggctcca tcttcacagg cgctcaactg gggtataagc cagaactcca 3780 cctaggactt cttctccaaa gcttctctta ctgaaggggg gggggaaaga tagagcaaga 3840 atgagtacaa ccacagtact cagcaagcca caccggtaga tgcatgatta atgcaagggg 3900 gtacaagggg taataatata ggggttaaat tttgcagtaa acagcattta aaagacacgt 3960 agttgctcaa agctactttg tacacacgat cctagagcta cacaatattt attaaacaag 4020 gccgtgaacc cacacgaacc cgccttaacc caaggcctac aatgattcag accgaactgg 4080 caacccgacc ctgggtccca gctcgtccca agccaaccca ggccaaccat tccacatttt 4140 agttgttaag caggttttaa gaattaaaac actaacttgg gtacattgct aggcttgccc 4200 atatccgagg gcgcggctat tcgaatagat ttactctgat cagaggtgta catctttacc 4260 cacaagacac atcttcctca cgtgtaacca cgtgccacat accaccacgg catacggacg 4320 aaagacgtga catagttccc aacccatcct agccataaac aagagtatcg acccaacccc 4380 ctacggccag aacccccggg ataggtaggt aggattgagc ccctagcagc aggacaccag 4440 ccctgtgcca tgacatctcg actaccggga cgcagctcgt gtagccttca tctatcctag 4500 agatgtccat cgacccccga attcgtcaat ctccatccgt gtacctttgt ttataaccag 4560 actgagccac aaactgagcc ttacccacta gatatgtgga agtacggtag tgctttgcaa 4620 cagaggcccg agcttaatcc ttatagtggc cggggtgcta cttcccacaa ctggcatgca 4680 cccaaacccc accggaaaac aggttttagg ggttttgaaa gaggaagaga ggtgtatgtc 4740 ctattccacc ataatccaac cattccaaag tgtccaagtg atatgagaat tcccaaagtc 4800 taaagttata aaaccaccta atgttgccta attaaccagc gcagcatcta cctaagttca 4860 tactagtgga accataaata gagtacccac tagttggggt tttattttcc tagggtgaac 4920 aaggtaataa taacaatagc aataataata aggccataag aaaggtaaat aggcatggct 4980 aaataaaaca gtgataacgc gggaatttac ataaagcgat aatgcattaa tttaaatcaa 5040 aataatttta taaactggga ttcaatatgc tcaaggatga tgtgacttgc cttgctcaaa 5100 gagaatggcc ttccgaactt cggcgatgac cacgaaccac gcttcgggaa cctccagaac 5160 gacgaaagta cgcgaagcac acaagcaaag ctacaagcct ataaagaagc aataacaata 5220 cataaaaaga aagcacatgg ttctttaggt tataacaaac attaggagac ttgaacgggt 5280 cgattcggag ttcgtatgac caagatatga tcatccgaag tttaatgctg ttacatggag 5340 atttacggat tattataatt aggttttaca actataaaac atgtgaaagc gctagcctgg 5400 aaaagacagg aaggctgtgc tgttgacatg cggaccccac atgtcaacct aaaggaccac 5460 ggtagaccga gtacacggag acggtctacg ggtcgacgga agcagacgct gtgtgtcaac 5520 cgaggcgagt ggccgacaaa cggactccac tagacaccac gcgggctgca cacgtggaaa 5580 caacgcggct accgagcggg cacactaaca cggtcaccac acgcacacac gaacgactac 5640 cgacaccggt acacgggtac cggggccgac aaccgcacaa cgggcacggg cgacaccgaa 5700 aggacgagga cggggcagcg agggagaggg atccttacca ccatgcgacg aggcgtggga 5760 acgacaacga cgaacgggcg cggcggagac ggacgagaac gacggagacg aacggcgagg 5820 ggacgacttc ggcggcgatc cttggacgaa ggcgagacgc ggccggcaca aggcttgacg 5880 acgcggagcc gaggacgaag acgagaacgg cttgacggag ggacgaacac cacgatgatg 5940 aggacgacga ccgggaccgg cgaggaggcg acgagggcag ccggcagcag ctgcacggag 6000 acgaggacgg cgtgggacac gacggaggtg gcacaacgag atgacgagcc agcgaggagg 6060 aacgaccgac cagaggagtc gtcgacgagt acgaacggag atgacgacaa cgaacaccga 6120 caaggctcgg gtggagggga ggcgaggccg agggcgacct tgccgctgcg atgccggaag 6180 tggtggtggc gcggccgacg gcgcacgggt ggaggaaggg ccgaccgggg aaattccggc 6240 gaggcggatg gagaggccgg cgcggcacgg cagtgttccg gcgaaatcga agggcaggcc 6300 ggggtagagg gcgatgtggc gacgtcgagg gaggatggcg acgacgacag ccgccgcacc 6360 ggcgaggtgg cacaggcggc tggaggcggt ggagtggtgg cgacatcact ggtcgtcggc 6420 gaggaggtgg ctccgatgtt ttccctgcga aacggaggcg acgccgggga agaggaggcg 6480 gctgctacac cggggaaggc gactgcacgg ccgaccggcg tgctgacact gcggcagggg 6540 cggttggagg tggccggcgc tcggagagag agagggagga ggcggggagg ggtggtgcgg 6600 ccacgggaag acgcgggagg aggctaaaac gatagaacgg agggaggatg ctccatttta 6660 taggcgcggg gagggagccg ggcatgggag agggcggaac ggcgatggga aacacggccg 6720 gtggccatgg aaagaggttg gaaagtccgc ggccgttccg ggcgatggac ggcgccattc 6780 aagcggaaaa ttagggggaa ttgaagagga aggaatgggg attaattccc tccaattaat 6840 ttggaaagaa tggttggatt tttcgggaaa tggcgctagg gttttttggg agagagagag 6900 gaggccgggc ggctggagga agaagacgac gaccgccgcg tgtgccccac gcgggcgcgc 6960 ggtcagccgc gtgcaacgcg cgtgcgtacg cgggagggga gcggctcggg tagggggggc 7020 gcggcttggg ccgggcgatc ggcccaggag gagaggaggg agaggtggcc cgggggagag 7080 agggaggagg agggagctgg gccgatggga aggagggagg ggcagcccaa gagagagaga 7140 gggaaggaaa aagagaggga gaagatggag acttgggccg caggctgatg tgaccatggc 7200 tactatggat acgaccattg ctcacatcat gaatcaacaa gaagacatca agatcaagtc 7260 ctccatgtgc tgcaatctga ttcggccacg tgttacattg ctgacttcaa acggccgcca 7320 aatctacata cgtgcttcgt tttgggcccg tgagtacttg atggaaagct ctcgaagtcc 7380 tccttccaac ggatccagca tcatctcgga aatctatctc gtttggccgc aatcacaaaa 7440 gcaaggtgct gcgtctcctg tattgggcca atgggcttgt aactttgttt gggaccctgg 7500 cccatgtggg gcccatgtgg ggtgcgcccc aatctggtgg agcacgaccc ttggaccctc 7560 ttggtcgtcc tcccacctct ataaatagta ggtacccctt cagggtttct tgggttttgt 7620 tagattaaag tttagccatt gctacttgct tgcagcgcgc gtgtcggcta gaccgtccgt 7680 ctgcttgttc ttcggaaccc caacttatca tttgtattaa attcctattt gcaatatcag 7740 attgctttta tcttgttctt gcttctttct tcgatttgct tgcaggaata gggttgatct 7800 gcaccggcaa gatcagcaac ccacggagag gtgtatcgat cgctaaggcg caacacaacg 7860 tctcgtacgg ttgtagtcgg atcgtcaacg tttctcccaa atcgtagtta tcacaactca 7920 ccgaaagatc gggccaacaa cagccttgag tgtcgagagg aactcagggt tcatcaggtg 7980 gtatcagagc ttttgttgct cggtgagttt ttatcttcct ataaccagaa aatagccata 8040 caaaaaaaat tcgtatcatt tacctagcca tactgtgcca ttgcattgtt cttttcagtt 8100 tttgctttgt tgaattttgt gttgcattgt cacgtcgtgt tgctggtctt agcgtctagt 8160 tcgtttagag tttcgagttc tggtcacgtt ttgtaccaca gtcgtagctg ccaccgtgtc 8220 tctgttgttg tcgggaccta cgaaaacgga atcggctcgc tgccacggtt ctatttttgt 8280 agttttcaga agtttctgtc ggttagtttt ggagttcttg agttgcatct agtgtttgcc 8340 gatccttgtg tgtgtttgtt ttggccgtgc ctgtgtcgtg cacgagagga ggaaggtgaa 8400 ttaccatatc tgattttgga agtagtcaag tttgttttgg aaagatatag tagattggat 8460 tggttaaaaa tcagtttcct ttttatccca tacaccaaat tcggctgcca tccactccac 8520 ctcctggccg agtcccagtc gcccctttgg ccgagtccga ctccctccct ctcttccacc 8580 gttccgagtt gtgtcaaaca ccttggcgaa tttttgtttg gtgtcggttt cgagatctgt 8640 ttggaaaaac ggaaccggca taaattcagc attccatttt ttgtataatt ataattttgg 8700 gtttagactt ttacatttga gtccctataa attttatatt tatgtttgag tccctgtaat 8760 cttacattaa ggtccttgag tcagtttttg ttaaaaaaaa taagaaaaaa agtgagaaaa 8820 aaaaaggcag aaaggtgcaa aaaaaaaaga aaaaaaaagc cgcaccaaaa aaaaatcaga 8880 aaagaaaagg aaaaaaaaga aaagaagaaa gaagaaagaa agaaaagaga aaatattgtt 8940 ttgtttgagc tgaacttcat acatcagagt gtgcttgagt tgtttctggt gctattttgt 9000 ggtaccgttt gtgtctaggc tcgcgtctct agtacgttct agcctaggac cagcacggta 9060 cttgactttg aacaattatt caactttgcg ttctctgatt tgagcatttg ctattccttt 9120 gctacatatt taagcctacc cagagctcca cagatttgat tgcagccgta cagcaagtgt 9180 ttgccgaggc atcgatatat ccaacctcta ttggggtgct tggttgagtc ggtgtacatc 9240 accattccac ttgcattggt aagatcttgt aagagcttgg ttaaaagctt gagtgtgtgt 9300 gagatttgag ctgccagtac ctagtagttg ataggagcgt gtatattctt gtgtatgttt 9360 cttgtttgct gctacccatg gcaggattgc gcaaggggaa acaagatggt catgctcaac 9420 gtcaacatct acaccttcga cgagatatga cgacttcttc acgtgatgca tatgaggtac 9480 atgactataa ttttgcacaa gttgcatgta agttaccagt ctatgatgga aagtatgatt 9540 ccgctgcata cattaattgg gagctagcag tagaaaaaca atttgatgag tatgattttt 9600 ctaatgctca aatgattaag gctgctagta ataagtgtgc cggttctgca tctttttggt 9660 ggcatactgt ggggaataag cttgaaactt gggatgaatg caaaatactg atgagaaaaa 9720 gatttatgtt ttcatactat agacgtgctc tccttgagaa atgggaacat ctaaaacaag 9780 gtgacaaaac tgttagggag tactttcatg attttaaaat ttgtatcact tatagtggtt 9840 tacaagaatc taatgagaac acaatgacta gatttttcag agggcttaat ttcaatattc 9900 aggctgggct tgttaatgtg acatataatc atataggcca attgttcatg ctcgcttgca 9960 ttgttgagcg caaaattttg gagaatccaa tggagcaaca agatatgctt gtgcctccta 10020 tcactgatgt tttgcaggaa gttcagaaaa gtctccaaaa tgagaagaac gatatgtttg 10080 agatgtcact tccatcactc gcgaatgagg agaaggctga tgcagctaca ttatctgaag 10140 aaagttcgca aggtaaatta aatggtgctg agagaaatga aggtgagtat tctcaaggtg 10200 agctacactt gtccactttt catgctatag tagagcaacc attagtggaa tcaattactg 10260 agttgccttt gtcacaagtg atttacttgc tgttccttgt gataaagaag agttgtgtga 10320 taatgtttca cttatatcca tgccacaact agtgaatgaa catgttagtt ctactatttc 10380 tttgtgtgct gattctaagc atgttgttca cattgctaat gaagtagagg aacgcgaatt 10440 gctatcttct ttaaatactt tgggctatgt tcagtttgat gatttttgtg agcttgataa 10500 tttgaaggag aaattatttg ctaaatctga tatgccatgt ccaactaatg ctatttttca 10560 tatctttggc gaatataatg atagaggaat atttttggtg catagagttt acatttgttc 10620 agatttagaa catcttgtag ttccggataa aatatgcaag ctagagagac atgttactgc 10680 taatcatatt gtctcgagtt tgtcttgttt tgattgcaag aaacaggttg ttttcagtgg 10740 actgcgcgaa gagcaccata tggaaaaacc gaggacgttt ttctgtgaag aaggggagga 10800 tgatgtgacc atggctacta tggatacgac cattgctcat atcatgaatc aacaagaaga 10860 catcaagatc aagtcctcca tgtgctgcaa tctgattcgg ccacgtgtta cattgctgac 10920 ttcaaacggc cgccaaatct acatacgtct ccgttttggg cccgtgagta cttgatggaa 10980 agctctcgaa gtcctccttc caacggatcc agcctcatct cggaaatcta tctcgtttgg 11040 ccgcaatcac aaaagcaagg tactgcgtct cctgtattgg gccaatgggc ttgtaacttt 11100 gtttgggacc ctggcccatg tggggcccat gtggggtgcg ccccaatctg gtggagcacg 11160 acccttggac cctcttggtc gtcctcccac ctctataaat agttaggtac cccttcaggg 11220 tttctggggt tttgttagat taaagtttag ccattgctac ttgcttgcag cacgcgtgtc 11280 ggctagaccg tccgtctgct tgttcttcag aaccccaact tatcatttgt attaaattcc 11340 tatttgcaat attagattgc ttttatcttg ttcttgcttg tttcttcgat ttgcttgcag 11400 gaatagggtt gatctgcact ggcaagatca gcaacccacg gagaggtgta tcgatcgcta 11460 aggcgcaaca caacgtctcg tacggttgta gtcggatcgt caacgtttct cccaaatcgt 11520 agttatcaca actcaccgaa agatcgggcc aacaacagcc ttgagtgtcg agaggaactc 11580 agggttcatt acaggccgag ggagagagag ggaggacttt gggctgggct cggcccaaag 11640 gaggaaggag ggtttatttt tagtttttct ttttagtaaa ctttgataat tgttattgtt 11700 gcttaataaa tattttcggt gctctgaaaa ttcaagtaaa atttgagggc tctttttaga 11760 ccaagaagaa tttgacaaaa tttctccggg ccacattcga atttttcttg tacatatttt 11820 agtgtttgcc aatttcattt cgaattttaa ttaattctat tattcctttt agagaatgat 11880 ttttaattcg ggatgaattt atcaggacgt gacacaagga gacacttgga gaaggactta 11940 gagccatgga ggatcatcga ggacgtccaa gtcaaggtag tggcccaaac caattcgacc 12000 tcgggtgcaa ttcggatacc aggaccagtc tgcactaaaa cgggagccta ggtcgcatac 12060 gtgctcggat tggggcattc tttatatgga tggaaagcta agaagataac ctttccaatg 12120 gttttggtcc cacatccaaa ttatttccga gtcaatggga atcgaccaaa caagttgaca 12180 ttcagaattt gttccggtgc tgcgtcaccg tatttgggcc tttgggccgt gtatcgtgct 12240 ggaacccagt agggttgcgt cgagagtggg ttgcacgacc ctaaactcta tatatcagta 12300 ccaccaccat ctttaggttt ttggggtttg cttagattaa tctgtcgagg acagtttcat 12360 cgctagatcg gtttgtaaga ccccaactcg tgagcttaat cattcatctg caattttggt 12420 tgttttctat ttctctcttg tttttgttct tcgattggca aactgccggg tcccaaaact 12480 aatgatttgg taaccgacat gttaaaactg tatcaagccc tggatcagta gattgataca 12540 agttcaatat tttggatcgt ctttgcttac gtttagacat agctttgaag gagatattat 12600 tacataaagt aatagggtat ttacaagatt gtggttaact attacagcag aagctttaga 12660 atggcctaac tctgttgttt tgctatagac ttaaaccatc tatctaatct agacttgaga 12720 attaggttga aatgaaacta acttatatga ttgaactccc agcttcggca caaactccaa 12780 atgaactctg aaaaaggggg ttgaagcaag ggtgagtaca acgtactcag caagctatta 12840 tatttaatca acaatgaatg tatgaaataa taatatctgt gtaaagctag gtttacttgc 12900 aaaaagcaga gaatgtagaa gtagaaaacc tgtaatgttt taaatgcagc agtatttaat 12960 aaaatttcaa attaggtttc tatccaagat gccatagtga gtcccaatgc tcgataaccg 13020 cgagcacggc tatttgaata gttttgagga tattcatact acagtagatg tacgctttac 13080 ccgcaatcca tgacgtgcca aacacattag ccttgtcatg gcaaagcttt tcagttacta 13140 acatcagtgg tacctgttcc atgaactcta gtccccatgc actctgaacg taacgttatc 13200 agcagcgaga ggagttctgg cgttcccgag ggctttagag agaactgatt gtatgacacc 13260 atgtcatcgc aatcagggtt cacaaacaat ttgtgcacaa ttcatttcat atatttacct 13320 gcgcctcggt aaatatcaca attgcccttc gcggcataaa tttgcctcct gcacgaggac 13380 ttaagaagaa ccactataca gaggtaccac ttttgctaga taacttaatc agctaggtct 13440 atgcccatac gagaattgcg gtcgtactca tatgttcttc acatgtactt ggcagtctta 13500 tatcggttgg aacagtacta gccacccgga aatcaaccat ttctaccgta ctgtcccaat 13560 ctaagttcat tatattttat gcattctaac taggcagggc taagcaaaag ctagcatata 13620 tctggtttgc tatatattca ggttatgcat tcaaaatcat gtatggccaa tgcacaagat 13680 actggagata tagaatatag gattattatg ctcaaatggg aggaataata acttgccttg 13740 ctccaacgca aacaaatctg agataggcaa cctgattatc cgatcctcga aacaccacag 13800 gttgccatcc aaaagataat agactctact aagaaagacg aagaaccaaa ttcaataaaa 13860 atcatgaaat agcaagaaag tgataaacag caagaagggc taggcttggg gtataaatat 13920 ctctgttaaa ggcgtatagg attctaaagg gttggaggct aaggtggaga ggggatcc 13978 // ID TRUNCATOR repbase; DNA; ORY; 2918 BP. XX AC . XX DT 09-SEP-2002 (Rel. 7.08, Created) DT 11-JUL-2005 (Rel. 7.08, Last updated, Version 2) XX DE Rice gypsy-type long terminal repeat TRUNCATOR. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW GYPSY superfamily; Long terminal repeat; TRUNCATOR; KW retrotransposon. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RA Song Y.W., Pi Y.L., Bureau E.T. and Ronald C.P.; RT "Identification and characterization of 14 transposon-like RT elements in the noncoding regions of members of the Xa21 family RT of disease resistance genes in rice."; RL Mol. Gen. Genet 258(5), 449-456 (1998). XX DR [1] (Consensus) XX SQ Sequence 2918 BP; 641 A; 691 C; 673 G; 913 T; 0 other; ctctctgtca caccctgaaa attcaaaata tataaattgt tgtttaaatg gaatttttag 60 aatttatttt aaaagcctag aagagaagat ctaattttaa attaataaat tacaatataa 120 aatggggcca gataaaattt cattaaatac tttgcttaat tctataattc ctagattttt 180 ctgggattta tttgagctaa ggaagtattt ttaataaatg gaattacatt tcatgaataa 240 tttaaattga aaaaggtttt aaaaagtctc ttttggcttt gggccgaaag tcggcccaaa 300 accgctctct ctctcctcgg cccagtccgg cccagtccgc cgccgcgcgc gcgcgtccgc 360 ccgctgacag gtggggccaa cctgtcaggg tcgtcgtcaa cctccggccg ccgccgcccg 420 aaaccctagt ttcgcgccgc cgccgttccc ttccaaattc gatcgatcct ttccgtttcc 480 ggccgaattg atagagggga aacaatctcc gggatctcct ctaccttttc tcttttggaa 540 acatcggcta attcgttttg gaaatcgttg gaatcgagtt cgaatcggat tcgtctccct 600 cctccgaacc ctaaaccttc cttctcgtcg ccagccgccg tgggccttcg ccgtcgcctg 660 cgagcccctt taaaaggttc cccggtgtct cctctacccg tcgccacctt cgccttcgcc 720 tctcgtcgcc ggaagagctc tagcgccgtg caacctagcg ccgccgtcgt agccgtcgct 780 ccagccgtgc gtcgccgccg tctcggtcgt catcatcgct cgggaaggcc accgtcgtga 840 tcgccaagtc gccgccgttc tcgtccgctc ctttgccgcc gccgaagacc gccggagcac 900 cgtcgccacc gtcgacccga agtttgccgc cgcttcctcc tcgtcgccgt cgccgtccat 960 tgatcttccg ccgctctttt ggtcaccggt gagttcgccg cgtcgcgctc tacccgttgg 1020 tgccttccat tcgcgccgcc gtgccgtcgt tcgccggcga gcgtgcaagc ccgagccgcc 1080 gagccgccgc cgccggtggt gacgtcatcg ccgacgtcat cggggccgtt cgctgtgagc 1140 cggtcgtgga ccgttcgatc tcggccgtcc gttttggatc aagtcgatct cggccgtccg 1200 ttcgcgtgag ccgtcgcctg tgtgcccggt ccaccgaaac cctagcccgc tgacgcaata 1260 atcctccttt tccttttcaa aaataattca ttattgcgtc ataattcaat taaaatcaat 1320 ttaagtgttt taatccgatt taatcttcaa aaattcataa ctaattcatc ttagctccga 1380 tttagttggt ttatgtgctg ttttggtggt tttgcttctt tttgtttaga ttccgtcgtt 1440 tccggagagt ccgttttcgc cggagaagag tttgaagagt tccaaggcca gcaaggcaag 1500 tcacacagat cccatacaac cctttgagca tgttgatcct atttaaagct attgtttcta 1560 ttcaaatatt gcatttattt tcgaatgtca ttgggtggaa ttaacctatt gtttgttata 1620 gcccttttgt tattgattac tttattcctt gataccttgg gttattataa tttgactagt 1680 gagctttata tattggttca actagatatt agatataatt gcttagccct gcttagaaac 1740 attagcttac tattgggata acttatgact cactgttatt taatgatggc ttaatgatag 1800 ttcacgatgg tcaatcgtga tttgttaatt aattatttgc caactaaaac ctgataatgg 1860 tgggttgtga gcacatggtt ttgatggtcg tgctcatgac aattaaggac cggttcacga 1920 gtttcggttg tgaaacatta accgtgccaa ccataagcca gcatgggcaa cggctttatc 1980 ttttatatag catggttcat tgcggggcac cagactgaga agtggcggag ataagcccac 2040 gagggtcgct ggggagtcca tgccttgttt ttaagggggt gattatgatc caggaaggtg 2100 cactgcagtg gattgtgtta tgcaaggggt attgtcacaa ctcctttccg aggtaccgtg 2160 gtggtattga ggcacatggt gacatgatgt ggggttgtgt cttgtgggta cagtggtaca 2220 cctctgatca gagtaaaact attcgaatag ccgtgcccgc ggttataggc gggtctaaca 2280 atatctttcg tgattagtct cacccttctc atcataataa aaggtgcttt aattggtaat 2340 aatttgatta gctcctggtt tggaatggta tattcctggt ttggagatag aactgtgcag 2400 ccgggatggt tgttcagaat ggttgggcct atacaacagg gtatgttgta tagcgttgga 2460 ttaatattgt ttaattactt aactgtttta ttaaattctc aaatgtttgc taaatgctgc 2520 ttttgcaaat aaaaccctac tatgccatcc tttgttatcc tgtgcacttg catatttgct 2580 gcgtggcttg ctgagtatgt catatactca ccttgcaatc attcatcaga ggaagagttc 2640 tacagtgaag ctgatggtgt ggaggattag gtgtagcctt ggtcaagctg cctgtggagt 2700 ggagccgtct gcgccgttta tcttattttt ccgctgctta gatctttatt gattgagagg 2760 aactatctac ctctgtaatg acattttata cgcttattaa ttagagtaat aattgtactc 2820 tattatcaat ttgttattgt gtgtctcggc tgattcctgg acgagggttc acacacatgt 2880 aagcgtttgg aattttggat agaaattccg gcgtgaca 2918 // ID HELITRON1_OS repbase; DNA; ORY; 10182 BP. XX AC AP002484; XX DT 10-JUL-2002 (Rel. 7.06, Created) DT 10-JUL-2002 (Rel. 7.06, Last updated, Version 1) XX DE HELITRON1_OS is a rolling-circle DNA transposon. XX KW Helitron; DNA transposon; Transposable Element; HELITRON class; KW HELITRON1_OS; helicase; replication protein A. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-10182 RA Kapitonov V.V. and Jurka J.; RT "HELITRON1_OS."; RL Direct Submission to Repbase Update (MAY-2001). XX DR GenBank; AP002484; Positions 128092 117138. XX CC HELITRON1_OS encodes the 1635-aa OSHEL1p and 280-aa OSRPA1Hp CC proteins. CC OSHEL1p is composed of the rolling-circle initiator and DNA CC helicase domains. CC OSHEL1p (CDS positions: 44-204, 236-410, 855-969, 1185-1292, CC 1712-1972, 2063-2128, 2212-2353, 2499-3381, 3536-6528): CC MVLVHGLSATAMWAIHFFFVRTNHRTCLCERLVLCVSALILFTCTVGTDLRSSILFYAVH CC CVHGVCDLIATCSSTNWKHPYTIGSFLSRPHHNSLHMVYAPWVSALWGTSFCIQIVSFLG CC VPDLCLFIIDRLILVFHRGEDLHGLDRSFKGDFGFQLVFLVVASVISLIADRLSFQSPSF CC FRRRLEDMSDQGLNRVRRVRASRERRAANILSRQLPMHIEHTIVEPVQSTCGNERKRARS CC IMNFTPELSKLNRQRRSLLSSKMPPLALTCTNNVLNAHNSGSSSRTDKEYVQSLKACYPG CC RSYYGPPTYECPYCGAMFWYQERVKSTSAISKRKIIYNLLQRCIDKSINTGNAPYVFKIN CC GVVHHWIGCLLPSHGSPPKFAQLYIYYPENETQNRLNIFENDGDNADRADPEIIAALSLM CC LDSENSLVQNFRYARERLSEHGNQQLTLRLLGCNAKDDVQYNLPTSGEISGIIVGDFLAK CC EYKFDVLVYDKDHGLHQVSPLHPSYMALQYPLLFPYGERGFHLGIKYNNYDGIGRKYVTM CC QEFFRYRMHYRLNEPNPFTCYGRLSDQIDVDVFSTIEANRLQFFIDHQPELRAESVDGIV CC DAIDGIVDAIDRGVTDGDSVGKRMILPASFIGGRRYMYSLNIQVCDYLLFKIIPVLYTVE CC FQKRGLPHIHCLVWLAAPTAEISASVIDGFICAEIPDYDTDRLGYELVSEFMMHGPCGDA CC NKSCACMKNNKCSKNYPKDFQDETIIDEAGFTIYRRRNDGRHIIKNGIPLDNRSVVPYNM CC KLLKTYQAHINVEWCNKSNLIKYLFKYITKGQDRARIYFETTGKTTNASPNHDLAPQDEI CC LEYMDGRFLSTCESLHRLFEFDIHYRMPSVERLVVHLPGKNYVRYEKGSNLRAVLKSPAA CC KSSMLTEWFEANKKYPKAHSLTYCEFPKEQTWEPSSRVWRPRTPAPKIGRIYYVHPTAGE CC LYYLRMILMIVRGAQSYADVRTYNGIVYSTYREACEAQGLLEGDNEWYLLFDEAILTASS CC QQLRQLFVTILLYCSVIDVRSLFDKYWIHMTDDIHNRLKKALDNPHCIIPQDHLLNLLLH CC ELATVFAKSGGDIKDFNLPHPTSIAHIAGGNRLIDEELTIDPLMLSMHADSLITQLNTEQ CC KHIFDVISSRVAHNQPGFFFVCGHGGTGKTFLWNAIIAKLRSQNKIVLAVASSRVASLLL CC PRGRTAHSRFKIPIDIDETSICNIKRGSMLAELLIEASLIIWDEAPMTHRRCFEALDRTL CC RDILSQTCATNSIIPFGGKPVVLGGDFRQILPVVPKGSRHAIVNASITNSDLWKHVTVLT CC MNINMRLLNTNLEQKQKDELHDFSKWVLAIGNGTIPMTTKEGESYPSWIEIPHDLLIITD CC GDKISAIVNEVYCDFFASYMNPEYLASRAIVCPNNATIDEINDYVIGLVPREARIYLSCD CC TISKCAEQIPDFDLLYPPEFLNSINAANFPTHRLILKEGVVVMLLRNLNQSIGLCNGTRL CC LIVALGDRILQCIILIGSNIGDTVYIPRITLSTTKMKWPFTLQRRQFPIRVCYAMTINKS CC QGQTLQRVGVYLRKPIFTHGQLYVTISRATSRSGLKILIENDDGSCGNHTRNIVYSEILT CC ATFPAVLFLTLPYTL CC OSRPA1Hp is similar to the RPA70 subunit of the replication CC protein A. CC OSRPA1Hp (CDS positions 6812-6955, 7048-7449, 7696-7798, CC 7884-7962, 8094-8187): CC MAHILISQLSCGDSNIRIKARVSRLWDFHDLNDDRKIVHTDLVLLDETGNSIHAQMYQHV CC IVNLKPLLQEGKVYYIDSFTVRYANRTYRPVAHSLMILFTKWTTLEECVDVPADFPAITF CC SLTPFGDVPSLVDKNIFYVGNNLSIPSYYIYTSFASLQHLLNLYHIQTDIMGVIAEIGTT CC STRATAFDAENIYNAGQRQPQVVVFVGTLVKNYKGLGLTLTGSSPCKWYINFEIPEVVEL CC KERWNDAPPAGFNQSNPQEKTLKDILDLNPHKHKYKLVLI. XX SQ Sequence 10182 BP; 3051 A; 2026 C; 1826 G; 3279 T; 0 other; atgcgagtgg ttgcttcctg tgtttcatcg atgaccttgg tgcatggtct tggtgcatgg 60 tcttagtgcc actgctatgt gggccattca ctttttcttt gttagaacca accatagaac 120 ttgtttatgc gagaggcttg tcctttgtgt cagcgctctt atactgttta catgcaccgt 180 tggaactgat ctacggtctt ctatgtatgt tttgtggccc ctgttttgct tttagtctct 240 tctatgccgt gcattgtgtt cacggtgtat gcgatctgat cgctacctgc agctccacta 300 actggaagca tccttacact attggttcgt ttttgtctag gccacatcac aatagcttgc 360 acatggtcta tgcaccttgg gtctctgcat tgtggggtac cagtttttgt gtgtgctggt 420 tggaccacca gcatttgtcc atgtcttaat ccattgtact caatcatata ctgttgcatt 480 tcacttagtt gagtgatagt tctactagag gcaaaacaat tgtttcactg ctactgggac 540 cgcctgtcat ggtgttgaca gttgtctatt tgttattggt gggtaccttt ctttcacggt 600 ggatatgaga ttgcttttat tttttaagct aaaatagcat attggtttca tccttatatg 660 tatcgcctcc aatattgctt gcttccttcc tcttgcttct cgccttatct cactgcattc 720 agttgtgtgt tgttcaccga tttcacacca ctgatcgacc tattatcatt gtgctaaatc 780 atccattact aatggcaggg taataattgg atttaaatgg atttcttctt ttttatatgt 840 gtggattcaa ttagattcag attgtctcct ttttgggtgt gcctgatctg tgcctcttca 900 ttattgatcg tttaatacta gtttttcaca ggggagaaga tttgcatggg ttagatcgca 960 gtttcaaagg ttcttgattg tttttcgtaa taagtgcaag agctgctgat gtgatttggc 1020 aggtattctt ttttttctct tttcttctcg acattttgtg acataaatcg tattcttttg 1080 gctgcattcg gctcaagatt attctgtact aatctttttg cgtttgtcat gcagctctga 1140 tcggttctgt gggtagttgt tcgttgttat tattgctgct ttaggagatt tcggatttca 1200 gttagtgttc ttggtggtag ccagtgtgat ctctcttatt gctgatcgtc tgtcgttcca 1260 gtccccgtcg ttctttcgtc gaagactcga aggtaattta ttacttcata ctgtttattt 1320 ttgcgtggtt tttacaagca aattacctat cagttttgtg atgtatgctg catctctgta 1380 tgcatggatt ggtttctccg tatcaacatt ctttttgtca ttgtggagtg ttcttttgtt 1440 ccttgtgtaa aaattactag ctttgtttga atcattgctt tgtgtgttgt ggttgtacga 1500 gagagaacgt acatgcactg ttataacggt tgagtgtata ctttctacta gctgttacat 1560 agatggtcat gcatatgttt cttttttttt tatgtctcat ctctcttttt agctatggtc 1620 atctttcctc cccttaccta ttttttcctt tctccatata tgacttccta gctcctcttt 1680 cctttacatt ctcatgttat gctgtttgta gacatgtcag atcagggttt aaatagagtg 1740 cgcagagttc gtgctagccg ggaaaggcga gctgcaaata ttctatctcg acagcttccc 1800 atgcacatag aacataccat agtagaacca gttcagtcta catgtggaaa tgagcggaaa 1860 agagcacgtt cgattatgaa tttcacacct gagttatcta agttaaatag acaacgacgt 1920 tctttgctaa gctcaaagat gcctcctctt gctcttacgt gcactaacaa tggtatgtag 1980 gttatttttc atgatatatt cataatatat caaatcacat ataggtttgt aaaaatattc 2040 ttggaatatt tgtttgctgc agttctcaat gcacacaata gtggtagctc atcacggaca 2100 gataaggagt acgtgcagtc actaaagggt ctgcacccct actacacata caatagtctt 2160 ttttttattt ccaaacataa attcttactt tgttcactgc gtatattaca gcgtgttacc 2220 cgggcagatc atactacggt cctccaacat atgagtgccc atattgtggt gccatgtttt 2280 ggtatcagga aagagtgaaa agcacttcag ctatttccaa gcgaaaaata atctataact 2340 tgttgcaaag gtggtaaaat acaattgccc aaattgcgcc ctccccctga accacttgcg 2400 acattaataa attttaatgg cgatgcacga tcaaagagat ttttgaggca gatacgatca 2460 tataactcga tgtttgcttt cacttcaatg ggtgcaagta tcgacaaatc aattaatact 2520 ggaaatgcgc cttatgtttt caagattaat ggtgttgtcc atcattggat tggttgtctt 2580 ttgccatctc atggttcacc tccaaaattt gcacagttat atatttatta tcctgaaaat 2640 gaaacacaaa acagactaaa tatttttgaa aatgatggag ataatgcaga tagagctgat 2700 cctgaaataa ttgctgccct ttcattgatg cttgatagtg aaaatagcct tgtgcagaac 2760 tttaggtatg ctagagaacg actttctgaa catggcaacc aacagctaac tcttcgtctc 2820 ttaggctgca atgcgaaaga tgatgtgcaa tacaatttac caacaagtgg tgaaatatct 2880 ggcataatag ttggtgattt cttagcaaaa gagtacaaat ttgatgtgct tgtctatgat 2940 aaagaccatg gattacacca ggtttcgcca ctgcatccat catatatggc cctgcaatat 3000 cctttattat ttccatacgg tgaacgagga ttccatttag gcattaagta caataattat 3060 gatggaattg gaagaaaata tgtgacaatg caggaatttt ttagatacag aatgcactat 3120 agactaaatg aaccaaatcc tttcacatgc tatggacgac taagcgatca aatcgatgtt 3180 gatgtgtttt ctactattga ggctaatagg ttacaatttt tcattgacca ccaacctgag 3240 ttacgagctg agtctgtaga tggaattgta gatgcaatcg atggaattgt agatgcaatc 3300 gatagaggtg tcaccgatgg agattcagtt ggcaagcgca tgatacttcc tgccagcttc 3360 attggaggaa ggagatatat ggtaatgaat tatcaagatg caaccatctg atagagctga 3420 tatcattgtg cgtgtattta atatgaaagt taatgaattc ataactgaca ttagagaagg 3480 cagaactttt ggtaaagttc ttgtaggtat ttttgctcct tcctatttca tatagtattc 3540 cttaaacata caagtatgtg attacttatt atttaaaatt attccagtac tctacaccgt 3600 tgagttccaa aagcgtggac tcccacacat acattgcttg gtatggcttg cagcacccac 3660 cgctgagata tcagcatcgg taatagatgg ttttatttgt gctgaaatac cagactatga 3720 cactgatcga ctaggatatg aattggttag tgaattcatg atgcatggtc cgtgtggaga 3780 tgcgaacaaa agttgtgctt gcatgaaaaa taataaatgc tcaaaaaatt atccaaaaga 3840 ttttcaggat gaaaccatta ttgatgaggc tggctttaca atttatagac gacgaaatga 3900 tggacgacat attataaaaa atggaattcc attggacaac agatcggttg ttccttacaa 3960 catgaagctg cttaaaacat atcaagcaca cataaatgtt gagtggtgta ataaatcaaa 4020 tttgataaaa tatttattta aatatatcac aaagggtcaa gatcgtgcta gaatctattt 4080 tgagacaacc ggtaaaacaa caaatgcatc accaaatcat gaccttgcac cacaagatga 4140 gatattagaa tatatggatg gtaggttcct ttctacatgt gagtctcttc atcgactatt 4200 tgagtttgat atacattata gaatgccatc tgttgagcga ttagttgtac atttgcctgg 4260 caaaaattat gttagatatg agaaagggtc taatttacga gcagtcctaa agagccctgc 4320 tgcaaaaagt tcgatgctaa ctgaatggtt tgaagcgaat aaaaaatatc ctaaggctca 4380 ttcattgaca tactgcgaat ttccaaaaga acagacatgg gagccatcat ctagagtgtg 4440 gcgcccacga actcctgctc caaaaattgg tagaatttac tatgtgcatc caactgctgg 4500 tgagctttac tacttgcgaa tgatactgat gattgttaga ggtgcccaaa gttatgctga 4560 tgtgcgaaca tacaatggca ttgtttattc cacatataga gaggcctgtg aggcacaagg 4620 gctcctcgaa ggagacaatg aatggtacct gctttttgat gaggcaatac taactgcatc 4680 atcgcaacag cttagacaac tttttgtaac catccttctt tattgctcag ttatagatgt 4740 gcgctcatta tttgacaagt actggataca catgacagat gatattcata atagactaaa 4800 aaaagcgcta gataatcctc actgcataat tccacaggat cacttgctta accttctatt 4860 acatgagctt gctactgtat ttgcaaaaag tggtggtgac ataaaggatt ttaacttgcc 4920 acacccaacc tccattgcac atatcgctgg tggtaacaga ttgattgatg aggaacttac 4980 aattgatcca cttatgctaa gcatgcatgc agattctttg ataacacaat tgaatactga 5040 gcaaaaacat atttttgatg ttatatcttc tcgtgttgct cataatcagc ctggtttctt 5100 ctttgtgtgt ggccatgggg gaaccggcaa aacatttcta tggaatgcta tcattgcaaa 5160 acttagatca caaaataaaa ttgtgcttgc tgtagcgtca tcaagggtgg catctttact 5220 gctacctaga ggtaggacag ctcactcacg atttaaaata cccattgata ttgatgagac 5280 aagcatttgt aacattaaac gaggaagcat gcttgctgaa cttttaattg aagcttcgct 5340 tattatatgg gatgaggctc cgatgacaca taggcgatgt tttgaagcgt tggatcggac 5400 tttacgtgat atcctttctc aaacgtgtgc tacaaattct attatacctt ttggaggaaa 5460 acccgtcgtt ctaggtggtg atttcagaca gatattgcca gttgttccta aaggttcccg 5520 ccatgctata gtcaatgcat caatcacaaa ttcagatcta tggaaacatg taacagtctt 5580 aacgatgaat ataaatatga gactacttaa cacaaaccta gagcaaaagc aaaaagatga 5640 gctgcatgat tttagtaagt gggttttagc tattggtaat ggcacaatac ctatgaccac 5700 gaaggaaggt gaaagctatc catcatggat cgaaattcct catgacttac ttattataac 5760 tgatggtgat aaaatatctg ctattgtgaa tgaagtgtat tgtgattttt ttgcatcata 5820 catgaatcct gaatacttag cttctcgtgc aattgtttgt cctaacaatg ctacaataga 5880 tgaaataaat gactatgtta ttggtttagt accaagagaa gcaaggatat acctaagctg 5940 cgatacaata tcaaagtgcg ctgaacaaat tccagatttt gacttgctat atccacctga 6000 gtttcttaat tcaataaatg ctgcaaactt ccctacacat agacttatcc tcaaagaagg 6060 tgttgttgtc atgttgctca gaaatctaaa ccaatcaatt ggtctctgca atggaacaag 6120 actattaatt gttgctttag gtgatagaat tcttcaatgc attatactca ttggctcaaa 6180 cattggtgat actgtttaca tacctcgaat aacactgagt actactaaaa tgaaatggcc 6240 ttttacattg caaaggagac aattccctat tcgagtttgc tatgcaatga ccatcaataa 6300 aagtcaagga caaacactac aacgagttgg tgtgtacctt agaaaaccta tttttacaca 6360 tggccagttg tatgttacaa tttcaagagc tacaagtcga tcaggtctaa aaatattaat 6420 tgagaacgac gatggttcat gcggaaacca tacaaggaat attgtttaca gtgaaatact 6480 cactgctaca tttccagcgg tgcttttctt aacactgccc tatacattgt attcatcttt 6540 ttcttagcat catttagtaa tgcaaatcca ttccaattgc aggctccgcc gttgcatact 6600 tagctatttt ggcctaaaca gggacaaatt ttgtacaaac attttggaat aaatatatgt 6660 cttcagcagc tatcatgtgc tatatacccg ctgcaatatt cccctcttaa tattatatgt 6720 actgtctttg tcatcactgt tttctttcat tagcagtaac tatatagatt aatatgtatt 6780 aaaattgttt actacctatt gcagattcca aatggcgcac atactcatct cacagctgtc 6840 atgtggtgat tcaaacatac gaattaaggc aagagtttct aggctatggg actttcatga 6900 tctcaatgat gatagaaaaa ttgtgcacac tgatcttgtc ttactggatg aaacggtaac 6960 aatttaccta ctgcaatttt acactagaat tttctttatt gtattaatca ttctattgac 7020 aatattctct atatttaaaa aatatagggg aacagcatac atgctcaaat gtatcagcat 7080 gtaatagtga acttgaaacc tcttcttcaa gaaggaaaag tttactacat tgattcattc 7140 actgtcagat atgcaaatag gacatatagg ccagttgcac atagcctaat gatcctattc 7200 actaaatgga caactttaga agaatgtgtc gatgtgcctg ctgatttccc tgctataaca 7260 ttttcattga caccttttgg agatgttccc tctcttgtgg acaaaaacat cttttatgtt 7320 ggtaataacc tatccatacc atcttactac atatacacat cttttgcttc tttacaacat 7380 ttattaaatt tataccacat acaaacagat attatgggtg ttatcgctga aattggcaca 7440 acgtctactg tacgtcctca gtcaaggaac actgacagtt taaaaagaac actataaata 7500 tgtgatgcaa ggttagttcc atgaaactca gtccttacca ttctactttc caaatatttg 7560 ttttaacgaa cattcatact cacttttaca catgctttga atatctaata atttgttcca 7620 attataatta caccaatttt tctattaatc cacaacacta gcaattccac actacctctc 7680 acactttgtg gagagcgagc aactgctttc gatgctgaga atatctacaa tgctggccaa 7740 agacaacctc aggtggttgt gtttgttggc acgcttgtca agaactacaa aggcttaggt 7800 acatttgtac ctacaatttc gcttactatg ttgtgtataa tacaaaatta acaatatttc 7860 aaaattcctc tattcttcta cagggcttac actgactgga agctccccat gcaaatggta 7920 cattaacttt gaaatacctg aagtagtgga actgaaagaa aggtgatctt gttatcttcc 7980 aagtattcct gcaatctatt tacattgcac aatttgcaac tattaggatg acatccatta 8040 attctagaca caatatgttt gcatagcttt agcaccaact ttcagccaat caggtggaac 8100 gacgctcctc ctgcaggatt caaccaaagc aacccacaag aaaagacact taaagacatt 8160 cttgacctta atcctcataa acataaggtt tgtcttacct cttaattaac tatcaacaac 8220 attttcctgg attttacagt cgtattatca acagaatttt ttcactctta tcctttgcag 8280 gaagcacgct tcatagtaaa tgtggttgtt aaaagaatat gcaacgaaaa ctcctagtgg 8340 tacaattcat gtcacctatg ctacaaaacc tcaaaaccat atggctcagc ctacaagtgc 8400 accagttgtt cctatatagg aataccagat caaaggtcaa tagcgcagtt taattaattc 8460 tacatgtcta actatttatc actcacaaat ttctatattc atttaaattt acatgcaagt 8520 acaaattagt gctaattgct ggagatacta ctgcagatgc aacatttatt ctttttggaa 8580 aaactgcgca acgcatcata cgaaggccag tggaatctct gatcgaagaa aatccaccgg 8640 acagtgaatt cattccaagg gaaatcttag cacttgttga caatggtttt ctatggaatg 8700 tcagcttcac aaaggatatt aacagaagcg aagaaactct ccaggttaat agtgttatat 8760 cctctggtcc agcaaatcaa ccaccgctgc ttatgtcgcc aagtacttca cagccagcat 8820 cagcaattgt atcggcaagc tcaagcagtt ctctccagac agcaccaaca ccaagtgaaa 8880 caagcaccga atcgcaatta gccatcatac cagcacaggg cacttcaaca ccaacaaaat 8940 acactcctgc tgctgcaaca gatgagacac caactagcaa atcaagctcc ttagtattta 9000 ccaaaaaaag cattattgtc tcaggctact ctatgccatc tcacactgca aagacctcta 9060 ctgatactaa ggtatccttc ttaataccta ctcttgcact tcctctgcta taaacaaatt 9120 ttcctaaata attggagata cactctgacc tattgaccaa ctatgcaagg caaaaattgg 9180 cactcatcat gaagagaaga tctcacaaag tgcatcttta actacaattg ttccccgtga 9240 tacttcggat aaggtattca tgctctttct tttcataacc taatccatca atttctgaaa 9300 aaaaagtgct tcttctacaa ggcaaaggtc accgctgaat ctccagatga gtctccacag 9360 gcagatcctt cactggcgcc aaagagcaca cccaaaaaaa ggtctgtaaa gctttcagtt 9420 caaagttaca gtaatagaca tttctcgcac acattgtatt tgacatgtcc ttataatgaa 9480 cagaggtaga cctacagaaa ccaccacaat tgccaaaaaa ttgttcaagg atagtaccca 9540 gaagaaaccc actgacaggt taattctgaa taactcagct cacctctcca cacatacgca 9600 ttaattcttt agtaaacttc actaaatttc taaactcatc attcattcct acagtgaatg 9660 agacggatat atgtagtcca tcagcaagtc ttttgtgtat atgtacagaa cgaaccaccc 9720 aagctagaag tgtagaagca acaagttagc tgcaagccta gaggaggcta agaagcaagc 9780 ccttttgttc atgaccccta ggtcatgatt atcattgtaa ataagtaatg ttatgtttac 9840 cttccttgcc accttctgtg ctatgaaatg ttgttcgaac aactactact tatatggaac 9900 caatatagtt atggctgcgt actacctaaa catttctcct tcatgtcaaa gacaccatta 9960 tacgcaaacc ttttattttc tactatagct atatcgaacc atacaataca ctacatgata 10020 aatagcacaa attattctga caagcaaact ccattgtctc aatcctacgg catggaaaga 10080 tttttaaaat acactacact atctatattc ctatacattt aaatgatgaa aaaaacttcc 10140 agctccacaa gagcagcgcg cgaagcgcgc tctcgcccct ag 10182 // ID COPIA1-I_OS repbase; DNA; ORY; 6864 BP. XX AC . XX DT 31-MAR-2005 (Rel. 9.1, Created) DT 31-MAR-2005 (Rel. 9.1, Last updated, Version 1) XX DE Rice copia-like LTR retrotranposon - internal consensus sequence. XX KW 6 bp TSDs; COPIA1-I_OS; copia-like retrotransposon; integrase. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-6864 RA Gentles A. and Jurka J.; RT "COPIA1_OS: Rice copia-type LTR retrotransposon."; RL Repbase Reports 5(2), 30-30 (2005). XX DR [1] (Consensus) XX CC Closest related element is SZ-55. 6 bp TSDs, 1214 bp LTRs. CC There are around 13 complete copies in the rice genome, all CC more than 96% similar to the consensus. XX FH Key Location/Qualifiers FT CDS 0..0 FT /product="ORF1" FT /translation="MTGDKNWFSSLKKASKTESIIFGDASTSAVLATGLVK FT VNEKFELKNVALVEDLKYNLLSVSQIVDENFEVHFKKTGSKVFDSCGDSVL FT NISRYGRVFKADFENPVSPVITCLVAKFDKDVMFWHRRLGHVGFDHLTRLS FT GLDLVRGLPKLKKDLDLVCTPCRHAKMVSTSHAPIVSVMTDAPGQLLHMDT FT VGPARVQSVGGKWYVLVIVDDFSRYSWVFFMATKDEAFQHFRGLFLRLXLE FT FPGSLKRIRSDNGGEFKNASFEQFCNERGLEHEFSSPRVPQQNGVVERKNR FT VLVEMARTMLDEYKTPRKFWAEAINTACYISNRVFLRSKLGKTSYELRFGH FT QPKVSHLRVFGCKCFVLKSGNLDKFEARSTDGLFLGYPAHTRGYRVLILXT FT NKIVETCEVSFDEASPGTRPDIAGTLSQVQGEDGRIFEDESDDDDDDEVGS FT AGQTGRQAGQTAGTPPVRPAQEVRSDRPGSSGSGTVDADRDGPPEITTSTS FT TDTERGSTSEVAAPLHIQRRHPPEQIIGNIGERTTRSKVTTHDVCANSAFV FT ASFEPKDVSHALTDESWINAMHEELENFERNKVWTLVEPPSGHNIIGTKWV FT FKNKQNEDGLIVRNKARLVAQGFTQVEGLDFDETFAPVARIEAIRLLLAFA FT ASKGFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSKALYG FT LKQAPRAWYDRLKNFLLAKGFTMGKVDKTLFVLKHGDNQLFVQIYVDDIIF FT GCSTHALVVDFAETMRREFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTK FT DLLRRFKMENCKPISTPIGSTAVLDPDEDGEAVDQKEYRSMIGSLLYLTAS FT RPDIQFAVCLCARFQASPRASHRQAVKRIMRYLNHTLEFGIWYSTSSSICL FT SGYSDADFGGCRIDRKSTSGTCHFLGTSLIAWSSRKQSSVAQSTAESEYVA FT AASCCSQILWLLSTLKDYGLTFEKVPLFCDNTSAINIAKNPVQHSRTKHID FT IRFHFLRDHVEKGDVELQFLDTKLQIADIFTKPLDSNRFAFLRGELGIIHP FT FGMVX" XX SQ Sequence 6864 BP; 1922 A; 1068 C; 1540 G; 2331 T; 3 other; agtggtatca gagccttgtt ttcttctttg gatttttatc gatctagagt ttttgccatg 60 gctactcccg ctaggttttc aactaagcct catgttttcg atggaacgga tttttctcat 120 tggtgtagta ggatgcaatc ttacattatg gctgaagatt atgatatttg gagaaaagtt 180 tctcatcctt atgtgattcc tgaagctatt aatactgctg ctgaaaaaac tgcttttgaa 240 caaaattgca aagctcgcaa tattcttttg agtggtattt ctcgttcgga ttatgatcgt 300 gttgctcatc ttcaaactgc tcatgagatt tggaatgctt tgagtaattt tcatcaagga 360 acaaataaca ttaaagaact tcgtcgtgat cttttcaaaa aggagtacat taaatttgag 420 atgaaacctg gagaagcttt ggatgactat ctttctaggt ttaataaaat tttgagtgat 480 cttagatctg ttgattcttc ttatgatgct aattatccac aatctgagat ttctcgtcac 540 tttttgaatg gtcttgacat gtctatttgg gagatgaaag ttacatctat tcaggagtct 600 gttaacatgt ctactttgac tttggattca ctttatacaa aattgaaaac acatgagatg 660 aatgttcttt ctcgaaaagt tgattctaag tcgagtgctt tggtttcttc ttcttcttct 720 ttggatgttg atgcttcttc atctaagcct tcttttcttg ctgtttttaa tgccacatcc 780 gatgatcaac tcgaacaaat cgaggaggag gatttggctt tggttgctaa cagaattgct 840 cgagctatga ataatgccag gaacaggaaa agaggtggtc caaatcgttg ctttgaatgt 900 ggttcaattg atcatcttcg ttcgcattgt cctaagcttg ggagaggcaa aagagaagac 960 aaagatggtg agaagaccaa caacaacaag cccaacaaac aagtcgaagg gttcatacca 1020 agggaggaag atggagaatc ttaggaaggc ttttcaacaa gtttgcgccg ccttcgagcc 1080 actaagtgat gtagatggtg aaagtggaga tgatgataag ggaaagaaca tctccgatgt 1140 ttgcttcatg gcgcgtggtg aatctgacac agagtatgaa gataatgagg taagtgcttt 1200 tgaggaagct attaatattt tgagtgcaaa aaataagaag tgtgagaaga tgtatagaaa 1260 acaggaattt atcattgaat ctcttaaatc tgaaattgct agattaaaat ctcttattcc 1320 taatgatgat gattgtgaaa attgtgaggt tttaatgaat gagatttcaa aaattagaga 1380 tgttaatgct gcacatgatt tgaaaaatag atcttctctt gcttgtagtt ttgctttgca 1440 cacacgcact ttggatgagt tgtttttaac taaaaagttg ttgcaaaaat atcaaattgc 1500 ttttcatgct agtttgatgt ttaacatgat ttctgctaaa aagttaaaac aacctcatga 1560 tgttttggat tgctcaacat gtaatttgaa taagatgaaa ctaaaagatg ctttaggtcg 1620 tgttgagtac atggaagatg ttgtgaaaaa caatgaagtg ctttcttgcc ccaaatgtcg 1680 taaaagcaaa ggtgtcatgg tagattgtga aaattgtgct aatttggaaa aagaggtttc 1740 ttatttgaaa aattctttgc taagattttc tgatggtaaa aagaacctca acatgatttt 1800 ggatcaatca aaggttagca cacataaccg tggtttaggt tttaatcctt atgctcataa 1860 ttctagacat cctcctgttg tgttaggtgt tggtgctaga agtggtgaga ttttggttaa 1920 acctgatact aataaaactg tgtttaaatc tgctggtatc atgtctacca tgaatgcatc 1980 ttcttcaaaa tccaatgttg tgcatgcaaa acctcctgtt gttgcttgtg ttgctaaatc 2040 ttctaattct accaatgtgt ctaatcatcg tgaaaaatat acttgttctt tttgtggcaa 2100 agatggacat attgttggtt tttgtttcag attagctcat aaacagaaaa aggagagaga 2160 gattgctttt gcaaaatcaa agtggcaaaa atctggtttt ccctcgagga aaccggtcag 2220 accgcagtgg gtcccgcggt cagaccggcg accggtcaga ccggctrctg agcctcggtc 2280 agaccgggca ccggtcagac cggcggtaca gaggcggtca gaccggcccc cggtcagacc 2340 ggccactgta cctcggtcag accggcctcg gaggaatttt tctgaaaatt ctaaaattga 2400 ttttgcacgt ggatatatgc ctattggatc ttctggtcgt gtgtctcagt actggattcc 2460 taaattttta ttatcatcta accccagtac tgaggcttcg acttctgctt gtgtgtaggc 2520 tttggtggca aggaaggaga acgtgtggat cgtggattcc ggttgttcgc ggcacatgac 2580 cggtgataaa aattggttct cctccctcaa aaaggcatcc aagactgaat cgattatctt 2640 tggtgatgct tctacaagtg ccgttctcgc tacaggtttg gttaaggtaa atgaaaaatt 2700 tgaattgaag aatgtagctt tggttgagga cttaaagtac aatttgcttt cagtttcaca 2760 aattgttgat gaaaattttg aggttcactt taagaaaact ggaagtaaag tttttgattc 2820 ttgtggtgat tctgtgttga atatttctcg ctatggaaga gtgtttaaag ctgattttga 2880 aaatcctgtt tcacctgtga taacatgttt ggttgctaag tttgataaag atgtgatgtt 2940 ttggcatcgt agacttggac atgttggttt tgatcatctc actaggttaa gtggtttgga 3000 tcttgttcgt ggtttgccta aacttaagaa agatcttgat ttggtttgta caccgtgtcg 3060 tcatgctaag atggtttcta cttcacatgc tcctattgtt tctgtgatga cggatgcacc 3120 gggacagcta ttacatatgg acactgttgg tccagctaga gtgcaatctg ttggaggaaa 3180 gtggtatgtg ttggttattg ttgacgattt ttctcgatat tcttgggttt tctttatggc 3240 aactaaggac gaagcttttc aacactttcg tggtttgttt cttcgattgg akcttgaatt 3300 tcctggttct ttgaaaagaa ttcgaagtga taatggtggt gagtttaaaa atgcttcatt 3360 tgaacaattt tgcaatgaaa gaggtcttga acatgaattt tcttctcctc gtgttcctca 3420 acaaaacggt gttgttgaaa ggaaaaatcg tgttttggtt gagatggcta gaacgatgtt 3480 ggatgaatat aaaactccta gaaaattttg ggctgaggcg attaacactg cttgttatat 3540 ttcaaatcga gttttcttga gatctaaact tggaaaaact tcttatgaac ttcgatttgg 3600 acatcaaccc aaagtttcac atttgcgtgt ttttggttgc aagtgctttg tcttgaaatc 3660 tggaaatttg gataagtttg aggcacgttc taccgatgga ttgtttcttg gttaccccgc 3720 acatactcgt ggctatcgtg tacttatttt ggrgactaac aaaattgttg agacttgcga 3780 agtttctttt gatgaggcta gtccaggtac tagacccgat attgcaggta cactgtcaca 3840 ggttcagggg gaggatggtc gtatttttga agacgagagc gacgacgacg acgacgacga 3900 ggtcggctcg gccggtcaga ccgggcgcca ggccggtcag accgccggca cacctccggt 3960 cagaccggca caggaggtgc ggtcagaccg gccagggtcg tcgggttcgg gtactgttga 4020 tgctgatcga gatggtcctc cagagattac tacttcgacc agtactgata cagaacgtgg 4080 atcaacttca gaagtcgctg ctcctttgca cattcaacga cgacatccgc cggaacaaat 4140 tattggtaat ataggtgagc ggactacaag gtctaaggta acgactcatg atgtttgtgc 4200 aaattctgca tttgttgctt cttttgaacc caaagatgtg tcacatgcat taactgatga 4260 atcgtggatt aacgccatgc atgaagaact tgaaaatttt gagagaaaca aagtttggac 4320 tttagttgaa ccaccttctg gacataatat tattggaacc aagtgggttt tcaaaaataa 4380 acaaaatgag gatggtttga ttgtgagaaa taaagctaga cttgttgctc aaggttttac 4440 tcaagttgag ggtttggatt ttgatgaaac ttttgctcct gttgctagaa ttgaggcaat 4500 tagacttttg ttggcttttg ctgcttcaaa aggttttaaa ttgtatcaaa tggatgtgaa 4560 aagtgctttt ctaaatggtt ttatacagga ggaagtttat gtcaaacaac caccaggttt 4620 tgaaaatcct gattttccca accatgtttt taaattgtct aaagctttgt atggtttgaa 4680 acaagctcct agggcatggt atgataggct taagaacttt ttgcttgcga aaggttttac 4740 aatgggaaag gttgacaaaa cgctttttgt tcttaagcat ggtgataatc aacttttcgt 4800 tcagatttat gtggatgata tcatctttgg ttgttcgact cacgctttgg ttgtagattt 4860 tgctgagact atgcgcaggg aatttgagat gagcatgatg ggtgagttat cgtacttttt 4920 gggattgcaa attaagcaaa cacctcaagg tacttttgtg catcaaacga agtatacgaa 4980 ggatcttttg agacggttca agatggagaa ttgcaagcca atttcaacac caattggttc 5040 tacagctgtg ttggatcctg atgaagatgg tgaagctgtt gatcaaaagg aatatagaag 5100 tatgattgga tctttgttgt atctaactgc ttctaggcca gacatacaat ttgctgtgtg 5160 tttgtgtgca cgctttcaag cttctcctcg tgcttcacat cgtcaagcgg tcaagcgaat 5220 aatgaggtat ttgaatcata cacttgagtt tggaatttgg tattctactt catcttctat 5280 atgcttaagt ggatattccg atgctgattt tggaggttgt agaattgata ggaaaagtac 5340 tagtggaaca tgtcattttc ttggtacatc attgattgca tggtcttcta ggaaacaatc 5400 tagtgttgct caatcaactg ctgaatctga atatgttgct gctgctagtt gttgttcaca 5460 gattctttgg cttttatcta ctttgaaaga ttatggtctt acttttgaga aagtacctct 5520 cttttgtgat aatactagtg ctatcaatat tgctaagaat cctgttcaac actcacgcac 5580 aaagcacatt gatattcgtt ttcacttttt gagggatcat gttgagaagg gagatgttga 5640 attgcagttt ttggacacaa agttgcaaat tgctgatatt ttcactaaac ctttggattc 5700 taatcgcttt gcttttcttc gtggtgaatt gggcataatt catccttttg gcatggtttg 5760 agggggagtt tgtacctcat ggttttatca agcaataata tgacaatgag aaaaattgag 5820 aaaagagagc tttgtttatg catatggtat tttcttgtgc atgctagcaa tactttgaag 5880 gtttatttgt ctctagcata gcttgtatgt attctagtct tttcatgaga tttagatttt 5940 gcttttaagg gagatgatgc atgacactta aattctatac ttgaattaag aaaatatgca 6000 atgttgatgc tagcatatgg tttgatttat aaatgctcta tatatatgct ttattgactt 6060 gttattcctc aaatagcttt aattgctcat tgtgaaaaag agaataaaaa tatgaaaaaa 6120 atgaataccg aatccttgga aacagtcttg acgacaagga cgtattcgat gtgagcaaaa 6180 taatgggtgc cgaatccctg gaaacagtct tgacgacagg gacgtacccg gaataaaaga 6240 gaaaaatatg agcaaaaagg ctcaagaaaa gaaaaagtta aaaaattctc ttggttattt 6300 tgtgctaaag gttatttgag aaagagtgat aaatgcaata ggtatatgtg tttagtgttt 6360 attcttcaac ctatgtgctt gttaagatgt tgcattataa atcgtatgaa atcatgaatt 6420 ttgattgttg attcaagctt aattgtaaaa tctttggttc atggttatac tttaatgcat 6480 gcttgttatg ttatagatgg gttcatcttc tttttattgc aacacatgac ttgatatgct 6540 atatgtatgc taagctcttg aacattaatg aacataattc ctatgcttga tgaaatcatt 6600 gtcaaaaggg ggagaagtaa tgtgaaaatt tttggatttt tggagaagca aggtgaattt 6660 ttggagagtt gttgagaaga gcatgttttt ggttcaattg ggaatttctt tcttttaaaa 6720 agggggagaa gttttctttt ggatttttga gcacgatgtg tacatttgta cgaagtgtgc 6780 tttttaccac ttttgttttt atttttccaa acaccaaaac attttttatg ggtttgccaa 6840 tgtgttcatc aagggggaga ttgt 6864 // ID SZ-7LTR repbase; DNA; ORY; 582 BP. XX AC . XX DT 13-SEP-2002 (Rel. 7.08, Created) DT 13-SEP-2002 (Rel. 7.08, Last updated, Version 1) XX DE Rice gypsy-type long terminal repeat SZ-7LTR. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW GYPSY superfamily; Long terminal repeat; SZ-7LTR; KW retrotransposon. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-582 RA Jiang N. and Wessler R.S.; RT "SZ-7LTR: a gypsy-type LTR from Oryza sativa."; RL Repbase Reports 2(8), 52-52 (2002). XX DR [1] (Consensus) XX SQ Sequence 582 BP; 155 A; 142 C; 121 G; 164 T; 0 other; tgtcaggatt acggataagg catacctcct atcttaccac ttatggaata taccgataag 60 gtataccttc acgtacacgg atcgttccaa catacgttgt aggaatcttt acaaattatg 120 gaaaatatct ccacgggtca aagtaatttc caaagtccta ctcggaaggg atagttcctg 180 tggtatcgtg caaggtccga tatctccgag tcttacttgg ggatcaagat gatccacggt 240 ataaaaggga cccccacgga ggggtgcaag gcatcgcata tcatcaccta cacacccacc 300 atagtttacg aagccggagt atgcgaagcc aagttgttgg gagatctcgt cggatacacc 360 gactacgatc tcgttggtat cgtcggtttc gtctacttcc attgtaatct gtgtttttcc 420 atcatcaatc ccatataaac tggactaggg ttattacctg ataaggcgca tgaaccagta 480 taatcctttt cttttatttg cttgatgttg tactacgtag attctcgttc caacggaccc 540 caatacccaa atcattcggt ccacgggtat cccccgtcga ca 582 // ID TRUNCATOR repbase; DNA; ORY; 2918 BP. XX AC . XX DT 09-SEP-2002 (Rel. 7.08, Created) DT 09-SEP-2002 (Rel. 7.08, Last updated, Version 1) XX DE Rice gypsy-type long terminal repeat TRUNCATOR. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW GYPSY superfamily; Long terminal repeat; TRUNCATOR; KW retrotransposon. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RA Song Y.W., Pi Y.L., Bureau E.T. and Ronald C.P.; RT "Identification and characterization of 14 transposon-like RT elements in the noncoding regions of members of the Xa21 family RT of disease resistance genes in rice."; RL Mol. Gen. Genet 258(5), 449-456 (1998). XX DR [1] (Consensus) XX SQ Sequence 2918 BP; 913 A; 673 C; 691 G; 641 T; 0 other; tgtcacgccg gaatttctat ccaaaattcc aaacgcttac atgtgtgtga accctcgtcc 60 aggaatcagc cgagacacac aataacaaat tgataataga gtacaattat tactctaatt 120 aataagcgta taaaatgtca ttacagaggt agatagttcc tctcaatcaa taaagatcta 180 agcagcggaa aaataagata aacggcgcag acggctccac tccacaggca gcttgaccaa 240 ggctacacct aatcctccac accatcagct tcactgtaga actcttcctc tgatgaatga 300 ttgcaaggtg agtatatgac atactcagca agccacgcag caaatatgca agtgcacagg 360 ataacaaagg atggcatagt agggttttat ttgcaaaagc agcatttagc aaacatttga 420 gaatttaata aaacagttaa gtaattaaac aatattaatc caacgctata caacataccc 480 tgttgtatag gcccaaccat tctgaacaac catcccggct gcacagttct atctccaaac 540 caggaatata ccattccaaa ccaggagcta atcaaattat taccaattaa agcacctttt 600 attatgatga gaagggtgag actaatcacg aaagatattg ttagacccgc ctataaccgc 660 gggcacggct attcgaatag ttttactctg atcagaggtg taccactgta cccacaagac 720 acaaccccac atcatgtcac catgtgcctc aataccacca cggtacctcg gaaaggagtt 780 gtgacaatac cccttgcata acacaatcca ctgcagtgca ccttcctgga tcataatcac 840 ccccttaaaa acaaggcatg gactccccag cgaccctcgt gggcttatct ccgccacttc 900 tcagtctggt gccccgcaat gaaccatgct atataaaaga taaagccgtt gcccatgctg 960 gcttatggtt ggcacggtta atgtttcaca accgaaactc gtgaaccggt ccttaattgt 1020 catgagcacg accatcaaaa ccatgtgctc acaacccacc attatcaggt tttagttggc 1080 aaataattaa ttaacaaatc acgattgacc atcgtgaact atcattaagc catcattaaa 1140 taacagtgag tcataagtta tcccaatagt aagctaatgt ttctaagcag ggctaagcaa 1200 ttatatctaa tatctagttg aaccaatata taaagctcac tagtcaaatt ataataaccc 1260 aaggtatcaa ggaataaagt aatcaataac aaaagggcta taacaaacaa taggttaatt 1320 ccacccaatg acattcgaaa ataaatgcaa tatttgaata gaaacaatag ctttaaatag 1380 gatcaacatg ctcaaagggt tgtatgggat ctgtgtgact tgccttgctg gccttggaac 1440 tcttcaaact cttctccggc gaaaacggac tctccggaaa cgacggaatc taaacaaaaa 1500 gaagcaaaac caccaaaaca gcacataaac caactaaatc ggagctaaga tgaattagtt 1560 atgaattttt gaagattaaa tcggattaaa acacttaaat tgattttaat tgaattatga 1620 cgcaataatg aattattttt gaaaaggaaa aggaggatta ttgcgtcagc gggctagggt 1680 ttcggtggac cgggcacaca ggcgacggct cacgcgaacg gacggccgag atcgacttga 1740 tccaaaacgg acggccgaga tcgaacggtc cacgaccggc tcacagcgaa cggccccgat 1800 gacgtcggcg atgacgtcac caccggcggc ggcggctcgg cggctcgggc ttgcacgctc 1860 gccggcgaac gacggcacgg cggcgcgaat ggaaggcacc aacgggtaga gcgcgacgcg 1920 gcgaactcac cggtgaccaa aagagcggcg gaagatcaat ggacggcgac ggcgacgagg 1980 aggaagcggc ggcaaacttc gggtcgacgg tggcgacggt gctccggcgg tcttcggcgg 2040 cggcaaagga gcggacgaga acggcggcga cttggcgatc acgacggtgg ccttcccgag 2100 cgatgatgac gaccgagacg gcggcgacgc acggctggag cgacggctac gacggcggcg 2160 ctaggttgca cggcgctaga gctcttccgg cgacgagagg cgaaggcgaa ggtggcgacg 2220 ggtagaggag acaccgggga accttttaaa ggggctcgca ggcgacggcg aaggcccacg 2280 gcggctggcg acgagaagga aggtttaggg ttcggaggag ggagacgaat ccgattcgaa 2340 ctcgattcca acgatttcca aaacgaatta gccgatgttt ccaaaagaga aaaggtagag 2400 gagatcccgg agattgtttc ccctctatca attcggccgg aaacggaaag gatcgatcga 2460 atttggaagg gaacggcggc ggcgcgaaac tagggtttcg ggcggcggcg gccggaggtt 2520 gacgacgacc ctgacaggtt ggccccacct gtcagcgggc ggacgcgcgc gcgcggcggc 2580 ggactgggcc ggactgggcc gaggagagag agagcggttt tgggccgact ttcggcccaa 2640 agccaaaaga gactttttaa aacctttttc aatttaaatt attcatgaaa tgtaattcca 2700 tttattaaaa atacttcctt agctcaaata aatcccagaa aaatctagga attatagaat 2760 taagcaaagt atttaatgaa attttatctg gccccatttt atattgtaat ttattaattt 2820 aaaattagat cttctcttct aggcttttaa aataaattct aaaaattcca tttaaacaac 2880 aatttatata ttttgaattt tcagggtgtg acagagag 2918 // ID TNR8-1 repbase; DNA; ORY; 647 BP. XX AC AB052632; XX DT 09-SEP-2002 (Rel. 7.08, Created) DT 09-SEP-2002 (Rel. 7.08, Last updated, Version 1) XX DE Rice non-autonomous DNA transposon TNR8-1. XX KW DNA transposon; Transposable Element; Nonautonomous; TNR8-1; KW target site duplication. XX OS Oryza glaberrima OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-647 RA Cheng C., Tsuchimoto S., Ohtsubo H. and Ohtsubo E.; RT "Tnr8, a foldback transposable element from rice."; RL Genes. Genet. Syst 75(6), 327-333 (2000). XX RN [2] RP 1-647 RA Jiang N. and Wessler R.S.; RT "TNR8-1: a Mutator-like non-autonomous DNA transposon from Oryza RT glaberrima."; RL Direct Submission to Genbank (28-NOV-2001). XX DR Genbank; AB052632; Positions 1 647. XX CC 9bp target site duplications. XX SQ Sequence 647 BP; 216 A; 103 C; 109 G; 219 T; 0 other; gagaaccaat gaaaagagtg aagtacagaa ggtaatcacg ttaagaaaaa tgatgtgaga 60 aacgcctagg agtcttccgg ctagctccac aaggtggtgg gctagacgac ctggattcga 120 agtttcaccc cttctaatta ttgagtaaat ttcacaaaac tacaggtatt ttgacgaaat 180 tatcacaaaa ctacagattt aaggagttgt atcataaaac tacacattta gcaccaaatt 240 tatcacaaaa ctgcagattt taggttaagt atcacaaaaa tacatattta atattgaact 300 tatcacaaaa ctacaacttt tggagtttaa atccctagca ccattgttat ggtgtagcta 360 taaacatgat taaattggtt ctaaacccgt agttttatga taatttagtt tctaaacgtg 420 tagttttgta acacttcatc ttaaatgtgt agttttgtga caaatttggt gctaaatgtg 480 tagttttgtg atacaactcc ttaattctgt agttttgtga tagtctagtc atagtatctg 540 tagttttgtg aaatttactc ctaattattt gatattaggt ccttccctaa tattcgcgtc 600 ttttttgtta agaaaaatga tgtaaccatc tataaggacc caatcca 647 // ID SZ-52 repbase; DNA; ORY; 13106 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE Rice gypsy-type retrotransposon SZ-52, incomplete sequence. XX KW LTR retrotransposon; GYPSY superfamily; SZ-50; SZ-52. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-13106 RA Jiang N. and Wessler R.S.; RT "SZ-52: a gypsy-type retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 106-106 (2002). XX DR [1] (Consensus) XX CC SZ-52 is a gypsy-type retrotransposon. It has 746bp LTRs. CC Incomplete sequence. Related to SZ-50. XX SQ Sequence 13106 BP; 4413 A; 2714 C; 2907 G; 3022 T; 50 other; tgttgtagca gggtgcaaac accttttcct ccaattcggt caaaacacta cgaggttttg 60 caagacctaa gtatccagag gggaaaacac tcattctgag tggaaactac ctttccaaga 120 ggaagaacac cttcccaaaa agaaaatacc ttcccagagg aagaacactt attcgaatag 180 aaaatacctc ttcgggtgaa gaacacctta ttagggacat tacataatcg ctaatacaac 240 tacacatatt ttggacaagt tacaatttca caggtgtttt ccaaggatga aagagaaggc 300 aaagggggaa ttcgaattcc caggaggaag aagacggtcc aggacggaaa atgcattttt 360 cccaagagtt cgaggaagag cactacccga acaagagaag atgccaaggg aagattccct 420 ggggaccacc ttcaaccact ctcgccagct agcacctaaa agactaaaag acccctggag 480 atgtactaga atgcccccac agacgctgat gtggcagggg cattagagta aacttacaaa 540 gacccacagg ggtaaaaatg taatctcacg tgtacgacca ccggttataa aagccagtca 600 aaaacctgta gcaggacaag acatcttgaa tacaaaagta atcctcaaaa gttgtgtttg 660 ctgttcgagc tcgtttctaa ggataggcgg gaaaacactt ctttccggcc tatccccgat 720 cttgttcgtg acctaaggtc acaacagtgg caccgtccgt ggggacggaa agtctccatt 780 gaattgggct caaacagtaa atgcgacgtt ctcaacgaca gaagactgtg ccagtacgct 840 atacaggagc ttttgcaagc gcgacagctg cactcgagag agagtgggaa aaggcagtgg 900 aagaaagtga cttagcaaga gcaacggaaa cacttgataa gctgtgggca gagatggcca 960 agacatccac agcagcagga ggtaatgaaa caactcaaga agaaagaatt gctggtgcgg 1020 tggtggaaga aacagggaaa acacccatga gtgatgtaga gcttgctgaa ttggtccaag 1080 cgcaaggggc tgtcatggtg agtaaaggac aatatgagga tcaagtgatc agtgtgcaat 1140 accaggggct agggaaaagc aatcagatca ggcaaaagga gatgcccagg gggagaacaa 1200 agaaggagaa agtatcaaag ccacccaagc tcaagatcta ccacgaaccc aagctcccag 1260 tcaagtacaa aacccatctc aggctcaaat tcccattctt acccagaata cacctcaagc 1320 tcaaatcacc attcctactc agaacctagc tcaaaccttg atccctagcc aaaaccaaat 1380 tcctattcaa acgcacattt ctttccagcc gcatattcca attcaaactc aaaatcctaa 1440 ccaagtacaa tatcctcaaa cacaattaca tcaaacccac ccagttcttc ccaatcaaat 1500 ccaaatcccc caacctcata tcctacaaag taatatccca cgaacacaac tcccacaaaa 1560 tgatacacca caaatacaag ttccacaaac ccaaatacca cagattcaaa catctttgcc 1620 caacttcaca catacgcaat caacaaacac tcaagcagct caaaaccatc accaagtccc 1680 ccaaggtttt tcccttttcc atatgcaaca accagagatg atgtttgaac aagggtacat 1740 cccacaaatg gccaaccata tacaatatgc aggtcaaata ccgaaccaag ccttcaattc 1800 cagcccacac aaccctattt tcaaccaacc aggggggcca aaacggccaa aggttggcat 1860 gggcctaaaa cnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1920 nggttcgttt gtgcgaagaa acaccctttt ttggcctgcg gtcgactcct catagtaccc 1980 ctgaagcagc aggtggagta tgataccacg aaagctaagc atactcccaa caatgctagt 2040 aaggagtagc attatcatgg tacactacca ttccaccaat gacaatctat tcatgggaac 2100 atatgagaga cacctttcga gcaggattca ttggggcgta tgaagaacca aaagaggcag 2160 atgacttgta tgccatgaag cagcttccag gggaaacatt gagaagtttc atcgtgaagt 2220 tttcaagggt aagatgtcag atcaggcatg tagatgatga aatgctcata gcggcagcaa 2280 aaagggcatt gctacccggt cctcttcgtt ttgatcttgc tagaaataga ccaaagacag 2340 caaaagactt gtttgaaaga atggaaagtt ttgcaagagg agaagaagat gagttgagag 2400 tgcaagagga agaagccgtc ttgttgggaa aaaagcagtc aaagaacaag caaatttccc 2460 aaggggaaga acaaaaggga gagaataccg gaaagccctg gaaaaagttc aagtatgact 2520 ataaataaga tcagaaaaaa caggtaaatt ttatcggaga tggatccaac aatgaaagag 2580 aaaaaggaaa acatcaatgg gacaacactc gcagagggag aaacaattgg gggcaatctg 2640 gaaaaggtcg aggacaatgg tggaattcag gcagaggtag aggacgatgg tggaacaatg 2700 aaagaggaaa aggaagagaa aataaaccta accaaaccaa attttgtcaa acacatggac 2760 caggaggtca ttccacagaa gaatgttaca gtaagttctg tcatatacat ggtccgggag 2820 ggccattcca cagaagaatg caggcaaatg actcacttgt tggaaaaaca cgtaaatcga 2880 tatgagaaca agtatgaagg agctcgtgat caacgaggac aaaacgccat agaagcaccg 2940 caagttatga agatagaggc aattgaagaa agtgcccaaa agagtgataa atgccataac 3000 tgggggctct tcattgggag ttgagtcaaa aggcaaagaa aagcatatgt cagacaggta 3060 aatcgtgtcg ggacaagcta tcagtcgaat ccaccagtat actcaaaaac ggtaatttcc 3120 tttgggcctg aagatgcaga aggaatattt ttccctcatc aagatccttt agtggtctca 3180 gtggaaatag cacaatgcga agtgcaaaga gtgttaatcg atggaggaag ttcagcggat 3240 gtgctgtttt acgatgcttt caagaaaata caaataccag aagataggtt aacaaacgca 3300 ggagtacctt tacaaggttt tggtggacaa caagtacatg caattggaaa aatatcttta 3360 caagtggtct ttggaaaagg cactaatgtg agaaaagaag agatagtatt tgatgtggtc 3420 gatatgccat atcagtacaa tgcaattctt ggaaggtcaa caatcaatat ttttgaggcc 3480 ataatacacc acaactacat atgtatgaag ctcccaggac caaggggagt aataacggtc 3540 cgaggagaac agcttgcagc aagaaagtat gagcttcaag gaacaccaag tgtgaaagga 3600 gtacatgtgg ttgaccaaaa acagggagaa tacataaaaa tacaaaagcc aattcctgaa 3660 gggaaaacaa agaaagtaca gttggatgaa catgaccctg gaaagttcat tctgatagga 3720 gaaaacttgg aaaaacatat tgaggaagaa atcttaaagg tagtaaaaga aaacatggct 3780 gtatttgcat ggtcaccaga tgagttgcag ggagttgata gaagtctaat tgagcacaac 3840 ctagcgatta agtcaggata caagcccaaa aaacaaaaat tgagaagaat gtctacagat 3900 agacaacaag ctgcaaaaat tgaacttgaa aagttgttga agacgaaagt cataagagaa 3960 gtgatgcacc cagaatggct ggcaaatcca gtgttagtaa agaaggcaaa tggcaagtgg 4020 agaatgtgca ttgactttac agacctcaac aaggcatgcc caaaagatga ttttcctttg 4080 ccacggatag accagttggt agatgccaca gctagatgcg aactaatgag tttcttagac 4140 gcatactctg gctatcatca agtttttatg gtgaaggagg atgaggaaaa gacatcattt 4200 ataacaccat ttggaactta ttgttttatc agaatgccat ttggtttgaa gaatgcagga 4260 gcgacttttg ccaggctcat aggaaaagtc ttggctaagc agttaggacg gaatgtcgag 4320 gcatacgtag atgacattgt ggtaaagagt aaacaagcat ttacccatgg caaagatttg 4380 caagaaacat ttgaaaacct gagaaaatgc tcagttaagc ttaatccaga aaagtgtgtt 4440 tttggcgtta gagcaggaaa gttacttggt ttcttggtgt ccaaaagagg aatagaggca 4500 aatcctgaca aaatcgcagc aatccatcaa atggagccgc caaaaaacac aagagaagtg 4560 cagaggttga caggccgaat ggcatctttg agtagatttc tatctaaatc agcagaaaag 4620 ggattaccct tcttcaagac tttgaggggg gcaaacacct tcgagtggac tgctgaatgc 4680 caacaagctt tcgatgactt gaagaaatac ttgcatgaaa tgccaacatt agcaagtccg 4740 ccaaaaggtc aacctcagtt aatgtatgtg gcagcaactc cagcgacagt tagcgcagtt 4800 ttggtacaag aagaagaaaa taggcaagtg ccggtatact ttgtctcaga agcattacaa 4860 ggaccaaaaa cacgatactc agaagtagaa aagttgattt atgcaattgt gatggcttca 4920 agaaagttga ggcattattt tctgtcgcat gacataacaa taccatcggc atacccgata 4980 ggagaagtgt taacaaacaa ggaagtcgcg gggagaatag caaaatgggc aatggaactc 5040 ttaccttttg acctgaaata catatcaaga acagccataa agtcacaagt actagcagat 5100 tttgtggcag aatggactcc caatgaggta gaacaacagg aagaagtcga aaaaccatgg 5160 atagtattct ccgatggagc atgcaatgcc gccggagcat gagccgctgc agttgtgaaa 5220 acaccaatga agcaaacgtt gaagtattct gttcaattag cttttccttc cacaaacaac 5280 acagcagagt atgaaggcgt tttgttggct atgagaaagg caagagcgct aggggctcgg 5340 cggttaatag tcaaaactga ctcaaagttg gtagcaggtc acttttccaa atcttttgaa 5400 gcaaaggagg aaactatggc taaatatctg gaagaagcaa ggctgaatga gaaacatttc 5460 ttgggaataa cggtaaaagc cataacaaag gaagaaaatg gagaagctga tgagctagct 5520 aaggcagccg caacaggtca accattggaa aattcatttt tcgatataat cacccagcca 5580 agttacgaaa agaaagaagt agcatgcata cagagagaag gagattggag agaaccgatc 5640 ttgaaatacc ttgtcagtgc acaacttcca gaaaaggaag aagaagcaaa gagaatacaa 5700 ctaacgtcca agaaatacaa agtggtagag ggacagttgt ataaaagtgg agttactgct 5760 cctttgttaa agtgtgtaac aagggaagaa ggcatgaaga tggtggtaga aatacatgaa 5820 ggcttgtgtg gagctcatca agcaccacgg tcagtggctt caaaagtcat aagacaagga 5880 atctattggc caacaattat gaaagataca gagaaataca taaagacgtg caaagcatgt 5940 cagaagttcg gtccaatgac aaaagcacca cccaaagaac tgcaaccaat tccgctggtt 6000 tggccttttt acagatgggg aatagatata gtaggtcctc ttccaagagc gaagggagat 6060 ctgcgctttg tcgttgttgc aattgaatac ttttcaagat ggattgaggc agaagcagtg 6120 gcaagaataa cttctgcagc agtacaaaag tttgtttgga agaacataat atgtcgattt 6180 ggagtcccaa aggaaatagt atgtgacaat ggaaagcaat tcgaatctgg aaaatttcaa 6240 gacatgtgta aaggccttaa tttgcaaatc aactttgcct ctgtaggcca tcctcagaca 6300 aatggagctg tggaaagggc aaatggtaaa atcatggaag ctatcaagaa gaggttagaa 6360 ggatcagcaa aaggaaaatg gcctgaggac ttgctatcag tgctttgggc actaagaact 6420 acggtagtaa ggtcgactgg catgacccct ttcagattgg tttatggcga tgaagcaatg 6480 actccaagcg aagtaggggc acattctcca agaatgatat ttgaccaaaa agatgaagaa 6540 ggaagagaga taactcttga aatgctagat gaaataaggg ttgaagcttt ggagaagatg 6600 gcatcataca cagaaggaac aaagagctat tacaaccaaa aagtaaagac aaggccgatt 6660 gaagaaggag atttagtctt gaagaaagtg ctcaatgagg tagctgttgg aaaactcgag 6720 tcaaagtggg aaggaccatt catagtcaaa aagaagacag aaacgggagc attcaagtta 6780 gcatatcttg atggtgagga gttaaagcat acttggaatg ctatttcttt aaagaaattt 6840 tatgcctgaa aaaaaaagaa gagaaaaaaa aagaaaaaaa agagagagag aaagagaaaa 6900 aggagaacac gggagctcga gtttgtagta tactcactca gatgtaaata cgaatgatat 6960 ccaagttaat gtatataaac aggacgtagg gtttttatcc ataatggagg cccgaacctg 7020 tataaaaaac atgcctctgt gtatgattgc aatagaactc cgcacgctcg gagtcaaata 7080 cattcgacta acaaagtcga caaaatagaa ctccgcacgc tcggagtcaa atacattcga 7140 ttaacaaagt cgacaaaata gaactccgca cgatcggagt caaatactct cgactaacaa 7200 agtcgacaaa atagaactcc gcacgctcga agtcaaatac attcgactaa caaagtcgac 7260 aaaatagaac tccgcacgct cggagtcaaa tacattcgac taacaaagtc gacaaaatag 7320 aactccgcac gctcgaagtc aaatacattc gactaacaaa gtcgacaaaa tagaactccg 7380 cacgctcgga gtcaaataca ttcgactaac aaagtcgaca aaatagaact ccgcacgctc 7440 ggagtcaaat acattcgact agcaaagtcg acaaaataga actccgcacg ctcggagtca 7500 aatacattcg actagcaaag tcgacaaaat agaactccgc acgctcggag tcaaatactc 7560 tcgactaaca aagtcgacaa aatagaactc cgcacgctcg gagtcaaata cattcgacta 7620 acaaagtcga caaaatagaa ctccgcacgc tcggagtcaa atactctcga ctaacaaagt 7680 cgacaaaata gaactcctca cgctaggagt caaatacttt cgactagcaa atttcgacct 7740 cgtcactcct tcgaaaggtg aggaggacgg cggttttcga actattttgc cttagtccaa 7800 aaccagctca ggaatgctcg aactctattc tcgttcgagc tcaaaaagcg gaaaatcagc 7860 gtgacgaggt aaaacacgtt tcgacctcgt cactccttcg aaaggtgagg aggacggcgg 7920 ttttcgaact attttgcctt agtcctaaaa ccagctcagg aatgctcgaa ctctattctc 7980 gttcgagctc aaaaaacgga aaatccgcgt gacgaggtaa aatacgtttc gacctcgtca 8040 ctccttcgaa aggtgaggag gacggcggtt ttcgaactat tttgccttag tccaaaaaaa 8100 ccaactaaag aatgctcgaa ctctattttc ccctcgctcg agctcaaaag gcggaaaatg 8160 cacatgacga gataaagtac gtttcgattt cgtaacttct tccaaagata aggaggacgt 8220 agtttaccta agggtgcttg cacaattgaa ataaagagca tttataaaga aaagaagaaa 8280 ggaagggttt atttgatgtt aagaaggtat aacaagttac atacaaactc tacaaagaag 8340 aaagaaaaga gtcgggataa acaatgttga gaggagaagg cattactgta tatgaaacta 8400 ttgaataacg ccttttccat attctacgtt ggcgttcgga tggttggaag ttttgccaaa 8460 aggctttact agcaagatta ttgttcgaac gccgttccct aaactcaagt acaaagtcac 8520 gtaaactgtc atgtcgatgg cttcgttgcc atcggaaaaa cttaaaagca aatatacaag 8580 tattatcata ataggcttcg agttcgtcat cggagatggc ggtcctggca gaagaaagct 8640 ttgcagggtc tcgaaatgct aagtgcttca catttcgagt aggcaaagtg ttgttgcgtc 8700 gaatcacaag ttttcgattc gagttaacct gcagcccccc aaagaaaggg aatttccatg 8760 aaaagcatgc aataagagaa aagcattata gtcagctaca ctataaattt ttacaataaa 8820 ggctctcaac cataacggtt ttgaagcagc aaaatagcat tgttttcgaa catacgaagc 8880 atccttaact attcttttca cgaacgtcac acctgtgcgc tcgagctcgg agtactactg 8940 tctttatctt gttggctcga actggccggc tgtgacttta atcttgaggc aagagatgct 9000 cggagagacc tcagggtatc ttcatatcct ttcttcttcc agtaaagcac ttggaaagcc 9060 tttacgatgg gttgagctgc atctcgaagc tgtgcaaatt tggcctcatc attaagcata 9120 ccttgtatat cagctttaag ggtggtaaag tgttcacacc catttgaacg cagacaggcc 9180 gaaaggctct ccacagcagt tttcgagcag cgagatgcaa agggagtaac gctatctttt 9240 agcccaatgg aaaattcctc gaaccatttt cccacagctg ctaaagtatt ttcttccgat 9300 agcaagctga tgtcagcccc tagacttcgc aacgcgattc gaacggtctc gcaacttttc 9360 agaagaagtt ggcggcaact ttcgttctcg agctctaaag cagatatctt ctcgctttga 9420 tttttgcagg cgagttcgag ttctttattc ttcttctcca agacctcaac ttgttccttc 9480 atcttgtctt ctgattcagc gcgttgtcga gcgacgtctt gatactcgat gatttttcgc 9540 tcgaatgctt tttcacgagc gagtaatttc ttcttttcct cagtaagcaa cttcttttct 9600 tcggaaagct ctttcttttc gccgcttaac ttgcgcacga gatcggtggt gattttcttc 9660 tcgtcggcca ttcgatcaag tttgcagcga agataatccc gatccttttc gagtttagcg 9720 atgcgatcaa gtgatttctt ccatcgcgtg caaatagctc gaagagcttt ccgagcaaca 9780 ccacgttgaa gacgagcaag gctcgcagtc tgcgcatcag aaaataggtt ttaagtcaaa 9840 aaaaatacct gtgcagcaga tacatcaagt gctgcccaag aggacataag atcattttct 9900 tccaaaaact ccttttcaag atcaggagta atcagaactt tctcgagttc atcaccaatc 9960 gaactcaggg ggtggcgata ctttaggtca ttcaaacaca agtttgggcc atgatggcta 10020 ctttccccga gttcattgaa attaggaaga cccataagcc aatgtccatc ttttgcacat 10080 cgttcgctaa aaccaccaag aacgttttgt atcagctctg gggaaggggt tgcgatgaac 10140 ggcagtgacg gaggtggagt ggggttcgaa ctacctgtaa ttcgaacacc tccatcagca 10200 gcactcttcc ctgcttcgga cttttcggcc gcattgacgg gcgtttttgc cttttttgca 10260 accaaatctc tatcagctcg aagagggttt gttgtctcaa cagtatcacc cacttgggtc 10320 gaacaatctt catcgacaac cgtgttggct ggggcaacaa catacagtga agctacttct 10380 tttgtcgaaa gggcaaaact agcatcagct cgaattgggg tgacatggat ggcagaaaga 10440 tcaatacgga tatcatcttc atccaactct tcatcactgt caataacaag ctgcactcat 10500 ttagaactcg gttcaggcgg aggactgctg gcagttttct tccttttcaa atcagctaaa 10560 acagtaggag gaggaaccgt tttgctatca tcagattcag acgagtcgct cgagttgtcg 10620 ctcgaactgt tactcgagtc gctatcatca ctcgagtcgt tctcttcttc atcagctcct 10680 tcctcgcctt cttcttcttc agcattttct tcaccaattt cttcgtcaac atcttccaat 10740 tcaacatcat catcatcatc atcagaagaa ggcttcacag atttcttttt ctttagtttg 10800 gggacaattt caggatgaac ccggacaggg atatcggagc ctagagaggc gaagacccga 10860 ttttgccttt tcccgttttg aagtgtcaaa aatttcaaat gctcatcctt ggtataaggg 10920 ccaagaaatt tccgaactgg gcggaccata tcctctggaa tcacaactac aaggaagaag 10980 ataacaaagg gagaaaataa atcttcttaa ctaagtcact ttttcaagaa aaacaaggtt 11040 cgcaaaaaat caagttcgaa aaggaaactt acgatcagac gaaaccacaa atggaggaag 11100 actggaaggg caatcttctg ggatttctcc aagagtgata tcccagccgc tcgaaagagg 11160 cctaattttg agaagaacaa actcttccac caggtctcgg cagctaaagt tcgaaacaag 11220 ttcttcgatt cgaggttgta tggcagtgaa ctccggcgac aaagagactg atggctcgga 11280 gacagctttc ggtttcttcc cagagaacga aaaaggacaa tccttatcat tcagcaggct 11340 aacagggatt tgatgataaa accacttcga ctgccacttg ttcccccatt ttgctcgaat 11400 agcagacaca gctggccatg gacttccgcg cttcggatga ggagcaaagt ttacacaccc 11460 aaacttcgag ttctgtttgg tgtagtgccg agtacaatgg aagtatgcaa agtcttcagc 11520 ttggagagtc ccaccgcagc ttcgaaccat ctattcgaaa agcccaattc gaactaaagc 11580 attcggagtc aattgaggaa actcaagttt gaacaatttc aggacctcga ccaaaaaagt 11640 gctgcacggg aatttaaacc cggcgtagaa gaaatcctca aacacaagag tgtatcccag 11700 cttgggagaa ggccttgatt ctcccactgg tcgaattaca acatttcgac cagatatcca 11760 accaacatca acaagatcgt ttaagttttt gtccttaatc aaagaggcac caataccaca 11820 agaagtattt tcgtggtttt ttgatttctt ggacttcgac ttttccgcag ttttcttgtt 11880 tttccccatg ttgtgtagtg agaaaggaag aaatcaagca aagcaccaaa actcgaatgg 11940 aagaaggaag aaagagattt agttcgagtc ttttgtgatt tcgagttgat ggcagaacaa 12000 acgagtggtg gcgtaggtca cgtgatagcg acccctcctg gccttatata gcgcagggtg 12060 gtaagggtcg cgggtttacg agcggacacg aaacccaaag cgacgcgacc ccttaagcgc 12120 accaatgaaa taccagcacg tggcataaaa aaaacaacat ttaaaaaata ataaataaat 12180 aaataaaaat aaaaaataat aagaataaaa ataaaaataa tgaatagtaa acgtggcata 12240 tatgcatatt tgaatagtgt gtttcgaccg aataggagga cggcggtttt cccccttttt 12300 tccataaact caagcacggt ttcggccgaa aatacacatc gcccttaccc gtgaggggct 12360 tgttgtagca gggtgcaaac accttttcct ccaattcggt caaaacacta cgaggttttg 12420 caagacctaa gtatccagag gggaaaacac tcattctgag tggaaactac cttttcaaga 12480 ggaagaacac cttcccaaaa ggaaaatacc ttcctagagg aagaacactc attcgaatag 12540 aaaatacctc tttgggtgaa gaacacctta ttagggacat tccataatcg ctaatacaac 12600 tacacatatt ttggacaagt tacaatttca caggtgtttt ccaaggatga aagagaaggc 12660 aaagggggaa ttcgaattcc caggaggaag aagacggtcc aggacggaaa atgcattttt 12720 cccaagagtt cgaggaagag cactacccga acaagagaag atgccaaggg aagattccct 12780 ggggaccacc ttcaaccact ctcgccagct agcacctaaa agactaaaag acccctggag 12840 atgtactaga atgcccccac agacgctgat gtggcagggg cattagagta aacttacaaa 12900 gacccacagg ggtaaaaatg taatctcacg tgtacgacca ccggtaataa aagccagtca 12960 aaaacctgta gcaggacaag acatcttgaa tacaaaagta atcctcaaaa gttgtgtttg 13020 ctgttcgagc tcgtttctaa ggataggcgg gaaaacactt ctttccggcc tatccccgat 13080 cttgttcgtg acctaaggtc acaaca 13106 // ID OSTANR89 repbase; DNA; ORY; 404 BP. XX AC X55429; XX DT 11-NOV-1996 (Rel. 2.2, Created) DT 11-NOV-1996 (Rel. 2.2, Last updated, Version 1) XX DE Rice tandem repeat units R8-R9. XX KW Tandem repetitive sequence; OSTANR89. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-404 RA Ohtsubo H.; RT "Direct Submission."; RL Direct Submission to Repbase Update (02-NOV-1990)Ohtsubo H., RL Institute of Applied Microbiology, University of Tokyo, 1-1-1, RL Yayoi, Bunkyo-Ku, Tokyo,. XX RN [2] RP 1-404 RA Ohtsubo H., Umeda M. and Ohtsubo E.; RT "Organization of DNA sequences highly repeated in tandem in rice RT genome."; RL Unpublished. XX RN [3] RP 1-404 RA Ohtsubo H., Umeda M. and Ohtsubo E.; RT "Organization of DNA sequences highly repeated in tandem in rice RT genome."; RL Jpn. J. Genet 66, 241-254 (1991). XX DR GenBank; X55429; Positions 1 404. XX CC repeat_unit 1..134 CC note="R8" CC repeat_unit 135..404 CC note="R9". XX SQ Sequence 404 BP; 108 A; 75 C; 115 G; 106 T; 0 other; ccctagagat actaaatttg gagaggtgga cctccaaaga tttttctaga aatgacttac 60 cataggccac gaagcagcgg ttgtttcggc gaaacgtcga atatctgagg gtccacaact 120 ggttttcaac gaggtggtta gtataggaat ggcacatagg acgttagggt ggatagttta 180 gatgatgtcg gtgtcaggcg cgtcgactaa ccgcgccgtt aaggtaggct ggcgggtgcg 240 acaccgcgta atgtagatgg agaattctgt gcgaaattaa aacttagata acgttgcctt 300 ccggtcatgg aattgagcta ggtttttttg atggctgcag aatcacggga ctcccactag 360 agatactaca tttggagagg tggacctcca aagatttttc taga 404 // ID COPIA2-I_OS repbase; DNA; ORY; 4509 BP. XX AC . XX DT 04-APR-2005 (Rel. 10.03, Created) DT 23-AUG-2005 (Rel. 10.03, Last updated, Version 2) XX DE O. sativa Copia LTR retrotransposon - internal consensus. XX KW Copia; LTR Retrotransposon; Transposable Element; COPIA2-I_OS; KW Interspersed repeat; reverse transcriptase. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-4 RA Gentles A. and Jurka J.; RT "Rice Copia LTR retrotransposon."; RL Repbase Reports 5(3), 47-47 (2005). XX DR [1] (Consensus) XX CC 962 bp LTR is COPIA2-LTR_OS. This copia-type retrotransposon CC appears to have been active recently in the rice genome, as there CC are numerous intact copies which are 99% or more similar to the CC consensus. The internal sequence contains a long uninterrupted CC ORF that has an integrase domain. The element is flanked in the CC genome by 5 bp TSDs. XX FH Key Location/Qualifiers FT CDS 37..3942 FT /product="COPIA2-I_OS_1p" FT /translation="MAGFADALRPDKFTGVHFKRWQIRVTLWLTAMKCFWV FT STGKPEGVLTAEQQKQFEEATTLFVGCILSVLGDRLVEVYMHMTDAKELWD FT ALNTKFGATDASNDLYIMEQFHDYKMADNRSVVEQAHEIQTMAKELELLKC FT VLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLDVEEKAREK FT DAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQDERT FT CFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTVF FT SVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGT FT VDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKH FT GYFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDEANVWHSRLCHINFGL FT MSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSD FT LCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVEN FT QLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKN FT RTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGR FT KPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK FT SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTE FT HTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPD FT ADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEK FT YKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVK FT TAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFD FT KTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKS FT FLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKP FT SPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR FT FTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDE FT IKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDL FT LMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLR FT NSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPM" XX SQ Sequence 4509 BP; 1251 A; 836 C; 1151 G; 1268 T; 3 other; atccaaaaac cttattatag gcactgtgat tttactatgg ctggttttgc cgatgcactg 60 aggccggata aattcaccgg tgtgcatttt aagagatggc agatcagggt cactctgtgg 120 ctgacagcta tgaaatgctt ctgggtgagt actggcaaac ctgaaggagt tcttactgct 180 gaacagcaga agcaattcga ggaagccact actctctttg tgggatgcat tcttagcgtt 240 cttggcgatc gtctggtcga ggtgtatatg catatgaccg acgctaagga gttgtgggat 300 gcactgaata ctaaattcgg tgctactgat gctagcaatg atctgtatat catggagcag 360 tttcatgact acaaaatggc tgacaaccgt tctgtagtcg aacaggctca tgagatacaa 420 accatggcta aggaactcga actccttaag tgtgtcttac ccgacaaatt tgtggccggg 480 tgcattattg caaaactacc tccatcttgg aggagtttcg gtactgcact caaacacaag 540 agacaggaat actccgttga ggggttgatt gcgtctcttg atgttgagga gaaagctcgg 600 gaaaaagatg ccgcgtctaa gggcgatggt gggcagtcca gtgccaatgt tgtgcacaag 660 gcccagaaca agagcaaggg gaaatacaaa gctcagcaga ccaccaactt caagaagcag 720 aagaagaaca acaacaatcc taatcaggat gagaggactt gctttgtgtg tggccaagtt 780 ggtcatctgg ctaggaagtg tccacarcgc aaggggatga aggcacctgc agggcagact 840 tctaagtctg ctaatgtgac cattggcaac actggagatg gaagcgggta tggtaattta 900 cctactgttt tttcagttaa tcaatctact aattggtggg ttgatactgg ggccaatgta 960 catgtttgtg ctgacatctc attgttttct tcttatcagg tcgcacgggg ttccaccgtc 1020 ctaatgggga atgggtcaca tgcttctgtt catggtgttg gcacggtaga tctgaagttt 1080 acttcgggaa agatcgtgca gctgaagaac gtgcagcatg tcccttctat cgacaggaat 1140 cttgttagtg gctcccgtct gactagagac ggatttaagt tggtttttga gtctaataaa 1200 gtagtcgtgt ctaaacatgg atattttatt ggtaaaggtt atgagtgcgg aggcctgttc 1260 cgcttttccc tttctgattt ctgcaataag tctgtgaacc atatttgtgg cagtgtggat 1320 gatgaggcta atgtttggca ttcacgttta tgtcatatta attttggctt gatgtctcgg 1380 ctttccagca tgtgtttaat tcctaagttt tccattgtca aaggttctaa gtgccatagt 1440 tgtgtgcaat cgaagcaacc tcgcaagcct cacaaggctg ccgaggagag aaacttggca 1500 ccactagaac tcctacattc agatctttgt gaaatgaatg gggtgttgac gaagggtgga 1560 aaacgatatt tcatgacatt gattgatgat gctactagat tttgctatgt gtacttgttg 1620 aaaacgaaag acgaggctct agactatttt aaaatttata aggcagaagt tgaaaatcaa 1680 cttgacagaa agataaaaag gcttaggtct gatcgtggtg gagagttttt ctcgaacgag 1740 tttgacttat tctgtgagga acatggcatc atacatgaga ggacgcctcc ctattctccc 1800 gagtctaatg ggattgctga aaggaagaac cgcacactga ctgacttggt gaatgccatg 1860 ttggacaccg cgggactgcc taaggcatgg tggggggagg cattgttgac ctcaaatcat 1920 gtgttaaaca gagttcctaa cagaaataag gacaaaacac catatgagat atggattggt 1980 agaaaaccat cactttctta tttgcgcaca tgggggtgct tggcgaaagt caatgtacca 2040 ataacgaaga agcgcaaact tggacctaag actgtggact gtgtttttct gggatatgct 2100 catcatagca ttgcctatag atttttaata gttaaatccg aggtaccgga catgcatgtt 2160 ggtacaatta tggagtctcg tgatgctacc ttctttgaga gctttttccc aatgaaggat 2220 acacatagtg gttcgaacca accctctgaa ataattccca gttcaatcac accaccagaa 2280 caaactgaac atacacatga acttgtctct gaggaggatg tcagtgaagc tcctcgaagg 2340 agtaagagac aaaggacggc taagtctttt ggtgatgatt tcactgtgta cctcgtggat 2400 gacactccta agtcaatttc agaagcatat gcatctcctg atgcagacta ctggaaggag 2460 gctgtccgta gtgaaatgga ttccattatc gctaacggga cttgggaggt gacagagcga 2520 ccctatgggt gtaaacctgt ggggtgcaag tgggtgttca agaagaagct taggcctgac 2580 ggtactattg aaaagtacaa ggctcggctt gttgctaagg gctatactca gaaagaaggc 2640 gaagatttct ttgacactta ctcacctgtt gctagattga ccacaattcg tgtgctactt 2700 tccctagcag cctcacatgg tcttctcgtt catcaaatgg acgttaagac agcttttctt 2760 aatggagagc tggatgagga gatctatatg gatcaacctg atgggtttgt agttgaaggt 2820 caagaaggca aagtgtgcaa attgttgaag tctttgtatg gtctgaaaca agctcctaag 2880 caatggcatg agaaatttga caaaacattg acatctgcag gctttgcagt caatgaggca 2940 gataaatgtg tgtactatcg ccatggtggg ggtgagggag ttattttgtg cttgtatgtt 3000 gacgacatac tgatatttgg gacaaacctt gaggtgataa atgaggttaa atcattcttg 3060 tctcaaaatt ttgatatgaa agatttggga gtagctgatg ttatcttaaa cattaagcta 3120 attagaggtg agaatgggat tacactcttg cagtcccatt atgtggagaa gatcttgaat 3180 cgctttggct acattgatag taagccttct ccaacacctt atgatcctag cttgttgctt 3240 cgcaagaaca agagaattgc taggaatcaa ctggaatact cccaaatcat tggctcgttg 3300 atgtacctgg ctagtgcaac taggcctgat atctcctttg ctgtgagcaa gttgagccga 3360 tttacctcta atccgggaga tgatcactgg cgtgcgcttg agcgagtaat gcgctatctg 3420 aaaggtactg tggaattggg gcttcactat actgggtatc ctgcggtact ggagggttat 3480 agtgattcta actggatctc tgatgtggat gagatcaaag ccactagtgg atatgttttc 3540 acactgggtg gtggtgctgt ttcatggagg tcttgcaaac agacaatttt gacgaggtca 3600 accatggaag cagagctaac ggcactggat actgctactg ttgaggcaga atggctgcgt 3660 gatctattaa tggatctgcc tgttgttgaa aaaccggtgc cggctatcct tatgaactgt 3720 gacaatcaaa cggtaattgt caaagtgaat agttctaagg ataatatgaa atcgtctaga 3780 catgtgaaaa gacgattgaa gtctgtcagg aaattaagaa actccggagt tataacgttg 3840 gattacatcc aaacagcgag aaacctggca gatcccttca cgaagggact atcacgaaat 3900 gtgatagaca atgcatcgaa ggagatgggt ttgagaccca tgtgagttat actatggtgg 3960 taacccagtc tatgtgatcg gagatcccgt gaattagatc ctgggaagaa caaaccatta 4020 ataaactaga ggagagtacc aatatatata ccctctccaa gtgaagatgc atatactctc 4080 gtgagctgca aggcaggttg gctatgcctt aatgagttct gttggcttta attagcraag 4140 atgttgtcct gcagagcatt cttgaargaa ctcacctttg tgagcttgac tgttggtcgc 4200 agtctatgaa gattttgggt gaatcttcta ggaagcttac taaagaccta ggagtatgac 4260 ttatacgctc cacccgaggg gtagtctaca gacggtctag taccagataa gactttgagt 4320 gaaacttgct tgcacaagac ttgcaattca aggcgtagtc cattgttcaa gttgtgagta 4380 agtgtagctt ggagttctag gtggatgttc aaccttaatt ggtctccatc gaaccgctgg 4440 tatataaaca gtacattgga aaaggcaaat ctcagtggga ttttgagatt tggtggggga 4500 ttgttggaa 4509 // ID RIRE3_I repbase; DNA; ORY; 5752 BP. XX AC AP008211; XX DT 10-JUL-2002 (Rel. 7.06, Created) DT 30-AUG-2005 (Rel. 7.06, Last updated, Version 4) XX DE Internal portion of the gypsy-type retrotransposon RIRE3. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW endogenous retrovirus; GYPSY superfamily; Met tRNA as PBS; KW RIRE3_I; RIRE3_LTR; gag; pol. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1..3151 1..5752 RA Kumekawa N., Ohtsubo H., Horiuchi T. and Ohtsubo E.; RT "Identification and characterization of novel retrotransposons of RT the gypsy type in rice."; RL Mol. Gen. Genet 260, 593-602 (1999). XX RN [2] RP 1-5752 RA Jurka J.; RT "RIRE3: Annotation of a recently inserted copy from rice."; RL Direct Submission to Repbase Update (30-AUG-2005). XX DR GenBank; AP008211; Positions 9459207 9464958. XX CC The original sequence (ref. 1) was replaced by a very young CC copy of RIRE3 with identical LTRs. XX FH Key Location/Qualifiers FT CDS 186..992 FT /product="RIRE3_I_1p" FT /translation="MAGSVTRRGLDMTGFVLELRGMCVVLGYPHGVDYQAR FT PLPEQEGEDAEPHAGWEVTAVILSGSPERTSLAVTAGGDSFPAACQNAALL FT AIGTLHQRYPDELQHSPYRYHPRRGGARDHATFRDASSEDDATVVHLARMV FT EAYDAARIDFHQMVRRGMVENNMKILELRQENLQLKKDLDALEAQLHQLKI FT AQGEGSRPKRRRVCRSQKITARKSTSRPELVRQSLAWTCFVETPRAEPAPV FT VPQEGEASGVGSSEGALLLTFRPGPSQR" FT CDS 1133..5737 FT /product="RIRE3_I_2p" FT /translation="MNQFNSSDKFKNNSSRGWLVLIVSSPSLFAGSVWGFQ FT MVTTRRNVNTGEGNQPEGSNPNPQGNPPPPPPPDTNAILTQILAQQANMMN FT AFLHHLQNPPQQNAPPPPPQHSKLAEFLRIRPPTFSSSNNPVDALDWLHAV FT GKKLDTVQCSDEEKVVFAAHQLQGPASLWWDHFQATQPEGQPITWTRFTAA FT FRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLARYAPEDVREDEE FT KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKRRLAN FT FRNQQGANQRVRYTNPYPGGSSSQQQQQQPRPAPRPQFVVRVPQQQQQQNQ FT QGTRAPRPPTPAVQPVQGRRDASGPQRLCFNCFEPGHFADKCPKPRRQQGQ FT APPRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGA FT SHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPF FT PSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYRGPEQPVVFFAPP FT TSVRSSELHQISLSEIPIVREFGDVFPEELPGMPPKREIEFRIDLAPGTTP FT LHKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKR FT MCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIRE FT EDIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFI FT DDILIYSQTEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVIS FT AKGVAVDPETVTAVTEWKQPKTVTQIRSFLGLAGYYRRFIENFSKIARPMT FT QLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQG FT LGCVLMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNR FT CEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADAL FT SRKSHCNTLNVRGIPPELNQQMEALNLSIVGRGFLAALEAKPTLLDQIREA FT QKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGKRVCVPESRELKQLILQE FT AHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQR FT PAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIP FT VKTTYGGNKLAELYFARIVSLHGIPKKIVSDRGSQFTSHFWKKLQEELGTR FT LNFSTAYHPQTDGQTERLNQILEDLLRACVLDFGKTWDKSLPYAEFSYNNS FT YQASIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILREAEAKVRIIRDN FT LKVAQSRQKSYADNRRRDLEFAVDDFVYLRVTPLRGVHRFQTKGKLAPRYV FT GPFRIIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIE FT VREDLTYVERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELK FT AAHPDLFASSSESRGRDSV" XX SQ Sequence 5752 BP; 1410 A; 1509 C; 1517 G; 1316 T; 0 other; agttggtatc agagcctccc ttgaccctag gacgagccgt agatcccaag ccttagcaat 60 attttcaaaa ataaaaatcc tttgttattt gtgaaaaccc gctattctct cttgtcttgc 120 tgcttcattt atcgtcaaaa tctggtcttt aaaaatgttg tttctctttt tgtttttgtt 180 tgtagatggc cggcagcgtt acccgtcgtg gtttggacat gaccggcttc gtcttggagc 240 tgcgaggcat gtgcgtggtc ttgggatatc cacatggagt ggattaccag gccaggccgc 300 tcccggagca ggagggtgag gatgcagagc ctcacgctgg atgggaggtc actgcagtga 360 tcctctccgg ctctcccgag cggacttcgc tggcagtcac cgcgggcgga gactccttcc 420 ccgccgcttg ccagaacgcc gctctcctcg ccatcggcac tcttcaccag cgctacccgg 480 acgagttgca gcactcgccc taccgctacc accctcgtcg cggaggagcc cgcgaccacg 540 ccaccttccg agacgccagc tcggaggatg acgctaccgt cgtgcacctg gcacgcatgg 600 tggaggcgta cgacgcggct cgtatcgact tccatcagat ggtgcgtcgt ggcatggtgg 660 agaacaacat gaagatcctg gagctgcgtc aggagaatct gcagctcaag aaggacctcg 720 atgcgttgga ggcgcagctg catcagctca agatcgccca gggagagggc agccgcccca 780 agcgtcgccg cgtctgccgc agccagaaga tcaccgcccg caagagcacc tccaggcctg 840 agcttgtccg tcagtccttg gcgtggactt gcttcgtcga gacccctcgt gccgagcctg 900 cgcccgtggt tccccaggag ggggaagcct ccggcgttgg tagctcggag ggtgcgctgt 960 tgctcacctt ccgtcctggc ccgtcgcagc ggtagacgag cagttagtag gcttgcgcgt 1020 gtgtttttcc tcgtttgtct ttttgagttg tgtggggcat ggttacaccg gtgtgtggtg 1080 caactatgtc ggagcctgtc ttattttgtt tgcctaagca acttgaactt taatgaacca 1140 atttaatagc agtgataaat ttaagaataa tagtagtcgt gggtggttag ttttaatcgt 1200 cagctctcct tctctgtttg ctggttctgt gtggggtttt cagatggtga cgaccaggag 1260 aaatgttaac accggtgaag gcaaccaacc cgagggcagc aaccccaacc cccaaggcaa 1320 cccacctcca ccaccaccac cagacaccaa cgccattctc acccaaatcc tcgcccaaca 1380 agccaacatg atgaatgctt tcctccacca cctccaaaac ccgccacaac agaatgctcc 1440 accaccacct ccccaacact ctaaactcgc cgagttcctc cgcatccgcc cacctacctt 1500 ctctagctcc aacaaccctg tggatgcttt ggattggttg catgccgtgg ggaagaagtt 1560 agacacggtg cagtgcagcg acgaagagaa agtcgtcttc gccgcccatc agctgcaggg 1620 acccgcgtct ctctggtggg accacttcca agctacgcag cccgaggggc aaccgattac 1680 ttggactcgc ttcaccgccg ctttccggag aacccatgtg cccgccggag tcgtggccct 1740 caagaaaaga gaattccggg agctgaagca aggcaaccgc tccgtgatgg agtatttgca 1800 tgagttcaac aatctagccc gttacgcccc agaggatgtg cgggaagatg aggagaagca 1860 ggagaagttc ttggcaggaa tggaccctga gctgtctgtt cgtctagtct ctggagacta 1920 tccggatttc caacgactgg tggacaagag catccgcttg gaggccaagc acaaggaact 1980 ggaatcgcac aagcgccgcc tggcgaattt ccgcaatcaa cagggtgcta accagagggt 2040 ccgctacacc aatccctacc cagggggatc ctcctcgcag cagcagcagc agcaacctcg 2100 cccagcgccc cgacctcaat tcgtggtgcg cgtcccacag cagcaacagc agcagaatca 2160 acaagggact cgtgcacccc gtcctcctac gccagcggtg cagcccgttc aaggccgcag 2220 ggacgcttca ggtccgcagc ggctgtgctt caactgcttc gagcccgggc actttgcgga 2280 taaatgcccg aagccaaggc gtcagcaagg ccaagcgcct ccccgctcca acaacggcgg 2340 gaaggatgtc attcggggtc gtgtgaatca cgtgacggcc gaggacgtgc tgacaactcc 2400 agacgtcatc gttggtacgt tcctcgttca ttccatccct gctacaattt tgttcgactc 2460 tggagcttcc cactcgttta tatctgtgcc attcgtgggg aaaaatcagt tgggggtaga 2520 aaggcttaga aaccctctgc tcatcaccac ccctggcggg gttatgacag caaagtatta 2580 tagccctgcc gtccctatag aaattcaggg gattcctttt ccttcggacc tgattcttct 2640 agacacaaag aacttggatg tgattcttgg gatgaattgg ttggcacaat tccaaggagt 2700 agtggactgc gcgagacgca ctgttactct gtaccgaggg ccagaacaac cagttgtttt 2760 ctttgcacct ccaacctctg tcagaagttc agaactgcat cagataagtc tgtcagaaat 2820 ccccatagtc agagagttcg gagacgtgtt tccggaagaa ctacctggta tgccgcccaa 2880 gcgagagatt gagttccgga tagatcttgc tccaggaacc actcctctgc acaagcgacc 2940 ctaccgtatg gcagcaaatg aactggccga agtaaagaaa cagttggaag agttgaaaga 3000 aaaggggtat atacgtccga gtacttcccc atggggtgct cctgtgattt ttgtagaaaa 3060 gaaagacaag acgaagagga tgtgcgtcga ctacagagct ctcaatgagg tcaccatcaa 3120 aaacaagtac cctcttcccc ggatcgatga tctgttcgat cagcttaaag gtgccactgt 3180 attctccaag attgatcttc gttccggata tcaccaatta cgtattcgtg aagaagatat 3240 tccgaagacc gcattcacta cgcgatatgg actgtatgaa ttcacggtga tgtcgttcgg 3300 cttaaccaat gctcctgcct tcttcatgaa cttgatgaac aaagtgttca tggaatactt 3360 ggataagttc gttgtggttt tcattgatga cattctgata tactcacaaa cagaggaaga 3420 ccatcagcac catctccgtc tggtgttggg aaagttgcgg gaacatcaat tgtatgccaa 3480 gcttagcaag tgtgagttct ggttgtccga agtcaaattc ttggggcacg tgatatctgc 3540 taaaggagtt gctgtggacc ccgaaacagt gaccgccgtc accgaatgga agcaacccaa 3600 gacagttact cagattcgca gtttcttggg tttggcagga tactatcgga gattcatcga 3660 gaacttctcc aaaatcgctc gacccatgac acagttgttg aagaaagaag agaagtttgt 3720 gtggagcccg caatgcgaga aggcgttcca aactctcaaa gaaaagctgg tttcctcgcc 3780 cgtgttaatc ttgccggata ctcgcaagga tttcatggtg tactgtgatg cttcgcgcca 3840 aggattgggg tgcgtgctca tgcaggacgg tcatgtggta gcctatgcct cacgccagct 3900 acgtcctcat gaaggcaact accctacaca tgacttggag ttagcagcgg tggttcatgc 3960 tctaaaaatc tggcggcact atctcattgg gaaccgctgt gaaatatata ctgatcataa 4020 gagtttgaaa tacatcttca cccagtcgga tctgaatctt cggcaaagga gatggttaga 4080 actcatcaag gattatgatg tgggaattca ctatcaccct ggtaaggcca atgtggttgc 4140 cgacgctcta agtcgaaaga gccactgcaa cactctcaat gtccgaggca ttccacccga 4200 gcttaatcaa cagatggaag ccctgaacct aagcatagtt ggtcgcggat ttttggccgc 4260 gttggaagcc aagcccacct tgctcgatca aatccgcgag gctcagaaga atgatccgga 4320 catgcatgga ctcctcaaga atatgaaaca gggtaaagcc gctggtttca cagaggatga 4380 acacggaacc ttatggaacg gaaagcgggt atgcgttcca gaaagcagag agcttaaaca 4440 gctgatactt caggaagctc atgaaagtcc ttattccatt cacccgggta gtacaaagat 4500 gtacttagac ttgaaggaga aatactggtg ggttagcatg aagcgggaaa ttgcagagtt 4560 tgtggctcta tgtgatgtgt gccagcgtgt caaggcagag caccagcgac cggctggact 4620 tctccagcct ctccaagtgc cggaatggaa atgggatgaa attgggatgg atttcatcac 4680 cggccttcca aaaacccaag gtggatatga ttctatatgg gtagtcgtgg atcgattaac 4740 caaggtagct cgattcattc ctgtgaagac cacttatgga gggaacaaac tagcggagct 4800 ctacttcgct aggatcgtga gtctccatgg tattcccaag aaaatcgtat ctgatagggg 4860 aagccaattc acctctcact tttggaagaa gctccaagaa gagctgggta ctcgattgaa 4920 ttttagcacc gcctatcacc cgcagacaga tggacagacc gagcgtctaa atcagatcct 4980 agaagatctg ctccgcgcat gtgtactaga tttcgggaag acttgggata agagtctccc 5040 ctatgccgag ttctcctaca ataacagcta tcaagccagc atacaaatgg caccttatga 5100 agcgttgtac gggcgcaaat gccgaacacc gctattgtgg gaccaagttg gagaaagcca 5160 agtgttcggg actgatatcc tgagagaagc tgaagctaaa gtcagaatca ttcgggataa 5220 tctaaaggtg gcacagtctc ggcagaaaag ttatgcagat aaccgtcgcc gtgatctgga 5280 attcgcagtg gatgattttg tgtaccttcg ggtcacgcca ttgcgaggtg tgcacaggtt 5340 tcagacaaaa gggaagctcg cacctcggta tgtgggtccc ttccgtatca tcgctcgacg 5400 tggagaagtt gcttaccagc tggagctgcc cgcctccttg ggtaacgtgc atgatgtgtt 5460 ccatgtgtcg caactcaaga aatgtcttcg agtgccatcc gagcaggccg actcagagca 5520 aattgaagtt cgcgaagact tgacctacgt ggagaggcca gtgaaaatcc tggacaccat 5580 ggagcgcagg accaggaacc gggtaatccg tttttgcaag gtccagtgga gcaaccacgc 5640 cgaagaagaa gctacttggg agcgcgaaga cgagctgaag gcagcccatc ccgatctctt 5700 cgccagttct tccgaatctc ggggtcgaga ttccgtttaa ggggggtagg tt 5752 // ID RPO_OS repbase; DNA; ORY; 1992 BP. XX AC . XX DT 20-MAY-2005 (Rel. 10.05, Created) DT 24-OCT-2006 (Rel. 10.05, Last updated, Version 3) XX DE Repetitive element from Oryza sativa - a consensus. XX KW Repetitive element; RPO_OS. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-1992 RA Jurka J.; RT "Putative retroelement from Oryza sativa - a consensus RT sequence."; RL Repbase Reports 5(5), 132-132 (2005). XX DR [1] (Consensus) XX CC This is an unclassified element. It contains a minisatellite-like CC tail and is not flanked by any recognizable flanking repeats. It CC could be a SINE element or an abundant retropseudogene derived CC from an unknown RNA. The youngest elements are 95% identical to CC consensus. One notable characteristics of this element is its CC A-richness, shared with L1 elements. However, it cannot be ruled CC out that it represents a non-autonomous helitron due to the CC hairpin-like structure near its 3'-end (CCGCGCAATTGCGCGG). XX SQ Sequence 1992 BP; 913 A; 244 C; 368 G; 467 T; 0 other; taatctatct attatattat taaaacagct ttgaaaggag gcaccacgtt cgctgtgggg 60 gctagaaatt cccacattaa tcggagaaaa agaaaaaaaa aaaaggagag tccaagtaga 120 aatacaattt aaaaatagct gaaattcgga attaaaaata agcaatattg aaagaagttt 180 ccatataaga acccaatacg agattaatca aaattcgaaa taaaaataaa ataaaatcca 240 aaattagaaa aggaaaggag agtccaagta gaaatacaat ttaaaaatag ctgaaattcg 300 gaattaaaaa taagcaatat tgaaagaagt ttccatataa gaacccaata cgagattaat 360 caaaattcga aataaaaata aaataaaatc caaaattaga aaaggaaagg agagtccaag 420 taggaataca atttaaaaat agctgaaatt cggaattaaa aataaggaat attaaaagaa 480 gagtccatat aagaacccaa tacgagatta attaaaattc ggaataaaaa taaaaataaa 540 tccgaaatta gcaaaagaaa ataaaagaag agttcaagta ggaatacaat ttaaaattag 600 ctgaaattcg gaattaaaaa taagcaatat tgaaagaaga atccatataa gaacccaata 660 cgagattaat taaaatttag aataaaaaat aaaataatat ccaaaattag aaaaattaaa 720 agagagttca agtaggaata caattttgaa acaactgaaa ttgaaaataa aaaaataaaa 780 acattaaaag aacacaatac ggtattaact aattttttta aaaaaataaa ttctgaaatt 840 agaaaaagaa aaataagatt tcaattagga atacaattta taaataacta aaatttgtga 900 taaaaataaa gactattgaa agaaaagacc atctaaaaca catgacgaga taaattaagt 960 aacatgccta taaaggagta gagtggtggc ggttgatacg acatataaaa attgttaata 1020 aaacaccaaa tagaatccta atgacgatta aaaggaggga cgtcaggcag gccgtgaagc 1080 aaacgagtaa ggcggttgcc gggacttcta gaaagtaaaa aaaataaacc ccattgataa 1140 tcatattcga tttttaaaat ctcaatgaca ataaaaagga gaagcagcgg gcggggtgta 1200 taagagtata gttgcagagc cgccgacggt tgacgggact tctagaaaat aaaaaatgaa 1260 ttccaacgat agttatgttc gatttttaga atcacaatga caataaagag taggcggcgg 1320 acgggctgta gaggggcata gtggcatcgt ttgatgggac ttctaaaaat tataaaaaaa 1380 ataaaactac aagtccaatt tttaaaggtt cggaacttct aaaaagtaaa aaaaaaacca 1440 atgataatca tgttcgattt taaaatctca atgacaataa agaagggagg cagcgggcga 1500 gccgtagagg agtacaatgg caaagccgct gacggtttgg cgggacttct agaaagtaaa 1560 aaatgaaccc aaacgataat tatgttcgat ttttaaaatc tcaatgacaa taaagagaag 1620 agacagtgga cgggccgtag aggagtataa tggcaacgtt tgacgggaca tctagaaatt 1680 ataaaaatga aacccaacgt gacaataaac tctaaaaact ataaaatcca atttttaaag 1740 gttccaagaa gaatgaatag aaatagtggt agatcgagca agcaaataaa gaaggagatg 1800 acataagggg tagcaactgg tgtgactttt aaaaactata taattagaaa cacgaggatg 1860 ataaggtttg gtctttcaaa gtcttaagac aatgagatag ctatttaata aattttaagt 1920 aaaatcatac taaaaaatat atgattttgt ttgggtgcta gccgcgcaat tgcgcgggcc 1980 acccagctag tt 1992 // ID RBTVL_I repbase; DNA; ORY; 5949 BP. XX AC AE017121; XX DT 04-AUG-2005 (Rel. 10.07, Created) DT 24-AUG-2005 (Rel. 10.07, Last updated, Version 4) XX DE Rice tungro bacilliform virus like repeat (internal portion). XX KW Caulimoviridae; Integrated Virus; LTR; Interspersed repeat; KW reverse transcriptase; RBTVL_LTR; endogenous badnavirus; RBTVL_I. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-5949 RA Kunii M., Kanda M., Nagano H., Uyeda I., Kishima Y. and Sano Y.; RT "Reconstruction of putative DNA virus from endogenous rice tungro RT bacilliform virus-like sequences in the rice genome: implications RT for integration and evolution."; RL BMC Genomics 5(1), (2004). XX RN [2] RP 1-5949 RA Jurka J.; RT "A recent copy of LTR-retrotransposon related to Rice tungro RT bacilliform virus."; RL Direct Submission to Repbase Update (04-AUG-2005). XX DR Genbank; AE017121; Positions 209328 203380. XX CC LTRs are 99% identical. Present in multiple copies in the rice CC genome. XX FH Key Location/Qualifiers FT CDS 503..5788 FT /product="RBTVL_I_1p" FT /translation="MDISRSLFRRIASRDDNCSDKQKGKYDDIDELKDVAQ FT VDKQLERYQRDTLRAIRPQQVYCMGFFENKNGLYRISREVELSVLTKPVEL FT KIVAKEFENSLKYSGYKYIHQGMYIIGIKGMTRKKLGAKVLITLLDKRWDT FT INKASLGYLEGDMNENMLITYIAPDLMMPVNEFIDKMSFGFQTKGYEEFKG FT TNLLISIEFIGRLTNRSASKYKINVNDVIEKMHSKGIKFMSPLIIDSEERA FT GEKWPISEFIKNKTLSQPENFISYQDSKGNVSIRFTNYKTRASDDLDAESS FT DRDIIDNRRHSISELMEKLDHESEIKYYEDKLRDIADEYNNSMKSEWPKIR FT DKELYFYRELSRIKKQKKEKSLVIEIPRTQEIKIEQIKSEEPREEIQKLDK FT VLSEEEQWEVNEKLLLESYEEENNLIEEIENIEEEDNAEQYNDFIDSLDEE FT GLHNLDNAMEAMEVDLGTGKRKRYGEGSVKNEGERERPARAAGRWPPEKEE FT YSYHYIPGQYRHMGTKRRDFEKPIKFQNQKSDGAILNLAAHDPIDWPNIIS FT IWKGLIVQKYIQNQHNIGNKVEDMITYLETFLGESAKVLWEQWVEKNPNNY FT EELKRAGSNPHNFENIVSNIIIAEDPELGYTTLQNERLKEIEKLTLTSWKG FT IKEFSQHYLYNATTAKQGYNKGIVERYFNKLPDPLGSMIFEEYKKETEGAE FT INISQAITFVFKQLRKICTGIQAQRSMKHSDYNFCNKIIQIPLSYGEDRPR FT NKRNHRYQSRNSNNIKTKKRYFLRRSDNRAPFLHKRNVRRYNPKKTYDKTC FT RCFICNSPDHLSRTCPNKDQKRYSSTYEEQERVLIIDSVNENILVCDDEIK FT DDESIYSIIETDEIENTNEEYESTDEELDLIDELAGLKIELMDQLNCEHDW FT IRGKGDYNIKCAFCIYYPSQDNRVTCSICLKQACAECIKANKQKWRKEIEL FT ESDERILSSRVRVLENRINKLEVELENLKINYDIKALPENKDIQNTEFKEQ FT VITLKDSNTAKIIQLKDAITNFGNKYIVKLPFKEILGIRIPVKVKLSPKVS FT YKILALVDTGCTKNIIHDKYFIKCPEIVHTIDDNKAEVSTDMSGIKKIHNQ FT LAHNVEVYINGTKYIIDEITIRNLSMISDDMIIGLRFLQQSVQTTVIHEQG FT ITFIPYQNNVPYISEVRKRGGARIKPDNLEALNLESEERINEYELSENIDN FT YSFSSYLPKSMELPGKTSWEDRYLLKATKDFEYICREMASQKSEWLTNMSS FT WRLPQLPRGHGERFNHNFRITELQQGLLNLLWQTKNKKEKAHALNGLAYYF FT KNFVPSDQKITEKRAKIQDIPHHEERLLDYREEKSRDGQDKLPMEVEQSMA FT TDKNTKVFSDKILISADPASSMVAFHININNLLQSFPHNKPSSSTKRHDTI FT PQTPYILHNHPNLFLPQYILRTQPKAPCRSCAYKDSCKKKLKSQNPMSTTY FT ENLQPRLSFKTEQTLSCFGQDILDLVWQKFKERQMKIFLGLQDYFFDLLEG FT RERNPAIRVIIYMLPLLRLDDQAISDPSYRFLVLKAEINLQRFRNLPTYNH FT EEISLQTIIDHGLVNSIYATLDQILQSDLGNAVKDVCRRLGHGRYRIIFSS FT IPPKFTPPVRPAIHYIYIMKGQFNFQEDGPSKLSDEEEEIYTTVANHENWR FT LFSEAAEIEEAITTDYEYQLVFQNKITRIFISKFYNQSYEYFKGAGRIIKP FT DFGNECSKKSYYRSLAQWFQKTEPSEIDTVQSAPMIINEDNE" XX SQ Sequence 5949 BP; 2476 A; 867 C; 1070 G; 1536 T; 0 other; taggtttgtc tgaagcatag gtgtggtgta tattgtctga agcataagtg tggtatcaga 60 gcctggtaat catagagaag ctaaatttag aagctaatat tggaaagtta ataaatacca 120 aagataatat cgacataagg tgtagactaa gccatactga agaacatagt tggcactcta 180 ataatagcca actaaattta attgtagatt taatatataa tttctatata aattggagta 240 agagacaaga agatttagag caaaagttag aagatatata taaagaacaa aagcaatttg 300 tagaacaata ttcttttctt aataataagc taaatactac attagaatta ttagaagatt 360 ataagataag gcaaaataaa atttcacaga atagtgatta tattaaagaa ttactagaca 420 aaatcaactc tagtaaaggt aaggaaatag ttttggcttc atctggcata gtctcatctt 480 cacaagccat taattctgaa aaatggacat atctaggagt ctctttagaa gaatagcaag 540 cagagatgat aactgttctg ataaacaaaa aggcaaatat gatgacatag atgagctgaa 600 agatgttgca caagtagata agcagctcga aagatatcaa cgagatactt taagggcaat 660 aaggcctcaa caagtatact gcatgggatt ttttgagaat aagaatgggc tttatagaat 720 atctagagaa gtagaattaa gtgttctaac aaagccagta gaattaaaaa tagtagctaa 780 agaatttgaa aatagtttaa aatattcagg atataagtat attcaccaag gtatgtacat 840 aataggaatc aaaggaatga caagaaagaa attaggagct aaagtgctaa taaccttatt 900 agataaaaga tgggacacaa taaacaaagc atctttaggc tatctagaag gagatatgaa 960 tgaaaatatg ttgataacct atatagcgcc tgatttaatg atgcctgtaa atgaattcat 1020 agataaaatg agttttggtt tccaaacaaa aggatacgaa gagtttaagg gaacaaattt 1080 attaataagt atagaattta taggaagatt gactaataga agtgcctcca aatacaaaat 1140 caatgtaaat gatgtgatag aaaaaatgca ttctaaagga ataaaattca tgagcccttt 1200 aataatagac tctgaagaaa gagcaggaga aaaatggcca attagtgaat ttataaaaaa 1260 taaaaccttg agtcagcctg aaaacttcat aagttaccaa gacagcaaag ggaatgttag 1320 tattagattt acaaattata aaaccagagc ttcggatgat ttggatgcag aatcatctga 1380 cagagatatt atagataaca gaagacatag tatatctgaa ttgatggaaa aattagacca 1440 tgaaagtgaa ataaaatatt atgaagataa attaagagat atagcagatg aatataataa 1500 ctctatgaaa agtgagtggc ctaaaattag agacaaggaa ctttatttct atagagaact 1560 atccaggatt aagaaacaaa aaaaagagaa aagcttggtc atagaaatcc ccagaaccca 1620 ggaaattaaa atagaacaaa taaagtcaga agaaccaaga gaagaaatcc aaaagttaga 1680 taaggtatta agtgaggaag agcaatggga agtaaatgag aaattattac tagagagtta 1740 tgaagaagaa aacaacctga tagaggaaat agagaatata gaagaagaag ataatgcaga 1800 acaatataat gattttatag actcattgga tgaggaaggt ttgcataatc tagataatgc 1860 aatggaagct atggaagtag atttgggaac aggaaaaagg aaaagatacg gagagggttc 1920 tgtaaaaaat gaaggagaaa gagaaagacc agccagggca gcaggaagat ggcctccaga 1980 aaaagaagaa tattcatatc attatatccc aggacagtat aggcacatgg gcactaaaag 2040 aagagatttt gagaaaccaa taaaatttca aaatcaaaaa agtgatgggg ctatactaaa 2100 tctagcagca catgatccca tagactggcc aaatatcatt agtatttgga aggggttaat 2160 agttcaaaaa tacatacaaa atcagcataa tatagggaat aaggtggagg atatgataac 2220 ttatttagaa acatttttgg gtgaatctgc taaagtccta tgggaacaat gggttgaaaa 2280 gaatcctaat aactatgaag agctaaaaag agcaggaagt aatcctcaca actttgaaaa 2340 tatagtatct aatattatca tagctgaaga cccagaatta ggatatacaa ccctgcaaaa 2400 tgaaagatta aaagaaatag aaaaattaac tttaacaagc tggaaaggta taaaggaatt 2460 ttctcaacat tatctatata atgcaacaac tgctaagcaa ggatacaata agggaatagt 2520 tgagcgatat tttaataaac tacctgaccc attaggtagt atgatttttg aggaatataa 2580 aaaggaaact gaaggagctg aaattaatat ttcccaagcc ataaccttcg tgttcaaaca 2640 attaagaaaa atatgcacag gaatacaagc ccaaaggtca atgaaacatt ctgattataa 2700 tttttgcaat aaaataatac aaataccttt atcatatgga gaagataggc ctagaaataa 2760 aagaaaccat agatatcaaa gtagaaatag caataatata aagacaaaga aaaggtactt 2820 cttaagaaga tcagataata gagcaccttt cttacataaa cgaaatgtaa gaagatataa 2880 cccaaagaaa acttatgata agacatgcag atgtttcata tgtaattcac cagatcattt 2940 aagtagaact tgcccaaata aagatcaaaa aagatattct agtacatatg aagaacaaga 3000 gagagtttta attatagata gcgtaaatga aaatatatta gtatgtgatg atgaaataaa 3060 agatgacgaa tcaatatatt ctatcataga aacagatgaa attgaaaaca ccaatgaaga 3120 gtatgaatca accgatgaag agttagattt aattgacgaa ctagccggtt taaaaataga 3180 attgatggat cagttaaatt gtgaacatga ttggattaga ggaaaaggag attataacat 3240 taaatgtgct ttttgcatct attacccaag ccaagataat agagtaacct gtagtatatg 3300 cttaaaacaa gcttgtgctg aatgtataaa agcaaataaa caaaaatgga gaaaagagat 3360 agaattagaa tcagatgaaa ggatattatc tagtagagta cgagttttag aaaacagaat 3420 aaataaacta gaagtggaac tagagaatct aaaaattaac tatgatatta aggcattacc 3480 agaaaataag gatatacaaa ataccgaatt taaagagcaa gtgataacat taaaagacag 3540 taatactgct aaaataattc aactaaaaga tgccataact aattttggaa ataaatatat 3600 agtaaaactg cctttcaaag aaattttggg aataagaata ccggtaaaag taaaactatc 3660 acccaaggta tcatataaaa ttctagcact agtagacact gggtgtacaa aaaatattat 3720 tcatgataag tacttcataa aatgtccaga aatagttcat acaattgatg ataataaggc 3780 agaagtctct acagacatgt ccggaataaa gaaaattcat aatcagctag ctcataatgt 3840 tgaagtatac attaatggaa ctaaatatat aatagatgag attacaataa gaaacttatc 3900 catgataagt gatgacatga taattggcct aaggttttta caacaatcgg tacaaaccac 3960 agtaatacat gagcaaggaa ttacttttat cccatatcaa aacaatgtgc catatatctc 4020 agaggtacga aagcgtggtg gagccagaat caaacccgac aaccttgaag cacttaatct 4080 tgagtctgaa gaaagaatta atgaatatga gcttagtgag aatatagaca actattcttt 4140 ctcatcatat cttccaaaat ctatggaatt gccaggtaag acatcatggg aagatagata 4200 tttattaaaa gctactaaag attttgaata tatatgcagg gaaatggctt cacagaagtc 4260 tgaatggctc acaaatatga gttcatggag actgccccaa ctgcctagag gccatggaga 4320 acgatttaat cacaatttca gaataacaga gctacaacaa gggttattaa acctcttgtg 4380 gcaaacaaaa aacaaaaaag aaaaagctca tgccttaaat ggcctggcat attatttcaa 4440 aaatttcgtg ccctcagatc aaaagataac agaaaaaagg gctaaaatac aagatatccc 4500 tcatcatgag gaaaggttac tagattatcg cgaggagaaa tcccgtgatg gccaagataa 4560 acttcccatg gaagttgaac aatctatggc aacagataag aataccaagg tattctcaga 4620 taagattttg atctcagcag atcctgcttc gagcatggtt gctttccaca taaatatcaa 4680 taacctattg caatcttttc cacataataa accatcatca tccacaaaaa ggcatgatac 4740 cattccccaa acaccataca tactgcataa tcatcctaat ttattccttc cacaatatat 4800 actccggacc cagccaaaag caccatgtag atcttgtgcc tacaaagatt cttgcaaaaa 4860 gaaacttaaa agccaaaatc ccatgagtac tacatacgaa aatctccaac ccagattaag 4920 cttcaaaacg gaacaaactt tatcctgctt tgggcaagac atcctcgatc ttgtttggca 4980 aaagtttaag gagagacaaa tgaaaatatt ccttggactc caagattatt tctttgatct 5040 cttagaaggg agagaaagaa acccagccat acgagtaatc atatatatgc tccctctctt 5100 aagactagat gatcaggcaa tttctgaccc atcctataga ttcctggttc tcaaagctga 5160 gataaatctt caaagattcc ggaacctacc cacatacaac catgaagaaa tatctctcca 5220 aaccattata gatcatggtc ttgtgaattc catatatgca accctcgatc agatccttca 5280 atctgattta ggaaacgctg tgaaagatgt atgcaggaga cttggacatg gaagatacag 5340 gattatcttc tcctcaatac caccaaaatt cacaccacct gttcgtccag caattcatta 5400 tatatatatc atgaagggac aatttaattt tcaagaagac ggtcctagca aactatcgga 5460 tgaagaggaa gaaatatata caacagttgc taatcatgaa aattggagat tattttctga 5520 agctgcagaa attgaagaag ctatcaccac agattatgaa tatcagctgg ttttccaaaa 5580 caagatcaca aggattttta tcagcaaatt ctacaaccaa agttatgaat acttcaaggg 5640 agcagggcgc ataattaaac cggattttgg aaatgaatgc tccaagaaaa gttactacag 5700 aagcctggct cagtggtttc agaaaacaga gccatcagag attgacacgg tgcaatcagc 5760 accaatgata atcaacgaag ataatgaata aagatcttgt catccccgac aaagatcact 5820 attcaagata aggaatctac actattccag ataagtatgg atcttggtgg tcatgggcag 5880 ccagatgaat agaattcttt aagctaaata tgtttttcaa tatatattga taatagaata 5940 tcaataatt 5949 // ID RBTVL_LTR repbase; DNA; ORY; 979 BP. XX AC AE017121; XX DT 04-AUG-2005 (Rel. 10.07, Created) DT 24-AUG-2005 (Rel. 10.07, Last updated, Version 2) XX DE Rice tungro bacilliform endogenous badnavirus like repeat (long DE terminal repeat). XX KW LTR Retrotransposon; Transposable Element; caulimoviriadae; KW endogenous badnavirus; LTR; reverse transcriptase; RBTVL_LTR. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-979 RA Kunii M., Kanda M., Nagano H., Uyeda I., Kishima Y. and Sano Y.; RT "Reconstruction of putative DNA virus from endogenous rice tungro RT bacilliform virus-like sequences in the rice genome: implications RT for integration and evolution."; RL BMC Genomics 5(1), 80-80 (2004). XX RN [2] RP 1-979 RA Jurka J.; RT "A recent copy of LTR-retrotransposon related to Rice tungro RT bacilliform virus."; RL Direct Submission to Repbase Update (04-AUG-2005). XX DR Genbank; AE017121; Positions 203379 204357. XX CC LTRs are 99% identical. Present in multiple copies in the rice CC genome. XX SQ Sequence 979 BP; 312 A; 190 C; 226 G; 251 T; 0 other; tgggcgtgga agaagaaaaa aaacgaagat ttcagaagac tactcaagga ggaatccaga 60 agaaggaatc cagaaggaca ccctataagc ataaaggaac aatatagggt gcggtgaatg 120 acatatcact gtgaagagta aaactttcgg tgaaaaggcc tcgactttag ccagctcccg 180 tgaagataca gtagcgaaga gataagcagg aggcacaggc gacgccatcc ctggcctcta 240 taaaaggaga cgttggcctt cactccggag acacacaaca acaacgaaga caccattcag 300 agcaaagctt ccaagcgcgc tctcaccctc cattccaccg ttcttagtag tagtgacttt 360 agcctacctt gcatagtata ttgaagcaag gagttgtgta ataacgctgt gtaaggtaag 420 aacagcttgc ttgtacctac cttcgggttt cccgaaaggg aaaaccgtat gtaagcttat 480 ctgtttaata tgaagtaatt ttccttaagt attcctgcac gtttgttcta gacaagtgtt 540 tatgctaagg accctatagg agaaacctct tcggtttgtt ctcgttttta gcctgcatct 600 tgcataggcg tctggagaat cggtatccgt agagaagtgt tccctttggg tggaactgcc 660 tggggagacg ataaactctt agctagaaca agtgtgactt ggaatatctt gttaagttgc 720 ttctaaaaag atagataggt gaggcatacg gtgagtaccg agtaggactt tacatcatcc 780 gaagcaagct tctaaggctg tctaaatagg attcgccacc ctgcaaagat cctaaagtta 840 aaatatctct cgaagtgaac agtaatttaa acagtaaact gaatagtgtt tttgaatagt 900 aatcagccga ataaacagta aactgaatag tattcagccg aataaatagt gttttgaaca 960 gtgtatattg tctgaagca 979 // ID rn_179-105_LTR repbase; DNA; ORY; 208 BP. XX AC . XX DT 06-NOV-2006 (Rel. 11.1, Created) DT 08-NOV-2006 (Rel. 11.1, Last updated, Version 1) XX DE LTR element from rice. XX KW LTR Retrotransposon; Transposable Element; Interspersed repeat; KW rn_179-105_LTR. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-208 RA Chaparro C., Guyot R., Zuccolo A., Piegu B. and Panaud O.; RT "RetrOryza: a database of the rice LTR-retrotransposons."; RL Nucleic Acids Res 35(Database iss), D66-D70 (2007). XX DR [1] (Consensus) XX SQ Sequence 208 BP; 51 A; 34 C; 45 G; 78 T; 0 other; tgttaaacaa tagagatgct gctgcttacg ttactgcata actgattcgt ttccgatgct 60 gtataggtgt tttccttgtg tatgtagaat ctgtataggt tagtaatata cgattcggtc 120 ttgagttgta ctattgttgt atctctgtct ggtatataat gacttgaaca gcctccacga 180 gaggtagatt gcctcaatag ttttcaca 208 // ID SZ-61LTR repbase; DNA; ORY; 2410 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 23-MAY-2005 (Rel. 7.07, Last updated, Version 2) XX DE Rice long terminal repeat SZ-61LTR. XX KW Long terminal repeat; RIRE9LTR; SZ-10; SZ-61LTR; retrotransposon. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-2410 RA Jiang N. and Wessler R.S.; RT "SZ-61LTR: LTR from Oryza sativa."; RL Repbase Reports 2(7), 116-116 (2002). XX DR [1] (Consensus) XX CC Related to SZ-10 and RIRE9LTR. XX SQ Sequence 2410 BP; 645 A; 428 C; 561 G; 776 T; 0 other; tgaaagttca agtgacattg atttggtttt gatgattaat aacaaatcca attatgtgag 60 actaatgttt ttataagcat ttctttgcct attctcatgt ggatatgaaa ttggagtgtt 120 ggtggaccta aatcacaagg atgaaatgca tggagatcaa gctatatgta tcactctttc 180 tcttcatgta catattgata tgttcgtata taatatttcc acgtgattgg catatgcatg 240 tgagactaat gttttgtttg agtattatct cttatttagt ctatttacat tgagaacgtg 300 gagatgatga aggtatattt ttattttaat atctatattt gagaaatgcc ttctattctt 360 gtataggata agctctcaat gtttaatatc ttgttatgca tgctcttgct tcacacaaat 420 attttgtatg catacattta gggggagcaa atcctatact ttagttatgc atgtaatcaa 480 tccaagttat tcaccttcat ttaattggga tctttacatt tgaacatata tttgagtata 540 tgacacttgt ggtgttgatt aatactcatc atttattcat atccttttat acatgcgatc 600 ggttggtcaa catgtggagg ttgacaaccg gatcattggg actaataatt ttattgagtt 660 gaatgaaaga aataggtccc aaggattaca aaggtgttga tgctcaagtg atatcattac 720 acctaacaat accaagaatg acaaagtgaa gatattgaag atgtgtgata cgaagtggct 780 attatggcaa gatggtgaag ggcaagcgat gctcggtcgc gatggaccat gcggcggtga 840 agggcaagca aggggcttgg cgccgaagga ccaaatccgg tggtggtaaa gggcgagtga 900 cggctttgtc atgatggacc gtgagagacc atttgaagct acaagtaacc gcatcaatca 960 tttgaagaat atatggtgaa acggtatcgg cattggcgtc cctctagaca atgaaagaag 1020 gatgaaaaaa aggcattcct aatggtataa ttatcttctt atttacattt gagtttagga 1080 atgccgtact attaagaggg atgcaacgtc gaggtgtttg tgtatgtctc ggtgctcaaa 1140 gtgacctatc atagtgctac cttgagagaa gcccaagctt taacctatcc tttgagtggt 1200 tttagacctt gtttttggtt gagttgggta gtcctctgag tgagctttct atagagtcca 1260 agttcatcga aaacggactc ccgagtgaaa agttatagtc gttttactct gtgcttttcg 1320 gaaagtccga aaaattaccg gaaactccga aaattttcgg acattccgaa agtggctgcg 1380 aatatgagat ttgcttctgt aagttttcgg acttgtccga aaatgctttt cggaaactcc 1440 aaaaattaca gtcttggcct ccaacggcta gtttttgagg ggctcgggta tataaactcc 1500 tccacccctc ttttgagggg ctgctgctct tggggagtat tagacacatc caaagccaaa 1560 tagccatccc catttcccta cctttgtggt gcctctttgt gagggggatt tgagaagggg 1620 agagagttgg attgagagag tgaggagttg agagctagtg agcttcactc catcctttgt 1680 gtgcctcttt gtgagaggga tttgagaagg ggaaagagtt ggattgagtg attgagaagt 1740 tgagagctag tgagcttcac tccatacttt gagcactcga gttcatagca agcaaatctt 1800 cgattgtgtt tgttactctt ggagactaag gtctcctaga cggctaggcg ttgccggtga 1860 gcacccaagg ttgtggtgtg ccatggaaag tttgtgaagg cttcgatttc gcctccgcaa 1920 gggaagaaat caatagtgaa accgaggagt gcatttgtgc accctcgtga ggaaagggtt 1980 gaaataggcc tggcccttgt ggctcctcaa cggagacgta ggatccgtgg atccgaactt 2040 cgggaaacaa atcacgcatc tcccctcttg gtttgcccgt tcttgcattc tctcatattg 2100 tgcttgagct tgtttttacc tgatctactt gcatgcttaa ttgatttagt aggtgacctt 2160 atatcttgct tagatacctt atttgtcacc ttttgattca tatacatttt gtttgtttga 2220 gctacaagtt catagctagt gtttattccg ttatccgccg aacttttcga ttgagaccgg 2280 aacttccaat cccataccgg aagtttcgat ttgaatcaaa agttatcatc actctgatat 2340 gctatgaagt tgtgataatt tttaggaacg cctattcacc caacctctag gcgacatcaa 2400 ggtcctttca 2410 // ID KIDDOC repbase; DNA; ORY; 275 BP. XX AC . XX DT 10-JUL-2002 (Rel. 7.06, Created) DT 10-JUL-2002 (Rel. 7.06, Last updated, Version 1) XX DE Consensus sequence of MITE family Kiddo-subfamily C. XX KW Harbinger; DNA transposon; Transposable Element; MITE; KiddoC. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-275 RA Yang G. and Hall C.T.; RT "Consensus sequence of MITE family Kiddo-subfamily C."; RL Repbase Reports 1(4), 25-25 (2001). XX DR [1] (Consensus) XX CC KiddoC is a subfamily of MITE family Kiddo. The estimated number CC for Kiddo in rice genome is about 1200. The consensus TSD is TTA. XX SQ Sequence 275 BP; 88 A; 61 C; 56 G; 70 T; 0 other; ggttgtttgg ttggtatacc cacattacca aagcttgcca tacttattta gctaacatgt 60 ctaacatgtg gccaataaaa ttgaagccac acttcagcca taggagaaca aacttgccac 120 acttttacgt gccaatgaca tgtgggaccc acatcatgat gaaggaatct tgccataagt 180 gtggcagaac caaacagatg cctaacttag tcaaacttgg ctaacttaag ttgtggcatg 240 gtgagacaaa ttgtggtagt gaaccaaaca acccc 275 // ID SZ-4 repbase; DNA; ORY; 6003 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 04-AUG-2002 (Rel. 7.07, Last updated, Version 1) XX DE Rice gypsy-type retrotransposon SZ-4. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW GYPSY superfamily; SZ-4. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-6003 RA Jiang N. and Wessler R.S.; RT "SZ-4: a gypsy-type retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 96-96 (2002). XX DR [1] (Consensus) XX CC SZ-4 is a Gypsy-type retrotransposon. It has 440bp LTRs. XX SQ Sequence 6003 BP; 1851 A; 992 C; 1570 G; 1590 T; 0 other; tgtcaggagt ctagatggag aaatggagtt tcagactgaa tattcagaga agttcagttt 60 cagggtggag aaggagttca ggagagaaga aaacgtttca acagaagagt taagtaaatc 120 caacggcaga gatgcagtca gagggagatc agatgggtgg caatagttgg gaccactgta 180 gctgtcttct tttgcctttt tagctagaat cgcgcgtcag atgctgttta ctttgctttg 240 agatgatctt tacagctaga tgtaaacctt gagatgtaag ctacttatgg aggccattgg 300 ccctagaaaa aaaagtaatc aacatcctca attattacct gtagcttagt tgcattagtt 360 tagaacccta gaaagatcca aattgctgca tactctgttc gtccatttcg ctagcagggt 420 cttgacagag gtatcagagc atctacgatt cttggctctt gattctgtcc ggtgagggtt 480 ggtggacgac ggcggtgaat tccatcgtaa aatccctgag ctagggcaga atcaatccgg 540 aggcgcggtg gtgttcttgg ttgctagagc aagggttggg gtgccactct ttgggtgtgc 600 tcctgtaaaa tctccggagc tcgcagctaa ggataggcgg cgtttctgtt gggatctaaa 660 ggggaggaac tagtttccga gccgatcctg cagaagaaga tgaccaagac tcgctcaagc 720 gaatcgttgg tggatttgga ggagatgaat gagttcagga caaatctggc gttgttaaag 780 aaagatgtgg ctgatctgaa atctctcaag ggggaggtca aggaaatcaa ggggttgctg 840 ttggagcttt gcaagcagaa atcagtcgta gaaggtggag aagaggtagt cactgaaaca 900 gcagccacga aggggacgtt gggttcgagt actgaagcag ctggaacaag tactggagga 960 attccgagga cagcagctcc agaggtacga tttgctattg aaactaatac ggttgtgcct 1020 actgctccca tgaccacaag gagtctgtcg tgtccgatgg gaaatagtgg tgttcagggg 1080 tttggaacta ctcatccaga acccacagtg tttactcagg gtgagaatca tacaggaagg 1140 atggggaatt cagacaatgg tggtcagggg tttgggcata ctaggccaga atcgactctg 1200 tttactcaaa gggagaattt ctttggagaa aagaacaatt ttgggtttgg acctactctg 1260 aatcgagggg tgaatagggg tgtcaatcag tggaatactg gggtacatgt cattgacccg 1320 cagatgcatc tgtttggtac tgcagcaaga gaggggaatc aatatgctga ggctgtgatt 1380 aaggggccca gattggagat atctcttttt actggtgaag accctgtaga ttggctgaag 1440 cagtgtgaaa agttctttga gatcactggg accccagtgg atcaatgggt aaacttggca 1500 gtggcacatt tgtatgggag agcagctaag tggttcagag gtgtagggct gccttggcaa 1560 gtaattactt ggccacaatg gtgtgccatg gtgtgcacca gattctctac tgccaatacc 1620 catgaagctg ttgagttatt ccagaatgta aagcagtatg gaatgacagt ggagcaatac 1680 atcgataagt ttgaggaata tatggatttg gttaggaggg accatccata tcttcaggag 1740 ccatatttta ctagttgttt cattagtggg ctgaggggtg atatcaaaca tgatgtgtgt 1800 ggtcagaaac cccagggact gttggagtca tattggtatg ctaagaacta tgaaaaggca 1860 gcaaactcta ggaaagcagc agcaaatttc aacagaaaca gactgcagac tgggggtaac 1920 acaggaaaga atgtgtataa caaggggcaa ccgaggcagg aaggggataa gaaggaagag 1980 aagaaatgct ggttctgtaa agagccttgg ttccctagac accaatgcaa ggttaaacag 2040 gctatacatg ccttattggt tgaaaatgag gagtcagttg aggtggagga agattctgta 2100 gaggaggagg aaataaaagg agagaagcaa ggagaaaaat tgccagaaca aactgaaaat 2160 gttcaggagg aactgatgag tatatctcaa agtgcagttt atggtctcac aagacctgat 2220 accttttcag ttatgatcaa agtaaatggg aagaaagcag tgggattggt tgacagtggg 2280 agtactacta ctttcatgga tagcaagttt gcaatcaaaa gtcagtgtac tttggagaat 2340 actaaaatga ggaaggtgat agtggcagga ggaggagaat taaaatctga gctgatagta 2400 ccaggaatgg agtatgagat acaaggggaa agcttcacca attcattcaa cttgttgtct 2460 ttggaaagat atgacattat cttaggggct gattggattt tcaaatacag tccaatcact 2520 ttggatctca ggaaaaggga gatgaagata accaaaggtg gtagggaatt ggaaattcag 2580 gatttcacta aacctggtaa atactttcag gttagtaaca agaaaatggg aaagatgatt 2640 aagaagggag ctttggggtg tgtgattcaa atcaatgcta ttactgatca aagtaatgtg 2700 gaggtcggga ttccaaaaga tatacagata gttttgcaat cttttcctaa agttttgaag 2760 gagcctaaag gattgccacc caggaggagt tgtgaccatg tgattaatct gaaagtgggg 2820 tctgagccac caaatctcag accatatcgg gtaccacact ttcaaaaggg ggccatggaa 2880 gatattataa ctgagctgtt cagaacacaa gagatcagaa tcagtgatag tccttatgtc 2940 tctcctgctg tcatggttag aaagaaggat gggtcctgga gattgtgtgt ggattacagg 3000 caattgaatg ctcagacaat aaagaacaaa ttcccaatgc ctataataga agacttgttg 3060 gatgaattac atggagctaa ggttttttct aagttggatt tgcgatctgg gtatcaccaa 3120 ataagaatgg cagagggtga tattccaaaa acagctttta gaacacacct gggacattat 3180 gaatataatg tgatgccatt tggtctgact aatgctccag caactttcca agcactaatg 3240 aatcaggtat tggcaccatt ccttaggaag tttgtattgg ttttctttgc tgatatatta 3300 atatatagca aaactcaatc tgaacatctg gagcatatta aactggtgat gcaagcgctt 3360 tctgcaaacc aattggtggt gaggttaaaa aagtgtgagt ttggactgga cagagttagc 3420 tatttgggac acatcatctc atcagaagga gtgtcaactg atcctaagaa gataagtgat 3480 attaaaaaca gaaaaccacc caagaatgta actgaagtaa gagagttctt gggtatggct 3540 gggtattata gaaggtttat taagggatat ggagttatct gcagacccct gcatgatttg 3600 ctgaagaaag atggcttcaa atggggtgat actcagcagg aagcatttga attgctgaaa 3660 gagaaaatgt gcaatagccc agttttggct ttacctgatt tcagtcaacc ttttgtgatt 3720 gagactgatg cttgtgggat aggaattggt gctgttttga tgcagaaggg tagaccactg 3780 gcctatttta gtaaggcatt aggtcccaaa gcagctgctc agtctgtata tgagaaagaa 3840 gccatagcaa ttctggaagc tttaaagaaa tggaggcact acatcttagg gggaagtttg 3900 atcattaaga cagaccagca gagtctgaag ttcatgatga gtcaaagatt ggttgagggc 3960 attcaacaca aattgttact gaagttaatg gagtttgatt atgtgataga atacaagtct 4020 ggaaaggaaa atctggtggc tgatgcgctg tccaggagcc caaacttgaa agaagagcag 4080 tgtttaccca taacagttgt tgtaccagag tgggttcaag acatcaagag gagttatgaa 4140 gaggatatat ttgcacacaa aattttgagt ttaattgaaa ctgatggtga ccctgagaga 4200 cattataaat tggagtctgg gctgttaaag tataaaggaa ggatatatgt gggggaaacc 4260 actgaaatca gaatgttatt actggaagct tatcatgcat catattttgg gggacattct 4320 ggaattaggg caacatacca tagaattaaa caattgttct attggcctgg actgaagaaa 4380 caagtcgagc attatatcag agaatgtccc acttgtcaaa ttaccaaggc agaacacata 4440 cacattcctg gtttactcaa tccattggag gtacctgata tggcttggac ccatatcact 4500 atggatttca tagaaggttt gccaaaatct caagggaagg atgtgattct agtagtggtg 4560 gacaggctga caaaatatgc acacttcttg gctttatctc atccatatac tgtggagcaa 4620 gtagttcaaa tatttatgga caatatacac aaacttcatg ggatgcctat ggtcatagtc 4680 actgacaggg accgagtttt taccagtaat ttcttccaag agatatttaa aactcagaaa 4740 gtcaaacttc gatttagcac tgcacatcac ccacagactg atgggcagac agagagagta 4800 aaccagtgcc ttgaatcata tctaagaagt atgacttttc aggaacccca gaaatggttt 4860 tcttggctag ctttggccga atggtggtac aatacaactt atcacacctc cattcaaatg 4920 acaccgtttc aagctttgta tggatatcct ccaccacaga ttactgagtt tgccattcct 4980 tgcaacatgt ctgaagaagc cagggtgaca ctggaagata aggctctaat cttgcagaag 5040 ttgaagagca gtatagggga agcacaaagg aggataaagt tttatgctga taaaggcaga 5100 tctgaaagaa cgttggagct aggagatatg gtatacttga agttacagcc atataggcaa 5160 gttgccatgg gaattagagg gtcactgaaa ctcagatcaa agtattatgg tccatttaag 5220 gtgatagaga aaatgggtgc agtggcttat aagttacagc taccagatgg ggcaggcatt 5280 catcctgtgt ttcatgtgag ccaacttaag aagcacttgg gagccagagc tattccaatg 5340 ccaaatctgc cagcaatcgg acctgatggg cagattaaga ctgaacctgc tgctgtgtta 5400 caaagaagga tgattcctag acacaatgag ccagtgacac aatggttgat cctttgggaa 5460 aacttaaccc cagctgaagc aacctgggaa gatgcttctt atattcaggc tgcatttcca 5520 aattttcaac cttgaggaca aggttgttat tggaagagag tattgtcagg agtctagatg 5580 gagaaatgga gtttcagact gaatattcag agaagttcag tttcagggtg gagaaggagt 5640 tcaggagaga agaaaacgtt tcaacagaag agttaagtaa atccaacggc agagatgcag 5700 tcagagggag atcagatggg tggcaatagt tgggaccact gtagctgtct tcttttgcct 5760 ttttagctag aatcgcgcgt cagatgctgt tctgatgctg tttactttgc tttgagatga 5820 tctttacagc tggatgtaaa ccttgagatg taagctactt atggaggcca ttggccctag 5880 aaaaaaaaag taatcaacat tctcaattat tacctgtagc ttagttgcat tagtttagaa 5940 ccctagaaag atccaaattg ctgcatactc tgttcgtcca tttcgctagc agggtcttga 6000 caa 6003 // ID SZ-34LTR repbase; DNA; ORY; 4039 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE Rice long terminal repeat SZ-34LTR. XX KW Long terminal repeat; retrotransposon; SZ-34LTR. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-4039 RA Jiang N. and Wessler R.S.; RT "SZ-34LTR: LTR from Oryza sativa."; RL Repbase Reports 2(7), 91-91 (2002). XX DR [1] (Consensus) XX CC Identical sequence SZ-43LTR is published in CC Repbase Reports 2:(7) p. 100 (2002). XX SQ Sequence 4039 BP; 1097 A; 1029 C; 644 G; 1269 T; 0 other; tgtaacattc tgaaaatgtg tcattttcta atcttgcatc atgctgattc ttatgttctt 60 aataaccttc taaacctagg aaaatataat tagagggacc tcctaaaact aactcgcata 120 aaacctctct ggtatttaat cccttttgtg tttttcattt aaaaacatat ttggtatttc 180 ttgttgaaat tctattttca aatattaaac cttctttcga ctaaaactct tttattcaaa 240 tttagtttaa aaaccatttt tattattatg aattatggtc caagaaatcc tccaattttt 300 gtccttgaac ctagaccaaa gtaattccaa tctcattgga attaattgtt agcccatcct 360 ttgatcttaa acccatcctt tgattctcga tccaaatatc caaattcctc cttttgatct 420 agccaccaat ttaatttatg tggcttgatt tcctcttcgg cacaagaatt gtattattgc 480 aatattgtga ataattgctc ttgtgctaag aaaattccaa tttatattct tcactcaact 540 tcccctttta gccacaaata tacataacac caattttaga gttcaaatcc tatttattgc 600 cttcaactaa ttcccttcta tattcccaaa aatattttga ggaatattat taatttccat 660 tcctatttga gtgcttccaa ataaattccc tcaaactcca cctctaaata ttgcactcaa 720 ataaattagg aaatctcttt tgtgaattct ttccaaattc aaattctttg caaaacctag 780 ttatccaaat caagtattca aattaggctt ctttcttttt gtcatcgggc cgaaactcca 840 ttctttcttc ctttttggcc caatcccttt tcttttatct tctattttcc tcctccttct 900 tgagctgccg gcccagctaa gccgagccgg cccaaaccag cccacacccc aaccgagccg 960 ccccctcctc ctgtgcacgg ctcacgccgc cgccaactcc tcttccttcg ccgctaagga 1020 aacgaagccg gccgccgtag ttcgaatctt cacgccatcg tcgcccgtgc acttctcgat 1080 ctcctccaca accgcctttc accaccgcct ctctccccta taaatagccg gccatccctc 1140 cccttctcta catacaatca gagctccatc tctctctctt tctctcccat gtccggccat 1200 ggccgccacc acccgatctc cctcaccgga gcttcgcaag ccaaaccatc gcgccatcga 1260 gttcgcctcg acgaggtgat tccatttttc ctgtttcccc cttctccccc accccatagc 1320 aaccaccacc gccacctctc tttgccgccg aagataagct cttctactcg ccgttccggc 1380 catctccctc actctctccg ccagccaccg cccaccccag gtgcgtcgtt ctcgggaaca 1440 tgtgtggccg ccgacgtcgc cgcctttcgt ccaccggaga gccggcgccc actctctccc 1500 tctcctgtgt agccggcaag aaaaagaaga agagaggaag aagatgacgg gagaaagaag 1560 aaggagaaga aaaagaaaaa gaaagactga caggtgggcc cctgcacagt gacttttctc 1620 attttctaga tttaattcaa atcctattct ttagaagcac atatctccta aaccgtagat 1680 ccgattctag tgaaacttgg acctaaattc atctaaattc aactcttcat tttgatatca 1740 aatttgctat tttaagattt tatttgaatt tccttaattt attcaaatgc catttgaata 1800 aatatttgat ttaatcttat aattgaattt acaatttaaa cttatatttg cttttcaaat 1860 attttctttt atttccaaaa tgcccgttag ccactaaaaa gccgccggtt ggaactttac 1920 gccttccatg gggacgtttg cgcggtctac ggacctcaac gtcggaccgt tggttgtaaa 1980 gcccggcaaa aaccaaacct aaggtcgaag tgctgctcct gccaccccac gccttgatgc 2040 gtacagcggt cggagcttca ctatcccctc gacctccatt gcacgccgca cagttagctc 2100 ttgagctctg tgtgatccta gccgctctgc cgccactcac ggttgtcgga gtaacacttc 2160 cgccccacta aacctgcacc cacctcctat tcttctagcc gatatgttgt ctatcgacac 2220 ggctagaaat gataccaaac ctagtcgtca tgctgtccaa ctctagcgac aactagcaaa 2280 cacccaaaac cctagccgat atttatccta cctcgatatc ggcctaaaca actaaacctt 2340 agccactatt ctatcaaagc caaccttaac ccatattagc cacatgccta tttaaccata 2400 tcaactatcc agtatatttc ctatcgtcca aaccacgaga gcctccacat aaaatataga 2460 gcctagccga gatactgtcc tactccacag tcgactccca tataactaaa ccctagctat 2520 tatactacca aaacctacca ctagcaaata ctagccccat aatccctata ccctataaaa 2580 gagataggtt ataccttaaa ccctagccct cttagtcgtt tatcgttttc ttattatttt 2640 atggctttta ttgaatttgg ttcttcctct ttctcagtaa agactattgt cttttggatg 2700 gcaacctatg gtatttcgag aatcgtataa tcaggttgcc tatcttggat ttatttgcgt 2760 tggagcaagg caagttatta ttcctcccct tgagcataat tatcctatat tctatatctc 2820 tattctatgc attagccatt catgattttg aatgcataat ctgaacatat agcaaaccag 2880 ttatatgcta gcttttgctt agccctgcct agttagattg cataaaacat aatgaactta 2940 gattgggaca gtacgcaaga tttggttgat ttccgggtgg ctagtactgt ctcggtcgat 3000 ataagtttac caagtactta tgtcaaacga acgagtacga tcgcagcttc tagaatgggg 3060 acagacctag atattatgtt aattaacaat gtggtacctc tgtacagtgg ttcttatata 3120 agtcctcgcg aaggaggcaa atatatgccg cgaagggcaa atgtgatatt taccgaggcg 3180 caggtaaata tcttgattat cgcgcgatgt gtgtgtgaat ttatgaaaac ctggttgaga 3240 tgacatgggg tctctcatcc agttctctct aaaaaccccg ggaacgccag aactcctctc 3300 gctgctgata acattacatt cagagcgcat gtggactaga gttcatggaa caggtgccac 3360 aattgttaat aacctaatac taggccatga ctaagctaat gattattggc aagtcgtaga 3420 ctgcgggtaa agcgtacatc tactgcaata tgaatatcct tgaatctatt cgaatagccg 3480 tgctcacgga ttgagcatcg ggactcatat ggtactttgg ttagaaatat aattcaagat 3540 tttcttaaat actgttgcat atcaagcatt tcaggatttc tacctcttta ttctcagctt 3600 tctgcaagta aacctagctc tacacagata ttaccatttc atatattcat tattggttaa 3660 tataatagct tgctgagtac gttgtactca cccttgcttc aacccctctt tttcagagtt 3720 taattggagt ttttgccgaa gctgggagtt caatcacata agttagttcc ctttaaacct 3780 aatcttcaag tctagtgtag ttagatggtt taattctata gtaaaacggc agagttgagt 3840 catcgtatag cctctgctgt aatagttagc cacaaacttg taaatgtcct attattttat 3900 ataaagatat ctcctttgga gtctttacca aatgtatgcg atgaagatct aaattgttga 3960 acctgtatca atctactgat ccagggcttg atacagttaa acatgtcggt ttccgaatcg 4020 ttagttttga gagccgaca 4039 // ID SZ-45LTR repbase; DNA; ORY; 2474 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 04-AUG-2002 (Rel. 7.07, Last updated, Version 1) XX DE Rice long terminal repeat SZ-45LTR. XX KW LTR Retrotransposon; Transposable Element; Long terminal repeat; KW SZ-19LTR; SZ-45LTR; retrotransposon. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-2474 RA Jiang N. and Wessler R.S.; RT "SZ-45LTR: LTR from Oryza sativa."; RL Repbase Reports 2(7), 101-101 (2002). XX DR [1] (Consensus) XX CC Similar to SZ-19LTR. XX SQ Sequence 2474 BP; 680 A; 593 C; 610 G; 591 T; 0 other; tgttactgtg aaagcacggt ggcctgggag atctgcttaa ctccagtact ggtccaaggc 60 ttgcctcaaa gtgctaaggg ggtgccagct ggtttgatcc cgcaaccagt aaagaaacaa 120 aagacaggat tagttagccg atagccaatc ggctgatagg ccgatagcgc atcattgatg 180 gtcccagccg atgggataag accgaatacg acggcctggg agatctgctt aactgcagtg 240 caggtacagg gcttgcctcg aagtgctaag ggcgtgccag ctggtttgac cctgcaacca 300 gcaaggaaac aaaagatagg attagtcaac cgatagccaa taggccgata ggctgatagc 360 gtattgttga tggtcccagc taatggggta agaccgaacc ggctatagtc ttgataaatc 420 aaagaatata aaaccctaaa tatgccctat cggctgtaat actgtccata aaggttaata 480 aaagatttta agacaatatt gagaaaatag ccaatataac aatatttccg gtataacaat 540 atttagagca ataaggataa cgtactagct aatactccag tacaaatcta tataagcata 600 tcaatctata gcaatatatt aagtaaagtt cagtagtcaa tattgatagc acagccaatt 660 tgacctagac ttgatatgat gctattaggt gatctgtcta tatagatggt gaatatacat 720 gaaacagata aagaaacatg catattagat aggatcggct gaaataccga tactacccct 780 attatcagtc aaaaacaggc tagagctcat gattctatgc acgacttagc agatctaatg 840 tactgatgca gcactaagta tgtgtcgtgg gggcgattcc atggtcagtg gggagtggag 900 accccttccc gtgagaatgg agattcggcc aaggggtttg tcggcgcccg gacggtggtc 960 gtgccaaggc ggcatggagt gtgtcgcgag gggtggcaga ggacaagggc gcgagtgtgc 1020 gcagggctcg agctagcccc gtggcgggag gcgaggagat ttatataggt tcaggccacc 1080 cggaggtata ataacctact cctgtgtttt ggctttcact aactacccta ggccgacgac 1140 cgtagggaag gccggccgac ggagtataag gtgaattggc tagcctaagg gaagaattag 1200 aagcaatgta tggcaatgtc cccggccttc caaaaagacc gaccccttaa atagttgcta 1260 gtccccccct tatagtgtaa ggtggggctc acaatattac ctaactaccc ttgaaacctt 1320 cacgtcaatt gtcttatctc tgccgtctga ctttttggct gtgatcctca agaaaccctt 1380 caagtcttgc agttcacaca gccccgagct ccaaagtcct gtcagaggta gttgggcttc 1440 caccagctcg cacaccacgt ggtgcgaggt gggcctagta gggcctaggc taccttcggc 1500 gggacacggc tcttccctac cggctaggcc gagggaaggc gtccgtgggc atgtgtgaca 1560 cgtgtcgggg gtgccatcga ccctaacgat ttgccaccca agtcttgtcg aagtctctcc 1620 gttgtcagcg ggagaaatct tctataagct tggtttcatg atgagagggg gtgcattgcc 1680 ttacaactgg cccttagact tcacacctcc cgtcaggact taaggtcaca cccctgacat 1740 cctttaaagc ggtagttagg atatttctag tgtaccttac agaggaaggt acaaccggac 1800 agatatctcc gtgttacttc cctagtaaac ttccatgctc ttccttcagg gagaaggagg 1860 agcgattcct actgggatcg aaggcagccc gggccccggg cgtgccgaca ccgcggctgc 1920 cttcaccacg taacttggcg agaagacgtt cttgttatgg aggcagaaga cggaaaccga 1980 gacacacaca cacacacaca gagccgctgg cttgcctgga cagactcagc gatggtcata 2040 atacaagaac taatacatct aaaacgacat aatagccccg atagcacgag ccatcgagac 2100 gggttacctc tgtggagata actcgccgaa aacaagtaaa agaaaagggt ggcgatgcgc 2160 caaagttgta ttggatttgc tttaatacaa ttgcctttat tgagcttcgg cgcgccgaag 2220 ttatattaga tacaattgcc tttattgagc ttcatcttta gtccaatcta gacccatacc 2280 gagcccaagc tatgccatat cagctgtatc ggccatcagt cccctcagct tgatcaatct 2340 tcagcccttg tttcctaccg atacggtctc cagccgatac acagtccgat tctgagttca 2400 actaaatcca acaccaaatc cgcttcgatc tattccttct tactcgaatc tgatgccaaa 2460 ttccattatt aaca 2474 // ID SZ-17 repbase; DNA; ORY; 3386 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE Rice copia-type retrotransposon SZ-17. XX KW LTR retrotransposon; COPIA superfamily; SZ-17. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-3386 RA Jiang N. and Wessler R.S.; RT "SZ-17: a copia-type retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 77-77 (2002). XX DR [1] (Consensus) XX CC SZ-17 is a copia-type retrotransposon. It has 135bp LTRs. XX SQ Sequence 3386 BP; 917 A; 784 C; 1045 G; 640 T; 0 other; tgaaagtgtg ggaatgattg attgtattcc acaagtgtca agggattaca tataggggca 60 gctggggtgg cactcaggcc caccgcacgg gcccaattac atccacaatc aaggcctaat 120 tacattagtc taacactccc cctcagtcta atcgggagcg tcgctaatgg ttagactggt 180 cctaaactcc tgaaacagcg aggtgggaag acccttggtg aagacgtcgg cgtactgtga 240 agtcgtagga acgtgaagta cccgaacatg tcccaaggca accttctccc gaacaaagtg 300 aagatcgatc tcaacatgct tcgtccgttg gtgctgtacc gggttgctgg aaagatacat 360 tgcactgaca ttgtcgcaat agacaactgt agctgtgcga ggtggtcggt gaagctccat 420 cagcagctgt cgcagccaag tcgcctctgc aacgccattc gccacggcgc ggtactcagc 480 ttcagcactg gagcgtgata ccgtgtgctg ccgcttagag gaccaggata cgaggttatc 540 gccaagaaac actgcgtacc cagaagtaga gcgacgtgtg tccggacagc ccgcccaatc 600 tgcatcggtg tatacaacaa gatctgtcgg tggtgagcgg cgcatggtca aaccgagaga 660 cagggtgcct tgtatgtagc gcagaatcct cttgagagca gccaaatggg gttccctggg 720 atcatgcata taaagacaca cttgttgaac agcaaatgca atatcggggc gagtgaatgt 780 caaatactgg agagcgccag caagactgcg atactgtgtg gaatcagcaa ctggaggtcc 840 atctgcagac aatttggagt gcacatcaac aggagtgctg caaggtttac actcacccat 900 cccggctcgc tccaaaatgt cctgagagta ctgacgttga gacaaaaata atccactggc 960 aaaacgcgtg acggtgatgc ccaaaaagtg atgaagggga cccatatctg tcatagcgaa 1020 ctcacgctga agagcagcga tcacctgctg cagaagactg gcagatgaag cagtgagaac 1080 gatatcgtca acatagagca gcaacaagac cgtgtcgttc ccgcgccgat ggataaacag 1140 ggaagaatct gattgtgctt caataaatcc aagggagatg aggtgagaag caaaccgatg 1200 atgccaggca cgtggagctt gcttcaggcc atatagcgac ttgttgaggc gacagacaag 1260 atcagcatga gatgggtccg caaagccagt tggctgaatg caataaactg tctccgagag 1320 agtaccgtga agaaaagcat tcttgacgtc aagctgatgg atgggccagt cctgagagag 1380 tgccagtgag agaacaactc gaacagttgc tggtttgacc actgggctga aggtctcatc 1440 ataatcaaca ccaggtcgct gagtaaaacc ccggagaacc caacgagcct tgtacctgtc 1500 aagagaccca tcagagtgaa gcttgtgacg aaaaatccac ttcccggtga ccaggttaac 1560 accgcggggg cgaggaacga ggctccaggt gtcattggcg agcagtgcat caaactcagc 1620 ttgcatagca gcacgccaat tgggatctga caaggcttca cggacagagc gaggcacggg 1680 ggacaggggc gccgcgtgga gattgagacg atccacgggc tgcgccatgc cagccttgcc 1740 acgtgtgcgc atagagtgcg cgttgtcgac gggggcgatg gagaccggcc gggtggccag 1800 tgtacgcccg gtggccgcgg tactactggc agctacctcc gctcggggcg gaggggcagc 1860 agtaccggcc agaggagaga gcgacggggt cgtgccgctg gtcgcagcac gaggcgcgct 1920 ggtcacagcg cgagtagtgc tggtcgcagc gctgggcgcg gccgtgcgag caggactgat 1980 cgcgccaggc tggctggtcg cagctccagc cggagacccg ccgtgtggcc cggcctctgg 2040 tccagcaagg gtagccgggg accgaggccc gatgctcgac ggcgcgggag ggggcgtgga 2100 gggctcaaca gccccacgcg cggcggagga ggtacctgca tgcacaaact ttgctcgagg 2160 gggttgagcg gtgagttcat tatcatcaag aaaaatatcc aaggcggagg atgccatggg 2220 tgatgtagac atgtcggcga agggaaaaaa ggactcatca aaaacgacat gtcgggaggt 2280 gatgatgcgg ttcgacccaa gctcaaggca ccggtagccc ttgtgttccg aagaataccc 2340 gaggaaaaca catagggatg accgaggagc gagtttgtgg ggggcagtgg atgacatatt 2400 aggatagcaa gcacacccaa acacgcgtag atggtcatag gtgggctggg tcgaatatag 2460 gtggaagtag ggggtggaag aggacagtgt cttggtgggg atccggttaa caaggagggt 2520 ggcggtgtga agggcctcga cccagtagac cggaggaaga catgcttgaa ataagagaga 2580 gcgcaagata ttgttgagtg tgcggagaga gcgctcggcc ctgccatttt gctgggacgt 2640 gtagggacac gacatgcgaa acgcaacacc gtgagagagg aagaacgtgc gggcagggga 2700 attgtcaaac tcccggccgt tatcgcactg aacgctctta atggtggtgc cgaattgcgt 2760 tttaacatgg gcaaagaaat tggcaatggt ggaaaaagta tcggatttta ggcgtagtgg 2820 aaacgtccaa atgtagtgtg agcaatcatc taaaatgaca agataatatt tatagcctga 2880 cacactgaca atgggagatg tccacagatc acagtgtatt aaatcaaaat tattggaagc 2940 tcgagaacta gaagaactga aaggaagtct agtgtgatga ccgagctgac aagcatgaca 3000 taaatgaggc aaatcatctt tagtacatga aatgacactg gatctaatga gcttggacaa 3060 agcttcacgc ccaagatgac cgagacgacg atgccaaagc gaggtgggtg cggcgaggag 3120 ggcatgagtg ctggtggctg gtgggtagaa cgggtagagg tcgccagagc tattgcacct 3180 ggcgatcacg ttcctggttt ccaaatcctt cacagaaaga ccaaacggat caaactcaat 3240 agaggctcaa gtgaaagtgt gggaatgatt gattgtattc cacaagtgtc aagggattac 3300 atataggggc agctggggtg gcactcaggc ccaccgcacg ggcccaatta catccacaat 3360 caaggcctaa ttacattagt ctaaca 3386 // ID SC-1 repbase; DNA; ORY; 6887 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 04-AUG-2002 (Rel. 7.07, Last updated, Version 1) XX DE Rice copia-type retrotransposon SC-1. XX KW Copia; LTR Retrotransposon; Transposable Element; KW COPIA superfamily; SC-1. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-6887 RA Jiang N. and Wessler R.S.; RT "SC-1: a copia-type retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 33-33 (2002). XX DR [1] (Consensus) XX CC SC-1 is a Copia-type retrotransposon. It has 403bp LTRs. XX SQ Sequence 6887 BP; 2212 A; 1289 C; 1516 G; 1870 T; 0 other; tgttagtgtg aacgcaaaat atgatcttgc ggctaaacct aaagtcggca aagagatatt 60 ttgtttaggg tgatcgctac agtgatcgat ctctcatgaa catccctgat cgggggataa 120 ccgccatacc ctagtgtcgg ttccccctgt gtgcagtggc tataaataga gatcaatacc 180 taagtgttaa accctaagag atttctctcg ctacccgatc aaacaaccca ctgaaacaca 240 gggaagaatc aagacacgat tctcttcgtg cttccaaact agaagagaag aaagaagaac 300 aaagacagag agaatgggaa ctccaggaga tcaaggtatg atccaatccc attttaattt 360 gtagttccac tttgtgccaa accgattcta tcaaatccaa caatggtatc agagcaccgg 420 gttggcctca aattggaact caataagtgt ttatgttcaa attgttcttc gtgttcatgc 480 ccaaatccct ctgttaaagt tgagttaagc ccaaatcatg caatcccgaa atataagaaa 540 tggaattagg ccttctaggg tttcgggttg aagaaattag aagaagggga aagcaaaagt 600 tcatgcaaat ctcagacaaa tccccaagaa ccgaaaccct agctacagta agatcccaaa 660 tttttcccca aatcatgaaa ccctaaccct aaaatcaagg ggaaaaagga gcacggcggg 720 cttacttaag ggccatggtg gccggcggcg accaccgtgt cgccaccgac gccggaaaga 780 ggcgagcgcg cgcccgagga cttggtcccc gagcggcctc gcgacccgtc gtgctggccc 840 ggctcttcct cttcgcgtgc tcgtctcgcc gacgccgcct cgctgaggta gccgtcgccg 900 ccccgtctcg ccgtcgccgc cgcggatctt cctcgcgcga gcgaccggcg ggtgcttagg 960 gcaccgtcga gcaacgctcg acggggatgc gcaccagcta tggcggcacg cagccccggc 1020 gagcaaggct cggcggcgcc acctccaccc cgtcgtgcgc cgcttcgccg tcgtcatcgt 1080 ctcgctcacc gtcgccgcgg gcgtgagaga aagaggggag gagagaatgg ggctagggtt 1140 ttcagggggg ggggcggccg cgcgccggtt ttgtcccgcg cgggagcgat cccggccgtc 1200 cgatgagatg gacggctcgg atcggctcgt cccgacgcgg gctaaccagg ccgcgcggga 1260 ggcggcgaat gccggcctag gcccaggttg ttgggcctgg agcccaggcg gaaggcggcg 1320 cggcaatgac gggccaggcc gagtgcggcc tggctcgaga acgtggccca gttcaaaaaa 1380 aaaggttatg tgggctgcat actaatgggc ctaattaaaa ggattgggct gagataatat 1440 tacaattaaa attttctttt ttgaagaatt atgattatga ttatgatatt tgtgtttaaa 1500 cattgaagat attttattat gttttagtta atgataataa gaataataag tgattttgtt 1560 atgtgataaa attctctttc atttatttat ttattttatg atcattacat tatatttatt 1620 acttaaagtt attattgttt tatgcattat gagtttattt ccgttacaaa taaatattat 1680 aattaagtgt gacaaataat tgtcattctg gccaaagctg attgactttt atttgatccc 1740 aaaattttat taattcaatt caaatctggc taaagctgtt ttgattgaat taataaaagg 1800 agttttaaac aaattaataa agtgtggttt gtatttatta ttctggccaa agctgattaa 1860 taaatactta ttcacaaaat tttattgttc atttccttct ctggccaaag ctgttttgga 1920 tttgatcaat aaaagaaggt actcatctta tgcctcacaa atttccggaa taatgggcaa 1980 tattgaacaa cttaatggaa gtaattatgc ttcatggaag gagaagctgg aaattactct 2040 agctctattg gatattgatt atgccctcca taatgatcct ccggttgagc ctagaccgga 2100 aaatgagaat tatgagacat taaaaaggat atatgatgaa gtaaaggcaa aatgggatat 2160 ttcaaaccgt aaatgcctta tgattatcaa gagctccatt attgacgcaa taagaggagc 2220 agtcccagat actcagacag ccagagaata tcttgctaaa gttgaggaac aatttaaagg 2280 ctcttctaag gtttatgcca ccactcttat taaaagattg gtcaatgaaa gatacgattt 2340 tactgaaaat ctgagggaac atattatgaa gaaatgtcac atggtttcta agcttaaatc 2400 aatggaaatg gaaatctctg aaggttttct tgaccatatc attatgtcat ctctgcctca 2460 ggagttttct ccatttacga tcgattataa tgcaatgaag atcaagtggg gcattgatga 2520 attaatagcc atgtgtgtac aagaagaaga aaggctgaag gcagaaagag ttgaccatgc 2580 aaatttattt aagcactccg agaagaaaaa gtataagaaa tttatgaagg agcatttgag 2640 gctaagccta ttcaattaaa gaaaaagggc attttcgaat caatcccagc agaatagatc 2700 tggaggaaat ccctatacag aagaaaaggg aaaagaaaag gatgggtgct acttttgtgg 2760 aaagagtgga caccgccaaa aggactgtat tggatttatg agatggctca gtaagaaagg 2820 tactgatgtt atttcttttg ttgatgaatc cctaaatatt gattatgcca ccaattcttg 2880 gtggattgac tcaggagcga caattcatgt tgcaaattcc ttgcagggat tcgctatgag 2940 gaggacccta agaagagggc aaagaagaat tagagttgct aatggagttg aaactgaagt 3000 tgaggccatt ggagacttca ctctcacact tcatactggc ttcaaacttc agctgcatga 3060 tgttctttat gtaccctcta tgaaaaggaa cttagtttca gtttcacgtt tagataacgg 3120 tggttactat tgtacttttg gaaacaatag atgtataatt atgcatgata ataaagatgt 3180 tggtctcgcc gtttgacggg aacaacttta tcaaatctct gtgtgcgatg ccacctataa 3240 tgttgactcc tcctcaaatg caaatgtcaa taccaaacga aaacataacg ataatgagac 3300 ttcttcgaaa ttatggtagt atcgtttggg ccatatttca agggggggaa ttgagcgtct 3360 cattaaagaa aacatccttt atcctttgga cttctcagat gcagatgttg atcactgcat 3420 tgattgcatc aaaggaaaat attccaagca aatcaagaaa ggtgcaaatc gaagtatggg 3480 agttttggaa atcatccaca cagacatctg tggtccattt aatgaaaagt cagtcgatgg 3540 atttgattca ttcattacat tcaccgacga ctactctcgt tatggatata tctatccaat 3600 caaagaaaga tctgaggcat tagacaaatt taaaattttc aaagcagaag ttgagaatca 3660 acatgattga aagatcaaaa ttgtaaggtc tgaccgtggt ggtgaatact atggtagaca 3720 tactacttat ggtcaaattc ctggaccttt tgcgaggttc ttacaggaaa atggcattaa 3780 ggcccagtac tcagcaccag gcgaacccca gcaaaatgga gtagctgaaa ggcgtaatcg 3840 cactcttatg gatatggtac gaagtatgtt aagtcactcc actctgccgg taaagttatg 3900 gatggaagct cttaaaacag ctacacacat tcttaacagg gttcctagta aatcagtccc 3960 taagacacct tttgaattat ggactgggaa gaaaccaacc ctaaattatt ttcatgtgtg 4020 gggttgtcct gctgaagcac gagttttcaa tccaaatatg ggaaaattag acatcaaaat 4080 aatcagttgt cattttatcg gttatcctga taagtcaaag gcatatagat tctactgccc 4140 aaatcagttt acaaagttca ttgagacaag acacgctgtg ttcttggaaa atgacataat 4200 caaggggagt atgacaccca gagaagttgt tctggaagag aaacgaaatt atttccaatg 4260 cctataattg aagaacccgt tttctcaaca catactcatg ttgcaccttc aatagaaaga 4320 aataatgatg caacacctgc tgaaactcct gcaactactt ctagtagtgt atcaaatgat 4380 gagaataatg aggatgctca gcagccccag attgtgatag atgagcaaaa taacgaaccc 4440 gtcagaagat cacaacgagt tagaaagtca gcgattccaa gtgactatgt cacttacata 4500 aatgaagagg tgaataaacc tatgggtgaa gaggtgaatg agcctatact agataatgat 4560 cccatctcat ttaaagaagc aatgaagagt aaacattcgt ctgaatggct aaaagctatg 4620 aaagatgaaa tgaaatccat gagtactaat aaagtctggg acttagtaga aattcccgaa 4680 ggagccaaaa cagttggctg caaatgggtc tataagacta aacgtgaccc caagggaaat 4740 atcgaaaggt tcaaagcaag gcttgtagca aaaggattta cgcaaagaga agggattgat 4800 tataatgaaa cattttctcc agtatctact aaggattcat tcagaattat tatggcacta 4860 gttgctcatt atgatttgga actacaccaa atggatgtta agacggcatt cctgaacggt 4920 gatttgtatg aagatgtata catggcacaa ccagaaggtt ttgttatgaa aggaaaagaa 4980 catatgggat gtcatctaaa gaaatcgatt tatggactaa agcaagcatc aaggcagtgg 5040 tatctaaagt ttgaccaaat cataagacaa tttggtttta aagaaaataa aaaggatgac 5100 tgtatataca ctaagtttaa ggagagtaag ttcatcttcc taatattata tgtcgatgac 5160 atactcttag ccagtaatga taaaaatatg ctactggaaa caaagaaatt tctggcctct 5220 aagtttgaaa tgaaagatct cggtgaagcc aattatgtgt tgggtataga gatttaccga 5280 ggcagatcaa atggtgtttt ggggctatct cagaaagcat atatagaaaa ggtactgaaa 5340 aagtataata tgcataattg ttcagcctcg cctgctccta taatgaaggg tgataagtat 5400 ggaaaattcc aatgtcctaa gaatgagtat gaagctgcgc agatgaagtc aatatcatat 5460 gcttcagctg tcggaagcat aatgtatgca caagtgtgca ctcgccctga tttagctttt 5520 gttaccggga tgcttggcag atatcaatct aatccaggtc tagaacactg gaaattagct 5580 aagaagacct tgcgttatct tcaaggcact aaagacctca tgctcacata tagaaagtct 5640 gaaaaccttg aagttgttgg ttattcggac tccgatcttg cagggtgtgt tgatgataag 5700 aaatccacgt caggttatat attcaccctt gcaaggggag ctatatcgtg gaaaagctcc 5760 aaacaaagag ttactacatc gtcgacaatg caggctgagt atgtggcatg ttatgaagct 5820 actggacagg caatatggct gaaaaacttt atcccgggat taagagtggt cgacagcata 5880 tcaaaaccac tcaaattata ctgcgataac aaaccagcag tatactatgc gagtagcaac 5940 aaatcaagtg cttctgccaa atacattgat atcaagtacc atgttgtgaa agaaatgatc 6000 caggatcaga caataagcat tgagtatatg aacactaagt tgatgttagc ggatccactt 6060 acaaaaggcc taccacctgt tgtatttaaa gaacatgttg ccggcatagg tttggtagaa 6120 aagccttcga tcctggaata agaaggaacc tatatgacac tgactcccca taaaactaag 6180 gcggactcat tttgaaatta aataggaacc atagtcactt ggttcagtag tacttaattg 6240 gctactgtaa tctagtgtct tgatgtactg ttttgttgaa aagtgagtcc ataagtttgt 6300 ataagcctaa tgtaataagt tcaaagagct cgtaagatta aagaagttta ttttaaaata 6360 taatggtatg ctatagtcac tggattcttt gatgctttat attggtcact ataatctttt 6420 gtcttggtat actattttat tgaaagatgg acttataagt ttagcctcac gatcaagggg 6480 gagaatgtta gtgtgaacgc aaaatatgat cttgcggcta aacctaaagt cggcaaagag 6540 atattttgtt tagggcgatc gctatagtga tcgatctctc atgaacatcc ctgatcgggg 6600 gataaccgcc ataccctagt gtcggttccc cctgtgtgca gtggctataa atagagatca 6660 atacctaagt gttaaaccct aagagatttc tctcgctacc cgatcaaaca acccactgaa 6720 acacagggaa gaatcaagac acgattctct tcgtgcttcc aaactagaag agaagaaaga 6780 agaacaaaga cagagagaat gggaactcca ggagatcaag gtatgatcca atcccatttt 6840 aatttatagt tccactttgt gccaaatcga ttctatcaaa tccaaca 6887 // ID SZ-53 repbase; DNA; ORY; 5576 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 11-OCT-2005 (Rel. 7.07, Last updated, Version 1) XX DE Rice retrotransposon SZ-53. XX KW Gypsy; LTR Retrotransposon; Transposable Element; SZ-3; SZ-53. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-5576 RA Jiang N. and Wessler R.S.; RT "SZ-53: a retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 107-107 (2002). XX DR [1] (Consensus) XX CC SZ-53 has 371bp LTRs. CC Related to SZ-3 but in different orientation. XX SQ Sequence 5576 BP; 1337 A; 1247 C; 1342 G; 1650 T; 0 other; tgtcacggca tcgtcatcgt catctcctgt tcctcatcag acaagcgatg tagcttctcc 60 gtcggaccaa gatgggctca gaaagtcgca tcgtgaacga cggcccaatc cggcctatca 120 cgggagtgag tggacccagt agtgactggc tgggccacat gtaagggaga gagatccaat 180 ggctcattgc tatataagga tcggcagaga agagatgtga tttgaacaat gtaaaaacag 240 aattccccat ctaaatcaat ccttctctgt tctatctctg cttctctgag ttcttccttc 300 ttccttccaa tttcttccaa aatcctcacg aatcctccat tgttgcggta caaagctagg 360 gtgtcgtgac aaattgatat cagagcagtt aatcctggag aagccacgct atacctctcg 420 tttgcagctt caggtggagg ctatggagaa gcaaaatatt gatttcggca aggtgctggg 480 tgagatccag gagtccttgg tgttgctgaa tcgagctcaa gtggatacgc aggcctccat 540 cgtcaagctg gatcaaggcg tgagtgcttg gagaccacaa gtggaggcgg ctgtgcagga 600 tctgcgtgac gaagttggtg accttcgtca gcaggtggat cttctgaaca aggcgaaaca 660 agctccaccg gcggcgtctt ccccttgggt cctgttgacg ggcaaggaaa ggaaggcccc 720 gttgctgcct acgccgacgg ctacctcacc agcagctgtg gcggagggtg cagagaaatg 780 ggccaacggc caccgtcttc atcaaaattt ctggggaaag gcatcgggtg tagttactac 840 cctgatccat tctccgggca agggtacgtc tgattccaac cgaattccct ttcgatcctt 900 ggagaatttc gatttggatg ggggggcgag tgattttgac cagggaaatc ggcagtacaa 960 tcatagagtt cctaaacttg atttccctaa gtttgatgga tcagacccgc aggattggct 1020 tatgagatgt gagcattact ttgatgtgaa caacacttat ccagggttat gggtgcgggt 1080 ttcaactatc tatttcattg gtagagcagc ttcctggctt aggtcttcta gggctcatgt 1140 tcgtttccct atttgggagg atttctgtgt ggcagtagct aacaaatttg atagggatca 1200 acatgatgaa ttgattagac aaatggatac aattaggcag acagggactg tgtgggagtt 1260 ttatgagaaa tttgatgagt tgatgaatca cctgttagct tatgacccag cagtgagtat 1320 gagatatctt atccataggt ttactgaggg tttaagacgg gatattcgta atgctgtcct 1380 cctgcaacga cctcgagacc tcgaaactgc tcttgctatt gctactttat aggaagaagt 1440 ggcggaatcg tcgggtggac attcaactcg tgaattgaag aaatttgatg gccaagtgaa 1500 taatagatct tctctgaaag gggcttggcc attacctcaa cctcctggac gagtagttgg 1560 gggtaatcgc actgaagatc gtctgggtac tgaaccacat cgctcgacct cttcttcgtc 1620 agacaaaatt tcagctctca aggcacaacg gcgtgcacaa ggactttgtt atatctgtgc 1680 tgaaaaatgg tctcctacac ataaatgctc tacttcagtg caactgcatg cagttcaagt 1740 gcttttcagt attttacatg aaactgacag tactcttgat gatgagccag cagtttctcc 1800 cactggtaca ttgatggcaa tatctcttca agcagtattg ggttcagaaa ctgatggcac 1860 catgtgaatg gtaggtcaga ttcaagggct ggagattctc atcttggtag attcgggcag 1920 ttctgtgagt tttctgaatt ctaccattgc tgacaatcta aagaatgttc agagaaaacc 1980 tcaacaaatt tcggttcaag tggctaatgg aaatatcttg cattgtactt ctgccattac 2040 taattgtcaa tggagcactc aggggtatgt gtttaataca actctcaggg ttctttctct 2100 taacagttat gacttgattt tgggcatgga ctggttgaca gagcatagtc ccatgacagt 2160 gaactgggcc accaaacagc ttactgtctc actgaaagga caatttattc tgttacaagg 2220 aattaattcc caggtttctc agtgtaactt actgcttggc catcaaatga aacagctgca 2280 agctagacag gcagtggctc atcttgttca gttatgtgtc tctcatagta atatagagca 2340 ggagtttatt ccagacagtg tgcagcaagt gcttcaggaa ttctctggta tctttgatga 2400 accatctggt ttacctcctt cccgatcatt tgatcacact attcctctgc tgcctggggc 2460 tcaacctgtt agtgtgcgac cctatcgtta cacccctgcc caaaaggatg agatagaatc 2520 agaggttact gagatgttgg ataagggaat aattcagcct agcgcaagcc cattctcttc 2580 tccagtgctg ttagttaaga aaaaagatgg cacgtggcgg ttttgtgtgg actaccgtca 2640 tttgaatgca attactgtca agaataagta tcccctccct attatcgatg aattgcttga 2700 tgagttatcg ggtgcacagt ggtttaccaa gcttgatctt cgatcgggtt atcatcaaat 2760 acgaatgaat tctgccgatg agcataagac tgctttccgt actcaccatg gtcactttga 2820 attcaaagtg attccctttg gtcttactag tgctccagcc acctttcaag gggtgatgaa 2880 tagcattttg tcctcgctct tgcggcgctg cgtcttggtt ttcatcgaca atattctgat 2940 ctatagccgc tcgttggagg aacatgttaa gcatttgagg gctgtttttc agattctcgc 3000 tcggcatcag ctcaaagtca agaagagtaa atgctcattt gcacaacagc ggttatcgta 3060 tctgggtcat gtcattagtc caaatggagt ggccacggat gaggagaaaa ttcaggctgt 3120 gcaaatgtgg cccacaccta cctctatcaa ggaattgcgc agttttttgg gtttggcggg 3180 atattatcga aaatttgttc gacattttgg tattctcagt aagccactca ctaatatgtt 3240 gcgcaagggt cagattttca tctggacgtc agtggctgaa gaatcctttc aagctctcaa 3300 acaagctctc atttctgccc ctgttttggc gatgcccaac tttgctcttc ctttcacagt 3360 tgagaccgac gcctctgata aaggaatcgg ggttgttctg ctacaaaatg atcatcccat 3420 agcttttttg tctcgtgctt tgggtcctcg ccatcacgga ttatctactt acgaaaagga 3480 aagtttagct attatgcttg ctgtagagca ttggcgccca tatcttcagc atgcagagtt 3540 ttgcatacgt actgaccacc gtagtttgtc cttcttgact gaccagcgtt tgtctactcc 3600 ttggcaacag aaggcagtca ctaagcttct tgggttgcgt tatcgcattg tgtataggaa 3660 gggcactgag aatggggcgg ctgacgcatt gtctcgtgtt tctgatcctt tcctggttat 3720 gttgttggct ttgtcaattt gcattccgga atggatgcaa gaaattatta atggttatca 3780 acaggatccg gatgcttgca gtaaggttca ggctctttgc atcaataatg ctgcagttcc 3840 tcagtttact ttgaagaatg gaattttata ttttcaagat tgcatttgga ttggtcagaa 3900 tagctctgtt cagcagaaga tcttagctaa ccttcataca gcggccattg gtggccactc 3960 tggtattcag gtgacttacc aacgcatcaa gcagctcttt gcgtggcctg gattgcgtgc 4020 agatgtggtc cgatttgtgc aaagttgcga tatctgtcag cacgccaaat cagaacatgt 4080 gcggtatcca gggtttttgc aaccattgcc ggttcctgat cagtcttggc cagtggtttc 4140 tttggatttc atcgaaggcc ttccccgttc cgcatcattt aattgcatct tagttgtggt 4200 tgacaagttc tctaagtatg cacactttgt ggccttggcg catcctttca cagcttttga 4260 agtggctgaa tcttatatgc aaaatataca tcggttgcat ggattacctt aagctctcat 4320 ctctgatcgg gatcgcattt tcactagcac attgtggaca actctctttc gattggctgg 4380 tactcaatta aggatgagct cttcttatca cccctagaca gatggacaaa ccgaacaagt 4440 taatcagtgt ttggaaacgt ttttgcgttg ctttgtgcat gcttgtcctt ccaaatggag 4500 ccgctggctg accctcgctg agtactggta taatacctcc tttcactctt cgttgggtac 4560 cacacctttt gaggttctct atggccacaa accgcgctac tttggtttaa cagcagctgc 4620 agcttgtcca tcttcggacc ttgctaattg gctaacagaa cgtgaccaca tgctatcctt 4680 gattcgggag catttgcagc gggctcaact acgaatgaag tctcaggctg atgctaagcg 4740 ctctgaaaga gagtttgctg tgggcgattg ggtgtatatg aagctgcagc cctttgtcca 4800 gcaatcagtt gtcactcgca ctaatcgcaa gctttctttc cggttctatg gtccatttca 4860 ggtgcttgcg cgcgtcggcc aggtggctta tcgtctggcg cttcctgcat ctagtttgat 4920 tcattctgtg gtgcatgttt ctcaactcaa gaaggcattg gctcctactg aaacagttca 4980 atctcaattg ccggttttcc ttgctgatca agatgcttct ccaactcctc ttcgcatttt 5040 ggatcggcgt tttgttcgta agggagccaa actggtggaa tttgttcagg ttacttggtc 5100 tggaccagat gctgaggtga tcacctggga gaatgctcaa gaattgcggc atcgctttcc 5160 atcggctgaa gcttggggac aagcttcgtc tcaatggggg gagaatgtca cggcatcgtc 5220 atcgtcatct cctgttcctc atcagacaag cgatgcagct tctccgtcgg accaagatgg 5280 gctcagaaag tcgcattgtg aacgacggcc caatgcggcc tataacagga gtgagtggac 5340 ccagtagtga ctggctgggc cacatgtaag ggagagagat ccaatggctc attgctatat 5400 aaggatcggc agagaagaga tgtgatttga acaatgtaaa aacagaattc cccatctaaa 5460 tcaatccttc tctgttctat ctctgcttct ctgagttctt ccttcttcct tccaatttct 5520 tccaaaatcc tcacgaatcc tccattgttg cggtacaaag ctagggtgcc gtgaca 5576 // ID KIDDOA repbase; DNA; ORY; 269 BP. XX AC . XX DT 10-JUL-2002 (Rel. 7.06, Created) DT 10-JUL-2002 (Rel. 7.06, Last updated, Version 1) XX DE Consensus sequence of MITE family Kiddo-subfamily A. XX KW Harbinger; DNA transposon; Transposable Element; MITE; KiddoA. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-269 RA Yang G. and Hall C.T.; RT "Consensus sequence of MITE family Kiddo-subfamily A."; RL Repbase Reports 1(4), 23-23 (2001). XX DR [1] (Consensus) XX CC KiddoA is a subfamily of MITE family Kiddo. The estimated number CC for Kiddo in rice genome is about 1200. The consensus TSD is TTA. XX SQ Sequence 269 BP; 73 A; 71 C; 58 G; 67 T; 0 other; ggggctgttt ggttcccagc cacactttac cattacttgc caacaaaagt tgccacacct 60 tgcctaaggt gaggtgatca aattgttagc cacaacttac taagcctaag ggaatcttgc 120 cacacttttt tgagccattg acacgtggga cccaatttgt tggaggggaa tcttgccaca 180 actgtggcta caaccaaaca cctgtcaaat ttgcctaacc ttaggcgtgg caaactgtgg 240 caaagtgtgg cttgcaacca aacacaccc 269 // ID ATLANTYS-I_OS repbase; DNA; ORY; 10724 BP. XX AC . XX DT 06-DEC-2004 (Rel. 9.11, Created) DT 06-DEC-2004 (Rel. 9.11, Last updated, Version 1) XX DE Internal domain of rice ATLANTYS_OS gypsy-like endogenous DE retrovirus - a consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW ATLANTYS superfamily; ATLANTYS-I_OS; ATLANTYS-LTR_OS; KW Gypsy-like endogenous retrovirus; SZ-19LTR; gag; pol. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-10724 RA Gentles A. and Jurka J.; RT "ATLANTYS_OS, a rice Gypsy-like LTR retrotransposon."; RL Repbase Reports 4(11), 285-285 (2004). XX DR [1] (Consensus) XX CC ATLANTYS_OS is a Gypsy-type LTR retrotransposon from Oryza CC sativa. It has ~1500 bp LTRs, and a 5 bp target site CC duplication. There are approximately 30 full-length elements CC in the rice genome, with average similarity to the consensus CC of 90%; along with numerous fragments. ATLANTYS_OS is related CC (59% similarity) to the Arabidopsis thaliana elements CC ATLANTYS1 and ATLANTYS2. ATLANTYS_OS has weak similarity also to CC RETROSOR1 and RIRE2 from rice. A characteristic feature of CC these retroelements is that the normal env encoding domain is CC replaced by an ORF for a protein of unknown function on the CC opposite strand. The corresponding LTR is ATLANTYS-LTR_OS. CC gag-pol: CC MEFKVRVHGVQGDGAQGLQGGNLNQNSDAAQDFFNNFQDRVDYAVHHALINQSGVLVNTLSNMM CC KSIADGSIAEHQAAGPVYLQGGVFPNYRPLITDVQPSIQAVPPVAPSAQPTAPASTPLPAPSAL CC APGQLVNPRLLMREQPQHSGQVVNRLTQDQVAAMFLPPQPTVDPIQQQPIQQTPPIQQVVQPIQ CC QQVVQPVQQTPPRQQPLQPIQQTPLRQQIYGQFEPMQQQSQGAAQQRPWADVIADVMREQFGLK CC PKETGSLYRQPYPEWFERVPLPNRFKVPDFSKFSGQDAIKQRHDEPVHEYIQRFREMRNKCFSL CC SLTDAQLADLAFQGMIAPIREKFSSEDFDSLSHLIQKVTLHEHRSAEARKXSKKVNHVCPYMYG CC SDDDEDDSEIAAAEWVRSKKVIPCQWVKSSGKEEKYDFDITKADKIFDLLLREKQIQLPAGHTI CC PSAEELGKKRYCKWHNSGSHSTNDCKVFRQQIQVAIEGGKIKFDDSKKPMKVDGNPFPVNMVHT CC AGQTADRGRARGFQVNSAKIINKYQRKYDKQQEKHYEEDDDGFDPHWGSEFGIDQADVDEVEEE CC SAKLVLSPEQAVFEKPEGTENRHLKPLYINGYVNGKPMSKMMVDGGXAVNLMPYATFRKLGRNA CC EDLIKTNMVLKDFGGNPSETKGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIP CC STMHQCLIQWQGDKIEIVPADSQLKMENPSYYFEGVVEGSNVYTKDTVDDLDDKQGQGFMSADD CC LEEIDIGPGDRPRPTFISKNLSPEFRTKLIELLKEFRDCFAWEYYEMPGLSRSIVEHRLPIKPG CC VRPHQQPPRRCKADMLEPVXAEIKRLYDAGFIRPCRYAEWVSSIVPVIKKNGKVRVCIDFRDLN CC KATPKDEYPMPVADQLVDAASGNKILSFMDGNAGYNQIFMAEEDIHKTAFRCPGAIGLFEWVVM CC TFGLKSAGATYQRAMNYIYHDLIGWLVEVYIDDVVVKSKEIEDHIADLRKVFERTRKYGLKMNP CC TKCAFGVSAGQFLGFLVHERGIEVTQRSVNAIKKIQPPENKTELQEMIGKINFVRRFISNLSGR CC GACFEFAYTIKPYATNNQAEYEAVLKGLQLLKEVEADAIEIMGDSLLGIFGRQCWRIVSDIIRG CC VKIVRSLEQFSERRRRL. XX FH Key Location/Qualifiers FT CDS 0..0 FT /product="ATLANTYS-I_OS2p" FT /translation="MKVVNRPSVTEAEFPRLEPIVEDDGEERTHRRCMSYG FT EYASTPTDAGAKLSAELLKDWFCSFYEGFQKDARVWPHQGTSRCRQEKENQ FT IIGCEYLGSSSKEKDQVKKTKPTDDLPALDPSIEQALDEEEIEDDVDQAAA FT EPPPPPSPPVQQSSSDQTPSAVGSHHIEEEEQPAAPAIPPHVHKQVYKEEL FT GSIHDKPSDKTTMLRPTEYAIAEDNQKFSA" XX SQ Sequence 10724 BP; 2957 A; 2002 C; 2738 G; 2985 T; 42 other; cgcttttggc acgcccggtg ggaccgataa gaagtcagcc aacaattctt cctcatggcc 60 gagaaaccac caccatcacc atcctcggct agcccaggct ctgttaaaga aaagatccag 120 aagttgggat tgactgacgt caatgaagga aacgtcgtgc ccatcgatcc agagaaattc 180 acacctgagc agaagaaaga ttttgaagca atgttgcagc aagcacggga tcagttcttg 240 aactcattca tgcagacccg caagggaaca cttgttcaga agtataaart aaaggtagtt 300 gctgatgatc ctgggaccag ttcttctaaa gatggagaag ggaaacaagc tccagatggc 360 tcggctcaac cgagtgacaa aggtgctacc gacggttctc taggaaatca aggtgacaay 420 tctcaaggag tccatggagt tcaaggtgag ggtgcatgga gttcaaggtg atggtgctca 480 ggggttgcaa ggaggaaatc ttaatcagaa tagtgatgcg gcacaagatt ttttcaataa 540 cttccaagat cgggttgact atgctgtgca tcatgctttg atcaatcagt ctggggtgtt 600 agtcaatacc ttatcaaaca tgatgaagtc aatagccgat ggttcaatag ctgagcatca 660 ggctgcaggc ccagtttatt tgcaaggagg tgtctttcca aattatcggc ctttgatcac 720 cgatgttcag ccatctattc aggcagttcc ccccgttgca ccatcagctc agccgacggc 780 gccggcatcg actcccttac ctgctccatc agcattggca ccaggccagc tggtgaaccc 840 tcggttgtta atgagagagc agccacagca tagtgggcag gttgtgaatc ggctgacgca 900 agatcaggtt gctgccatgt ttctgccgcc tcaacctact gttgatccaa tacagcagca 960 gccgattcag cagacacccc caattcagca ggttgtacaa ccaatccagc aacaggtcgt 1020 gcaaccagtt cagcaaacgc caccaaggca gcagcctctg cagccgattc agcagacgcc 1080 gttaagacag caaatcgttc agccgattca gcaccaaggy tcaatgagcg catcggccgg 1140 gtttgcaacg cctggtggtc agcctgtaca acaattttta aatcaagttg tcccagaaca 1200 cttggttcac caygtacagc cggatggcac agtaatgcct caagttgttc ctgagcattt 1260 ggtrcgtaat attcagccga accttcataa ttaccaaggg ggcaacttga attatcaata 1320 tcagcctcct tccccgcaag cccaatatca gccaggggga ttggctcaac ctcagtttgc 1380 gtctcagtac ggtcagttcg agcccatgca acaacagtca caaggagcag ctcagcaacg 1440 accgtgggcc gatgtgattg ctgatgtaat gagggaacag tttgggctta aaccaaaaga 1500 gactggaagc ttgtatcggc agccttaccc tgagtggttt gagagagttc ctctccccaa 1560 tcggttcaaa gttccagact tctccaaatt ttcgggacaa gatggtgtgt caacttatga 1620 gcacattagc cgatttttag ctcagtgtgg tgaagcatcg gctgtrgacg ctctgagggt 1680 taggttattc cggttatctt tgtctggatc ggcttttact tggttttctt ctttgccata 1740 tgggtcgatc aatagttggg ccgatttgga gaagcaattc cacagctatt tctacagtgg 1800 ggttcatgag atgaaattat ctgacttgac agcgattaag cagcggcatg atgaacctgt 1860 gcacgagtat attcagagat tcagggagat gaggaacaaa tgcttcagct tgagtttaac 1920 tgatgcccag ttagccgatt tggcctttca gggtatgatt gctccgatta gggagaaatt 1980 ctcgtctgaa gactttgata gcttgtcaca tctgatacag aaggtaacct tgcatgagca 2040 taggtctgcg gaagctagga aaarctctaa gaaggttaat catgtttgtc cttacatgta 2100 tgggtcggat gatgatgagg atgattctga aatagctgca gccgaatggg tgaggagtaa 2160 aaaggtcata ccatgccaat gggtaaagag ttctggaaaa gaggagaagt atgactttga 2220 tattactaaa gctgacaaga tttttgattt gctactccga gagaagcaaa ttcaacttcc 2280 tgctggtcat acaattccat cggctgagga attaggcaaa aagaggtatt gcaaatggca 2340 taattctggg tctcattcta ctaacgattg caaggttttt agacagcaga ttcaggtggc 2400 cattgaggga ggcaagatta agtttgatga ttccaaaaag ccgatgaagg tcgatggtaa 2460 tccttttcct gttaatatgg tgcatacagc tggccaaaca gccgataggg gccgtgcaag 2520 gggttttcag gtgaattcgg ctaagattat caacaaatat cagaggaagt atgacaagca 2580 gcaggagaag cattatgaag aagacgatga tggttttgat cctcattggg gttgtgagtt 2640 ctttagattc tgttggaatg aaggtatgag gttgccatct atcgaagact gtcctgggtg 2700 cagtgatatt gccgagagct caagccgatc atataatagg ggcaatcggc taaggcagac 2760 aagagttcct gttcatcaaa gattgggtcc agtgaatcaa gatcgtggcc aagaggacaa 2820 tgaaatcagg aagactcaat ggtgtccttc tggtattttc acgaagaatc agaagagaag 2880 ggttcaaaga ttgaggaaca gggagcgctt tcaggaggty gaacaagaaa ttaatcatcg 2940 gctgaagaaa gcaaagccga ggcaggagtg gcgtgttaag aatcaggttc ctgtagccga 3000 tgatgttgca gccgatgagg caaagaggtt ggcaaaaggg aagagtgttg tgacggcacc 3060 agttaacatg gtytttacct tgccagccga attcgggatc gatcaagccg atgtcgacga 3120 ggtggaagag gaatcggcta agttggttct gtcaccagaa caggcagtgt tcgagaagcc 3180 tgaggggaca gagaatcggc atcttaaacc attgtatata aatggctatg tcaatgggaa 3240 gccgatgtct aagatgatgg ttgatggtgg ggcygcggta aatttgatgc cttatgctac 3300 gttcaggaag ttgggtagaa atgccgagga tctcatcaag acaaatatgg tgctcaaaga 3360 ctttggtggc aatccatcgg aaaccaaagg tgttctaaat gtggagctga cagtcggcag 3420 taagactatt cctaccacgt tttttgtcat cgatgggaag ggttcttaca gcttgttgct 3480 tggaagggat tggattcacg ccaattgttg cattccttca actatgcatc aatgcttgat 3540 tcagtggcaa ggcgacaaga tagagatcgt gccagccgac aggtcagtta atgttgccag 3600 tgccgattta gctctttggg agatggatgg ccttgattgt ttatctggaa aagtttggga 3660 tggagatttt ctaaaagtgt ccgattctga tatacagcca attgaagatg gagaacccaa 3720 gctattattt tgagggcgtc gtggagggtt caaatgtcta caccaaggat acagtagatg 3780 atctcgatga caagcaaggt caaggtttta tgtcggccga tgatttggaa gaaatagata 3840 taggtccagg cgatcggcca aggccgacat ttattagtaa gaatttatct ccagaattta 3900 gaaccaagct gatagagctc ttaaaagagt ttagagattg cttcgcttgg gagtattatg 3960 agatgcctgg actcagccga tcgattgttg aacatcggct acctatcaaa ccaggggtta 4020 ggccacacca gcaacctccg aggagatgca aagccgatat gcttgaacct gtcaargctg 4080 agattaaacg attatatgat gctggtttta ttcgtccttg ccgatatgct gagtgggttt 4140 ctagtatagt tcctgttatc aagaagaacg gcaaggtcag ggtgtgcatt gattttcgag 4200 atttgaataa agctacaccg aaagatgaat atccaatgcc agtagccgat cagctggttg 4260 atgctgcgtc agggaacaaa attttgagtt ttatggatgg aaacgcagga tataatcaaa 4320 tttttatggc tgaagaagat atccataaga cagcttttag atgtcctggt gcaatcggct 4380 tatttgaatg ggttgtcatg actttcggct tgaagagtgc tggagctaca tatcaaagag 4440 ccatgaatta tatatatcat gatctaatcg gctggttggt tgaagtctat attgatgatg 4500 tggttgttaa gtctaaagaa atagaggacc acatagccga tttgaggaag gttttcgaga 4560 gaaccagaaa atatggcttg aagatgaatc cgacaaaatg tgcttttggt gtatcggctg 4620 gccagttttt gggatttctt gttcatgaga gggggattga ggtaactcaa aggagtgtta 4680 atgcgatcaa gaagattcag cctccggaga acaagacaga attacaagag atgatcggca 4740 agataaattt tgttagaagg tttatttcta atttgtctgg aaggttagaa ccttttacac 4800 cattgttgag attgaaagcc gatcagcagt ttacttgggg ggcagagcag caaaaggctt 4860 tggataatat taaggaatat cttagctctc ctcctgtttt gattcctcca cagaaaggaa 4920 taccttttag rttatattta tcggccggtg agaagtcaat cggctcagtc ttgattcagg 4980 agttggaagg aaaagaacga gttgtatttt atctcagtcg tcggctcttg gatgcagaaa 5040 ctagatattc ccctgtggag aagttatgct tgtgtttata tttttcatgt acaaggttga 5100 ggcattatct actgtccaat gagtgtactg ttatatgcaa ggccgacgtt gtcaaataca 5160 tgttatcggc tccaatattg aaaggaaggg ttggaaagtg gatattttcc ttaactgagt 5220 ttgatcttcg gtatgagtca ccgaaggcga ttaagggaca agctatagcc gattttattg 5280 tggaacatcg tgatgattca atcggctcgg ttgaaatagt gccatggact ttattctttg 5340 atggatcggt gtgtactcat ggttgtggta tcggcttagt tataatttcc cctagggggg 5400 catgtttcga gtttgcttat actattaaac cttatgcgac taataatcaa gctgagtatg 5460 aggcagtgct caaagggttg caattactca aggaagttga agccgatgct attgaaatca 5520 tgggggattc tttgctggta atcagtcaat tggcaggaga atatgaatgc aagaatgata 5580 cattratggt ttataatgag aagtgccaag aactgatgaa ggartttcgg ctggttactt 5640 taaagcatgt atctcgagaa caaaatattg aagctaatga tttggcccaa ggggcatcgg 5700 ggtataagcc gatgatcaaa gatgttaagg ttgaaattgc agcaatgaca gccgatgatt 5760 ggaggtatga tgtgcatcaa tatttacata atccatctca atcggcttct aggaaattaa 5820 gatataaggc gttgaagtat actctattgg atgatgagct ttattatcgg acgattgatg 5880 gagtgttact taagtgtttg agtgccgatc aggctaaagt tgcaatcggc gaagttcatg 5940 aaggaatttg tggtactcat caatcggctc ataagatgaa gtggttactt cggcgtgcag 6000 ggtatttttg gccgacaatg ctggaggatt gtttcagata ttataagggg tgtcaagatt 6060 gtcagaagtt tggagcaatt cagcgagcgc cggcgtcggc tatgaatcct attattaarc 6120 catggccatt yagaggttgg ggaattgata tgatcggtat gataaaccca ccatcgagta 6180 aaggacataa gtttatattg gtggcgactg attatttcac caagtgggta gaggcgattc 6240 ctttgaagaa agttgattct ggggatgcaa ttcaatttgt tcaagaacat ataatctacc 6300 gatttggtat tcctcaaact attacaactg atcaaggttc aatcttcgtg tccgatgagt 6360 ttgttcagtt tgccgatagc atgggtatca aattgttgaa ttcttcacca tattatgcac 6420 aagctaatgg gcaggccgag gcatctaaca aaagtttgat caaattgatt aagcggaaaa 6480 tttctgatta tcctcggcaa tggcatactc ggttggccga agcattgtgg tcttatcgga 6540 tggcttgtca tggatcgatc caagttcctc cttataaact tgtttatgga catgaggctg 6600 ttttgccatg ggaagttaga atcggctcta gaagaacrga rttgcaaaac gatttaacag 6660 ccgatgagta ttataacctt atggccgatg agagggagga tttggttcag tcacgattgc 6720 gagcccttgc aaaggttacc aaggataagg aacgtgttgc tcggcattat aataagaaag 6780 tggtacctaa agatttttcg gaaggtgaac ttgtatggaa gttgattttg ccgattggwa 6840 ctcgtgatag yaaattcggc aagtggtcgc cgaattggga aggaccgttc caaatttata 6900 aggttgtgtc taaaggagca tatatgttgc aagggcttga tggtgaagtt tatggacgag 6960 cgctcaatgg caaatacttg aagaaatatt acccaagtgt ttgggttaac gcatgatcgg 7020 ctagtgttgc cgatgcatga cagccgatgt gtttacatcg ccttgagatg gccgatattg 7080 ttatatcgcc cttagttgtt tttcatattg taatcggttg tggtttgccg atgtacaatg 7140 gccgatattg ttatatcgcc cttagttgtt ttataatttt atcaatgctt ttgacattgt 7200 aaaattaggg gggcacatat atatacaaaa tgcaaatttt gcaaatttag aagttatatt 7260 aatcggcaca aaggattgtc aagacagtaa agtattagag tatcttagcc gattacaaaa 7320 atttctaagt cctattacac aaaagttatt gagacaagta ttgctggata gccgaaatag 7380 ccctttgcct aatttgttct acttcttcaa tggcttgggc atcttgagca tcagttccag 7440 ggatgacttt cagggacttg gtcagrtcag caacattctt gatagccgat ttgagccttg 7500 ctttttgttc ttcgatagat tttgggagat cggctagctt tttgtgctcc atatccagct 7560 cagcattgca ttcttcaagt tgtgccaaga gctcaatctt gcgagcttcg agccgatcaa 7620 tattggattt gatcggacct tcagatagct gatcaagttt ggmtttttct tcatgcacaa 7680 gctgccgatt ggcttggatt gtggcttcaa tctccttgcg ctcacggcgt tcggctagtc 7740 ttagcttggc tttttccagc ttgaattgat gttgctcaag ataaacggct ggagttagga 7800 catcggctaa ctcatctggr attagagctt gaacttcatg cagccgtgtc ctaattgatc 7860 cacagtcaac caccaagcta tctagagatg akgcttctag ccgatgagag atatcttcaa 7920 gtgttttctt cacatcatca gataagggag ctagagcttt gcttgaagta tcttcttctg 7980 cctcatcaag ataatctttg atgtcaaaag agaagagatc ggctaraacc tgcagagaca 8040 atttcagaaa ggttaagagy taagtaaata tagccgatct aaattsttgm gwcaaaggaa 8100 aacttactgg gatagcagga gcagctggtt gttcttcttc ctcaatatga tgactcccca 8160 cagccgatgg agtttggtca cttgatgatt gttgtacagg aggagaagga ggaggaggag 8220 gctgtaaaga gacaagtgtt agacaaaatc ggctgaaata attaataaaa attaagaata 8280 tcttactggt ggagctggtt tgagaattgt tgctgccgat ttcttcttca cagcagtttt 8340 cttcttctgc aactacaaaa tctatgagta atcggctgaa aaaaaaataa ttataaaagg 8400 gatcaaagag agatgcttac tcttgaaaag tgagcggggg cagaaggagt tggaggtgtt 8460 tgcttgggyg aagccgatgg tgttctttct gtatcactta cttcggctgc agcctgatca 8520 acatcatctt caatttcttc ttcatccaga gcttgttcaa tggatggatc caaggcaggc 8580 agatcatcag ttggcttggt tttcttgact tggtcttttt ctttggagct agagccaagg 8640 tactcacagc cgatgatctg gttttccttt tcttgcctgc atcggctggt tccctgatga 8700 ggccttgaag gagagttgaa gtcttggggg catgatagcc gatgacaggg ggagatagtc 8760 cacctccatt aggaatcaga cctggggcat attcaatgtt cctgccactg ttgctttgat 8820 gwggagggga ggattctgtt gtctgcaaaa caggagaaag attagtcaag aatgaatcgg 8880 ctaaccagtt tataaattta gtgatgacaa agtttacctg gggtatgaca tcagggaata 8940 gatctgtcat atacattgaa gccgattgat gaaatagatg cagcttccat tcaccccacc 9000 atctgtcaaa gtttttgctc ctgaatcctg ccaactcaat attgtcaatg ctgcctagag 9060 ggggtccttg gaggttaagc agccgatcca tcattagagt tgatgaaatt tctcctcggc 9120 attggatctt gtcggcaaag aataagccga ttgggagttg gcccaatcca agttgtctag 9180 ctgarctcat tgggtgataa aaytcgtagg agacttggat gtttcttcct tgatgaatgc 9240 cgacaggaag gatgcatggg ctgattgcag ctgtgaagac ttccctggat ttttgatatc 9300 tttcatgatt gatgtcttca aatctgaagt ctgatggrag ttcaaggtct gctgagtctt 9360 cataaagaaa ccaaactcga gcatctttct gaaagccttc ataaaagctg cagaaccaat 9420 ctttgagcag ctcagccgat agctttgctc cagcatcggt tggtgtggat gcatattctc 9480 catatgacat gcatctgcga tgagtgcgtt cttctccatc atcttctaca atcggctcta 9540 gccttgggaa ttcagcttct gttacagatg gccgattgac aactttcatg actatcaggt 9600 ttaaccaggt ttgcagcagc caccatggtc cacctgctcc aactactgag ccgacggcta 9660 tcttagccga tgcattgttc aacatttggt atagatagcc gagaaggatt ttgcccaaag 9720 gaaattgttt ctttgattct aaggcttcgg ctacaaattg ccaattggtt gtagggccac 9780 agctggatcc acagaagaga aacttttcta gccacattag caagaaagct acatgctctc 9840 gaggagtgac aggcccttgg cccatatatg ccgctacata rccagaccaa cctcctatgc 9900 ttttggtctt gaagtcaaat tggttcttgg tgttcatact catagggtta gccgatgaag 9960 ttacatctaa tccagtratc atgatgatgt cgatcaaagt tggagtcatc ggcccttggt 10020 tgaacaagaa ggcattgatg gtgttggacc agaaataggt ggcrgcwgcc atcagaggtt 10080 catccttagc agaattggct atggtgaggg caagtgcttg gccgattcca atttcatccc 10140 agtgaacttt cttactagcc gatacgcgtt tgtaccatgt ggtccagcty ttctcagggt 10200 agtttctcga gagatggcca agacttgaag gtattcttcc agtgacccag gttagggttg 10260 gctagtctaa aggggatcct gttggtttca ccaatgatga aatcagtggg gtcaagattg 10320 ccgattgggc caagaaagta gtggttttcg tgcgataggc tgggaatcgc aactaggttg 10380 gaaaggtgct acaaatccaa aggaatcgag aagaagaaaa caaatgagaa agagaaaatc 10440 gatctgatgc taagaaargg gatctagccg atgagaactt acctcagcgt actcggcyga 10500 tggcgcagca gatgggctgg tggaagacga catcgccgca ggcggagatc tggccggaga 10560 tgaagtcgcc tgggratcgc ctttgcgtcg gaggaatcgc cggagagaga gaggacaaag 10620 tttcgcttga gcggtgaaaa cggaagtcac ggtgtgagat ttctcgaggg taacggttag 10680 tatttaaagc actagaataa cggtcggaaa acggcaagtg cgaa 10724 // ID CLOUD repbase; DNA; ORY; 734 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 06-NOV-2002 (Rel. 7.1, Last updated, Version 3) XX DE Rice Mutator-like non-autonomous DNA transposon CLOUD. XX KW DNA transposon; Transposable Element; Nonautonomous; CLOUD; KW Mutator-like; non-autonomous; target site. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-734 RA Jiang N. and Wessler R.S.; RT "CLOUD: a Mutator-like non-autonomous DNA transposon from Oryza RT sativa."; RL Repbase Reports 2(7), 8-8 (2002). XX DR [1] (Consensus) XX CC 9bp target site duplications. XX SQ Sequence 734 BP; 230 A; 139 C; 130 G; 235 T; 0 other; gagtaaagtc catcaccagt ccctaaactt gtacccctgt gtcatcccgg tccctaaact 60 cgcaaatcga ccgttcagat cctcaaactt gttcgactgt atcatcccgc tccctaaact 120 tgcagatcac tcgtttaaat cctccaactt gttcagctgt atcacccagt ccctaaactt 180 ggatttgaat atcatctgtg tcaaatagga cggtgtaaag actttatatt taaaaataat 240 tcataacttt tatgtgaact ctaataaaga caaactttat atcaaacttg tagccctcga 300 cacgatctac aactttgtag ttgaattttt tttattttaa gtcatttttg ttccaaaatg 360 taattttaaa attaaaattt caaaatctat aaatatgcaa caatattttg ggaccctaaa 420 cagttttaat tcaaaaaatt ttcaactaca aagttgtagg tcgcgtcgag ggctacaatt 480 ttgatataaa gtttgtcttc attagagttc acatgaaaaa gttatgaatt attttttgat 540 ataaagtttt tagaccgtcc tgtttaggga ctggggtgat acaactgaac aagttggagg 600 acctaaacga gtgatctgta aggaccggga tgacacagtc gaataagttt gaggacctga 660 acgatcgatt tgcgagttta gggaccggga tgatacaacg gtacaagttt agggaccggt 720 gatggacttt actc 734 // ID RBTVL_I repbase; DNA; ORY; 5949 BP. XX AC AE017121; XX DT 04-AUG-2005 (Rel. 10.07, Created) DT 05-AUG-2005 (Rel. 10.07, Last updated, Version 1) XX DE Rice tungro bacilliform virus like LTR-retrotransposon (internal DE portion). XX KW LTR Retrotransposon; Transposable Element; Interspersed repeat; KW RBTVL_LTR; RBTVL_I. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-5949 RA Kunii M., Kanda M., Nagano H., Uyeda I., Kishima Y. and Sano Y.; RT "Reconstruction of putative DNA virus from endogenous rice tungro RT bacilliform virus-like sequences in the rice genome: implications RT for integration and evolution."; RL BMC Genomics 5(1), 80-80 (2004). XX RN [2] RP 1-5949 RA Jurka J.; RT "A recent copy of LTR-retrotransposon related to Rice tungro RT bacilliform virus."; RL Direct Submission to Repbase Update (04-AUG-2005). XX DR Genbank; AE017121; Positions 209328 203380. XX CC LTRs are 99% identical. Present in multiple copies in the rice CC genome. XX FH Key Location/Qualifiers FT CDS 503..5788 FT /product="RBTVL_I_1p" FT /translation="MDISRSLFRRIASRDDNCSDKQKGKYDDIDELKDVAQ FT VDKQLERYQRDTLRAIRPQQVYCMGFFENKNGLYRISREVELSVLTKPVEL FT KIVAKEFENSLKYSGYKYIHQGMYIIGIKGMTRKKLGAKVLITLLDKRWDT FT INKASLGYLEGDMNENMLITYIAPDLMMPVNEFIDKMSFGFQTKGYEEFKG FT TNLLISIEFIGRLTNRSASKYKINVNDVIEKMHSKGIKFMSPLIIDSEERA FT GEKWPISEFIKNKTLSQPENFISYQDSKGNVSIRFTNYKTRASDDLDAESS FT DRDIIDNRRHSISELMEKLDHESEIKYYEDKLRDIADEYNNSMKSEWPKIR FT DKELYFYRELSRIKKQKKEKSLVIEIPRTQEIKIEQIKSEEPREEIQKLDK FT VLSEEEQWEVNEKLLLESYEEENNLIEEIENIEEEDNAEQYNDFIDSLDEE FT GLHNLDNAMEAMEVDLGTGKRKRYGEGSVKNEGERERPARAAGRWPPEKEE FT YSYHYIPGQYRHMGTKRRDFEKPIKFQNQKSDGAILNLAAHDPIDWPNIIS FT IWKGLIVQKYIQNQHNIGNKVEDMITYLETFLGESAKVLWEQWVEKNPNNY FT EELKRAGSNPHNFENIVSNIIIAEDPELGYTTLQNERLKEIEKLTLTSWKG FT IKEFSQHYLYNATTAKQGYNKGIVERYFNKLPDPLGSMIFEEYKKETEGAE FT INISQAITFVFKQLRKICTGIQAQRSMKHSDYNFCNKIIQIPLSYGEDRPR FT NKRNHRYQSRNSNNIKTKKRYFLRRSDNRAPFLHKRNVRRYNPKKTYDKTC FT RCFICNSPDHLSRTCPNKDQKRYSSTYEEQERVLIIDSVNENILVCDDEIK FT DDESIYSIIETDEIENTNEEYESTDEELDLIDELAGLKIELMDQLNCEHDW FT IRGKGDYNIKCAFCIYYPSQDNRVTCSICLKQACAECIKANKQKWRKEIEL FT ESDERILSSRVRVLENRINKLEVELENLKINYDIKALPENKDIQNTEFKEQ FT VITLKDSNTAKIIQLKDAITNFGNKYIVKLPFKEILGIRIPVKVKLSPKVS FT YKILALVDTGCTKNIIHDKYFIKCPEIVHTIDDNKAEVSTDMSGIKKIHNQ FT LAHNVEVYINGTKYIIDEITIRNLSMISDDMIIGLRFLQQSVQTTVIHEQG FT ITFIPYQNNVPYISEVRKRGGARIKPDNLEALNLESEERINEYELSENIDN FT YSFSSYLPKSMELPGKTSWEDRYLLKATKDFEYICREMASQKSEWLTNMSS FT WRLPQLPRGHGERFNHNFRITELQQGLLNLLWQTKNKKEKAHALNGLAYYF FT KNFVPSDQKITEKRAKIQDIPHHEERLLDYREEKSRDGQDKLPMEVEQSMA FT TDKNTKVFSDKILISADPASSMVAFHININNLLQSFPHNKPSSSTKRHDTI FT PQTPYILHNHPNLFLPQYILRTQPKAPCRSCAYKDSCKKKLKSQNPMSTTY FT ENLQPRLSFKTEQTLSCFGQDILDLVWQKFKERQMKIFLGLQDYFFDLLEG FT RERNPAIRVIIYMLPLLRLDDQAISDPSYRFLVLKAEINLQRFRNLPTYNH FT EEISLQTIIDHGLVNSIYATLDQILQSDLGNAVKDVCRRLGHGRYRIIFSS FT IPPKFTPPVRPAIHYIYIMKGQFNFQEDGPSKLSDEEEEIYTTVANHENWR FT LFSEAAEIEEAITTDYEYQLVFQNKITRIFISKFYNQSYEYFKGAGRIIKP FT DFGNECSKKSYYRSLAQWFQKTEPSEIDTVQSAPMIINEDNE" XX SQ Sequence 5949 BP; 2476 A; 867 C; 1070 G; 1536 T; 0 other; taggtttgtc tgaagcatag gtgtggtgta tattgtctga agcataagtg tggtatcaga 60 gcctggtaat catagagaag ctaaatttag aagctaatat tggaaagtta ataaatacca 120 aagataatat cgacataagg tgtagactaa gccatactga agaacatagt tggcactcta 180 ataatagcca actaaattta attgtagatt taatatataa tttctatata aattggagta 240 agagacaaga agatttagag caaaagttag aagatatata taaagaacaa aagcaatttg 300 tagaacaata ttcttttctt aataataagc taaatactac attagaatta ttagaagatt 360 ataagataag gcaaaataaa atttcacaga atagtgatta tattaaagaa ttactagaca 420 aaatcaactc tagtaaaggt aaggaaatag ttttggcttc atctggcata gtctcatctt 480 cacaagccat taattctgaa aaatggacat atctaggagt ctctttagaa gaatagcaag 540 cagagatgat aactgttctg ataaacaaaa aggcaaatat gatgacatag atgagctgaa 600 agatgttgca caagtagata agcagctcga aagatatcaa cgagatactt taagggcaat 660 aaggcctcaa caagtatact gcatgggatt ttttgagaat aagaatgggc tttatagaat 720 atctagagaa gtagaattaa gtgttctaac aaagccagta gaattaaaaa tagtagctaa 780 agaatttgaa aatagtttaa aatattcagg atataagtat attcaccaag gtatgtacat 840 aataggaatc aaaggaatga caagaaagaa attaggagct aaagtgctaa taaccttatt 900 agataaaaga tgggacacaa taaacaaagc atctttaggc tatctagaag gagatatgaa 960 tgaaaatatg ttgataacct atatagcgcc tgatttaatg atgcctgtaa atgaattcat 1020 agataaaatg agttttggtt tccaaacaaa aggatacgaa gagtttaagg gaacaaattt 1080 attaataagt atagaattta taggaagatt gactaataga agtgcctcca aatacaaaat 1140 caatgtaaat gatgtgatag aaaaaatgca ttctaaagga ataaaattca tgagcccttt 1200 aataatagac tctgaagaaa gagcaggaga aaaatggcca attagtgaat ttataaaaaa 1260 taaaaccttg agtcagcctg aaaacttcat aagttaccaa gacagcaaag ggaatgttag 1320 tattagattt acaaattata aaaccagagc ttcggatgat ttggatgcag aatcatctga 1380 cagagatatt atagataaca gaagacatag tatatctgaa ttgatggaaa aattagacca 1440 tgaaagtgaa ataaaatatt atgaagataa attaagagat atagcagatg aatataataa 1500 ctctatgaaa agtgagtggc ctaaaattag agacaaggaa ctttatttct atagagaact 1560 atccaggatt aagaaacaaa aaaaagagaa aagcttggtc atagaaatcc ccagaaccca 1620 ggaaattaaa atagaacaaa taaagtcaga agaaccaaga gaagaaatcc aaaagttaga 1680 taaggtatta agtgaggaag agcaatggga agtaaatgag aaattattac tagagagtta 1740 tgaagaagaa aacaacctga tagaggaaat agagaatata gaagaagaag ataatgcaga 1800 acaatataat gattttatag actcattgga tgaggaaggt ttgcataatc tagataatgc 1860 aatggaagct atggaagtag atttgggaac aggaaaaagg aaaagatacg gagagggttc 1920 tgtaaaaaat gaaggagaaa gagaaagacc agccagggca gcaggaagat ggcctccaga 1980 aaaagaagaa tattcatatc attatatccc aggacagtat aggcacatgg gcactaaaag 2040 aagagatttt gagaaaccaa taaaatttca aaatcaaaaa agtgatgggg ctatactaaa 2100 tctagcagca catgatccca tagactggcc aaatatcatt agtatttgga aggggttaat 2160 agttcaaaaa tacatacaaa atcagcataa tatagggaat aaggtggagg atatgataac 2220 ttatttagaa acatttttgg gtgaatctgc taaagtccta tgggaacaat gggttgaaaa 2280 gaatcctaat aactatgaag agctaaaaag agcaggaagt aatcctcaca actttgaaaa 2340 tatagtatct aatattatca tagctgaaga cccagaatta ggatatacaa ccctgcaaaa 2400 tgaaagatta aaagaaatag aaaaattaac tttaacaagc tggaaaggta taaaggaatt 2460 ttctcaacat tatctatata atgcaacaac tgctaagcaa ggatacaata agggaatagt 2520 tgagcgatat tttaataaac tacctgaccc attaggtagt atgatttttg aggaatataa 2580 aaaggaaact gaaggagctg aaattaatat ttcccaagcc ataaccttcg tgttcaaaca 2640 attaagaaaa atatgcacag gaatacaagc ccaaaggtca atgaaacatt ctgattataa 2700 tttttgcaat aaaataatac aaataccttt atcatatgga gaagataggc ctagaaataa 2760 aagaaaccat agatatcaaa gtagaaatag caataatata aagacaaaga aaaggtactt 2820 cttaagaaga tcagataata gagcaccttt cttacataaa cgaaatgtaa gaagatataa 2880 cccaaagaaa acttatgata agacatgcag atgtttcata tgtaattcac cagatcattt 2940 aagtagaact tgcccaaata aagatcaaaa aagatattct agtacatatg aagaacaaga 3000 gagagtttta attatagata gcgtaaatga aaatatatta gtatgtgatg atgaaataaa 3060 agatgacgaa tcaatatatt ctatcataga aacagatgaa attgaaaaca ccaatgaaga 3120 gtatgaatca accgatgaag agttagattt aattgacgaa ctagccggtt taaaaataga 3180 attgatggat cagttaaatt gtgaacatga ttggattaga ggaaaaggag attataacat 3240 taaatgtgct ttttgcatct attacccaag ccaagataat agagtaacct gtagtatatg 3300 cttaaaacaa gcttgtgctg aatgtataaa agcaaataaa caaaaatgga gaaaagagat 3360 agaattagaa tcagatgaaa ggatattatc tagtagagta cgagttttag aaaacagaat 3420 aaataaacta gaagtggaac tagagaatct aaaaattaac tatgatatta aggcattacc 3480 agaaaataag gatatacaaa ataccgaatt taaagagcaa gtgataacat taaaagacag 3540 taatactgct aaaataattc aactaaaaga tgccataact aattttggaa ataaatatat 3600 agtaaaactg cctttcaaag aaattttggg aataagaata ccggtaaaag taaaactatc 3660 acccaaggta tcatataaaa ttctagcact agtagacact gggtgtacaa aaaatattat 3720 tcatgataag tacttcataa aatgtccaga aatagttcat acaattgatg ataataaggc 3780 agaagtctct acagacatgt ccggaataaa gaaaattcat aatcagctag ctcataatgt 3840 tgaagtatac attaatggaa ctaaatatat aatagatgag attacaataa gaaacttatc 3900 catgataagt gatgacatga taattggcct aaggttttta caacaatcgg tacaaaccac 3960 agtaatacat gagcaaggaa ttacttttat cccatatcaa aacaatgtgc catatatctc 4020 agaggtacga aagcgtggtg gagccagaat caaacccgac aaccttgaag cacttaatct 4080 tgagtctgaa gaaagaatta atgaatatga gcttagtgag aatatagaca actattcttt 4140 ctcatcatat cttccaaaat ctatggaatt gccaggtaag acatcatggg aagatagata 4200 tttattaaaa gctactaaag attttgaata tatatgcagg gaaatggctt cacagaagtc 4260 tgaatggctc acaaatatga gttcatggag actgccccaa ctgcctagag gccatggaga 4320 acgatttaat cacaatttca gaataacaga gctacaacaa gggttattaa acctcttgtg 4380 gcaaacaaaa aacaaaaaag aaaaagctca tgccttaaat ggcctggcat attatttcaa 4440 aaatttcgtg ccctcagatc aaaagataac agaaaaaagg gctaaaatac aagatatccc 4500 tcatcatgag gaaaggttac tagattatcg cgaggagaaa tcccgtgatg gccaagataa 4560 acttcccatg gaagttgaac aatctatggc aacagataag aataccaagg tattctcaga 4620 taagattttg atctcagcag atcctgcttc gagcatggtt gctttccaca taaatatcaa 4680 taacctattg caatcttttc cacataataa accatcatca tccacaaaaa ggcatgatac 4740 cattccccaa acaccataca tactgcataa tcatcctaat ttattccttc cacaatatat 4800 actccggacc cagccaaaag caccatgtag atcttgtgcc tacaaagatt cttgcaaaaa 4860 gaaacttaaa agccaaaatc ccatgagtac tacatacgaa aatctccaac ccagattaag 4920 cttcaaaacg gaacaaactt tatcctgctt tgggcaagac atcctcgatc ttgtttggca 4980 aaagtttaag gagagacaaa tgaaaatatt ccttggactc caagattatt tctttgatct 5040 cttagaaggg agagaaagaa acccagccat acgagtaatc atatatatgc tccctctctt 5100 aagactagat gatcaggcaa tttctgaccc atcctataga ttcctggttc tcaaagctga 5160 gataaatctt caaagattcc ggaacctacc cacatacaac catgaagaaa tatctctcca 5220 aaccattata gatcatggtc ttgtgaattc catatatgca accctcgatc agatccttca 5280 atctgattta ggaaacgctg tgaaagatgt atgcaggaga cttggacatg gaagatacag 5340 gattatcttc tcctcaatac caccaaaatt cacaccacct gttcgtccag caattcatta 5400 tatatatatc atgaagggac aatttaattt tcaagaagac ggtcctagca aactatcgga 5460 tgaagaggaa gaaatatata caacagttgc taatcatgaa aattggagat tattttctga 5520 agctgcagaa attgaagaag ctatcaccac agattatgaa tatcagctgg ttttccaaaa 5580 caagatcaca aggattttta tcagcaaatt ctacaaccaa agttatgaat acttcaaggg 5640 agcagggcgc ataattaaac cggattttgg aaatgaatgc tccaagaaaa gttactacag 5700 aagcctggct cagtggtttc agaaaacaga gccatcagag attgacacgg tgcaatcagc 5760 accaatgata atcaacgaag ataatgaata aagatcttgt catccccgac aaagatcact 5820 attcaagata aggaatctac actattccag ataagtatgg atcttggtgg tcatgggcag 5880 ccagatgaat agaattcttt aagctaaata tgtttttcaa tatatattga taatagaata 5940 tcaataatt 5949 // ID RIRE5-LTR_OS repbase; DNA; ORY; 995 BP. XX AC AB105803; AB105803.1; GI:29027728; VERSION; XX DT 11-JUL-2003 (Rel. 8.06, Created) DT 11-JUL-2003 (Rel. 8.06, Last updated, Version 1) XX DE Oryza sativa retrotransposon RIRE5: Long Terminal Repeat. XX KW Copia; LTR Retrotransposon; Transposable Element; LTR; RIRE5; KW RIRE5-I_OS; RIRE5-LTR_OS. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-995 RA Ohtsubo H. and Ohtsubo E.; RT "Direct Submission."; RL Direct Submission to Repbase Update (13-MAR-2003)Hisako Ohtsubo, RL Institute of Molecular and Cellular Biosciences, The University RL of Tokyo, Section of Chromosome dynamics; Yayoi 1-1-1, Bunkyo-ku, RL Toukyo 1130032, Japan (E-mail:hohtsubo@ims.u-tokyo.ac.jp, RL Tel:81-3-5841-7854, Fax:81-3-5841-8484). XX DR Genbank; AB105803; Positions 1 995. XX SQ Sequence 995 BP; 254 A; 228 C; 238 G; 275 T; 0 other; tgttagatta atgggctagg cccaattaaa tcctaataaa ttccattggc ccacattaag 60 tgctatgggt aataatacca ccttggaaat ctaagtgaag aggtctcaac ttaaatacgg 120 agctagtgga gagtctctgt tgaccggttg agatggtgcg cggacaacca ggcggggcga 180 ggcgaggcga ggcagacagc tgctgctgcg ctctctcgtt ttgtaacgga cggtaataaa 240 cacggagaat tgatttcgta tcaatgaacg cgtcggttac ggaattaaac gtcgtgaatt 300 gattccgtcg gttacggaat taaacgccgt gaattgattc cgtattaacg agcgcgtcgg 360 ttacgaaatt aaacaccgcg gttgatgact ccgaacgtta ctctcgcgct cgcatatata 420 tactccgcag cgaccagaag gacggaggaa gttcttcacg actcttgcac ttcgagttcc 480 tcctcctctg ttcctgagct gcaaaatcct tccccggttc tgttcacctg cgcgcacagg 540 tgtacgggac gagcaggtgc ctccgaaact ccgtccgctt gagaacttgc acgggtaggc 600 gggcgatcaa gtttttgggt agcgcttcaa gcgcgactgc tcttgttctt cgcggctact 660 actgctgcat cgacgccttc accaagatgt cgacggagat tggagacaag aagatgaacg 720 acatcaacgg aggcaatact gcctcaaaat ccagcggtgg gacgttctcg gggtatactt 780 tcattctccc gattctatta gatgtttctt tgttaatact cttcgcaatg gcagcattgc 840 gttactatgt aaatgttgat gcttatttca tattaagcat actcaagttg tatacatcta 900 gcactgtcac tagatctact catattgcaa atgtcatgtt tattgtctta atattttgga 960 ttaaaatatg ccgaattatg accaaatttc caaca 995 // ID ATLANTYS-LTR_OS repbase; DNA; ORY; 1508 BP. XX AC . XX DT 06-DEC-2004 (Rel. 9.11, Created) DT 06-DEC-2004 (Rel. 9.11, Last updated, Version 1) XX DE Rice ATLANTYS_OS gypsy-like endogeneous retrovirus LTR sequence - DE a consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW ATLANTYS superfamily; ATLANTYS-I_OS; ATLANTYS-LTR_OS; KW LTR sequence; SZ-19LTR; gypsy-like endogeneous retrovirus. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-1508 RA Gentles A. and Jurka J.; RT "ATLANTYS_OS, a rice Gypsy-like LTR retrotransposon."; RL Repbase Reports 4(11), 286-286 (2004). XX DR [1] (Consensus) XX CC LTR sequence for ATLANTYS_OS gypsy-like endogeneous virus CC retroelement. Internal sequence is deposited as CC ATLANTYS-I_OS. Similar to rice LTR sequence SZ-19LTR. XX SQ Sequence 1508 BP; 407 A; 276 C; 304 G; 519 T; 2 other; tgttaacgac caaatttggt aatatcagca tcggaaaaga agattagatc gaagcggagt 60 cggaggcgga gatcgattcg ggaacagagc aagaatcggc tggagtccag atcggctacg 120 attaggatcg gctgggtctg agtcggacta ggtaagccga tacagccgat tccgacaata 180 cgacttggtg tatgacatcg ggttgarttg atgtgcttca agatgattgc cgcacatgga 240 tagagtcctg agaaggcaat tgtatctatt aattaggata ttttatgtaa tttccttaga 300 gatatgtttg ggcaaaagtc tgccgcaaag acttatggta tcttagagtt tgttagagat 360 aatagtcgtg tccggtatgg acatatcttg taattctcgg gtataaatag accccgagcc 420 ctatgtaatt tttaacacac gttcaataca atttcggcgc atcgccaccc ttttgcttta 480 gttttatttc gacgagttct tgctttcggg ttgagctgca tcggtttcga tcttcaacaa 540 gaggtaaaac ttgttatgac ggcttgtgtt ctcgggatta gtgcttccat ctttatgata 600 ctctaatctt gtttatgtaa ttcgtcgagt tatcatatat cttacataat ctctggcaat 660 atcgytatct aacctacaat cggctaacat ctgttaatag aaggcagccg attaggttaa 720 atatcgatgt tgacctagat tatataagat atctaccact ctatgaaact tccagcggct 780 tgattgtcta gatattgttc ttcttttcat acttaatgct gcatcagttg agtttgatct 840 attaagtcgt gcttagaata tcaatctcta gcctgccttc tggttgccga ttagggtagt 900 atcggagttt cagccgatct tatctgattt aactatattt gctctatatg cttcattgac 960 atgttaaatc tgccctttat gtcaagatct tgttgcattt aagtatatta ggcttttgtt 1020 tggtatatta tacttgtttt aatatcttaa tatagagtag tatcggagta ttagccgata 1080 catgctagat ctatctgatc ggctatgcta taaacatata taatcctgtt attaatatat 1140 atttcgatct aagtgattta tactgtctcg gcatggtgac cgatctatcc caatcacttg 1200 atttaagtat atatcgatat aagaactata tattgttaat atctacagcc gatcgagtag 1260 atttagttct ttattatcta tttataaccg ccgatcgatt catatatgac atcggctcaa 1320 agataaatga tatgtcatcg gcacctagcc gatcggctat catttataga tttaaccacg 1380 gtttctttgt ttctatttct tgttgattac aggatcaaat caactggcac gctaacacat 1440 ccgaaggcga gctttggacc tgcactggag ttaagcagat ctcccaggcc tcgtgttttc 1500 tgtcaaca 1508 // ID OSTE33 repbase; DNA; ORY; 1195 BP. XX AC . XX DT 11-NOV-2002 (Rel. 7.1, Created) DT 11-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Rice putative non-autonomous DNA transposon OSTE33 - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; OSTE33. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-1195 RA Jurka J. and Drazkiewicz A.; RT "OSTE33: a putative non-autonomous DNA transposon from Oryza RT sativa."; RL Repbase Reports 2(10), 24-24 (2002). XX DR [1] (Consensus) XX SQ Sequence 1195 BP; 351 A; 252 C; 255 G; 335 T; 2 other; ctggattttt cacaatttgg tccttttaaa aaaacttatt tcacaaatag acccctgaaa 60 aaacttatcc caaaaatggt cctttttggg gcgccagagt cgctggcgcc gtcgtccaac 120 ggacggcgcc agcctctctg gcgccgtcct cctgccaccg tggcggggcg gcgctgaggt 180 ggcaggggga gcgcgccagt gtggctggcg cccccccccc ccggattttt tttcttttat 240 tttttgatat tttttcacct taggagcaca caagaaccaa ccataaaaaa aataaactca 300 aatggacgaa tatgtgactt gtaaaatttt tcctctctct cctctctagt gtagaggaga 360 gagaggagag agatgtgcaa cttttttatt tttatttttt tttgatattt ttttcacact 420 taggagcaca caagaaccaa ccataaaaaa aataaactca aatggacgaa atatgtgact 480 tgtagaattt tccaaagctc taccgaaaag cttctcgcct cgaaaacaca atcttgcaag 540 cggaatttgg aggttctaat ttcgccgaac ccggcaaagc agggaaaaat taaatgtaac 600 tttttctgta gatgtccgtg gatatattat ttgcctgatt ccgagtccgt atgagaaagt 660 tacgcctgtt ttaagaaatg acacccgaat gtaaaaaaaa aacacaaccc taattttttt 720 tagtttggaa gattcaaaaa aaagtcacat atttttgaaa ttttttctat tttttggtgc 780 tatatgaaaa atcaaaataa ctattttcgg tagagctttg gaaaattcta caagtcacat 840 atttcgtcca tttgagttta ttttttctat ggttggttct tgtgtgctcc taagtgtgaa 900 aaaatatcaa aaaaataaaa naaaataaaa aagttgcaca tctctctcct ctacactaga 960 gaagggagag gaaaaaatgn cggcgggggg ggggggggcg gcgccagcca cgctggcgcg 1020 ctccccctgc cacctcagca ccgccccgcc acggtggcag gaggacggcg ccagagaggc 1080 tggcgccgtc cagcgactct ggcgccccaa aaaggatcat ttttgggata agttttttcc 1140 aggggtctat ttgtgaaata agtttttaaa aaggaccaaa ttgtaaaaaa tccag 1195 // ID SZ-54 repbase; DNA; ORY; 5202 BP. XX AC . XX DT 16-AUG-2004 (Rel. 9.07, Created) DT 29-AUG-2005 (Rel. 9.07, Last updated, Version 1) XX DE Rice retrotransposon SZ-54. XX KW Gypsy; LTR Retrotransposon; Transposable Element; SZ-53; SZ-54. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-5202 RA Jiang N. and Wessler R.S.; RT "SZ-54: a retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 108-108 (2002). XX RN [2] RP 1-5202 RA Jurka J.; RT "SZ-54: Classification corrected from non-LTR retrotransposon to RT Gypsy-type LTR retrotransposon."; RL Direct Submission to Repbase Update (29-AUG-2005). XX DR [1] (Consensus) XX CC SZ-54 has 391bp LTRs. Internal region is related to SZ-53. XX SQ Sequence 5202 BP; 915 A; 1799 C; 1517 G; 971 T; 0 other; tgtcatgtgg ggcacggcct atacacggcg tcgccgggcg cgagatgtgc ggagagctgc 60 ggagcgagcc gcagcgcgtg tcgcggcgca gagcgcgatc accatgaccg tggatggcaa 120 ggacgggctc agtggctagg atcggagtag ccttgattct aggagggttt gtttccaagt 180 tgttagcgtt tatttccaag ttagttagcc ggagggctat atactcttgt accgaaacat 240 ttgagaggaa agcatgaaag ttatcgtcta atctccctct tattctgtta agccactagc 300 tgaggggtat aacctcgcag gtgaggactg gagcgcgact acgagttacg tagtcgcggc 360 ccgccgtcgt tgagcgccca ggcgcttgac aacctggtat cgggatctcg tcgatcctcg 420 gcgtccgccg ccgccgcgcc tttccctacc accgccgcac ccgcgtctcc cgaccccgca 480 cccatcaacc ctagtccacc acccatcact gccaacacca gtccaccttc cccgtcatcc 540 tcgtcatccg tcgcctccaa ctccggtgac atgggtgaca acggcgacct caaggccgcg 600 atcgacgccc tcaccaagaa cgtcgccgcc atgcagtcgt ctatccaggc caacgccaag 660 gcgatcgaga acatcaccgc atcatcctca ggctccggcc cacggcacca ctccggcgag 720 caacccccag atcgcccccc caagcattgg cgcccggaga tgccgcgcta cgatggcaag 780 actgatcctc tcaccttcat caacaagtgc gaatcctttt tcttgcagca gcggattatg 840 ccggaggagc gcgtctggat ggcttcgtac aacctccacg acgacgccca gctgtggttc 900 atgcaaattc aggaggatga gggcactccg acatggccat gcttcaagga cctcatcaat 960 ctgcggttcg ggccaccgct ccgctcgact ccgctcttcg agctctcggc ctgccgccgg 1020 accgggacgg tcgcggagta ctcgtcgcag tggcaggcgc tgctgccccg cgcgggcaaa 1080 ctggaggagg cccagaagat ccagctctac accggcgggc tcctgccacc gcttagcctc 1140 caagtccaga tgcagaaccc ccagtccgtg gcgtccgcca tgagtctggc acggcagttc 1200 aagctcatgg ccgaatacac gaccgcgccg gccaaggctc cgggccgcgg cgtcctgggc 1260 gccccacaag cgcgtccggc tctgccggca cccccgccgc accctgacaa gacaccggcg 1320 gtcaccaacc agggcgaggg ccgccaggcg aagcgcctca ccaaggagga acaggcggaa 1380 cgccgccgcc ttggcctctg ctacaactgc aacgagagct acacccgggg gcacaaccgt 1440 gtttgccggc gcatcttcca cattgccggg gtggagctcg acgacgacgc cgccgccgac 1500 gctcatgagg agccgaccac ggaatcgccg gtcttctccc tgcacgcggt ggccggcgta 1560 ccgcgcggcg ggacgctgca gatcgcagtc accatcggcg gtgcgccact cgtcgccctc 1620 ctcgacagtg ggtcgaccca caacttcatc tctgccagcg ccgcgccacg cacgaggctt 1680 ccggtggagt ccagaccgcg gctcacggcg gtcgtcgcca acggcgagcg cgtcgcgtgt 1740 ccgggcgtca tccgcgccgc gccagtcgtc atcgacggca ccaacttcga catcgacttg 1800 tttgtaatgc ctcttgcagg gtacgatttg gtgctgggca cccagtggat ggccaccctt 1860 ggcgagatag tctgggactt cgccacgccg tctatggcgt tccacctcca cgggcacgcc 1920 ttccgctgga ccggggtgac gtctgctgct gcaccatcgc tcctctctac ggtggccagc 1980 gcgtccctcc tcgacgagct gctggcgtcg ttcgcggacg tcttcgccga acccgtgggc 2040 ctaccacccc cccgcggccg cgatcacggc atagtcctca agccggacgc ggcgccggtg 2100 gccgtccgac cataccggta cccggcggcc cacaaggacg agctggagcg gcaatgtgcc 2160 gccatgatcc accagggcat cgttcgccgc agcgactccg cgttctcatc gccggtcctc 2220 ctcgtcaaga aagccgacgg cacctggcgc ttctgcgttg actaccgcgc cctgaacgcc 2280 ctcaccgtca aggacgcgtt ccccatcccc gtcgtcgacg agctcctgga cgagcttcat 2340 ggggcgcgct tcttcaccaa gctcgacctt cggtcggggt accaccaggt gcggatgcga 2400 ccggaggaca tccacaagac ggcgttccgc acccatgacg gcctctatga gttcctggtc 2460 atgccgtttg ggttgtgcaa cgccccggca accttccagg cgctcatgaa cgacgtcctc 2520 cgcgatcacc tccgccggtt tgtacttgtc ttcttcgatg acatattgat ttacagcaat 2580 acttgggccg atcaccttcg ccacctccgc gtcgtcctca ccatcctgcg ccagcatcgc 2640 ctgttcgtga agaagaccaa gtgctcgttc ggagtcaact ccgtcgggta cctgggccac 2700 accatctcgg cgtcgggtgt ggcattggac cccgctaagg tccaggccat ccacgagtgg 2760 ccacagcccc gctccgcgcg tgccgtgcgc ggcttcctcg gcctggcggg ctattaccgg 2820 aagttcgtcc acaacttcgg ctccatcgcc gctcccctca ccgcgctcct gaagaaggac 2880 gggttcacat ggactgccga cgccgcggca gccttcctcg ccctcaagga ggccgtgacg 2940 accgcgcctg tgctggcgct cccggacttc gccaagccct tcatcgtgga atgtgacgcg 3000 tccacgtatg gcttcggggc ggtcctcatc caggacggcc acccgatcgc gttcttcagt 3060 cggccggtgg cgccccgcca tcgctccttg gcagcctatg agcgcgagct cattggtctc 3120 gttctcgccg tccgccactg gcggccatac ttgtgggggc gccgcttcta cgtcaagacg 3180 gaccactaca gcctaaaata cctcctcgac cagcgcctcg ccacgattcc ccagcaccac 3240 tgggtgggca agctgctggg atttgatttc accgtggagt acaagtccgg cgcgacgaac 3300 acggtggctg acgccctgtc ccgccgggac accgaggagg cttccctgag cacgatcatg 3360 gcggtctcgg gaccccgctt cgacttcatc gaccgcctcc gccaagctca agccagggac 3420 ccggctctgg tggcgatcca cgacgaaatc gtcgctggca cacgggcggc gccgtgggcg 3480 atcacggacg gcctcatcac ctacgacggc cgcctctaca taccgccaac atctccgctg 3540 ttgccagaga tcgtggcagc ggtccacgac gatgggcatg aaggggtcca gcgcacacta 3600 catcgcctcc accgcgattt ccattttcca aacatgcgtc gatgtgtgca ggacttcgtt 3660 cgggagtgca tcacgtgcca gagatataag acggagcacc tccaccccgc cggactactg 3720 ctgccgctgc ccgttcccac cgtcgtctgg gctgacatcg ggctcgactt cgtggaggcg 3780 ctgcccaggg taaacgggaa gtcggtgatc ctctccgtcg tcgaccgctt cagcaaatat 3840 tgccacttca tcccgctggc gcacccgtac actgccgaga ccgtggcgta ggcgttcttc 3900 aacgacatcg tgcgcctcca tggtatgccg cagtccatgg tctcggaccg tgacccggtg 3960 ttcacctcgc tgttttggcg cgagttgatg aggctgatgg gcgccaagtt gcacatgacg 4020 tccgccttcc accctcaagc agacggccag acggaatcgg caaaccgcgt catcgtcatg 4080 tacttacggt gtttcaccgg cgaccgcccc cggcagtggc tccggtggct tccctgggcc 4140 gagtacgtct acaacacggc gtaccagact tcactccggg agactccgtt ccgcgtcgtc 4200 tacggccgcg acccacccac cctccgttca tacgagccgg gcgaaacccg ggtggctgcc 4260 gtggcacgtg acatggagga acgagaagcc ttcctcgccg acgtccgata tcgcctggag 4320 caggcgcagt tggtgcacaa gcgccactat gaccgtcagc atcgccacgt ttcgtaccag 4380 gtgggtgatt gggcgttgct gcgtcttcgc cagcgcacca tgtcttcact gccacaagct 4440 acctccggca agctcaagcc gcgcttcatc gggccgtacc tcgtcacgga gttgatcaat 4500 gacgtcgccg tccggttggc tcttcctccc caggcgcgca tccacgacgt tttccatatc 4560 agcgttctca agaagttcgt cggcgtccct ccagcagcgc tgccagagct gccccccatc 4620 caccacggcg tggtcacgcc ggagccggct cgcgtggaac gggcccatct agcgcgcggc 4680 gttcgtcaac ttctcgtgca ctggcgtggc gaaccggccg aatcagctac ttgggaagac 4740 ctcgacgcct tccgcgagca gtatcctcag ttccagctcg aggacgagct gattcgcgag 4800 gaggggagag atgtcatgtg gggcacggcc tatacacggc gtcgccgggc gcgagatgtg 4860 cggagagctg cggagcgagc cgcagcgcgt gtcgcggcgc agagcgcgat caccgtgacc 4920 gtggatggca aggacgggct cagtggctag gatcggagta gccttgattc taggagggtt 4980 tgtttccaag ttgttagcgt ttatttccaa gttagttagc cggagggcta tatactcttg 5040 taccgaaata tttgagagga aagcatgaaa gttatcgtct aatctccctc ttattctgtt 5100 aagccactag ctgaggggta taacctcgca ggtgaggact ggagcgcgac tacgagttac 5160 gtagtcacgg cccgccgtcg ttgagcgccc aggcgcttga ca 5202 // ID TWIF repbase; DNA; ORY; 586 BP. XX AC . XX DT 13-SEP-2002 (Rel. 1, Created) DT 13-SEP-2002 (Rel. 1, Last updated, Version 1) XX DE Rice putative hAT-like non-autonomous DNA transposon TWIF. XX KW HAT superfamily; DNA transposon; non-autonomous; KW target site duplication; TWIF. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-586 RA Jiang N. and Wessler R.S.; RT "TWIF: a putative hAT-like non-autonomous DNA transposon from RT Oryza sativa."; RL Repbase Reports 2(8), 58-58 (2002). XX DR [1] (Consensus) XX CC 9bp target site duplications. Insertion in SZ-24LTR. XX SQ Sequence 586 BP; 76 A; 207 C; 199 G; 104 T; 0 other; taggtgtcca aacgggcggc acggcccggc ccggcacggg cacgggtccg gcacggcccg 60 tttcggcacg gcccgttagg cacggctgat gaaacgggcc gtgccgtgcc ggcccacgtg 120 ccgagccgcc ggcccaagca cggcccgtgg atggccgggc cgtgccgtgc cggcacggca 180 cgcctgcggc ccacgggccg ttcggggcga aatttgagat tttttggaat tttttcgaaa 240 tttttatgaa ttttttagcc tcccaacggt tattttcaaa tttgaacggt caaatagccg 300 ttagtgtgcc acgtggcgcc ttcccattcg accgccgccc gcccacgtgg cgctttcggc 360 ctgacgggcc gccggcgaaa cgggccgtgc cgtgccgcgg gccgtgccgc tacagtagcc 420 gtgccgtgcc ggcccgcggg ctcggccagc ggcccaagca cggcacggct actcgggccg 480 tgccggcacg gcccgttact gtagcaggcc gtgccgggcc gtgcctgcta caggttcggc 540 cgtgccccgg gccgcccgtt tggcccggcc cgtttggcca cctcta 586 // ID p-SINE1_OS repbase; DNA; ORY; 155 BP. XX AC . XX DT 17-NOV-2004 (Rel. 9.1, Created) DT 17-NOV-2004 (Rel. 9.1, Last updated, Version 1) XX DE Rice SINE p-SINE1 - a consensus. XX KW SINE; Non-LTR Retrotransposon; Transposable Element; SINE element; KW p-SINE1_OS; waxy gene. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RA Prathepha P.; RT "Molecular characterization of a retrotransposon that insert to RT the intron 10 of the rice Waxy gene."; RL Unpublished. XX RN [2] RP 1-155 RA Gentles A. and Jurka J.; RT "Consensus of p-SINE1 from rice."; RL Direct Submission to Repbase Update (OCT-2004). XX DR [2] (Consensus) XX CC Rice SINE element located in intron 10 of the waxy gene. XX SQ Sequence 155 BP; 53 A; 29 C; 36 G; 37 T; 0 other; aattcagtgg caaaaaaaaa actcgaatat tagggaagga cctaatatca aataattaga 60 aggggtgagg ctttgaaccc agatcgtcta gtccaccacc ttgtggagtt agccggaaga 120 cctctgagca tttctcaatt cagggcaaat gatgt 155 // ID SZ-37 repbase; DNA; ORY; 11996 BP. XX AC . XX DT 16-AUG-2004 (Rel. 9.07, Created) DT 16-AUG-2004 (Rel. 9.07, Last updated, Version 2) XX DE Rice retrotransposon SZ-37, incomplete sequence. XX KW LTR Retrotransposon; Transposable Element; SZ-37. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-11996 RA Jiang N. and Wessler R.S.; RT "SZ-37: a retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 93-93 (2002). XX DR [1] (Consensus) XX CC Incomplete sequence. XX SQ Sequence 11996 BP; 3089 A; 2558 C; 2884 G; 3465 T; 0 other; gcatctaggc ccctggtgtt aattttggta attaatgaca agtgctaatt gtggactaac 60 cgttgtcttt gagctataca ttttaagtta ggtccacgtc atatgtgcgc atggatgatt 120 atcgatggat taaaattgac ggcgcaaagc agagggaaag aagacggtaa aactagcgct 180 ttaatttaga attaatcgag gtgtagggcg atcaaatttg ctagtttatt tttagtttcg 240 ccgtactatt aagaggggta atgacctagc aaagagatga ttttaattgc cacactaggt 300 cattgcattt tcacttgtgc tcacattttc atcacacaca caaaaatcac tttgcacttt 360 cactgggttc ggcctgacca gggacggtca gaccggccac atagtggcgg tctgaccagc 420 gtgccctggc cagtctgacc ggccgcaata aggcggtctg accggcggca catgcccggt 480 cagaccggcc ccctggaggc cgagatggtg ctgctcgagg tggctgatac agagccgacg 540 gagccgtagt cggtcagacc gagccgatgg cggtctgacc gagccgaggc cggtctgacc 600 gcccactcaa cgccggtctg accggcaagg ccgatggagc cctctgacag cacttcaact 660 gctagttttc tagccattgc agagtagcac ggtctgaccg gccacatatc tccggtcaga 720 ccggcagagc acaaagttgg aggatttcgc ccccaacggc tagttttggt gggtgagagt 780 ataaatactc ccccaccagc agcaagggga ctctcttggc acccaattca attgcataca 840 ccccttgcac ctctctcaca ctcacttgag ctttgtgttc atccatctag tgcgttagag 900 ggttgattag ccaagagtca agtgcatttg cttccattgt agagctagtg tggcacttga 960 tcatctccac accgggtcat tgcttgttac tcttggaggt tgccgcctcc tagacggctt 1020 gtggagaagt tgccggtgac ctctccgaga agattgtgga ggaggcccga tgccggttta 1080 tgagtggttt ggagttcacc accttcggag tgaaggaaga actaccctag tgatcgaggc 1140 ttgggtagtt ctctccgtgg gccggctccc gccttgccca ccccttgacg aagggggcgt 1200 gcggtggctt cgtggttgag tggtggagtt gggctcgcct caacggggag taggaaaccg 1260 gcgagtttcc gaacctcggt gaaaaatctc gtctccttgt ctcattttat tgtcgcattt 1320 acatttgtgc aatttacatt tctagatgca aacttgagat catatcaccc taggattgct 1380 aaacattgac ataggagtgt gatttacttt cctagagata taattgagcc actatcaccc 1440 taggtttgca aaacataact taggttctta gttagagttg accctcacca agcctagcaa 1500 cttagattag ttttgattag gtgtcattta gttttatatt gcctattcac cccccctcta 1560 gtcgacatct cgatcctaca agtggtatca gagcttggtc tctcttgatt gggcttcacc 1620 gcctagagag aagatgtcga acgaggtgaa ccatgtaggg aaggctccca tgtttaatgg 1680 cacaaactat accacttgga aaattaaaat gtctactcac ctcaaagcta tgagcttcca 1740 tatttggagt attgtggatg taggctttgc tatcaccggc acgcccttga cggagattga 1800 tcaccgcaac ctctaactca atgcccaagc catgaatgct ttgttcaact ctttgatcca 1860 agagtagttt gatagagtga gcaaccttga gaccgcatat gagatttgga acaagttggt 1920 ggaaatccat gagggcacaa gtgagtacaa ggatgccaag cttcacttcc tcaagatcca 1980 atatgagaca ttctccatgt tgcctcatga gtgtgaatga catgtatggg aggctcaatg 2040 tcattgtgga tgatctcaag gggcttgggg caaactacac cgatcttgag gttgcccaaa 2100 agatgcttag ggctctaccg gagaagtatg agacccttgt caccatgctc atcaactccg 2160 acatgtcaag gatgacaccg gcaagcctct tggggaagat caacaccaat gacatgtaca 2220 agttgaagaa gaaggagatg gaggaaacct caccttccaa gaagtgcatt gctcgccaag 2280 ccgaagttga agacaagggc aatggcaagg tgaatgaagc caatgagaac ttggaggaag 2340 agattgccct tcttgctaga aggttcaatg atctcttggg aaggagaaag gagagaggaa 2400 ggggctccaa ctccaatagg agaagaaata gaagacccaa caagactctc tccaacttga 2460 ggtgctttga gtgtggtgag aagggacact ttgctttaaa gtgcccttcc aaggatgatg 2520 atggagacaa gtcatccaag aagaagagtg gaggctacaa gctcatgaaa aagctcaaga 2580 agtaaggcaa gaagattgag gccttcatcg gggaatggga ctcaaatgag gagagctccg 2640 cctcatccgg gtccgaggaa gaagatggtg atgatacaag ctccaagaag aagaagatgg 2700 ccgttgttgc catcaaggag gctccatcac tcttcgctcc actttgtctc atggcaaagg 2760 gctcttctaa ggtaacatct cttagtgata gtgagagtga tgatgattgt gatgatgttt 2820 cctatgatga gcttgtgagt atgtttgagg agctctatgc ttatagtgag aaggagattg 2880 tcaagttcaa ggccctaaag aaggatcatg cttctttgga ggtcttgtat gaggagctaa 2940 agacttctca tgagagactc accatttctc atgagaagct taaggaagct caagacaacc 3000 tcatttccac tactcaacat ggagctctca ttgatgttgg catatcttgt gatttgcttg 3060 gtgatagtgc tacttgccat attgctcatg ttgcatcatc tagcatttct acctcttgtg 3120 atgatcttgt ggatatgtct agctctagct ctacctcttg tgtttctatt tgtgatgcct 3180 cacttgttgt tgagaacaat gagcttaaag agcaagtggc taagctcaac aagagcttgg 3240 agaggtgctt caaggataag aacactcttg acaagatttt gagtgagcaa cggtgcatcc 3300 ttaacaagga gggacttgga ttcattccaa agaagggtaa gaaaccttct cactgtgcca 3360 ctcgttttgt caagagcaat ggtaagtatt gctccaagtg tcgtgaggtt gggcatttgg 3420 tgaatgattg tccttgtggt aaacctccta agacatgcat gtttgattct cattatatgc 3480 ttaggaaggc tcatgatggt agcattgttg ctagatatgt gggttcccct atactcggtg 3540 gtaaaaagaa tgccatttgg gtgcccaaag ctttggtctc taacctccaa ggacccaaac 3600 aagtttgggt acctaaaaga gcttgatctt cttttgtagg tgaactaccg caccggtggg 3660 agccattggg tgtttgatag tggatgcact caacacatga ccggtgatag ggctatgttc 3720 accacatttg aagtaggagg gaataaacaa gagaaagtga catttggaga caatagcaaa 3780 ggaaaggtaa ttgggttagg taaaattgct atctccaatg atttgtcaat tgataatgtc 3840 tctcttgtta aatctctaaa tttcaatttg ctttcggttg ctcgaatttg tgatcttggc 3900 ttgtcatgtg ctttcttacc gcaagaagtt attgtttcta gccttcttga caagtcttgt 3960 gtgttcaaag gttttagata tggaaatctt tatttggttg atttcaattc tagtgaagca 4020 aatttgaaaa cttgtttagt tgcaaaaact tctttgggtt ggctttggca tagaaggcta 4080 gcccatgttg gtatgaatca attgagcaaa ctttcaaaac gtgatctagt tgtggactta 4140 aaagatgtga agtttgagaa agataagctt tgtagtgctt gtcaagccgg caagcaagtt 4200 gcatgttctc atcctactca gagtatcatg tccacatcta gaccattgga gctcttgcat 4260 atggatttgt ttggcccaac aacctataag agcattggtg gtaatagtca ttgtcttgtg 4320 attgttgatg attattctcg ctatacttgg gtgttctttt tgcatgataa gtctattgtt 4380 gccgagcttt tcaaaaagtt tgcaaaaagg gcccaaaatg aatttagttg cactcttgtg 4440 aaaattagaa gtgacaatgg ttccgagttt aagaatacca atatcgagga ctattgtgat 4500 gatcttggta ttaaacacga actttccgct acctactcac ctcaacaaaa tggtgtagtg 4560 gagaggaaaa atcgtatatt gattgagatg gcaaggacta tgcttgatga atatagtgtt 4620 tccgattcct tttgggcgga agccataaac accgcttgcc atacaaccaa taggctttat 4680 ttacatcgtc tcttgaaaaa gacttcctat gagctaattg ttgggaggaa gcctaatgtt 4740 gcctattttt gagtttttgg ttgcaagtgt tatatttacc gaaagggtgt tagactaacc 4800 aaatttgaaa atcggtgtga tgaagggttt cttctaggtt atgcctcaaa tagcaaggca 4860 taccaggtct acaacaagaa taaaggtatt gtggaagaaa ccgccgatgt tcaatttgac 4920 gagactaatg gctcccaaga ggggcacgag aatttggatg atgtaggtga tgaaggcttg 4980 atgagagcta tgaagaacat gtcaattgga gatgtcaagc ctattgaagt ggaagacaag 5040 ccatccacct ccactcaaga taagtcatct acttccgcta cgccaagtca agctcaagtt 5100 gaagtggagg aggagaaggc acaagatcca cctattccac caagaataca caccgctctt 5160 tccaaggatc acccaattga ccaagtgttg ggtgacatta gtaagggtgt tcaaactcga 5220 tctcgtgtcg cttcgatttg tgaacattac tcgtttgttt cttgtcttga gccaaaacat 5280 gtagatgaag ctctttgtga tcttgattgg atgaatgcta tgcatgaaga gctcaacaac 5340 tttgcaagaa acaaggtttg gactttggtt gaaagaccta gagaccacaa tgtcataggg 5400 acaaagtggg tctttaggaa caaacaagat gagaacgggt tggtggtaag aaacaaggca 5460 aggttggtgg cacaaggttt cacacaagtt gaaggtttgg actttggtga aacttttgcc 5520 cccgtagcaa gacttaaggc tattctcatc cttcttgcat ttgcatcatg ttttgacata 5580 aaactatttc aaatggatgt gaaaagtgct tttctaaatg gtgaaattgc cgaacttgtc 5640 tttgttgaac aacctcccag tttttaagat cctaaaaatc ctaaccatgt ttacaaactc 5700 tcaaaagctc tttatggttt aaaacaagct cctagggctt ggtatgaaag attgagagat 5760 tttcttttgt caaaagattt caaaattgga aaagttgaca ccactctttt cacaaaaatc 5820 attggtgatg atttctttgt gtgccaaatt tatgttgatg acatcatatt cggttctact 5880 aatgaagtat tttgcaagga atttggtgat atgatgtcta gggaatttga tatgtccatg 5940 attggagagt tgagcttctt ccttggactt caaatcaagc aactccagga tgggacgttc 6000 gtgagccaaa ccaagtacat taaggatcta ctcaagaggt ttggcttgga ggatgcgaaa 6060 cccatcaaga cacatatggc aaccaacggg catctcgacc ttgatgaggg aggtaaacca 6120 gtagatttaa agctttatcg ttctatgatt gttagcttgc tttaccttac cgcatctagg 6180 ccagatatca tgtttagtgt ttgcatgtgt gcacggtttc aagccgctcc taaggagtgt 6240 cacttagtgg ccgtgaaaag gattctaaga tatttaaagc attcctctac tattggcttg 6300 tggtacccaa aaggtgctaa atttaagctt gttggctatt ccgattcgga ttatgccggt 6360 tgcaaagtgg atagaaagag cacatcctgt agtttccaaa tgcttggtag atcccttgtg 6420 tcatggtcat ccaagaaaca aaactccgta gccctctcta ccgccgaggc ggaatatgtt 6480 tcggcgggta gttgttgtgc ccagttgctt tggatgaaac aaatcttgtt ggattatggc 6540 atatccttca ccaaaacccc actcctatgt gacaatgata gtgccataaa gatagccaat 6600 aacccggtcc aacattctag aaccaagcat attgacatac gccatcactt cctaagagac 6660 catgttgcca agtgtgacat agtcattagc cacataagaa ccaaggatca actagctgac 6720 atctttacca agcctcttga tgaaacccgc ttttgcaagt tgaggaatga gttaattgtc 6780 atagacttct ctaatgtggc ttgagatggt gcaccatggt tgcttctttt gcatattgta 6840 tatttgctcc tatttgctct tatgctttgg atttattgcc atttggttct tcattgcgaa 6900 aatggagcat gtcacattaa gggggagttt tgcactcttg catgtgctcc acttcctttt 6960 atatgtgagc aaatcaacta aaagtcaaca taagtcaaaa cttttgcaaa atcaatgtaa 7020 tttgaaaact atctcttgga aaatgtttca aaaggttccc tatatgtttt ccaaccctca 7080 ctttgcaaga aaaatgtttt ttgaatgaaa atgccatttt ggccctcttt tgaagaaact 7140 agaatcttgt tttttggcca aaatgagatt aaaccccaaa atgagattga gaaggaattt 7200 gaaaaaagtt tcaaaacaaa gttggtagag aagaagtttt gaaatgtttt tggtgttcaa 7260 atcatattca aaaaccaaat atttcaaaag ttgtttgaaa atcaaattcg cccaaaaacc 7320 cctatagacc ataaatggtc acctcctagc actcaaatga gttttgttgc aaatcttcat 7380 aaatttcaaa tattatgaat ggttggcaat atttcaactc acacatttca aaattgctcc 7440 aaaaatcaat tttttgttga attttattgt gcggggtagc cgaactgtgc aagggctgtg 7500 cacagtcggc taggggctag gcggtctgac cggcgctata tgcgcggtct gaccggccta 7560 gtagcggcgg tctgaacggc ctctagggcc cagtctgacc agccgcaccc cggcggtctg 7620 actggccgca tatagccggt ttgaccggcc gcaccccggc ggtctaaccg gccgcatata 7680 gccggtctga ccggcctggg atggtgggcc caggactttg tcctttcttc ctcctcctcc 7740 tcctacgcga cccctcctca tcccatctca tctcttcact tctccaactc gaaatttctt 7800 ctcctctctc ctctcccaaa ccctagccac ctccctccac caaatccatc cagttcaacc 7860 gtcaaaatca ctccggttac accgtaagtg aatctcctcc tcttcctctc tctattccat 7920 ggattgattt gagattttat tgagtttgtg atccatggca tggaacccta ggtgaaggaa 7980 gaggtgttct tcgatttgca ccaatagagg gtagtttctt ggtgtgattc aactccttca 8040 accagtaaat ctctctccct cttgtgcatt gctctcaaat cgatctattt caatctctag 8100 ggttaagggt agtttccccc attactttaa tcttgatgaa atagacctac accttgatgt 8160 tcatgtttca atcttgtgca acactgtcct agcaattttt agaatcattt gtgtggatta 8220 tggaaggatt cggtggtgct actgtcagtg gcagtctgac cggccttgag ccgtcggtct 8280 gaccggccgt cggccgttgg tttgaccgac ttcaggcatg cggtctgacc ggccgtggct 8340 ctcggtctga cctcccctga caggccgtac tcccccttcc tcccacttca ctatgtggtt 8400 tctaaaatta ttacttatat atcctttgct cctgtttttc agtgatgcct ccccgcactc 8460 gtcatggtcg tcgtgcgcca actccggatc ctgtgagtga gcctgaggaa tcgagtggag 8520 aggattacgc tcaaagagat gaagaggttg aggccaatgt tgagggggct agtgaggagg 8580 aaagtggaga tgatgacagt ggaagtggag agtatgagga tgaagaaagt gatgatatgc 8640 acattgatcc atccatccag tttgttgtga acatgaggaa tccatcacag tataccatct 8700 tgaggcacca tgatcagttt ttgaggcctc gggacacccc ggatccccgt tttcacaccg 8760 ctttccagaa gagtgtgtat gagcaagtct atgcagggaa agcttttgca gagcataagt 8820 ggatctcttg gagagacatc aatgagactc tagagtttga gggcttgcag gatctcttca 8880 ggactgttgg cattgaccgg attatgactc ttaagcaaga ttacaatgaa gatttgatcc 8940 ggcagtttta tgctacagtg tgggtggctg gggactatag tgagatgaag tggatgtccg 9000 acaccctcta gtgttctatc tctaggaggc aattccggcg gctcctcaat attcgcttgg 9060 actttggaga tgacttgcat gaggagcaca cccataatcc gctctccata gactacctct 9120 ctcagtttta tgaagatgga gcgcggtaca catatgggaa ggttgccggc ttgaggacca 9180 tcccgagtgt ggttaacaag attgtgagag ctaccatcct ccctcgcctg ggtaacaatg 9240 atgacattag gggggtggct tggcacgtca tcgatgcaat cattcagggc cgacagttcg 9300 acattgtgac tctcatgctg caagagattg ccatctccaa ggggaccttc actcagggaa 9360 tctattatgc cccttacatc atgaggttga ttcaagacaa gcttggggct gctaggcaga 9420 atttgaagaa gcacaagcag tacaagcccc gccttcagct tggagctccc tgtgctccta 9480 gggtggcgcc ctcctctcat cctggagcta gctcaagctc agcacctcct cctcctcatg 9540 ggtatgatcc aaatgccttc tttcaccctc agtatgccta ttttggaatg caacccaacg 9600 agtacttcaa cccggtactt ggggctatta ataccctaag tgaaagcatt caacgcttgt 9660 ttaccgggca tgaagctttg catgaggatg ttcgtggctt gcgcacagat gttggagact 9720 tgaatgcttc cgtggggaga ttgcacactc gagtgggtat attggattct cgagtccaaa 9780 tgttggagag ctcccaagct tctcatcgtc gtcgtcgtga tgcttctcat ccttccactt 9840 cggcgtgtcc tccttctcct ccacaagagt gaagaccttt ttggtgcttg atgccaaaag 9900 ggggagaaaa gtgtgtttta tgttgggttg ggactagtag tagtgaggtt agtcacctca 9960 tatttaatag gttaaggagg tttgggctat attttgtgtg ggtatgggct attactctat 10020 cttgtgtgtt atttgtcatt ttgttaaact ctctatgtca tttggaccct ttgtggtctt 10080 gtaatagcct atgttttatt tgtgagccct tgatgtggtc ttaatgtgaa cttgtgctat 10140 gatgcatggt tggagttaca ttgatatact tgtgaccatc ttatgcattc ggttgattca 10200 tatgtgaagt tcacattata atttgcatat gtgttgtgct atgttgaaat gtgaaattga 10260 aatgtgcatt ggctccatat ttgctatttg taattgttat gcatatgttt agggggagct 10320 tttgcttgtc aatgcaatat atgtccatct gctctatgtt tgattatata tatttgtggt 10380 gtttgtcatc aattaccaaa aagggggaga ttgaagcatc taggcccctg gtgttaattt 10440 tggtaattaa tcacaagcgc taattgtgga ctaaccgttg tctttgaact atacatttta 10500 agttaggtcc acatcatatg tgcacatgga tgattatcga tggattaaaa ttgacggcgc 10560 aaagcaaagg gaaagaagac ggtaaaacta gcgctttaat ttagaattaa tcgaggtgta 10620 gggcgatcaa atttgctagt ttatttttag tttcgccgta ctattaagag gggtaatgac 10680 ctagcaaaga gatgatttta attgccacat taggtcattg cattttcact tgtgctcaca 10740 ttttcatcac acacacgaaa atcactttgc actttcactg ggtttggcct gaccagggat 10800 ggtcagaccg tccacatagc ggcggtctga ccggcgtgcc ctggccggtc tgaccggcgc 10860 ataaggccgg tctgaccggc ggcacatgcc cggtcagacc ggccccctgg aggccgagat 10920 ggtgctgctc gggatggccg atacagagcc gacggagccg tagtcagtca gaccgagccg 10980 atggcggtct aaccgagccg aggccggtct gaccgcccac tcaacgccgg tctgaccggc 11040 caggccgatg gggccctcta acaacacttc aacggctagt tttctagccg ttgcagagta 11100 gcacggtctg accggccaca tacctccggt cagaccggca gagcacaaag ttgggggatt 11160 tcgcccccaa cggctagttt tggtgggtgg gagtataaat actcccccac cagcagcaag 11220 gggactctct tggcactcaa tttaattgca tacacccctt gcacctctct cacactcact 11280 tgagctttgt gttcatccat ctagtgtgtt agagggttga ttagacaaga gtcaagtgca 11340 tttgcttcca ttgtagagct agtgtggcac ttgatcatct ccacgccggg tcattacttg 11400 ttactcttgg aggttgccgc ctcctagtcg gcttgtggag aagttgcccg gtgacctctc 11460 cgagaagatt gtggaggagg cccggtgccg gtttgtgagt ggtttggagt tcactatctt 11520 cggagtgaag gaagaactac cctagtgatc gaggcttggg tagtcctctc tgtgggccgg 11580 ctctcgcctt gcccacccct tgacgaaggg ggcgtgcggt ggcttcgtgg ttgagcggtg 11640 gagttgggct cgcctcaacg gggagtagga aaccggcgag tttccgaacc tcggtgaaaa 11700 atctcttgtt tccttgtctc atttgattgt cgcatttaca tttgtgcaat ttacatttct 11760 agagacaaac ttgagatcat atcaccctag gattgctaaa cattgacata ggagtgtgat 11820 ttactttcct agagatataa ttgagccact atcaccctag gtttgcaaaa cataacttag 11880 ttgcttagtt agagttgacc ctcaccaagc ctagcaactt aggttagttt tgattaggtg 11940 tcatttagtt ttaaatcgcc tattcacccc cctctagtcg acatctcgat cctaca 11996 // ID SZ-50 repbase; DNA; ORY; 11690 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE Rice gypsy-type retrotransposon SZ-50. XX KW LTR retrotransposon; GYPSY superfamily; RIRE2; SZ-7; SZ-50. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-11690 RA Jiang N. and Wessler R.S.; RT "SZ-50: a gypsy-type retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 104-104 (2002). XX DR [1] (Consensus) XX CC SZ-50 is a gypsy-type retrotransposon. It has 530bp LTRs. CC Internal region similar to RIRE2 and SZ-7. XX SQ Sequence 11690 BP; 3057 A; 3253 C; 3124 G; 2256 T; 0 other; tgttggcgga tggcatgagt cccttcgacc gaatctgccg aaacccatgg cgaagaccac 60 gagccaagga tgatgcgagg cgaagggtcg cacgagtgca cgccgaagaa ggacgacttc 120 gccatgccga agaaggacga cttcgccagg accggttcgc cccggcatcc agcccagaga 180 aggacggctt cgccaggtcc agttcgcccc cgcgagggcc gaagtagcct tctcggccca 240 ccaagcttag agaccatagg gccggcgatc gcccgatggc ccatcaagag cccatgagcc 300 cccctttacg ttatgtaacc ctgtaaacgt ccctttcata agggcaacta tgtaaattcc 360 tcagtacaac ctagacccta gaagtgagaa tctgtaacgg ggctataaat agccccctag 420 ggccatgtaa tacaggggag aaaattcaag aaatcaatat acttcgtttc tttccaacca 480 ctgttaagta accacgtctt tcgacgtatg cggttgtcgt ttcgataaca gctggcgccg 540 accgtgggga cctccgagcg aaaccactga gagcgaatgc caccgaagaa ggtcgtgaag 600 gagaaggtta caaggcgaaa ggaaagcgac gccggggcgg acatggccgc cgaagaagga 660 gcggaacctt cggcatcaat cgccgaagtg ggaggagccc cgtccgcttc ggcaccggca 720 ccgtctgctt cggcgctgat cacagcattg ctgccttcgg cccctgccac ctctgagcag 780 gcgccaaggg tggatgaagt ggcgaaggcg gctgcagcgg caagggcgct tcagaccagg 840 gcggagatcc tttcggcagg acagctgctg gtgccccctg ccgctccgtc gcagccaaca 900 gtggcccaag ccgcactccc tgccgtgcaa gttcaagtca actccgaccc tgaaacacaa 960 gccgaagccg atatggaaac tattaggcag aacatggcac gactccaaga catgcttcgc 1020 caaatgcaag aacagcaaca agcgtacgag gcggcgaggc ggtccagggt cccttcggca 1080 ccaatcctcc aatattcggc agggtatgtc ccgcctcaag tctgtccaca agtgcagtcc 1140 cagcccgttc cgccgcaagt ctcacaggca tcggtgcact tcgccgggca gccggcagcc 1200 gcagcagtgc accaggcccc ctatggacaa gctcagcaga tcgcggccca agtgtagcct 1260 caaccacttg gccaggtgtc gcaaaccgta gcggaagggg cttcggctct gcaggcgcaa 1320 ttccaagctt tccttcagca actcaatcag ccccacaaca tttcgagtac agctccctcg 1380 actcgtccag aggggagtac aggtcaaggt gcacctagtt ggttgccgcc gaaccagccg 1440 aatctggggg cttcgccatg gagtcagaca cctcagtacg acttcgtcaa tgccgcccag 1500 gcgcaaactg ttcggccgca aggaccgaca ccaggctttg gaacaagcca agcaccagcc 1560 caagtcgcca tgacatggtc gcagccagtt ttcgacccat ccatggcgac ccagcaagta 1620 ttaccaatcg caaccgggca gccgagcacc atggctcaaa ctcacgcgca agccgtaatt 1680 tcacctttcg ccacgccgta cccgcagcaa ggtgcagcaa acagagcggg gggcgagaag 1740 gggctgccgc tgagtggggg aattaagaac cgcccaattc caccccagtt caaattccca 1800 cccgtcccac gctactcggg cgaaactgac ccgaaggagt tcctatccat ctatgagtcc 1860 gcgatcgagg cggctcatgg cgacgaaaat accaaggcaa aggtaattca cctcgctctg 1920 gacggcatcg cccgttcttg gtatttcaat ctgccagcca atagcattta ctcatgggag 1980 caattgcgcg atgtttttgt tcttaacttt cgaggcactt atgaggagcc gaagacgcag 2040 cagcatctgc tcggcattcg ccaaaggccg ggagaatcga taagagaata catgcgtcgc 2100 ttctcgcaag cccggtgtca agttcaagac ataactgagg cgttagtcat aaatgctgct 2160 tcggccggtt tgctcgaagg cgaactcaca aggaaaatcg ccaataagga accacaaaca 2220 cttgagcatt tgcttcgcat cattgacggt tttgcaaggg gtgaagagga ttccaagcga 2280 cggcaagcca tacaagctga gtacgataaa gcttctattg ccgccgccca agctcaagca 2340 caagttcaag ttgccgaacc acctcccctc gcggttcgtc agcctcaaac ggcgatccaa 2400 gggcagccgc caagacaagg tcaagctccc ataacctgga aaaagttcag gaccgaccgc 2460 gcgggcaagg ctgtgatggc cgtcgaagaa gtgcaagccc tccgcaagga gttcgacgcc 2520 cagcaagcaa gcaaccatca gccggtccgt aagaaggtcc gaaaagacct ttactgcgct 2580 ttccatggac gctcttcgca taccacagag caatgccgaa acatcaggca acgtggcaac 2640 acgcaagata ctagaccaca gcaaggagca accgtcgaag cacctcgtga agcagcccaa 2700 gaacaacccc cggtcgaaca acgtcaagat gcacagcgaa gagtaatcca agtgattacg 2760 agggccgacc cgctcggcca tttgtccaaa aggcagaaaa agatgcagat ccgagcggtc 2820 cacagcatca cttcgacggg ggagggggcg ccgcagtata tgaaccagcc aatttctttc 2880 gggccagaag acgccgaagg agtcatgttc ccacatcaag atccactggt aatatcagct 2940 gagatagccg gctttgaagt ccggcgaatc ctgttcgacg gagggagttc ggctgatgtc 3000 atcttcgccg aggcgtatgc taagatgggg ttgcccaccc aggctcttac accagcacca 3060 acgtcactcc gggggttcgg cggagaggca gttcaagttc tcggccaggc acttctgctg 3120 atagctttcg gctcgggaga aaacagacgc gaagagcaag tactgttcga tgtcgtcgac 3180 atcccgtaca actacaatgc catcctcggc cgtgcgaccc tgaacaagtt cgaagccatt 3240 tcccaccaca actatctcaa actcaagatg cccggcccag cgggagtgat agtggtcaag 3300 gggcttcagc cttcgcctgc gtcgaaaggc gatcaagccg tagtcaacag ggccatgcac 3360 aatgtcgaag ccgaactcca cagccggcca aaacacgcgc caaaacccac acctcacggc 3420 aagatagtaa aagtgcaggt tgacgatgcc gaccccacaa agctcgtatc gctgggagac 3480 ggcatgggca aacaagaagc tgagagcatc ctagcggtgc taaagaagaa cattgatatc 3540 ttcgcctggg gccctgacga agtggggggg gggggtttcg gcagacctca tcatgtatca 3600 cctagcagtc aagccggatg ccaagccaag agagcagaaa ctgcgtaaga tgtccgcaga 3660 tcgtcaagag gcggcgaaag ccgaagtcca aaagctgctc aaggctgggg tcattcagga 3720 gatcgtccac ccagaatggt tggcgaatcc agtactggtg cggaagtcaa acggcaaatg 3780 gcgaatgtgt gtagacttca cggacctgaa taaggcatgt ccaaaagacg atttcccttt 3840 gccgcggatt gatcagctcg tggattcgac agccggctgc gaactcatga gtttcctgga 3900 cgcatattcc ggctatcatc agatccatat gaacccaccg gacatcccga aaactgcttt 3960 tatcaccccg tttggcactt tctgtcacct caggatgcct ttcggcttga ggaatgctgg 4020 ggcaaccttc gccagattgg tgtacaaggt cctttgtaat cagttagggc gaaatgtgga 4080 agcttatgtt gacgacattg tcgtaaaaag ccgtaaggtt ttcgatcatg cgtccgatct 4140 gcaggagact tttgacaact tgcgcacagc gggcataaaa ttgaatcctg agaagtgcgt 4200 cttcggagtt cgcgcgggca agttgttggg attcctggtt tctgaaagag gaatcgaggc 4260 gaacccagaa aaaatcgatg ccattcggca aatgaagcct ccatcaagca cacatgatgt 4320 acaaaagctt gcaggccgaa ttgcggcgct tagccgattc ctctcaaaag cggccgaaag 4380 aggtctccca ttcttcaaga ccctccgggg cgcaggaaag ttcagttgga caccagaatg 4440 ccaagcagcg ttcgacgacc taaaacaata cttgcaaagc ccaccagccc tcataagccc 4500 gaatccagga agcgaactgc tgctgtactt agcagcctca ccagcggcag taagcgccgc 4560 ccttgttcaa gaaacagagt tcggccagaa accagtttat tttgtctccg aagcgctgca 4620 agaggcgaag acaagataca tcgagatgga aaagcttgct tacaccttgg tgatggcttc 4680 gcacaagctc aagcactact tccaggccca taaaataatg gtgccttcac agtacccttt 4740 gggcgaaata ctacgaggca aggaaatctt tgggaggctt agtaaatggg cagcagaact 4800 atccccgttt gatttgcatt tcgttgcgcg cactgctgtc aagtctcaag tgctagccga 4860 ctttgtagcc gaatggaccc cagtgtcaac ctctgaaccc gagcccgtcg agcagccctg 4920 gataatgtgc tccgacggtt catggtcgca caagggagca ggcgtcgcgg caattctcat 4980 ttcgccgaac ggtgtaccag ttcggtacgc cgcaaggttg cagtttaaca caaccaacaa 5040 cgcagcagaa tacgaagcca ttcttctagg cctaagaaag gcgaaagcac tgggagttcg 5100 gcgcttgcta attcgaaccg attctaagtt ggtagcaagc catgttgaca agtcctttga 5160 ggcgaaagaa gaaggaatga aaaagtattt ggaggctgtc cgaaccatgg aaaagtactt 5220 caccggcata acagtcgaac acttgcccag aggccagaat caggaagcag acgctctggc 5280 gaaatctgcc gctagtggcg gaccgcattt gccgggcata tttttcgagg tactgcacac 5340 accaagcgtg tctgtggaca gtctggtctt aacaattgac caggtaaaac tgggagaaga 5400 cccaaatgac tggcgaaccc cgtttgttaa atatatcgaa actggctggc ttccggatga 5460 tgaagcagaa gcaaagcgct tgcaaatcag agccacgaag tataagttaa tctcaggcca 5520 actttaccgt tctgggatgc ttcaacctct actccgttgc gtttctttcg ccgaaggtga 5580 gcaaatggcg aaggagatac accaggggct atgtggcgct caccaagctg caagaacggt 5640 ggcctccaag gtgtttagac aaggggttta ctggccaact gtgttgaaag tctgtgcaga 5700 gcagattaag aagtgcgaga gctgccagcg tcatggctga agtcaaaccg cgccccacta 5760 tgacttgcag cccattgcgc caatttggcc cttcgccaga tggggactgg acatcattgg 5820 cccaatccct tcggcacgaa acgggtataa gttcgccatt gtggctgttg aatatttctc 5880 tcggtgggtc gaagccgaac tccttggtgc aattacttcg gcagcagtac agaagttcgt 5940 gtggaaaaac attatctgcc ggttcggagt accaaaggag ttcatcaccg acaacggcaa 6000 gcagttcgac tctgaaaagt tcagacaaat gtgcgaaggg cttaacctgg aaataaaatt 6060 cgcatcggtc gcacacccgc agtccaacgg agcggccgaa cgaacaaatg gcaagatcct 6120 ggaagcacta aagaaaaggc tcgagggggc agcgaaaggc aaatggccag aagagatgct 6180 atctgttctt tgggccctgc gaacgacccc cacaagacca acgaggttta gcccgttcat 6240 gctcctctat ggcgacgagg caatgacccc agcagagcta ggggctaact caccaagggt 6300 ggtgttctct gggggcgaag aaggacgcga ggtgtcgctc gaactattag aaggagtaag 6360 agtcgaagca ctcgagcaca tgcgcaaata tgccgtaaac acttcggcaa cctacaacaa 6420 aaaggttcga ccgacagatc tcttgcccgg tcagctcgtc ctaagaaaaa aggcgaaccc 6480 agtggctgtc ggcaagcttg aatcgaaatg ggaaggcccg tacctcatca agcacaaatc 6540 aaggacgggg tcttttcggc tggcaacatt ggaaggcgag gggctcgacc actcctggaa 6600 tgctgcctcc ctcaagcgct tttatgtcta gaataggtgg cacccaaatc gccaacttgt 6660 aaaaatgtat atagtcatgt aagccattcg gcactatgta cgcctcccgg caaaaaaaaa 6720 aggaaaaaaa aagaggaaaa tgaaaaaaga aaaaaaaact ggatgtaggg ttattatccg 6780 ccatggaggc ccgaaccagt ataaaacctc tgtgtcctct accttctttt ttttattgtg 6840 tgattgataa cttgtggaaa aaccccaagg caaacgcctg atcagcgaaa aagccagggg 6900 ggcgaaacga atcggccgaa gcatcgctcg ccgaacgttg aaaccacaac agcttgtttc 6960 ggaaataact aaccgaacgc cattacattc gatcagcatg aaagtaaaag cgtctatcga 7020 aaacggaaga cgaaagctgg aaaagtcgaa gcctatttcg ctaatgtatg caaaggggcc 7080 gacatgttcc gacccaacga aagcacgcga agtgacaatg cgagaatagc gaaaaggaag 7140 taaagcacac ttttattgat tcaaaaaaaa aagggaggta tcgaggatta caactcaaac 7200 agtgcaatat agatcacaaa taaattacat cttcgccctc gtgtcccctt tctcccctgt 7260 cggctaaaga atgatcgggc gaacaaggtt cgtcgtcgct aatatcatac accactctaa 7320 ggggagaagg gggcgaaacg caaattatgc cataacggcg ccgaaagatc gcttcctgcc 7380 gatcggtctt ctgatgattc cgccaaaagc gaagccatgt cgtccaaacg tcttgaatga 7440 acaagatcat aatcctccag ggttcgctca gggtgactcc gaagccaccc agcaaccttg 7500 aaaaccttat agctgtgtcc atttatcagc atttcacgat acacaggccg aaacgggcat 7560 cgcatcttcg gcaaatcttt taaagccaca aatttctcgt tttggtttcg ccaacttcca 7620 gacgggggtc gaatacacag ttttcggcga ataccctggc agataatgca gaaatggcaa 7680 aaaaccaatc gaatagtgag aagtaggcga aagcataaca aggaccaaca gtaaagggcg 7740 aaaggtaggt ctgttataca tattttaaat gcccaacgac aacttagtct cggttacaat 7800 aaaaaggtta gcggcagcct gccgaatata caacggttcg ccacccctgg cgaaccccaa 7860 aaaaaaacta tgaaaatcta aagaaagggc ggagggcctc acacctctgg gtgatcctgg 7920 gcatcacctc cacccccttc ggcctccacg tactcttctt cgcgaagctc cgccgcctca 7980 gccttcgcca gctgctccaa aaggcgcgcc ttagcggtcg agcggccgtc cctctgctag 8040 aattgttttc gccacgcacg aagtgcgggc gaaatgtctt gtgaactgat ttcccaatcc 8100 cctttcgcgt agttggggaa ctcggcgaca tgctcacagc cgaactgctg taggaggccc 8160 gtggtaaagg ccgcggacac gcgcgcacag cagtcgccgt acgcggtggc acagtccgaa 8220 accgaaccac cagcctgcta ggtccattcg gagaagtcaa aggcagaggc atcttcggaa 8280 gggacacctc gcactttcgc gcccatatcg gtaagagcaa ggcgaagcgt ttggcaagct 8340 gttcgcgcgg actcggtagt tttcaccatc tcccgtgaaa accgccgcga ctccgcagca 8400 gcgcttgcct cggccttgca gacttcctgc cgaagagcct ccatcttcga ctcggtaagg 8460 ttgtagtaat ccacaagcac ggcggagtgg gccttttctt tttgcagttc ggccttcaag 8520 cgttcgactt cggccctagc ttcattccct ttttccagtt ccaactggag ccgcttgttt 8580 tcggctttcg tctccttcag ggtgttagcc aggacctcca tctcaagatt tttgcggcct 8640 atttcgtcat ccttcgcccg aagacggctt ttgaacccgt caaggcgggc tcgcacggtt 8700 cgctctgttg aacagtgagc cgcaaggatc tgggcgcaaa acaagagcgg cgaagagagc 8760 aagtgtcagc aaaagcaaag ataagaacag agaaaaagga ggggaaagac gtacccgaac 8820 cacaagactt tttatagcgg agcacccctc attgaactca ttaagttcgg tgaacaggct 8880 cggggtgccg gcaggcatga ttagattgct caccccttcc acaaaaggaa ggaggtctgc 8940 ccgtgtctcg aagtcgccgg gggcgaagcg gggcaccgca agcgaatact ctgacgcgga 9000 cgtttcgcca gccgctctct ttcccttcgc ctcagtcagc ggcgatgcaa ttggctgacg 9060 aggaggactg ccgaaaactt tcgccgcggc cgtcacgatc ctttccgcgg aggccgaagc 9120 cccagcggca gtgctaccac ccgctccagt gccgccaagt ggaggagcgg gagcggctga 9180 gagatccagg ctgcggccag cgggcgaagt cagagtcccg tcagaggact catcgtcgct 9240 aaaaactcga gcgatatcga caagtccttt ctttttagcc gccttcttga cggggcctcc 9300 cttcgccgcc ttgccagagg agaacgcaac cagagccttc gccacgtcca agtctttttg 9360 gcgaaggggg gagctattcg actccacccc agtctcgtta tggccaggac ttggagtggg 9420 ggtataaccg ggagtttcgg cgcgtccctc ggtcacctcg accgcggcat tttcgaccgc 9480 ggtctccgtc tcttcttcct ccccctctcc ctcttcgccg tcaagttctt cgccatcctt 9540 gtcgtcagcg tcagaatctg atgaaacagg agccctacgc ttcctagggg caagcttaac 9600 ctgaccgcgc ggccgcttcc gcgaaggccc tgcttcgtca ccagccttat ggggattcgc 9660 ccgaggaggc aattcgccgt taaaaacccg gttcgcccga ccagttgcct gccgtgtaag 9720 catttggctg tactcaacga ccgatacgtc gccgatcatc ttacgggctt cggcttcggc 9780 ttggtcaagg gttagcactg caaaggaaag gaaaggagtc aggttaaaag gtcaagcaga 9840 gagagctaaa gcgcgaaagt atatggcgaa aacagcagac ttactgttca ttccctcagg 9900 gaggaccagc ttaggcaagc catcaacctc ttcgctcagg ttaaccgcaa cctgccatga 9960 ctgggagagg ggaaagatgc gaagcatgca gaactcctcc accaggtcgc ggcagctgag 10020 gcgggaacag actttcctta gcagggcgaa ccgggcctcc atagcgccat ccacggcgat 10080 cctgggtttt cgattcggcg caataaccct gcgccgacac cgaagagctt tcgctgaatc 10140 agagccggcc tcgaagggga tggtgtggta aaaccacctc gccatccaat ggcggtccca 10200 cttcgacatg gcagcattcg ctggccaaag gtcggaccgt tcggggcgaa cattgaagtt 10260 cacgctcccg atcaccgtct tcttcgtccc agccggagta atcaccgtct tggagttcac 10320 ggtggcgaag aatatggcgc cgaagagagc agcgctaggt tcgaacccag aagtccgaca 10380 agcccaatcg aaaattgaga tccgaaccag cgtcgatggg ctcaattggg ggagctctac 10440 ctggaagagg cgaaggatct ccggcaatag cacgttgcac ggaaaccgta gccctgcctc 10500 aaaaaagacg gcgaaaacca ccgtccgatt gtccacaggc ttcggcacca cagctttccc 10560 cggggcgaaa gcctgccccg caatcaacgc cccagagctg actagtttcg ccagctcgtc 10620 gtcatccaca agggaggccc ccaaaaaggt ggtgttatcg tcgtcgaccc ggccagggtc 10680 cggtccgacc gcctgaacgg ggtttggttt gcgaggggcc atggcgaaag gcgtgtgggc 10740 cgtggcgaac caatagggta ggcgaaacac ctacggattc aagaaacgct gtggaaggag 10800 ataacgaagg aggagagcgc acgcagtaaa agtggcaaag tgtgacggtg aaagggaaag 10860 gggtgagaat atatagccca ccgagtcgac gtttcgcata ccctccaatc acaaagagcc 10920 acgtggcgcg agggtaggcg taacggtaaa atcccatcat ccgaccagca cagtaaaaag 10980 cccattaagg gaaagcccaa tactgttcac ttcggcccgg aaaaagtaat gatattttat 11040 ttgcaggaac agtacgggtt tcggcaggag catcgatcga aagggggcgc cacataccat 11100 accacatggt ttgcacggtc tcggccgaag ctccgctctc acccttgccc gcgaggggct 11160 tgttggcgga tggcatgagt cccttcgacc gaatctgccg aaacccatgg cgaaaaccac 11220 gagccaagga tgatgcgagg cgaagggtcg cacgagtgca cgccgaagaa ggacgacttc 11280 gccatgccga agaaggacaa cttcgccagg accggttcgc cccggcatcc agcccagaga 11340 aggacagctt cgccaggtcc agttcgcccc cgcgagggcc aaagtagcct tctcggccca 11400 ccaagcatag aggccatagg gccggcgatc gcccgatggc ccatcaaggg cccatgagcc 11460 cccctttacg ttatgtaacc ctgtaaacgt ccctttcata agggcaacta tgtaaattcc 11520 tcagtacaac ctagacccta gaagtgagaa tctgtaacgg ggctataaat agccccctag 11580 ggccatgtaa tacaggggag aaaattcaag aaatcaatat acttcgtttc tttccaacca 11640 ctgttaagta accacgtctt tcgacgtatg cggttgtcgt ttcgacaaca 11690 // ID MuDR3_OS repbase; DNA; ORY; 8514 BP. XX AC AC144742; XX DT 27-AUG-2005 (Rel. 10.08, Created) DT 27-AUG-2005 (Rel. 10.08, Last updated, Version 1) XX DE MuDR-type DNA transposon from rice. XX KW MuDR; DNA transposon; Transposable Element; Interspersed repeat; KW MuDR3_OS. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-8514 RA Jurka J.; RT "MuDR3_OS: MuDR-type DNA transposon from rice."; RL Repbase Reports 5(8), 202-202 (2005). XX DR Genbank; AC144742; Positions 110272 101759. XX CC ~80 bp TIRs. Multiple recent insertions. XX FH Key Location/Qualifiers FT CDS 658..3384 FT /product="MuDR3_OS_1p" FT /translation="MSNKQIFQVYHGPGNVRYGPTGVDLSDFIVSERGIDR FT PAERSVPSIKGWLMRGLRVDPQTSDITINVIVSRATEGFYWELMPVQNSRV FT WRWYLENALQRGWPLALVPFVHPKDPGVQMNMDDGEGPSAEVNETSVEEVN FT AREDGGVVAPVGIQPGGVADEGETVGAIVNEMEREDSDNERVEEGDSSDDE FT TDINQAEWASEDFSGLIVSEEDSVRWEYKENEVIQGAIYSRAEDMKEAVKH FT FAVSLHREFRVAKSNRSQYEVRCVKEKDGCPWRVHAYKGKWKDYWTVSVVT FT KHTCFLPGVQKYHRNITCAFVASEMYAHVIDNLTYEPRSIIRHIEETYKYT FT ISYAKAWRAKQKIIEMRFGTYEASYDNLPCLLGVIEERNPGSSYELKKFPS FT IEHPSKSVLQRAFLALHACKMAFVNCRPVLCIDGTFLTGKYRGQILIAIGV FT DGNNQVLPLAFAFVESENTDSWYWFLKLVKTKVVGMRPNVCLIHDRHAGIL FT RAIEELQFGSMERGYPGVWEDVQSRWCMRHMGANFFKQFKNKELMNMFKRL FT CNQNQEKKFNELWKRLDELTAKCSDQRAAAPSTAVADPPQALGPLPTDSPT FT LVRRTRLEIRKFSQWILHEPKEKWAKAYDTGGARYGIMTTNLAEVYNWVMR FT GVRGLPLVGIVEFILHRTCRYFRDRFQAVLPSMPNNSILFGAFMQKKLEEL FT RKKAMKHRAVVQGTQQHRFEILCQDKAGRGIYRKRVKQECVLKADGTCHCS FT CAEPKLLHRPCTHVIAAAAECGIPDAVYVSQYFSKQAIYHTWSGEIYGFGI FT AGEFTETNDEVLNIPDPSKLRGKAGRRRTRRIHNDMDESEAGRVKRCRKCD FT EHGHTYKHCPKDKEKPSAAEAGLSGSAADVARPKGEGTTSTRPRPRHRRAT FT SGYVV" XX SQ Sequence 8514 BP; 2120 A; 1972 C; 2171 G; 2251 T; 0 other; ttttcggttt tagatttttt ttaaaaaata tttacagaaa taatctatcg gccaaaaaaa 60 attataaaaa tagaccctgt cgcccacctc tggggctgca agctgacgtg gcaaacgggg 120 gaggaacggg cggtgacgga gggagggttt ttttttgcag gaaaaccctg gggcggcaag 180 gggcccgaat gcaaaaaagc cagtcggggc tggctatttt gcaggcggcc ccttgccgcc 240 ctctggccgg gcggcaggcc tcgctgccta taaaaggcct gctgcccagc ccccagccct 300 cattcttctc tcctcaattc cagtgaaaaa aaaagaagag aggggaggag aagagaagaa 360 ggggcgaagc cctgccggat tcagacgccg atttcaggta atattcatag atcctatatg 420 tgactattga gttaaatagt gtgtattctt taaaaatttg tttgaataaa tgcattatat 480 ttttagggtt ttagttgtac taatctagaa gtgcgtattg tagatatcgg taactacgta 540 gatctgctag tttggaatca atacattacc gttgcattgg cttacacaag aagatattac 600 gttgtagatg tttattgcat gaaagagtaa tatgatctag ttatttcgtt gacagatatg 660 tcgaacaaac aaatattcca agtttaccat ggaccaggaa acgtccgtta cgggccaact 720 ggggtagatc tgtcagattt tattgtatca gaaaggggaa ttgatagacc ggctgagagg 780 agtgtacctt ctataaaagg atggttaatg aggggcttga gagttgatcc acagacaagt 840 gacataacaa tcaatgttat agtaagtcgg gcaactgagg gtttttattg ggaactaatg 900 ccagttcaaa actctcgagt gtggagatgg tatttggaaa atgcattgca acgcgggtgg 960 cctctagctt tggttccgtt tgttcacccg aaggatccag gtgtgcagat gaacatggat 1020 gatggcgagg gaccaagtgc tgaagtaaac gagacttctg tggaggaggt caacgcacga 1080 gaggacgggg gcgtagtagc tccagtgggc attcaaccag gtggagtggc cgacgagggg 1140 gagactgtcg gtgccattgt taatgaaatg gagagggagg attctgacaa cgagcgtgta 1200 gaggaaggtg attcgtcaga tgatgagacg gatattaatc aagcagaatg ggctagtgag 1260 gatttttctg ggctgatcgt ctctgaagag gatagtgtga gatgggagta caaagaaaat 1320 gaggttattc agggagcgat ttatagtaga gcagaagata tgaaggaggc ggtaaaacat 1380 tttgcagtgt cacttcatag agagtttagg gttgccaagt cgaaccggtc gcaatatgaa 1440 gttcggtgtg ttaaggaaaa agatggttgt ccctggagag tgcacgcgta taaggggaaa 1500 tggaaggatt attggacagt gtcagtcgtt accaagcata catgttttct acctggtgtt 1560 cagaaatacc acaggaacat tacttgtgca tttgttgcat ctgagatgta tgcgcatgtc 1620 atcgataatc tcacatatga gccaaggtca ataatccgac acatcgaaga gacatacaag 1680 tatactatta gctatgccaa ggcctggagg gccaaacaga aaataataga gatgagattt 1740 ggaacttacg aagcctcgta tgacaatttg ccatgcctgc ttggtgttat cgaggaaaga 1800 aaccctggga gctcttacga attgaagaaa ttcccctcaa ttgaacatcc tagcaagagt 1860 gtgctgcaaa gggcgttctt agctctacat gcatgcaaga tggcattcgt gaactgtcgt 1920 cctgttctct gcattgatgg gacattcttg acaggaaagt atcggggcca gatactaata 1980 gcaatagggg tagatgggaa caatcaggta ttgcccttgg catttgcttt tgttgagagt 2040 gagaataccg acagctggta ctggttcctg aaattggtta aaacaaaagt tgttggtatg 2100 aggccaaatg tgtgcctgat acatgatagg cacgctggca ttctgcgagc gatagaagag 2160 ttgcagtttg ggagtatgga acgaggatac cccggtgttt gggaagatgt acagagtagg 2220 tggtgcatgc gtcatatggg agctaatttc ttcaagcaat tcaagaacaa ggagctcatg 2280 aacatgttca agaggctgtg caatcagaac caggagaaaa aattcaatga gctttggaag 2340 agattagatg agttgacagc caaatgcagt gatcagcgtg cagcggctcc atcgaccgct 2400 gttgctgacc ctcctcaagc tcttggacct ctcccaacgg atagtccaac attggttaga 2460 agaactagat tggagattcg gaaattttct cagtggattc tgcatgaacc aaaagagaaa 2520 tgggccaagg cgtatgacac aggtggtgct agatatggaa taatgacaac aaatttggca 2580 gaagtttaca actgggtgat gcgcggtgtc cgtggactgc cactagttgg catagtggag 2640 ttcattttac ataggacatg caggtatttt agggatcggt tccaggcagt tcttccctct 2700 atgccgaaca acagcatttt gtttggagct ttcatgcaga aaaagctaga ggagttgcgt 2760 aaaaaggcca tgaaacatcg agctgtagtg caaggtaccc aacagcacag gtttgagata 2820 ctatgtcaag ataaggcagg caggggtatc taccgcaaga gagtgaagca ggagtgtgtt 2880 ctcaaagccg acggcacatg tcattgctct tgtgcagagc cgaagctgct ccacaggcca 2940 tgcacccatg tcattgctgc cgcagcggag tgtggcatac cagatgcagt atatgtgtca 3000 cagtacttca gtaagcaagc aatatatcat acatggagcg gcgagattta tggattcggc 3060 atagctgggg agttcacaga gactaacgat gaagtactta atattcctga cccatcgaag 3120 ctccgaggca aggctggaag gaggaggact cgtcgcatcc acaacgatat ggacgagtca 3180 gaggctggca gggtgaagcg ttgcagaaaa tgcgatgaac atgggcacac ctacaagcat 3240 tgtcctaaag acaaggagaa accaagtgcg gcggaggcag gactatcagg atcagcagca 3300 gatgtagctc gccctaaggg tgaaggcact acctccactc gaccacgtcc taggcatcgt 3360 cgtgccacgt ctggctacgt ggtgtagttc ttatgttcta tgtcggcatg tggatttgct 3420 tgtaattcgt ttcgaactta tcgatgtgtt tatgtttcgt cgtgtaatgt cagacttcgg 3480 catgtcatgt ctttaggtct cgtgatgtaa cgtcggacta aggcgcctaa cgtctttagg 3540 tatgctgatg tatgtcggac ttcaacacgt aatgttatgt tatattattg aactctacat 3600 atatgttaaa ttgcacgtca tcgttatgta ccattagtaa cgtttgctat atttaaatag 3660 cctgtactct tgttgtatat aattaatctc atgattttat tactatttca taattttgca 3720 agttatcttt tgttttacat tactattttt tgaattgtta taacacgaaa cactatattt 3780 ttcagagatg gcacgtcagg atacacctca gttgttggac ccgacgatag atcaccgaca 3840 ccggtctcac cttactgcgg tgctgggggc tcagcttggg acgttccggg cacggacgtg 3900 cggtgagcta ctcacggttc acgactcctt tgtcgagagg tacgaatagt gttttactat 3960 aagttagttg cactgtaata ttttttataa tgacatatta atttgttatt gcaggctacg 4020 tgaggccagc ctcctaccga tgtgtcggct agtggaggct gcggccggcg acgcggaccc 4080 ggccagacga tggactgtgg acaggtccct cctagcagct ttggtcgatc gatggaggcc 4140 agagacgcac acttttcact tgccgtgcgg tgaggtagcc cctaccctac aggacgtatc 4200 gtacttgtta gggctaccgc tcgtgggaga cgctgttggg ccagtgacca cggctgtgga 4260 ctggcaggac gatctgacgg cacgtttcgc actagtacag cgcgcaccgc acctcccgct 4320 cgagccgttg gcacaccacc gcaacaccgg acctacgaag aggtggctgc ttcagttcac 4380 cgtgagtgtt tttgtaccga aatgacaatc gtattacata tttagtccgc agttatggtg 4440 cctaacattt tatcgactgc ttgcaggttg agcagctata ggcggaggcc gacgagtact 4500 cctacagccg atgtttggag gcgtacttgc tctgactttt tggctgggtg atgttctgtg 4560 gcggtcacgg gcacgcggtc gacaagggac tcgtgcacta cgccaggagc atcgccgacg 4620 ccgcggtagg cgaggtgcct cagtggagct ggggttccgc gttgttggcg gctctgtacc 4680 gtgcactttg tgagtcttgc acgaagacgg atcccagcgc gacctttggt gggtgccctc 4740 tctttctttc tatctgggca gctgaaagga ttgcgatcgg ccgccctgag gtggaccagc 4800 acgcgtacga ggagtcactg tacgaggagc gaccagaggt cgactaccct acgatgggta 4860 ctatgtggtg ccgtcgtcag gtacgttgca tcgatcttat cgtattgtta agttaattgc 4920 taagttcatt gtacatcaca tcgatcgtct cgtattgcag cgccgatggg ctcatgtcca 4980 ggttaggcgg tcatatcctg agtttgttat ggagttcgac cgccttctgc cgactgacgt 5040 cgtgtgggag ccctacagtg ccgcggctac ccaggctcgt gcgccgttgg gtctgtccta 5100 actctgcacc agggaccagg cgtactggat gactacggtt ccgatggtct tcgacatctg 5160 cgttgagcct cacgcccctt tccacgtgat gcggcagttc ggcttccgtc agccctttcc 5220 agtaccgttt ccgaccaccg tcccagctgc tgttcaccgg taagatctta cactacgctt 5280 tccgttgttg cattaaaatc tgcctgttca caataatttg taacatctgt cgtttcacac 5340 taatattaca cattaattcg caggtactcg cgcaagggtc agcagtcagc tggcgactgg 5400 cccgccaagt tggcgacttt tgttgaggac tggttgctcg caaccgagga ggtcgtggac 5460 cacaagggag agccacacac tgaggagtcg taccaggcct acctacgctg gtaccagcca 5520 cgcacccgta ctagggtcac cttcgctccc ttggagcagc agccccacat tgcgagcact 5580 agagacctct atgccaggca ccgtgaccag gacttcgctc gtgctgtgag taccctgcat 5640 cgcaccattc ctttatgttt tcatgtcttt ctcttcgtca aattttacga atatttacga 5700 acaaattaac catgcaggtc gacgacatca accgggtcgt cgttgacggt tcaacgacga 5760 tccaacgttt aggcgcgggg attccggtac ccgtagagga acacctgacg acgtacacgc 5820 ggatggtgga gtcgatgcac tcgattctcc gagtgctcac ctgtcgtgca gacgacgttg 5880 ctcgggcaga cgcagctgta cagcggccac ccgtaccgac tggtccccgt ccagctgctc 5940 acattcctag gccgactccc cctccgcacg gaggtaagta tttttattac tatttctgta 6000 catgcctcgc acatataagt gagccgtttc acttgccgat tgctttaggg tttcgtgcac 6060 cgttcagcac cccgccttcc tcggctaggc cttctgttgt gccccccaca ggtacttaaa 6120 aaaacaacat tacttcgaca atcaatttac atacatttta tgtcttagct tacaagggtc 6180 ccgttgtcga tgtgtaggtt tcgcccagtt cgctatgacg caggccgccc acttctccca 6240 ggctgcaggg tcagcgtcac aggcagccgg cacgtcgagt cagggtccac cactggacca 6300 tgctgggacc tcgtcggacc gcttgctgcc ttccaccttg ctcttcgaca tcactgactt 6360 cgacttcgct tcaggctcga cagaggacgt cattggcccc tcacagctgg gaggcgcacc 6420 gccggtgcag acgcaggacc aggcgcaggc cactcctccg cgggacactc gtgctacccg 6480 tgctgtgcca ccggatcgtt tcacctactc ccaggaccac gtgcgagcac aggcccggag 6540 gaccaagcgt ggtcgcggcg cggggcaggg ccagtagagc agtcttctct ttgtttactt 6600 gcttcacttt ccagtactgt atgcttgtgt aatgactacg ttgttgttat atgtgcacga 6660 tacctttcgg cgcatgcacg atacctttcg gtgcatgcac gactactttc tgccgcaccg 6720 atgcagcctc ctttattcgc gtgtgatacg agtatttgcc cgccatttgg cgcatacgac 6780 caatgtaact ttcggcgccg atcatgcatg tatctttcgg cgccaatcag gcgtacccac 6840 cataccccac cacgttcaca tgtcaggggt atcactcgat tttttgcgcc tatataagtc 6900 gccttaacga gtgaggcctc acaatctttc agaactcagt cacattcagt actctcttcc 6960 ccacttgctt cattacaaat ccgaccggct ttcgtcaatg gctagacgcc ggggtgttga 7020 ggatccaaac tggcgtagcg atccttgtgt atacctacta ccaccttggt gccagcgtcc 7080 tctctgccta tgcggtgatc gatgccaact aatggcttcg aggaatcctg atattcaagg 7140 aaggcgcttt tttaggtgcc ctaactatga ccgtgaggta ttttattatc tgcatatgct 7200 tattcattcc gtatgggcaa tcgctttatt cttcgtaaca ctactctatt cggcagaccc 7260 gcactacggc ttgcgcatac atcgagtggg tcgatacaga aaatcccgtt ctcgacctaa 7320 ccacttgttt acaagaaggt cgctggtatt tcgcatccga aagtactgag caatacttac 7380 agagaaaagc ggcttatgaa cgacaatgtc gtgaacaaca gagcgactgg cgggtgctaa 7440 ctacggcact ccctccatgg gaagcccgtc caagatgcag gtgtggtgat cgttgtcagg 7500 ttcttcgttc cataaatcct acaacattgg gtcgaaggtt ctttgtttgt ccaaatattc 7560 ttgacgacga tttcatggta agaatatttt gattacatga atccttattt tctcacaaca 7620 tttactaact ttgcttgctt tacatctatt ctttcctccc aggaaccacc aaggagatgt 7680 caatacagag aatggataga caccagaagg gttctaactc cacctagccg tgttgtgcag 7740 cttgaactac cagagcaata cagggttact aaagcgcggt ttgagagagg agagggatcc 7800 tcacgtaggg gttagctatt atcggacaac ttggcatatt gaaatttcta ctatcatgct 7860 tccttgtccc attactacat cgtcgttgtg ttcaactatt gcactacctc cctcctagtt 7920 cgaatctaat atcatctatg taaccgtaat gcaaatagtc gtatcatgtt caaattgtac 7980 tactattact tcatgttaca taattctcct tgtttaagtc catataatgt ttctacgacc 8040 cagactgcga taggcctata taaattatcc gagtaataat acgtcgaata aggtacaaaa 8100 taatacctca cttaacatat gaaattgcgc aacaaccaac ttcaatacat ttttataaca 8160 atattaacaa gttttaccaa taaatacttc tttatttatt attaacataa catagaaaat 8220 tcttttggcc gtactttttt catctgggtc tcttgccgcc ctctattggg gcggcaaggg 8280 acccagatga aaaagtacgg ccgcaagctc tttatgggcg gccaaaattg caattagcta 8340 tgggcggcaa gggcctaatc gcaattttgg ccgacggcgg cagacggcgc ggtcgaccca 8400 ccgtctgcca cgtcagcttg ccgcccacca ttagggcggc aggggctatt tctgcaattt 8460 ttttggtcga tagattattt atgtaaatat taaaaaaaaa tctaaaaacg aaaa 8514 // ID HELITRON3_OS repbase; DNA; ORY; 12693 BP. XX AC AC078840; XX DT 10-JUL-2002 (Rel. 7.06, Created) DT 27-JUL-2005 (Rel. 7.06, Last updated, Version 2) XX DE HELITRON3_OS is a rolling-circle DNA transposon - a consensus DE sequence. XX KW Helitron; DNA transposon; Transposable Element; HELITRON class; KW HELITRON3_OS; helicase; replication protein A. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-12693 RA Kapitonov V.V. and Jurka J.; RT "HELITRON3_OS."; RL Direct Submission to Repbase Update (MAY-2001). XX DR GenBank; AC078840; Positions 34442 47134. XX CC HELITRON3_OS encodes the 1425-aa OSHEL3p and 420-aa OSRPA3Hp CC proteins. CC OSHEL3p is composed of the rolling-circle initiator and DNA CC helicase domains. CC OSHEL3p (positions 3077-7452): CC MQLLMLTNNAALCPERSYYGGPSHECPYCGAVFWYQERVKRDSAVSQRRIVYNLCCRGGKISLPELKYPP CC DMLAKLLKFDGDAQSKRFLRQIRSYNSLFAFTSLGADVEKSINNGTAPYVFKINGVVHHRIGSLLPQRGA CC KPKFAQLYIYDTENETANRINIFDRENSNDEPDPSIVTRLGAMLDQHNDLVKSFRYARDRLNEHGNEQIA CC LRLLGCNAKDEVQYNLPTSGEIAGIIVGDSSNDAYTYDVVVQSSDNRLRQVSALHPSYMALQYPLFFPYG CC ERGFHLGIKYTDFPSIAGTSRRYVTMLEYYRYRFHYRLNKPNPYTCCGRLSDSICVDAYSTVEGSRLKFI CC HDHQPELRSECVQGIADAIDHGLESGDSVGKKYVLPSSFTGGRRYMVQNYQDAMAVCRVFGSPDLFVTFT CC CNSKWQEIIRYXGGKDLRSCAGRXTSSRHVFSYIILSCXYCSCXYPCFHVVLYTVEFQKRGLPHIHCIMW CC RAAADAEFSATAVDSLICAEIPDVFSDPLGYALVDEFMIHGPCGDKNKSCVCMKNGHCSKHFPKGFQEET CC TMDEFGFTVYRRRNDGRYVVKNGIKLDNRWVVPYNMKLLKKYQAHINVESCNKSNMIKYLFKYITKGGDR CC TKLYFETTGNTPNKTVDGTVLPPNEIDEYINARFLSTCEAFWRAFEFDIHYRVPAVERLPIHLPNMNFVQ CC YKKGTDLKKLLDSPAAKKTMLTEWFECNKKHPNARTLTYCDFPKQWTWDNSARCWRPRTPVEKIGRIYYV CC SPAAGELYYLRMLLMTVKGAKSYADVRTFEGTVYPTFRQACESRGLLENDNDWHLLFDEAIVSASSLQLR CC QLFVTVVMFCSVGNVRSLFDKYWLYFTDDIQHRLRTALSNPAYVVPHDRLLSLLIKELHSAFANSGGNID CC DYDLPRSTIHSDDEFGNRMVNEELALDTAALAAHASLMIPXLNSEQQKIFDTIVSRVSESRPGFFFVYGH CC GGTGKTFLWNVLISKIRSEGNIVLAVASSGVASLLLPRGRTAHSRFKIPIDIDENSICSIKRGTMLAELI CC QKTSLIIWDEAPMTHRRCFEALDRTLRDLLSEHNPSNSVLPFGGKVVVLGGDFRQILPVIKKGTHNSIVD CC ASITNSPLWQHVVLLKLTVNMRLFQSGLSEGHRHDLEQFARWVLALGDGMLPVSKRIDESEATWIDIPDD CC LLIRASDDKIYSIDTQIRAIVCPNNLTVDEINDYMVAMIPGEMKEYLSCDTISKTSEHIPDFDILYPTEF CC LNSINANNFPTHRLALKKGATVMLLRNLNQSLGLCNGTRLLVLSLGHRLLECVILTGSNVGERAFIPRIV CC LSTTSSKWPFVLQRRQFPVRVCYAMTINKSQGQTLSRVGVYLKKAVFTHGQLYVAVSRSTSRDGLRILIE CC DDDGACSSKTRNVVYHEVLEAVRLM CC OSRPA3Hp is similar to the RPA70 subunit of the replication CC protein A. XX FH Key Location/Qualifiers FT CDS join(7766..7909,7984..8259,8923..9000,9088..9210, FT 9301..9459,9533..10012) FT /product="OSRPA1H3p" FT /translation="MAYSMLSKLELCADNPRICVRVSRLWEFANPNDETQL FT LHLGLVLIDQEGTSIAAQIYPPCDLQFREIITEGKVYYLEYYRVREWSRRY FT RPVNNSLSICFTRWTKVEQVADPAADFPLYTYSLTPYGGLRQRVDRKEEFT FT GDISLSGNSACKWYINVNTPEVNSFKESIQGKYEPIKMIELPAVGAVRTGA FT EQKSIAQIKDLNPFMFRKNEFMVTVVIKKIDTESSWWYPACDSCKRTAKPY FT GKSYRCGNTSCPAVVSASPRFKLSLIAGDDTGDTKFVLFGRTAQRIIGRPV FT EMLIQNNPAGIEFIPKEITDLLEKEFTWNVAFTENTLSSSTVSFQVNLIVR FT GPDNPCSSALQSPSASQASSAVPSQALSPGLSHGLSIGQCSAAADPSIGFA FT DPIAGIDSPLAASIKHKKPETEYQSK" XX SQ Sequence 12693 BP; 3185 A; 2874 C; 2851 G; 3783 T; 0 other; tcggggaaat taaagacaac cgcgaagtgc tcgcaccaca gcgctccggg cgtttttggg 60 ccggcgtgtt cgcacctgct tgtgtccacg tcgccctatt tggtgtggct gtgttgtgtg 120 aacccataag cgtactcgca ccgtcactgc tatgtggggc agggagggat gtgggttgct 180 gttcatggtc ctatcaatgc tttcgttgcc tgtgcgctta gtccattgcc tcaggtttct 240 ggacctgtct ctgcgtgccc cacttgcagc ttctttggtt cacagtgcac atggagtaca 300 gggtttttaa caccctgaca tgcttgacca atggtgcagt ttgcacggct ccctaacggc 360 atgactctgc tcctgcctac ctgccatgcg tgctccgccg aatgcttata tgcagcacct 420 ggtctaccgt gctccaggta gagcccttcg gcctacggtg tgcatgcgtg atggaccagg 480 cccacggcta ttttggtctg ctacatcgct ttgatccgct gtgtattccg ttgggcttgc 540 attgaaaaaa agtcaccaca caacgtctcc tctgtaaacc ctctgcgggt gggctcgctg 600 ttttgcgctg tcccacatgc catatgctct ggtgcgccaa atagattgcc tccctgctgc 660 acggcgccaa atagattgcc tccctgctgc gccatgtttt aatgcccacc gcttgcaccg 720 gcccgctgtc aggtgaggtc caatcaacgt cggcgtccgc cataccagcg tgcgtgatca 780 tcaatggggc aatgtcctgt tttgccttca gcttcttcct ccccattgtg agagatttgt 840 ttgtctcctc cgcttttgct ttgctctgct ctgctgtttc cctctcctgc tgacttcttc 900 agccatgccg acagcttggt gggttgctac ctccatacct agcagatgtc ttcctcatgc 960 gatttggttg gttggtttga cgctacacgg ttggtgtgca ggtctgcgtg tgggatttcc 1020 gccagcattg ctgcgtagga tttggtgttc tcgcactggt tagttgcttc cttgatgtgc 1080 tgtgtcctgg atggtcgatt cttcatcctt tcattttgct tgctgtgggc aggggcaggg 1140 gaggcggtcg cattgctcta ccgcctgttg gtcgctggca gttcacggtc gagggcaagt 1200 tgatctcctt ccatcagagt gtgcctgcac cggctcgaag aggttgctgc tcttttcttc 1260 gctgattttc cccccgcttt tcctttctat ttgttcttat gtttgccctt gccttttcgt 1320 ctgggttctt ttctcggtgg cctctgttgt gtctgccatg ctgctatgtt gtgtgcgtga 1380 gaaaataatg ccggttggtg cctcacagat tactgtgcat gggcccgtat aggcccgcgt 1440 accagtactg gctgcctccc tcttcttata taacccaaac ttctctgggc acttgcctct 1500 tgcgtagagg ttgctcttgc tggtttttga ccaaccttcc agatcttcct ttctaccact 1560 cacctaggcc ccatctagca gcgccatggt taatgtgggg gtctcatttg tctctctgtt 1620 gaatgccgtt gcttggcatt gtcagctccc gctggtgtcc tatctttggg aaatagatgg 1680 gaatggcatg ctgctagcag gtgttgagct tgcgctccca tcggaagaca tggccggcca 1740 gattgttagc aagttctttt gggtctgcgc gtctactcaa acaagtgact cgcatgaaat 1800 ggtcgcgcat caggctgtta ggttcttgca ggctaggtac ggctttattg tccacgatta 1860 caatcttcag atgttacttt cctaccggag aatagcagcg tctacagtag atgcagctgt 1920 tacagcctca gcgtgccttg ctaggttcca gtcacgatat gctccaacag atctatcgtg 1980 tgctggtgtt gtccagcgat gtaacactat atggttcaat tttcttcatg aggaccacat 2040 gtttagcaac atgcacaacc tttaggggta ttttgtttcc tttagagggt gttagtgttt 2100 ttcgctactg agtttgtctg caatgagagt gtgcctttat gatgttatta cataatgttt 2160 tgtattgtct gctttcgatc ttatgttctt cttttgtgca ttgctttcgg ttagttcggt 2220 gctctctttc ttacgactga tctgacgacg aaaaaatagc tcccctttta tccgctgtgt 2280 tgttgcctct gagctatgac gagtaatccc tctccgcgag ttcaacgggc ccgtgagagc 2340 cgtttgcgac gccgtgcttc tattggccag ggtttgtgct tcttaacttg atttagaggc 2400 gcttcttggg ttagatcgat aagtttgatc gaccagatag ctggggttta tagcattttt 2460 gcaggctcct ctgttcggcg gcgtaaatcc tgtggtctct aggggaccaa atggttcgcc 2520 aaatgctgga atagatgtgg agcagtcggt tcctgaacaa gctctggctt ctgatgttca 2580 tgtgcggtct caggttgcct ttgttgctgg cacaggtcct ttgacccaga attccataac 2640 caccgctagc attaagttga gcgatagttg tcccatgggc tccataactc ctgacaatgt 2700 cgattatgct tagctccttt gttctcctca ttgcgattag gaaagagaac cctactagat 2760 gtgccgcgcc acactgctgc agcaaacagg gaaaaacgac gcctcaagag gtctggttct 2820 cagccagacc acctggtaag aaaaatccta gaaggtatgg ttaaatatac cttttgtttc 2880 ccctgtgctc gcttagtgtg gcagttatgt ctgctaacca tttttgcttt caccgatgct 2940 tgcttcctgg gatttcgaat gcataggtcc cgttcctaca gtggatgaca tcttgccttt 3000 acctaaggat tacattgcgt ccttaaaagg tttgctcggt gtctactgtc ttacatagct 3060 tcctttctgt caatcaatgc agttgttaat gcttacaaac aatgcagctt tgtgcccaga 3120 gcgatcatac tatggtggcc cttcgcatga gtgtccttat tgtggtgccg ttttttggta 3180 ccaggagagg gtaaagagag atagtgctgt ttctcagaga aggattgtct ataatctctg 3240 ctgtaggggt ggtaagatca gcctgcctga actaaaatac ccaccggata tgttagcgaa 3300 gcttctgaaa tttgatggtg atgcacaatc aaagcgtttc ttacgccaaa ttcgatctta 3360 caactcgctt tttgcattca cttcattagg ggctgatgta gaaaagtcaa ttaacaatgg 3420 aaccgcacca tatgtcttta aaattaacgg cgttgtgcac catcgtattg gcagcctctt 3480 gcctcagcgt ggtgcgaagc ccaagtttgc tcagctatac atatatgaca ccgagaatga 3540 aaccgctaat cgaattaaca ttttcgatag agaaaactca aacgatgagc ctgacccatc 3600 aattgttaca agacttggcg ctatgctcga ccaacacaat gatctggtca aatcgtttcg 3660 ctatgctaga gatcgtttaa acgagcatgg taatgagcag attgcactta gactgcttgg 3720 gtgcaatgct aaagatgaag tccaatataa cctgccaacg agtggtgaga tcgcaggaat 3780 aatagtgggc gacagctcaa acgatgcgta cacgtatgat gtggttgtcc agtcttcgga 3840 taataggctg agacaagtct ctgctttgca tccttcctac atggctttgc aatatccttt 3900 gtttttcccc tacggtgaac gagggttcca cctcggtata aagtacactg atttcccgag 3960 tattgctgga acatcacggc gatacgtgac aatgcttgaa tactatcgat atcgctttca 4020 ttataggcta aacaaaccga atccatatac atgttgtggc cgtcttagtg actccatatg 4080 tgtggatgca tactcaactg ttgagggatc gaggctgaaa tttatacatg accaccaacc 4140 tgagttacgt tcagagtgtg ttcaagggat tgccgatgcc attgaccatg gcctcgaatc 4200 tggtgattct gttggcaaaa agtacgtctt gccatcaagt ttcactggag gtcgtcgcta 4260 catggtccag aattaccagg acgcaatggc tgtttgccgc gtgttcggtt cgcccgacct 4320 attcgtgacc ttcacgtgca actccaaatg gcaagagata tacgatgccc ttgtgtttga 4380 accaggccag gtgccggtct gacatgattg tacgagtctt tagcatgaag gtcgatgaat 4440 tcatatccga tattaaggag ggaaggacct tcggtcctgt gctggcaggt agacgtcatc 4500 tagacatgtt ttttcctata tcattttgtc atgttagtac tgttcctgct gatatccatg 4560 cttccatgta gtgttgtata ccgtggaatt ccaaaagcgt ggtctcccgc acatacactg 4620 tattatgtgg cgtgcagcag ctgacgccga atttagtgct accgctgtgg acagtttaat 4680 ttgtgctgaa attcctgatg tgtttagtga tcctttgggc tatgccttag tcgatgagtt 4740 tatgatccat ggcccttgtg gtgacaagaa taaatcatgt gtctgtatga aaaatgggca 4800 ttgctccaag catttcccta aaggcttcca agaagagacg accatggatg agtttggctt 4860 tactgtatat aggcgtcgaa atgatggacg atatgtggtt aagaatggaa ttaaacttga 4920 caatcgatgg gtcgttccat acaacatgaa attactgaaa aaataccaag cgcacattaa 4980 cgttgaatca tgcaacaaat ccaacatgat aaaatacctt ttcaagtaca taacaaaggg 5040 tggtgataga accaaactat actttgaaac aactggcaac acaccaaaca agactgttga 5100 tggtactgtt ttgccaccaa atgagattga tgagtacatc aatgctaggt tcctctcaac 5160 ctgtgaagcc ttttggcgtg ctttcgagtt tgacatacac tatagagttc ctgctgtgga 5220 acggttgcct attcatcttc caaatatgaa ttttgttcag tacaaaaaag gaaccgacct 5280 aaaaaaattg cttgacagtc ctgctgcaaa aaaaacaatg ctaacagagt ggttcgagtg 5340 taataaaaag catccaaatg cacgaacact gacctattgt gatttcccaa aacaatggac 5400 ctgggacaat agcgcccgct gttggcgccc aaggacacca gtcgaaaaaa ttggtagaat 5460 ttattatgtc agcccagccg ctggagagct atactacctg cgcatgctgt tgatgacagt 5520 taaaggcgca aaaagctatg ctgatgttcg gacctttgaa gggactgttt acccaacttt 5580 taggcaggca tgtgagtcta gaggccttct tgagaatgat aacgattggc atttgttgtt 5640 tgatgaggcg atagtttctg cgtcgtccct gcagttaagg caactatttg tgactgttgt 5700 aatgttctgc tctgttggaa acgtccgatc attgtttgat aagtattggt tatactttac 5760 tgatgacatt cagcatcgcc ttagaacagc gctctcaaac cctgcttacg ttgttccaca 5820 tgataggttg ctgtctcttt tgattaaaga attacactct gcatttgcaa acagcggtgg 5880 taacatagat gactatgacc tcccgcgatc aacgatacat tcagatgatg aatttggaaa 5940 tagaatggtc aacgaagaat tggctcttga tactgctgcc ttggctgctc atgccagcct 6000 gatgatacca tgactaaact ctgaacaaca aaaaattttt gacacaatag ttagccgtgt 6060 tagtgagtcg aggcctggat ttttcttcgt gtatggccat ggtggcactg gcaaaacgtt 6120 tttgtggaac gtgctcattt ctaagataag gtctgaggga aatattgttc ttgcagttgc 6180 ttcctcagga gtcgcttcgc ttcttctccc tagagggcgc actgcccatt ctaggttcaa 6240 aataccgatt gatatagacg aaaatagcat atgcagtata aaaagaggaa caatgcttgc 6300 agaacttatt cagaaaacat cccttattat atgggatgaa gctcccatga cacatagacg 6360 atgctttgag gccttagacc gaacgttgcg agatttgctt tcagaacata acccttcaaa 6420 tagtgtgctg ccatttggtg ggaaagttgt tgtcctaggt ggtgatttca ggcagatatt 6480 accggttatt aaaaagggga cacacaattc tatagttgac gcatctataa caaattcacc 6540 gctttggcaa catgttgtcc ttcttaaact cactgttaac atgaggctct tccagtccgg 6600 tctttctgag ggacaccgtc atgatcttga acaatttgct cgatgggtct tagcgcttgg 6660 ggatggtatg ctaccggtat caaaaaggat cgatgagtct gaggcgacct ggattgatat 6720 ccctgatgat ctactaatta gagcttcgga tgacaaaata tattcaatag atacacagat 6780 tcttcttacc tagcatcgcg tgctattgtc tgcccaaata acttaacagt tgacgagata 6840 aatgactaca tggttgctat gatacctggt gaaatgaaag agtaccttag ttgtgacact 6900 atttcaaaaa catccgaaca catacctgac ttcgacattt tgtacccaac tgaattttta 6960 aactccatca atgccaacaa cttcccgacg cataggcttg cactgaaaaa aggcgcaaca 7020 gtaatgttgt tgcggaatct aaatcaatcc cttggcttgt gcaatggaac tagattgttg 7080 gtcctttctc tcgggcatcg tctcttagaa tgtgtgatct tgactggatc aaacgttggc 7140 gaaagagcat tcataccaag aattgtgctc agcactacga gttctaagtg gccttttgta 7200 cttcaaagaa ggcaattccc tgtacgtgtg tgctatgcca tgacaattaa caaaagccaa 7260 ggacagacac tttcaagggt tggggtctac cttaaaaaag cagttttcac acatggccaa 7320 ttgtatgttg ctgtatctag atcgacctct agagatggcc ttaggatcct tattgaggac 7380 gacgatggtg cgtgtagttc taagactaga aacgtggtat accatgaggt gctggaggca 7440 gtcagattaa tggtatattc tcgattgttg atttccacgt gacacgaacc atgtttatcc 7500 agagtgctgg gatatatttt aaggtgctaa tttcatttta aaatgtagga ttctggtacc 7560 tagaaccaag tgacaacgtc catgtttgct gctgctctgt tgttcttggt ggctatttta 7620 tcagctctgt tatcgtgttc ttgtgaaaaa atgtttctct atgttctcag gatcttttgc 7680 tgtaagcttt gttctctgtt tacatgcagc tcctacttct taggagggcc ttcacactaa 7740 tgagaaactt ttaccttgct ttcagatggc ctacagcatg ctctctaagc ttgagttatg 7800 tgctgacaac ccacgcatct gtgttcgtgt ttcaaggcta tgggagttcg ctaatccaaa 7860 tgatgagaca caattgctcc accttggttt ggttttgatt gatcaggagg tcagttcttc 7920 agagcactta gcacccagct ttctgtagaa acagattgct ttactaatgt gcttttgaaa 7980 cagggcacta gcattgcagc acagatatac cctccctgtg atctgcagtt cagagaaatc 8040 atcactgaag gcaaagtgta ctatcttgag tactaccgtg tgagggaatg gagcaggcga 8100 tacaggccag tcaacaacag cctgtcaatt tgttttacaa ggtggactaa agttgaacag 8160 gttgcagatc cggcagctga tttccctttg tacacttact cactcacacc atatggtgga 8220 ctccgtcagc gtgtcgacag gaaagaagaa ttcacaggta ttctcattgt gttttgggta 8280 ataaaagcat gacgtacaat gatataatgt ccttcagatc actgacaagt tgcttcctct 8340 tattgtcaat acaaaaaaaa gatgtcattg gcattattac tgaggtaaca tctgttacga 8400 cagttcagac gcgcatccga gatggtgata gcctgaagag aagcatttac atacgtgata 8460 ctaagttagc ctcaaacctt atctattatc ttcattcatg tgaattgcat ttccctagat 8520 ttgttgatct gtttatgtat tatgtcagtt gactaaccag ctatctccag ctgtactgac 8580 tttttttctt caacactaca caaatcatac ccatagaaac tatatgctct aacataatca 8640 ccgtgtccaa caaaccacac atgcgagatt tttatgcact tttttactac atccattcca 8700 tagcgataca atcttaaatg tggcgctatg gggagaacgt gctacaagct ttcctgtcga 8760 tgaagtggtt gctgctggtc agaaagaacc acagatagcg atatttgtgg gcactcttgt 8820 gaggggctat ggtgagtggg ctctcaatgt gtccaaatgt gtttttagac tatgactcca 8880 attgttttac atatcgtgca ctaacacatt tctttcatag gcgacatatc tctatcaggc 8940 aactcagctt gcaaatggta cattaatgtg aacactcctg aggtcaactc cttcaaagaa 9000 aggtttgttc taactttcat ataattcgag tatatttggt ccactctttt acagattccc 9060 atctaggctc atctgtgcgt tttttacagc atacagggaa aatatgaacc tatcaaaatg 9120 attgagctcc cagctgttgg agctgttcgt actggcgccg aacaaaagtc aattgcccag 9180 atcaaggacc tcaacccttt tatgtttagg gtatgttata tgttctgtgt atttaacttt 9240 gctatcttat agatccatga caataagctc cagctaacat ataatccttt ttacacctag 9300 aaaaatgaat tcatggttac tgtcgtcatt aagaagatcg acacagaatc atcctggtgg 9360 taccctgcat gtgatagctg caaaagaaca gcaaaaccat atggaaagtc atacaggtgt 9420 ggcaatacat cctgccctgc tgtggtgtca gcatcaccta ggtgagtact gcatgtcatg 9480 agaactggat acctaaaacc aatttagagt ctaaccatgt ttggatccct gcaggttcaa 9540 actcagcctc attgcaggag acgacacagg tgacactaag tttgtgctct ttgggcgcac 9600 agcacaacgc attatcggtc gaccagtcga gatgctgata cagaacaacc ctgctggcat 9660 tgagttcata ccaaaggaaa ttacagatct tcttgagaag gagtttactt ggaatgttgc 9720 cttcactgaa aacaccctgt cttccagcac tgtttcgttc caagtgaatt tgatcgttcg 9780 aggtcctgac aatccctgtt cttcagcctt gcaatcccca tctgcatctc aggcatcgtc 9840 tgcagtgcct tctcaggctt tatcaccagg gctatcacat ggtctctcta ttgggcagtg 9900 ttcggcagcg gctgatccat ctattggatt tgctgatcca atagctggaa tagacagccc 9960 attagccgct tcaatcaagc acaagaaacc ggagactgag tatcagtcaa aacctccagc 10020 tgagcttcct caggaagaag cagaggtaat cgagcaggca tagtctgaat ttttgtcata 10080 aagcatttct atgttaaaag ttaacattgc taatattgtc gtaatatata taggatgatg 10140 acaaccttcc actaagccag atagttgctg acgatgctac taaacatagc acgtccaagt 10200 cctacaagaa aaggtaccaa gctccataaa catgtttatg ttacacataa ggagcaatag 10260 tttgttctat atgttctaac tgaatttgcc aaacagggct aggccatctc ccggtatagg 10320 agctgctaag aagttgttca agaataatgg tgatggtgct gctgatggca ggtaaactca 10380 gcctgtacaa cctgtgctaa aagaagttcg tagaatgtat gactaagcta ttttgcactt 10440 acatttcagc ggagacaaca atgcctgatg cattgtggga atatgaagct tttgcttgat 10500 acagttgcag gagagtacac cgtcaggttc agtggcctta catgctgcct ccagcttcgc 10560 tacggcttca ctgggcaatg tgttatgtac ctatgcaaac tgtgctattg tgttgctcat 10620 tgtgtgttta tgagcataat acttttgtaa cggaccacga aaacatctac ccatgcgttc 10680 tgtagttagc taggattcta tgttatcata gatgcactgt gataaccatg aatgctggct 10740 gttcattgaa cgttctatgc tggacctcct aagattaatt agactgttct aatgttataa 10800 tccagagcaa tcgaactcga tgttgattct atggttgctt ggttttagaa tccctccata 10860 cagctgttta ctgaaacaac aatgcgttcc atgctcacgg cacggcgcgt acaacgtatc 10920 acattgtgtc gtggtactga tttgtactac aaatacatct atttaacctt caacagccag 10980 cgctccacgc aaaatgtgca gcccatgcct gcacactgac tcccttttta aagagtgaca 11040 tgccagccta cacagctagc tactcctatg aagggacaac acgacctgct aaaaacgcat 11100 cccacactct acacttattt catttcagct catcctcttc ttccaccaca gctcagcact 11160 cctcgccgag tctcacagat tgaatctgaa gaactcctgc tcgaggaaga acaactcttt 11220 tcctaccatc gtttctacgg gtaagggtgc tcttctctac ctctgttcca gggtatctct 11280 ctatgccttg ctatgctatg cagtctatac gaaatgcagc cttctgtttc gacgtgattg 11340 cattgcctga tgcttcggta ataatacatc cggttctatt ttcctagccg cgcatgctgc 11400 ctgcgcttgg cgataggaac aagagctatt tttagaaaat aaaacatata gcaagaaaaa 11460 acctagcaaa acaattaatc cggtctaata ctattatgga tgttctttat tagggatgca 11520 gtttgattgg agcgctgagc taggcgtggg gcagccacaa cgcccttctt cctatggaac 11580 caatcgtcca ttactagcaa caaaattctc taggcgcaag gagatatcgc atatgctagc 11640 tgacatcata tacacaagag ctgttgttgt taaggtgtct ggagctggaa atccgaccac 11700 aacaagaata tcagcgatga taagcgccgt ctgcaggtgt caaattgatg atttcgcatt 11760 gctccctttc cgcccaaaga tgttcattgc catcttcatg gatgccgatc tgcaggaaga 11820 actgtctgaa agagctttca aaaaggtatc gttcaccttc aaggcaactc gcctcacatt 11880 tgagcctttc aagatgaatc ttggtagcac tgtaaatcca ctgtgccagc gggttatact 11940 tgcgctagaa ggcgtgccac cagaatcatg gaacaaagaa gctatatcag agctcatgga 12000 cagttgttgt tttgtagagg agttgtatgg agagcaccat atccaagaac tctcaatttt 12060 taagttagct gcctggacaa cagattgtga ccttataccc aaggtgataa gctggaacat 12120 tgagactaaa gaaggtcgtc gaggatcagc aaacattagt tggatgcaca atgcaactct 12180 gtcagttgtg ctggttcata tagagaagct gttcgactac actgacgaag acagtgggag 12240 tgatagcgat ggagaagttc ttagggaata tgagcagcaa aggccccgtg tccctgttgt 12300 caaaacattt agctgggtgc ccttgaagat tgatctaaac aacggaccag ttgaaggcgg 12360 tacaccagcc atagctccac gccgtcttcc tcttgaagtt cgcaggcgtt gtcgcctacc 12420 ttaattacat aaaacactgc cctctgttat gtatgcttta aagcctaaca ttttcacctg 12480 cctctccatg cttatggatc atgcgaacag ctgcttagtg ttttctctac gtgttctgtc 12540 agtttttgtt ttcctaacaa ttagcctgct gagcaaggcc taaacttcca gttcagctaa 12600 aatatgattc gtatattcct cttagcaatt tactcctttt acatcactga atatgagctg 12660 ataaggcgcc gcgaagcgcg ccgcaagttc tag 12693 // ID SZ-61LTR repbase; DNA; ORY; 2410 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 04-AUG-2002 (Rel. 7.07, Last updated, Version 1) XX DE Rice long terminal repeat SZ-61LTR. XX KW Long terminal repeat; RIRE9LTR; SZ-10; SZ-61LTR; retrotransposon. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-2410 RA Jiang N. and Wessler R.S.; RT "SZ-61LTR: LTR from Oryza sativa."; RL Repbase Reports 2(7), 116-116 (2002). XX DR [1] (Consensus) XX CC Related to SZ-10 and RIRE9LTR. XX SQ Sequence 2410 BP; 776 A; 561 C; 428 G; 645 T; 0 other; tgaaaggacc ttgatgtcgc ctagaggttg ggtgaatagg cgttcctaaa aattatcaca 60 acttcatagc atatcagagt gatgataact tttgattcaa atcgaaactt ccggtatggg 120 attggaagtt ccggtctcaa tcgaaaagtt cggcggataa cggaataaac actagctatg 180 aacttgtagc tcaaacaaac aaaatgtata tgaatcaaaa ggtgacaaat aaggtatcta 240 agcaagatat aaggtcacct actaaatcaa ttaagcatgc aagtagatca ggtaaaaaca 300 agctcaagca caatatgaga gaatgcaaga acgggcaaac caagagggga gatgcgtgat 360 ttgtttcccg aagttcggat ccacggatcc tacgtctccg ttgaggagcc acaagggcca 420 ggcctatttc aaccctttcc tcacgagggt gcacaaatgc actcctcggt ttcactattg 480 atttcttccc ttgcggaggc gaaatcgaag ccttcacaaa ctttccatgg cacaccacaa 540 ccttgggtgc tcaccggcaa cgcctagccg tctaggagac cttagtctcc aagagtaaca 600 aacacaatcg aagatttgct tgctatgaac tcgagtgctc aaagtatgga gtgaagctca 660 ctagctctca acttctcaat cactcaatcc aactctttcc ccttctcaaa tccctctcac 720 aaagaggcac acaaaggatg gagtgaagct cactagctct caactcctca ctctctcaat 780 ccaactctct ccccttctca aatccccctc acaaagaggc accacaaagg tagggaaatg 840 gggatggcta tttggctttg gatgtgtcta atactcccca agagcagcag cccctcaaaa 900 gaggggtgga ggagtttata tacccgagcc cctcaaaaac tagccgttgg aggccaagac 960 tgtaattttt ggagtttccg aaaagcattt tcggacaagt ccgaaaactt acagaagcaa 1020 atctcatatt cgcagccact ttcggaatgt ccgaaaattt tcggagtttc cggtaatttt 1080 tcggactttc cgaaaagcac agagtaaaac gactataact tttcactcgg gagtccgttt 1140 tcgatgaact tggactctat agaaagctca ctcagaggac tacccaactc aaccaaaaac 1200 aaggtctaaa accactcaaa ggataggtta aagcttgggc ttctctcaag gtagcactat 1260 gataggtcac tttgagcacc gagacataca caaacacctc gacgttgcat ccctcttaat 1320 agtacggcat tcctaaactc aaatgtaaat aagaagataa ttataccatt aggaatgcct 1380 ttttttcatc cttctttcat tgtctagagg gacgccaatg ccgataccgt ttcaccatat 1440 attcttcaaa tgattgatgc ggttacttgt agcttcaaat ggtctctcac ggtccatcat 1500 gacaaagccg tcactcgccc tttaccacca ccggatttgg tccttcggcg ccaagcccct 1560 tgcttgccct tcaccgccgc atggtccatc gcgaccgagc atcgcttgcc cttcaccatc 1620 ttgccataat agccacttcg tatcacacat cttcaatatc ttcactttgt cattcttggt 1680 attgttaggt gtaatgatat cacttgagca tcaacacctt tgtaatcctt gggacctatt 1740 tctttcattc aactcaataa aattattagt cccaatgatc cggttgtcaa cctccacatg 1800 ttgaccaacc gatcgcatgt ataaaaggat atgaataaat gatgagtatt aatcaacacc 1860 acaagtgtca tatactcaaa tatatgttca aatgtaaaga tcccaattaa atgaaggtga 1920 ataacttgga ttgattacat gcataactaa agtataggat ttgctccccc taaatgtatg 1980 catacaaaat atttgtgtga agcaagagca tgcataacaa gatattaaac attgagagct 2040 tatcctatac aagaatagaa ggcatttctc aaatatagat attaaaataa aaatatacct 2100 tcatcatctc cacgttctca atgtaaatag actaaataag agataatact caaacaaaac 2160 attagtctca catgcatatg ccaatcacgt ggaaatatta tatacgaaca tatcaatatg 2220 tacatgaaga gaaagagtga tacatatagc ttgatctcca tgcatttcat ccttgtgatt 2280 taggtccacc aacactccaa tttcatatcc acatgagaat aggcaaagaa atgcttataa 2340 aaacattagt ctcacataat tggatttgtt attaatcatc aaaaccaaat caatgtcact 2400 tgaactttca 2410 // ID RETRO2_I repbase; DNA; ORY; 10690 BP. XX AC . XX DT 19-MAY-2005 (Rel. 10.05, Created) DT 23-AUG-2005 (Rel. 10.05, Last updated, Version 2) XX DE Internal portion of gypsy-like LTR retrotransposon - a consensus DE sequence. XX KW Gypsy; LTR Retrotransposon; Transposable Element; RETRO1; KW RETRO2_I. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-10690 RA Jurka J.; RT "Gypsy2: A consensus sequence of gypsy-like LTR retrotransposon RT from rice."; RL Direct Submission to Repbase Update (19-MAY-2005). XX DR [1] (Consensus) XX CC This element is highly similar to RETRO1 element over the first CC ~6kb region. The remaining 4.5kb of the sequence has no CC counterpart in RETRO1. It contains extra putative proteins on the CC complementary strand. XX FH Key Location/Qualifiers FT CDS join(34..1710,1709..2509,2513..6238) FT /product="RETRO2_I_1p" FT /translation="FSELSYSFVCAKLLLFSPMAEPAKAHDLSPSVSGDDG FT EPNPRRRARTPPPPPRQSPRREEALERVERSATSPSAGDGEGRRDGERRLL FT VYGDGSTPQGALQAAGALLRHPPVVPDPESPAQRWLDDVANLVMTAQQRLG FT AGGRSSATKASGAATTGSVSSRRRARRAAAVARHSAATPSSTPPTREDLRG FT GPDARLNIERRRNGRRAAHATEGASSSRVSPRHGRGDQPSVPPVGGVGCRA FT FVASLRNVRWPPRFRPTITEKYDGSVNPAEFLQVYTTGIEAAGGDDRVMAN FT FFPMALKGQARGWLMNLPPASVHSWEDLCQQFTMNFQGTYPRPGEEADLHA FT VQRGDDESLRSYIQRFCQVRNTIPCIPAHAVIYAFRGVCGTTACSKRSPPK FT SPRLPRSFFSSRTEWLVRRRHGPGTPPVPVWQLRPPPGPPLRQGGVTGGGR FT RGRPIPTTRVMSSPSRALRGPPERGGLRATKRKRPALPAGSAQPASGAPST FT TPPSTTSRTAAQSKVWLSGRGSGRRRGGRSAVRASPRRFLPAIGEVRPSRR FT PPPRTSMMAMMTPRFPGAWGHHCHRRWGACAHVSRRSLKAMKRELLAAAPT FT HEATRRARWSEVALTFDQTDHPPCVARGGQIAMVVSPTVCNVKLGRVLIDG FT GAALNILSPAAFDAIKAPGMVLRPSQPIIGVTPGHTWPLGHIDLPVTFGGS FT ANFRTERVNFDVADLSLPYNAVLGRPALVKFMAAVHYAYLQMKMPGPGGPI FT SVHGDLKVALACMEQRADHLAAASKPEGGDERLGTSAPAAPRQRIVTCDEV FT PVKEVALGDGPSKTTRIGGLLDGKEDALVSFLRANADVFAWRPADMPGVPR FT EVIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPE FT WLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLL FT CFLDAYSGYHQIRMAREDEEKTAFITPIGTYCYTTMPFGLKNAGPTFQRTT FT RISLGSQLGRNVEAYVDDLVVKTRNQETLLSDLAETFESLRSARIKLNPDK FT CVFGVPAGKLLGFLVSARGIEANPEKIRAIERMRPPSKLRDVQCVTGCMAA FT LSRFISRLGEKALPLFKLLKRSGPFTWTEEAERALTQLKAYLSSPPVLVAP FT EPNEPLLLYLAATPQVVSAALVVERDEDNPHSAHPHPVLTWPGREQGGEAP FT EPNGGPRPPTTGAGPLPACQTVPGAPDPQDGPEATAGRPRLSPSDLEANPV FT PIRPGREQGEEAPEPNGGLRLLTTGVGPLPACPTTPGAPDPQDGPEATVGR FT PPLSTSDPEVVGTEDECAPRGRLDEERPGDAAPGEEDRPRRKVQRPVYFVS FT EALRDAKTRYPQAQKMLYAILMASRKLRHYFQAHRVTVVTSYPLGQILHNR FT EGTGRVVKWAIELSEFDLHFEPRHAIKSQALADFVAEWTPAPEPVSIPEAS FT SDPSQLPHTAHWVMQFDGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATN FT NMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYV FT RQVRRMERHFDGIELRHVPRRDNMMADELSRLASSRAQTPPGAFEERLAQP FT SARPDPIGETDAPDRPPRPVGVQASGPEGSAPSSLRLIAWIAEIQAYLTDK FT TLPEDREGSERVHRISKRYVLVEGTLYRRAANGILLKCIPREQGVELLADI FT HEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRRCRACQFHAKQIHQ FT PAQALQTIPLSWPFAVWGLDILGPFRRAPGGFEYLYVAIDKFTKWPEAYPV FT VKIDKHSALKFIKGITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCF FT ASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRT FT TPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDDLDYL FT EERRRRAALRAARYQQSLRRYHQRHVRARSLCVDDLVLRRVQTRAGLSKLS FT PMWEGPYRVIGVPRPGSIRLATGDGTELPNPWNIEHLRRFYP" XX SQ Sequence 10690 BP; 1937 A; 3499 C; 3354 G; 1900 T; 0 other; tctggcgcgc caggtagggg actctgcgtg tgattttctg agctctcgta ctctttcgtg 60 tgcgccaagc ttctcctgtt cagcccaatg gccgagccag caaaggcgca cgacctctct 120 ccgagtgtga gcggtgacga cggggagcca aacccacgcc gtcgagctcg tactccaccg 180 ccccctccac gccaaagtcc taggcgggag gaggcgctcg agagggtcga aagatccgcg 240 acttcgccat ccgcgggaga tggagaagga cggcgagatg gggagcgtcg cctcctcgtc 300 tacggcgacg gcagcacgcc ccagggcgcg ctccaggctg caggcgcgct cctacgtcac 360 ccgcccgtcg tccctgaccc ggagtctcca gcccaacgtt ggctggacga cgtggccaac 420 ttggtcatga cggcacagca gcgcctaggt gctggtgggc ggtcctccgc caccaaggcc 480 tctggcgctg ctaccaccgg ctccgtgtcg tcaaggcgga gggcgcggcg agcggcggct 540 gttgctcgcc attcggccgc cactccctcg tcgactcctc cgacccggga agatctgcgt 600 ggggggccgg atgcccgcct caacatcgag cgccggcgta atggccgacg tgctgcccac 660 gcaacggagg gcgcttcctc gtccagagtg tcacctcgac acggacgcgg ggaccagccc 720 tccgtgcccc cggttggtgg tgtcggctgt agagcctttg tggcgagtct tcggaatgtc 780 cgttggcccc caaggttccg gcccaccatc accgaaaaat atgacgggag cgtcaacccc 840 gccgagtttc tccaggtcta tacgaccggg attgaggccg ccgggggtga cgacagggtc 900 atggcgaatt tctttcccat ggccctgaaa ggacaggcgc ggggttggct aatgaacttg 960 ccacccgcgt cggtccactc ttgggaggat ttgtgccaac agttcaccat gaacttccaa 1020 ggcacatatc cacgcccagg tgaagaagcg gacttgcacg cagtacagcg aggggatgat 1080 gagtcacttc gctcgtacat tcagcggttc tgtcaagtcc gtaataccat accatgcatc 1140 cctgcacacg cggtgatcta cgcgttcagg ggggtgtgcg gcacaaccgc atgctcgaaa 1200 agatcgcctc caaagagccc cagactaccg cggagctttt tcagctcgcg gaccgagtgg 1260 ctcgtaagga ggaggcatgg acctggaacc cctccggttc cggtgtggca gcttcggccg 1320 cccccgggtc cgccgctcag acagggcggc gtgacaggag gaggaagaag aggtcggccc 1380 attccgacga cgagggtcat gtcctcgccg tcgagggcgc tccgcgggcc acccgaaagg 1440 ggaggcctgc gagcgacaaa aagaaagagg ccggcgctcc cagcagggag cgcccaaccg 1500 gcaagtggtg ctccgtccac aacacctccc tccacgacct cgcggactgc cgcgcagtca 1560 aaagtttggc tgagcggacg aggaagtggg aggaggagag gaggcaggag cgccgtgagg 1620 gcaagtcccc ggcggttcct tccggcaatc ggcgaagtga ggccaagcag aaggcccccg 1680 ccgaggacat cgatgatggc gatgatgacc taggtttcca ggagcctggg gccaccattg 1740 ccaccgtcga tggggagcgt gtgctcacgt ttctcgccgg agcctcaagg ccatgaagcg 1800 agagcttctg gccgcggccc ctactcatga ggcgacgcgc cgggcgcggt ggtcggaggt 1860 tgccctcacc tttgaccaga ccgaccaccc accgtgcgtt gcccggggag gacagatcgc 1920 gatggtggtt tcccccaccg tttgcaacgt gaagttgggg cgtgtcctca tagatggagg 1980 agcagccctc aacatccttt cccccgcagc ctttgacgcc atcaaggccc cggggatggt 2040 gctccggccg tcccagccga tcatcggtgt gacgccgggg cacacttggc cgctaggtca 2100 tatcgacctc ccggtcacct tcggtggatc cgccaacttc cgcacggagc gggtgaactt 2160 cgatgtggcg gacctcagtc tgccctacaa cgcggtcctg gggaggcccg cgttggtgaa 2220 gttcatggcg gcggtccact acgcctacct ccagatgaag atgccgggcc ccggtggccc 2280 catctctgtc catggcgacc tcaaagtcgc gcttgcttgt atggagcagc gcgcggacca 2340 cctcgccgcc gcgtccaagc ccgagggtgg cgacgagagg cttggcacct ccgcccccgc 2400 cgccccgagg cagcggatag tcacgtgcga cgaggtcccg gtcaaggagg ttgccctggg 2460 cgacggcccg tccaagacca cacggatcgg tggtcttctg gacggcaaat aggaagacgc 2520 gctcgtctcc ttcctgcggg caaacgctga cgtcttcgca tggagaccgg cggatatgcc 2580 cggggtcccc agggaggtga ttgagcaccg tctcgccgtg cggccgggcg caaggccggt 2640 ccggcagaaa gtgcggcggc aggccccgga acgtcaagcc ttcatccgcg aggaggtggc 2700 gcgacttctg gaggccggat tcatccgtga ggtcatccat ccggagtggc tggcgaaccc 2760 ggtggtcgtc cccaaggcga acggcaagct tcggatgtgc atcgactaca ccgaccttaa 2820 caaggcatgt cctaaggacc cttaccccct gcctcgcata gatcagattg tcgactccac 2880 cgcggggtgc gaccttttgt gttttctaga tgcatactct ggttaccatc agattcgcat 2940 ggctagggag gatgaggaaa aaactgcgtt cattaccccc ataggaactt attgttatac 3000 aacaatgccc ttcgggttaa agaatgcagg tcctactttt caacgtacta ctcgaatttc 3060 tttgggtagc caattaggac gtaatgttga ggcttatgtc gatgacttgg ttgtaaagac 3120 gcgcaaccaa gagacgttac tctcagatct agcggaaact tttgaaagtc tccgctccgc 3180 ccgcataaaa ctgaaccccg ataagtgcgt gttcggtgtg cctgcgggca agcttctcgg 3240 gttcttggtc tctgcccgag gcatcgaggc caaccccgag aagatacgag ctatagagcg 3300 gatgcgcccc cccagcaagc ttagggatgt gcagtgcgtc accggttgca tggccgccct 3360 aagtcgcttc atatcgaggc tgggagagaa ggcgctaccc ttatttaagc tcctcaaacg 3420 ctccgggccg tttacttgga cggaggaagc tgaacgtgcc ctcactcagt tgaaggcata 3480 tctcagctct cccccggttc tggtcgcccc ggagccaaat gagcccttgc tactctactt 3540 agcggcgacc ccgcaagtgg ttagtgcggc gttggtcgtg gagcgcgatg aggacaatcc 3600 tcattccgcg cacccccacc ctgtgctgac ttggcccggg agagagcagg gaggagaggc 3660 ccccgagccg aacggtggcc caaggccccc gacgaccgga gcaggccctc tgcccgcttg 3720 tcagacggtg ccaggtgccc ccgaccccca ggacggcccc gaggccactg cgggaaggcc 3780 gcgcctatcg ccctctgacc tcgaggctaa ccctgtgccg attcgacccg ggagagagca 3840 gggagaagag gcccccgagc cgaacggtgg cctaaggctc ctgacgaccg gagttggccc 3900 tttgcccgct tgtccgacga cgccaggagc ccccgacccc caggacggcc ccgaggccac 3960 tgtgggaagg ccgcccctgt cgacctccga ccccgaggtc gtcggcacag aagacgagtg 4020 cgccccgcga ggccgcttgg acgaagagcg ccccggggat gcggcccctg gcgaagagga 4080 tcggccccgc cgaaaggtgc agcggcccgt ctactttgtt agtgaggccc tccgggacgc 4140 caagacccga taccctcagg cccagaagat gctttacgct attctgatgg cctcgaggaa 4200 actgcgccat tatttccagg cgcatcgggt cacggtggtt acgtcttacc ccctcggcca 4260 aatcttgcat aatcgagagg gtactggacg agtggtgaaa tgggcaatcg aactttctga 4320 gttcgatttg cactttgaac cacgccacgc tatcaagagc caggccctcg ccgattttgt 4380 ggcagagtgg accccggctc ccgagcccgt ctcgatcccc gaggccagct cggacccctc 4440 gcagctgcct cacaccgccc actgggtgat gcagttcgac ggctccctgt ctcttcaggg 4500 cgccggtgcg ggggtcacgt tgacctctcc gagcggagac gtcctcagat acttggtccg 4560 cctcgacttt cgagcgacca ataatatggc agagtacgag ggactccttg ccggactcag 4620 agtggcagct ggactgggga tccgccgcct cctggtgtta ggcgactccc agctggttgt 4680 taaccaagtc tgtaaggagt accggtgctc tgacccgcag atggacgcct acgtgcgcca 4740 agtacggcgt atggagcgcc attttgacgg gattgagctt cggcacgtgc ccagacggga 4800 taacatgatg gccgacgaac tctcacggct cgcgtcctcg cgagcccaga ccccaccggg 4860 cgcctttgaa gaaaggcttg cccagccgtc ggcgcgaccc gaccccatag gggagacgga 4920 tgcgcctgac cggcccccga ggcccgtcgg agtccaggcc tcgggacccg aggggagcgc 4980 tcccagctcc cttagattga ttgcttggat cgctgagatc caagcatacc tcacagataa 5040 gactctaccc gaggaccgcg aagggagtga acgcgtccat cgcatctcca aacgctacgt 5100 gctggtagaa gggaccctct atcggcgcgc ggctaacgga atcctcctga agtgcattcc 5160 tcgggaacaa ggcgttgagc ttcttgccga tatccatgaa ggcgaatgcg gagcccactc 5220 cgcctcgcgc accttggttg gcaaggcctt tcgccagggt ttctattggc cgacagctct 5280 caatgatgcg gtcgacctgg tccggcgatg cagagcgtgt cagttccacg ccaagcaaat 5340 ccatcagccg gcccaggccc tgcagaccat accactttcg tggccatttg ctgtctgggg 5400 gctcgatatc ctgggaccgt ttaggcgggc cccgggcggg tttgagtatc tgtatgtcgc 5460 gatcgacaag ttcactaagt ggcccgaggc ttatccggtc gtcaagatcg ataagcactc 5520 cgcacttaaa ttcattaagg gcatcacggc ccggtttgga gtgcctaacc gtattattac 5580 ggataatggc acccaattca ctagtgaact cttcggcgac tactgcgaag acatgggcat 5640 caagctctgc ttcgcctcac ctgcccaccc cagaagcaat ggccaagtgg agcgcgccaa 5700 tgcggaaatc ctcaaaggcc ttaaaaccaa gaccttcaac atactcaaga agcacggcga 5760 ttcatggatc gaggagttgc cagcggtgct ctgggcgaac cgaaccacac caagccgagc 5820 aaccggggaa acgcctttct tcctcgtcta cggcgcggaa gcggttctcc catccgagct 5880 caccctgagg tctcctcggg ccaccatgta ctgcgaggct gatcaagatc agcttcgcag 5940 agatgacctc gactacttgg aagagcgaag gcggcgcgcg gccctccgag ccgcgcgcta 6000 ccagcagagc ctgcggcgct accatcagcg ccacgtccgg gcccgatcac tctgcgtcga 6060 cgacctcgtc ctacgccgcg tccaaacgcg tgctggattg agcaagctct caccaatgtg 6120 ggagggtccg tatcgagtga tcggcgtccc ccggccgggc tccatacggc tggccacggg 6180 cgacggcact gagctgccta acccgtggaa catcgaacac cttcgtcgct tctacccctg 6240 agggggggtc gggtgtcagg tttcgggctc gggccaaccc cgcaccccct cgggcgtgca 6300 gggttggccg ggggctacca cacatgcact ttcttatttc tcttatttca gtatttcaat 6360 aaaagcagtt tcaatttcct aaaggctgtg tctgtgccgt tttttccttt tgaagaatct 6420 tgacttgaaa taggtcactc gtgctcaatc ctgccctcgg gggctcgggt cggctaaaat 6480 cgccaaacgg ggcccagaac cgagccgtgc cccggggcgt ggtgaactcc gggggggaat 6540 cggcaaaaac ccacaatcgg gtcacccata accctcggtc accacgttcc cggcctggcc 6600 agtctcgaca tgtggatctc cccaggcact agccccgacc cgcgcctttt gaggactggg 6660 acctgtgcac gagcccttaa tcaagctaag acacaaaagg accacggcac agatcatcct 6720 catctcatac tcacagcaag ataaaattaa cacagaaatt tcttcatttt tgattacaga 6780 ttaagttgat ctatacaaaa aagaggcccg aaggccttag aaaaagaaaa agaaaaaact 6840 gaagattggc gggggcctgg gggctcattc cgatgcgccc gggtcgccgg cctcgtcgcc 6900 actgtcgtcc gcaccaccgg catcgccctc ctcgtcggag ttgggggcga acgcgagccg 6960 aggggccgag ccctcgaagc tgtggacgat gtggtcggcg gcatcccgga cctcggtccc 7020 gggagggaac tcatccagcg ccatccatgg ggagaagtcg gggtccctgg cctggtaact 7080 cgccaggacg agctccaccg ctccttgggc gaggtccctc gaggatgact tgattgtctt 7140 ctcgagctcc tcggggagcc gttggagagc cccggccatc ttcgagaggc gctgggcgag 7200 gcctccctgg ttggcggcgt actttacggt ccgccctctc cagaggcccg cttgccgacc 7260 ggcgcgatct aggcgggaga cggcatccca aagcatgccg ggccctacct cgcccgccaa 7320 gcggagggct tcgacctccc cggcggacga gtccagcgcg ccctgcagat cggcgatggt 7380 gtgttcggca gctgcgaggc gggcggctac gtcgctttcg cccgcggccg ccccgccgct 7440 gcgcgccctc gcgtccagct ccttcgcccg cgcctcgagc tcagcggccc actggtccag 7500 tgcggccctc tcggcgcggg cgccttccag attacggcgc gcctgctcct cctgcgctgc 7560 ctcgcggagg gacaggctgt ccgccagccg ttgcgccgcg gcctcggcct cctcgagagc 7620 tcgctcccgc tcggtgagcg cgtcctcgcg gaggcggagc gcggactcct cttcggcgca 7680 ggcggcctcg tgcgccgcca gcgttgcctc ccggatggcg acggcggcct cgcggtccgc 7740 caggtccctc tccacgacgc aggcgcgctc ttccagcgcc atggcgcgcg cctcaagggc 7800 ctcttcgcgc cgccgggacg ccgcttcggt ctccgccgcc cgctgttctc gggcagcggc 7860 ggcgtcaagg accccctggg cggcgtcgag cttcttctct agctccgcct cccagctccc 7920 gtattgaagg cggagggtgt cctgcgcctc gttcatcacg gtggtggcga tgagggcagc 7980 ctcccgctcc tcctccacct ccctggcgat ctccgccagc accttcttac gggcttcaag 8040 ctccgagatg tgccggcggt gagccttacg gcccacctcc accatggcct ccaccgagcg 8100 tcgcccctct tcgacgcgcg cccacgcggc gtcgagctcc gcccgctctg cctgcagggc 8160 ctccacctgg gcacttaacc catccaacac cgtggtgttt gcggcggcca aggcctgcag 8220 aaggggctct gcgctcagtg gggcggtaga aggcgtgggg aagagccgcc ttggagagga 8280 tgccacgcgg ctcggcccgc cgatggacgt gccggactcg gggatgtccc ccggacccgg 8340 ttggtcctga gcgtcgcccg agggagcggg cccaagcgat gcgcccgcag cctcgtcgcg 8400 agctgccccg gaagttgtcg cctgagcgtc gcccgaggga gtgggcccaa gcgacgcgcc 8460 cgcggcctcg tcgcgagctg cctcggaagt cgccaacatc tcgtcctggc gggctcgggc 8520 ggcctcctcc cgaacggctt cctcggcctg gcgggcccgg gcggcctcct cccgagcgat 8580 ttcctcggcc tggcgagccc gggcggcctc ctgggcggcc tcctcggctt cccgaaggcg 8640 atccgcggcc tctcgccggt cagattcccg cctccgggcc tctgcggccg ccggatcctc 8700 ggcctcagac tggccggact tggaatggcg ggagggacgc gacgggatct cgctgaagca 8760 gaagaaaaga ccagaagaca aacgagatgg gtgagtgaaa acttgcgttg ggagaatgaa 8820 tacggccgcg atgggcgaga gacgaacctg cgagggggtc ggttaaacga ccaccttgga 8880 ggggaaatga ggtttccccg ggatggttct gtctccccca tcttgcggag ccacttcttc 8940 ttgcgctccc cctcgggctg cgatgtcggc gcggccccct ccgggcgcct gctgctggca 9000 cgcgccgccc cgccccctcg gggaggagat gggggaggtg ttcctccctg cttcctcttc 9060 ccccgggcgt cggcagggcg gctgctcccc gggcccccgt cgcggggccc agaagcacga 9120 ccccctcctg gggtagattg ttccccccgg cggctcccgc ctgcgccgtc gtggccctta 9180 ggagcccgct cctctgaggc cccgaccgcc atcatgatgg tcaggatgga ggcgcggtct 9240 ggatcgctgc agagggggag gattccttga ggaatgaggg acgcctccac ggagctgaga 9300 ttcagcaccc gttggaccac tatcttgaag tcctcaggag cccagtccca tctgactccc 9360 tggtgggtcc tcatgtagtc ctcggacccg gtgtactccc aggcgccccg ggcgcgccgc 9420 tggagcggcg caatccggcg acggaggtag tcgccgtaca ccatggcccc tgtgagcccc 9480 tgggatcgca ggcccgccag gcggtcgagg acggcgtcat agccatcccc cagatctacc 9540 ggcgcccgcc agctggaggc ctgcgccggg ggctggctcg gaagtcggag gcgcgcttcg 9600 tcggcaaggg gggtgtagaa ccagtcgctc ttccagtcgt cccacttctt gcggagggcg 9660 caggggatgt agcggttcag caccggcccc cgcggctgga agtagcagcc accgactacc 9720 gatggcggcg acaccgactg cacggtgaag aaccaccgga acagccgaag agatgggcgc 9780 accccaatga acatctcgca caggtgcgcg aagatggcca atgtcatcac cgcgttgggg 9840 gtgaggtgcg ccatctggag atcgtagaac tccagaacat ccatgaagaa agaagaaaat 9900 ggcggaacca gccctgccat tgcgaagggg aggaagaaga cggaccgccc cgggtagtct 9960 ggcgccgggc gtccctcgcc cagcgtgact atctcccggc cggtggcaga ttccggcatg 10020 aagcggcgcg gcagcccagc ctgcctctcg ctcacgatgc gggaaggcgg cagcacgcta 10080 ccatcgagca gagcggagcc ccgtgccatg gcgccggaag gaagagaaga ttgagagcga 10140 gtgcgtgtgg cgaaggtagg gcacaggaaa gaaagagtta gggcgcaagc ggcgaaggca 10200 aggggaataa tggcgaaagg aaggaaacaa atcccttcct cagtgccttt atacccttgc 10260 caacgctgtg cccggctcct cgtttctcgc gcccactgtt tcgccccctc gtttctcgcg 10320 cccacgcttc cactaatccc attcgcccgc ttgcggcgca tgaggtggat atgcggttgt 10380 ggcagtcgag atagatcata tcgtgcgcgc gttaattacg ctcgccgacc aaagcgacgt 10440 taccatatct ccagacgaaa cgaatcggca cgtccagatt cgtgcgctac tcgagtaatg 10500 tggcagtctt gaagagaccg ctcattattg acggccgagt taccattgcc gatgtgcgtg 10560 atttgtgacc gttgggtttc tgcccaattg tggagaccgg tcccacctgt caccaggcct 10620 taggagtggc gtcacgcccg accgcttccc ttgaggaggg cgatcgccct ggcataacgc 10680 cgggggctac 10690 // ID SEVERIN-2 repbase; DNA; ORY; 1952 BP. XX AC . XX DT 13-SEP-2002 (Rel. 7.08, Created) DT 04-DEC-2009 (Rel. 7.08, Last updated, Version 2) XX DE Rice putative non-autonomous DNA transposon SEVERIN-2. XX KW Helitron; DNA transposon; Transposable Element; Nonautonomous; KW SEVERIN-2. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-1952 RA Jiang N. and Wessler R.S.; RT "SEVERIN-2: a putative non-autonomous DNA transposon from Oryza RT sativa."; RL Repbase Reports 2(8), 44-44 (2002). XX RN [2] RP 1-1952 RA Bao W.; RT "SEVERIN-2 is an non-autonomous helitron from rice."; RL Direct Submission to Repbase Update (04-DEC-2009). XX DR [2] (Consensus) XX CC The element is an non-autonomous helitron. XX SQ Sequence 1952 BP; 690 A; 375 C; 199 G; 688 T; 0 other; tctattatat actaaaagtc cattaaactt cctacaaacg ctctcaatcc gccacatgtc 60 actcctacaa acactcctag accgccacat gacactatat aatctcacca tcgattttca 120 cttaaattgg tggacccgat attttagacc attggattag atctattatt taagaaagta 180 atccattcct ttgctgtggg ccagaaaaag aaaaaaaaac atacgtacat acgtgtggct 240 tcgtataacc atgggccgga aaaagaaaaa accataagaa cgtagtacgc tctccctgtc 300 tctttctctt cctattcttt tatatctcta tctctttctc ttcctaatta ttttatgtta 360 tcaaatttaa aacgagttaa gttgatcata atttaaatgt acatagctaa tttatattct 420 attaaaacgt tgctctattt ataattaaat tgacaatttt acatccaata ttttgctata 480 tataagcaat atgttattgt ggtatagacg gtgcattttg caagtttgca tgccatctaa 540 ataaattaaa tacttattaa caacatataa tatatctatc tatctattat tatatactaa 600 aagttcatta aacttcctat aaacactctt aaattgccac gtgagagtcc tataaacact 660 cctaagccac tacgtggcac tctaataaat tagaaaaaat atataacttg aactggtggc 720 ccaattggat ctcataaaaa aatcattcct caaccactac cgtacgttct catttccttc 780 ccctcaatcc cttctcctca tctctttcct ttttttctct atggtagtta atatttttgt 840 tttattactt aataattaat ttcttcactt ctatctcacg agaatggctg tggattcttg 900 attgcatgtc ccatgcctaa atatataaat gattaatgat ctgatgcatg cttttataaa 960 tgacaaatct atttttaact aacaatttag aaaaaagata atagttacat agcaaaataa 1020 tcataatatt aaaaatttat atctgttttt gtttagttta tttgaacggt tgtttcataa 1080 ttagacagct aaataattta aaatcaatat taccaatatt tcactataaa aataaaatat 1140 gttatttgaa ctaccaccta ttctttacct gacaacccaa ataacatcct atttttaatt 1200 tatttgaacc gttgatttat gttactcata ttttactatg taaaatttaa aatacgtaat 1260 ttgaacatag accaacaagc aaacaacact gaaacattaa aaaattgaca atatgtatta 1320 tgtcatctta atcattctac ataataaaaa ttagaaaaat acaaagtcat catgtatgac 1380 cttttagaga catgttaaat taccaagtgt cacattttaa aaattagtaa aatcttatat 1440 attaaaagaa aaaaacatct agctaacagt tttcacctag atcgatgacc tattaacatt 1500 attttcagct atataatcta cttttagaaa aatatatctt gataagtagc atgtcacatc 1560 ttttaaaaat tttttgcaaa tcttaggaaa attacattta ataattagct ttcacttaat 1620 cacttagaaa aattaaaaaa aaaaatcccc tccacacgcg ctcatcacta cacacccgct 1680 ccttcccctc tctggctcaa gctctacact tttcattcct cttacgttcc tatttaacta 1740 aaatataaat aatctataat tataagtttc acgtttgatt tctaatctga ctattgctct 1800 gtttataatc aaaccaacga tataagatcc atatgcctat agtttactat ataacaaata 1860 cgacatttta acacaatcgg cctattactt acgagtatct caaatgcagc ctacgataca 1920 tgctcgcgcg aatgcgcggg ctaccttcct ag 1952 // ID RBTVL_LTR repbase; DNA; ORY; 979 BP. XX AC AE017121; XX DT 04-AUG-2005 (Rel. 10.07, Created) DT 24-AUG-2005 (Rel. 10.07, Last updated, Version 3) XX DE Rice tungro bacilliform endogenous badnavirus like repeat (long DE terminal repeat). XX KW Caulimoviridae; Integrated Virus; LTR; reverse transcriptase; KW RBTVL_LTR; endogenous badnavirus. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-979 RA Kunii M., Kanda M., Nagano H., Uyeda I., Kishima Y. and Sano Y.; RT "Reconstruction of putative DNA virus from endogenous rice tungro RT bacilliform virus-like sequences in the rice genome: implications RT for integration and evolution."; RL BMC Genomics 5(1), (2004). XX RN [2] RP 1-979 RA Jurka J.; RT "A recent copy of LTR-retrotransposon related to Rice tungro RT bacilliform virus."; RL Direct Submission to Repbase Update (04-AUG-2005). XX DR Genbank; AE017121; Positions 203379 204357. XX CC LTRs are 99% identical. Present in multiple copies in the rice CC genome. XX SQ Sequence 979 BP; 312 A; 190 C; 226 G; 251 T; 0 other; tgggcgtgga agaagaaaaa aaacgaagat ttcagaagac tactcaagga ggaatccaga 60 agaaggaatc cagaaggaca ccctataagc ataaaggaac aatatagggt gcggtgaatg 120 acatatcact gtgaagagta aaactttcgg tgaaaaggcc tcgactttag ccagctcccg 180 tgaagataca gtagcgaaga gataagcagg aggcacaggc gacgccatcc ctggcctcta 240 taaaaggaga cgttggcctt cactccggag acacacaaca acaacgaaga caccattcag 300 agcaaagctt ccaagcgcgc tctcaccctc cattccaccg ttcttagtag tagtgacttt 360 agcctacctt gcatagtata ttgaagcaag gagttgtgta ataacgctgt gtaaggtaag 420 aacagcttgc ttgtacctac cttcgggttt cccgaaaggg aaaaccgtat gtaagcttat 480 ctgtttaata tgaagtaatt ttccttaagt attcctgcac gtttgttcta gacaagtgtt 540 tatgctaagg accctatagg agaaacctct tcggtttgtt ctcgttttta gcctgcatct 600 tgcataggcg tctggagaat cggtatccgt agagaagtgt tccctttggg tggaactgcc 660 tggggagacg ataaactctt agctagaaca agtgtgactt ggaatatctt gttaagttgc 720 ttctaaaaag atagataggt gaggcatacg gtgagtaccg agtaggactt tacatcatcc 780 gaagcaagct tctaaggctg tctaaatagg attcgccacc ctgcaaagat cctaaagtta 840 aaatatctct cgaagtgaac agtaatttaa acagtaaact gaatagtgtt tttgaatagt 900 aatcagccga ataaacagta aactgaatag tattcagccg aataaatagt gttttgaaca 960 gtgtatattg tctgaagca 979 // ID TRUNCATOR2_OS repbase; DNA; ORY; 2904 BP. XX AC . XX DT 29-MAR-2005 (Rel. 10.03, Created) DT 29-MAR-2005 (Rel. 10.03, Last updated, Version 1) XX DE Rice LTR sequence - a consensus. XX KW LTR; retrotransposon; TRUNCATOR2_OS. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-2904 RA Gentles A. and Jurka J.; RT "Rice TRUNCATOR2 LTR sequence."; RL Direct Submission to Repbase Update (29-MAR-2005). XX DR [1] (Consensus) XX CC Long LTR sequence from rice, most similar to TRUNCATOR (75% CC similarity). There are around 20 copies with similarity to the CC consensus above 93%. XX SQ Sequence 2904 BP; 968 A; 638 C; 638 G; 660 T; 0 other; tgtcacgccc ggaaattcac tagtaatttc cgaacttatt tgtgcataaa atcctcgtcc 60 aggaatcagc cgaggtacac aaactgacaa tttaatatac aaatccatca taataataac 120 gttacatact tacaaaagaa aagaaaacag cagcggaatt aacggtctag cgatggcttc 180 agctccactc ccacaggcag ctcaactggg gtataagcca aacgtcttct ccttctggat 240 cctttatctt caactgaggt tgattgatta ttgcaagaat gagcatatga catactcaac 300 aagccacaca gcaaatatgc aagtgcacaa ggataccaaa ggatggcata atataggctc 360 atttgcaaaa gcagcattta gcaaagcagt taagagtagt aaaacagtag agtaattaat 420 taaaaatttt aatcaacact gaacagcaca cccatgctgc acaggcccaa ccatcctgaa 480 caaccatacc cggctgtaca gatctaactc caaaccagga gctaagcaaa ttattaccag 540 gtataacatc cataattatt gtgagaggtg tgagactaat cacgaaaaac attgctcaac 600 ccgcccataa ccgcgggcac ggctattcga atagttttac tctggccaga ggtgtaccac 660 tgtacccaca agacacaacc ccacatcatg tcaccatgtg cctcaatacc accacggtac 720 ctcggaaagg agttgtgaca ataccccttg cacaacataa cccattacag cgcacctttc 780 ctggatcata atcaccccct tataaacaag gcatggactc cccagcgacc cccgtggact 840 tctcgccact tctcagtctg gcgcactata atgaatcacg ctatacaaaa gataaagccg 900 ttgcccacgc tggcttgtgg ttggcacgat aaatgtttca caacagtagc tcgcgaaccg 960 gtccttaatt gtcatgagca cgactctcaa aaccatgtgc tcacaaccca ccattatcaa 1020 gttttagttg gcaagtaatt aattaaccaa tcacgattaa ccatcgtgaa ctatcattaa 1080 gccatcctta aataatagtg agtcataagt tatcccaata gtgtgctaat gtttctaagc 1140 atggctaagc aatcataact aatatctagc tgaaccaata tataaagccc aactagtcaa 1200 gttataataa cccaaggtat caaggaataa agtaatcaat gcaaattggc cataacaaag 1260 gaataagttc acaccacccg gtgacattcg aaaataaatg cacagttgaa ataaatagag 1320 aatttaaata taggatcaac atgctcaaag gattgtgttt aggatctgtg tgacttgcct 1380 tgcaataatc ggtcttcaat taatcttctt gaacacttcc gacgcactca cgaaccttcg 1440 caacgacgga aacgacaagc taacacgcaa aacgaagaaa aagactaata aaaaccaaat 1500 aaacagtaca tataaagtaa acaaacatgt agatcatgat tttagatgaa tttagcaact 1560 tgaaccactc aaaaccgagt tacgatgatt tagttatgaa tttccgaaga tttaatctat 1620 tagaaaaaca ggaaaaagaa aaacgatgat gacgtcatga tgacctcatc aatggccgga 1680 ccaagatggc gacctcgccg gagattggat ggtcggctgc gactttggag gacatgtaca 1740 cgtagaggac gacgagacga acccaacggt actcaccctc gaaccaaacg acgaacgacg 1800 acggccggcg acgaggtcta gcggcggctc ggcttcggtc gacggcggcg acggggctcc 1860 ggtgaccggc ggctgcgggg agagggcggc cgagcttctc cacacctcgg cgcaccttac 1920 ggcggtgacg gcgaccggcg gcgacgacgg aggcggcggc gcgacgcgga tggagctcgg 1980 ccggcgacga cggcggggtg gagcacgtgg cggcggcgct acgaggcacg ggagaccacg 2040 ggagaggggg caaacgaaag aggaggacta gggggtccta tttatagcct tggattgaag 2100 agatcggact cctcccgcaa gaaatcgatc cgggaaatca aaaactcggt tttggagata 2160 aactcgaaaa cgagttcgat tcggataaga tactcaacga tttgctccga tttttggggg 2220 taaagataga ggaggataag aggaatattt cccctaaaac aattggagac ggagacgagg 2280 gatttggtcg gaattggagg cggaaaaggc acggccggct ggctcgggct ctgcctgcgg 2340 ctgctggagg atgaagagaa gccgacatgt aggttccact tttcggtggg ctgagaagga 2400 gaggagggcg gctcggctgg gccggctggg cgggcgcggc cggcaaggaa aagaagaaat 2460 gggccgaaaa cggcccaaac tgagaagagg gattttatta cttttccaat taaaataatc 2520 actgaaatga tctttgaatt gttaaaaata cttccaatgc tcaaataatt ccaagaaaaa 2580 tcttgaaaat acttggacac tcaaagtact taacaaaatt ataattagac catttaatga 2640 ttaatttaat atgtgggtaa ttactgaaat gctctttgta tgattaaaat taggaattga 2700 gctccgaaaa atccgagaaa attccagaga gtataattaa ccatggagaa tttaataaaa 2760 attaaatcca tccatgcttt atatttagga aattttattt cccacattta acttcacttg 2820 taaattaatg aacatttaat ataaattcta ttaataattt attaaataat ttataaatcc 2880 tgaaacgaaa atcaggatgt gaca 2904 // ID RIRE5-I_OS repbase; DNA; ORY; 4471 BP. XX AC AB105803; AB105803.1; GI:29027728; VERSION; XX DT 11-JUL-2003 (Rel. 8.06, Created) DT 11-JUL-2003 (Rel. 8.06, Last updated, Version 1) XX DE Oryza sativa retrotransposon RIRE5: internal sequence. XX KW Copia; LTR Retrotransposon; Transposable Element; ORF; RIRE5; KW RIRE5-I_OS; RIRE5-LTR_OS; internal sequence. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-4471 RA Ohtsubo H. and Ohtsubo E.; RT "Direct Submission."; RL Direct Submission to Repbase Update (13-MAR-2003)Hisako Ohtsubo, RL Institute of Molecular and Cellular Biosciences, The University RL of Tokyo, Section of Chromosome dynamics; Yayoi 1-1-1, Bunkyo-ku, RL Toukyo 1130032, Japan (E-mail:hohtsubo@ims.u-tokyo.ac.jp, RL Tel:81-3-5841-7854, Fax:81-3-5841-8484). XX DR Genbank; AB105803; Positions 996 5466. XX SQ Sequence 4471 BP; 1284 A; 834 C; 1155 G; 1198 T; 0 other; atccaaaaac ttgataggtc tttttcggta gttggctttg ctgcatcact aaaaccacat 60 gctttcgatg gttcaaatta taaaagatgg aaagcacgtg cacttttgtg gttgacggtg 120 atgcattgtt tctttgtctc acggggcaaa ccgagtgaac cgcctctctc tcctgaggag 180 gaagctaagt tcgaggctac ggattgcttg ttccgtggag cattgatcag tgtgctcgcc 240 gataatattg tggatgtgta tatgcacata ccttcaggga aggacatgtg ggatgctctt 300 gaggccaagt tcggggtttc cgacgccggc agcgagctgt atgtcatgga gcagttctat 360 gactacaaga tggtcgatga ccgttctgta gtggaacagg ctcatgagat tcagatgctg 420 gtaaaggaac ttgagaacaa ccactgcgag ttgccggaca agtttgtggc tggaggcatt 480 attgccaaat tgccaccttc ttggtcggac tttgctactt ctctaaaaca caagaggcaa 540 gagttcagtg ttactgatct cattggctct ttgggtattg aggagaaggc gagggcaaag 600 gacaaccggg gcaaaaagat cgagggaggt tctagcgcca atttggtgca gaagaagaac 660 cctcacgcat cccacaacaa caacaagaaa gtcaaacctg acgtcaaacc caaggctaca 720 accaatttta agaagaaagg caagggaaag gcaaaaggag attgctttgt gtgtggcaag 780 cctgggcatt gggccaagga ttgtcctgag cgcaaggaca agaagtctgc aaacatggtt 840 attagtgagg acggaggaac attggggtat ggtaaatttt tacctacagt tctctctgtc 900 tgtcactcac ctgattggtg ggttgatact ggtgctaata ttcatgtgtg tgcggacatt 960 tccctgtttt cttcttatca agtcgggaga ggttcctcct tgttgatggg aaacggatcg 1020 cttgcggctg ttcatggtgt tggtacggtc gatctgaagt ttacttcggg aaagatcgtg 1080 cagctgaaga acgtgcaaca tgtcccttca ataaagaaga atctagttag cggctctcta 1140 ctgtgtagag atggttttag acttgtgttt gaatccaata aatgtgtcgt atctaaatat 1200 ggaacgttta ttggaaaagg ttatgacagc ggaggtttgt ttcgcttttc cttggatgat 1260 atgtgtaata aagttgtgaa ccatgtaagc gatgatgatg atgagtccaa tgtgtggcat 1320 tcgcgacttt gtcatgtgaa ttttggttgt atgacacgct tagccaacat gagtttaatt 1380 ccaaaattca ctttagtcaa aggctctaag tgccatactt gtgttcaatc gaaacaacct 1440 cgcaagcctc acaaggcatc tgaggcgagg aatttggcac cactagaact tgttcattcc 1500 gatctgtgcg aaatgaacgg cgtgttgact aaagggggaa agaaatattt catgacactg 1560 atagatgatt gcactagatt ctgctatgtg tacctattga aaacaaagga tgaagcatta 1620 cattacttta agatctataa ggctgaggta gaaaaccaac tggaaaggaa aatcaaacgg 1680 ttgagatctg ataggggtgg agagtatttt tccaatgagt ttacttcttt ctgcgaagag 1740 tatggaatta ttcatgagag gacgcctccc tattcacccc agtcaaacgg ggtagccgaa 1800 agaaagaacc gcactctaac tgagatggtg aatgccatgt tagacactgc aggactttcc 1860 aaggaatggt ggggtgaggc aatattgact gcgtgtcatg tcctgaatag aattcctact 1920 aagcataagg aagtaacacc attcgaggaa tgggaaagga agaaattaaa tctctctcac 1980 ctgcgcacat ggggctgttt ggccaaggta aatgtaccta tagccaaaaa gcgtaaactt 2040 ggaccaaaga ccgtagattg tgtgttcctt ggttatgcta tccacagtgt gggatatagg 2100 ttcttaatag taaattctgg agtacccgac atgcgtgttg gtacaattac tgagtccaga 2160 gatgccacat tttttgagaa tgaatttcct atgaaaaatg cacctagcac ttctagtcaa 2220 gaacctattt tatcccctga gcactttgtg ccgatagaac acattgatca aacgcttgag 2280 gaaaatcctg aggaggataa cattgtagca actcgaaaga gtaagagaca aaggactgca 2340 aagtcttttg gagatgacta cattgtatat cttgtggatg atactccaag aaccattgaa 2400 gaggcatatt catctcctga cgctgactat tggaaggaag cggtacgcag tgagatggac 2460 tcaattatgt ctaatggtac ttgggaagtc gtcgagcgtc catatgggtg caagcctgta 2520 ggatgcaaat gggttttcaa gaaaaagctt aggcctgatg gtacaattga aaagtacaag 2580 gcaaggcttg tggccaaggg ttatacccaa aaagaaggcg aggatttttt cgacacttat 2640 tcaccggttg ctcgcttgac cacgattcga gtactactcg ctctggcagc ctctcatggt 2700 ctactcgtcc atcagatgga tgttaagaca gctttcctca atggagagtt ggaggaggag 2760 atctatatgg atcaaccaga tgggtatgta ctagaaggtc aggagggaat ggtgtgcaag 2820 ctgttgaagt ccttgtatgg tctcaaacaa gcgcctaagc aatggcatga gaagtttgac 2880 aatacactta catctgctgg ctttgttgtg aacgaagctg acaaatgtgt gtactatcgc 2940 tatggtgggg gagagggagt gatcttgtgt ttatatgtcg atgacatatt gatctttggg 3000 accagcctca atgtgattga ggaggtcaag gactttctgt ccaaaagctt tgaaatgaag 3060 gatttgggag tggctgatgt tattcttaac attaaactac tgagaggaga tgagggtggg 3120 attacacttg tgcaatctca ctatgtggac aaggtcttga gtcgctttgg ttatagtgac 3180 tgcaaggcag ctcctactcc ttatgatcct agtgtgctat taaggaaaaa ccgaagaata 3240 gcaagggatc aattgagata ctcccagatc attggttcat tgatgtactt agctagtgca 3300 acgaggcctg acatctcatt tgctgtgagc aagttgagcc agtttgtttc aaatccggga 3360 gatgatcatt ggcatgctct tgaaagagta atgcgctatc taaaagggac aatgagctat 3420 ggaattcact acgccgggta cccaaaagtg ctggagggct atagtgattc aaactggata 3480 tctgatgctg atgagataaa ggccacaagt gggtatgtgt tcacacttgg aggtggcgct 3540 gtttcctgga agtcttgcaa gcagaccatc ttaacgaggt caacaatgga agcagaactc 3600 acagctttag atactgccac agttgaggcc gaatggcttc gtgagctcct gatggacttg 3660 ccggtggttg aaaaaccagt accggcaatc ctgatgaact gtgataatca aacagtgatt 3720 attaaagtga acagttcgaa ggacaacatg aagtcatcca ggcatgttaa aagaagactg 3780 aagtctgtca gaaagcagaa aaactccgga gtgatagcat tggactatgt ccagacggct 3840 aaaaatctgg cagatcagtt taccaagggg ctaccacgta atgtgataga ctgtgcatcg 3900 agggagatgg gcttgagacc cacttagagt tgcacaatgg tggaaacctg tccattgtga 3960 tcggagatcc cgtgaatttg gatggcgaaa caaactattg tgtaactgag agaagagacc 4020 ctaaaatggg cttatcttca tgatgcactt ctcttctaat ctgtatggta ggatggtata 4080 caccttaatg tgatccgagt ggcttttcat aaagcagaga tgttggccta cagaacatct 4140 tagaaggaac acacctatat gagtccgact gctagtcaca gtctatgaga tctgggtgat 4200 ctctagatac tcatgaaaag gccaggagta tgacttatac gctccaaaca gaggggatgc 4260 aaacggcagc ctagtaccag ttaagggttt gagtgaaacc tgaatcgcac aagactgaca 4320 attcaaggca tagtccattg ttcagttgtg atctggtgta gctcttttcc taggtggaag 4380 ttcaacttaa cagtctccac cgaaacactg gtataacaaa caggatcaga atcgagagca 4440 tttcctgtga gccatgaaat ttggtgggga t 4471 // ID ATLANTYS-I_OS repbase; DNA; ORY; 10724 BP. XX AC . XX DT 06-DEC-2004 (Rel. 9.11, Created) DT 02-JUN-2005 (Rel. 9.11, Last updated, Version 2) XX DE Internal domain of rice ATLANTYS_OS gypsy-like endogenous DE retrovirus - a consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; ATLANTYS-I_OS; KW ATLANTYS-LTR_OS; Gypsy-like endogenous retrovirus; SZ-19LTR; gag; KW pol. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-10724 RA Gentles A. and Jurka J.; RT "ATLANTYS_OS, a rice Gypsy-like LTR retrotransposon."; RL Repbase Reports 4(11), 285-285 (2004). XX DR [1] (Consensus) XX CC ATLANTYS_OS is a Gypsy-type LTR retrotransposon from Oryza CC sativa. It has ~1500 bp LTRs, and a 5 bp target site CC duplication. There are approximately 30 full-length elements CC in the rice genome, with average similarity to the consensus CC of 90%; along with numerous fragments. ATLANTYS_OS is related CC (59% similarity) to the Arabidopsis thaliana elements CC ATLANTYS1 and ATLANTYS2. ATLANTYS_OS has weak similarity also to CC RETROSOR1 and RIRE2 from rice. A characteristic feature of CC these retroelements is that the normal env encoding domain is CC replaced by an ORF for a protein of unknown function on the CC opposite strand. The corresponding LTR is ATLANTYS-LTR_OS. CC gag-pol: CC MEFKVRVHGVQGDGAQGLQGGNLNQNSDAAQDFFNNFQDRVDYAVHHALINQSGVLVNTLSNMM CC KSIADGSIAEHQAAGPVYLQGGVFPNYRPLITDVQPSIQAVPPVAPSAQPTAPASTPLPAPSAL CC APGQLVNPRLLMREQPQHSGQVVNRLTQDQVAAMFLPPQPTVDPIQQQPIQQTPPIQQVVQPIQ CC QQVVQPVQQTPPRQQPLQPIQQTPLRQQIYGQFEPMQQQSQGAAQQRPWADVIADVMREQFGLK CC PKETGSLYRQPYPEWFERVPLPNRFKVPDFSKFSGQDAIKQRHDEPVHEYIQRFREMRNKCFSL CC SLTDAQLADLAFQGMIAPIREKFSSEDFDSLSHLIQKVTLHEHRSAEARKXSKKVNHVCPYMYG CC SDDDEDDSEIAAAEWVRSKKVIPCQWVKSSGKEEKYDFDITKADKIFDLLLREKQIQLPAGHTI CC PSAEELGKKRYCKWHNSGSHSTNDCKVFRQQIQVAIEGGKIKFDDSKKPMKVDGNPFPVNMVHT CC AGQTADRGRARGFQVNSAKIINKYQRKYDKQQEKHYEEDDDGFDPHWGSEFGIDQADVDEVEEE CC SAKLVLSPEQAVFEKPEGTENRHLKPLYINGYVNGKPMSKMMVDGGXAVNLMPYATFRKLGRNA CC EDLIKTNMVLKDFGGNPSETKGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIP CC STMHQCLIQWQGDKIEIVPADSQLKMENPSYYFEGVVEGSNVYTKDTVDDLDDKQGQGFMSADD CC LEEIDIGPGDRPRPTFISKNLSPEFRTKLIELLKEFRDCFAWEYYEMPGLSRSIVEHRLPIKPG CC VRPHQQPPRRCKADMLEPVXAEIKRLYDAGFIRPCRYAEWVSSIVPVIKKNGKVRVCIDFRDLN CC KATPKDEYPMPVADQLVDAASGNKILSFMDGNAGYNQIFMAEEDIHKTAFRCPGAIGLFEWVVM CC TFGLKSAGATYQRAMNYIYHDLIGWLVEVYIDDVVVKSKEIEDHIADLRKVFERTRKYGLKMNP CC TKCAFGVSAGQFLGFLVHERGIEVTQRSVNAIKKIQPPENKTELQEMIGKINFVRRFISNLSGR CC GACFEFAYTIKPYATNNQAEYEAVLKGLQLLKEVEADAIEIMGDSLLGIFGRQCWRIVSDIIRG CC VKIVRSLEQFSERRRRL. XX FH Key Location/Qualifiers FT CDS 0..0 FT /product="ATLANTYS-I_OS2p" FT /translation="MKVVNRPSVTEAEFPRLEPIVEDDGEERTHRRCMSYG FT EYASTPTDAGAKLSAELLKDWFCSFYEGFQKDARVWPHQGTSRCRQEKENQ FT IIGCEYLGSSSKEKDQVKKTKPTDDLPALDPSIEQALDEEEIEDDVDQAAA FT EPPPPPSPPVQQSSSDQTPSAVGSHHIEEEEQPAAPAIPPHVHKQVYKEEL FT GSIHDKPSDKTTMLRPTEYAIAEDNQKFSA" XX SQ Sequence 10724 BP; 2957 A; 2002 C; 2738 G; 2985 T; 42 other; cgcttttggc acgcccggtg ggaccgataa gaagtcagcc aacaattctt cctcatggcc 60 gagaaaccac caccatcacc atcctcggct agcccaggct ctgttaaaga aaagatccag 120 aagttgggat tgactgacgt caatgaagga aacgtcgtgc ccatcgatcc agagaaattc 180 acacctgagc agaagaaaga ttttgaagca atgttgcagc aagcacggga tcagttcttg 240 aactcattca tgcagacccg caagggaaca cttgttcaga agtataaart aaaggtagtt 300 gctgatgatc ctgggaccag ttcttctaaa gatggagaag ggaaacaagc tccagatggc 360 tcggctcaac cgagtgacaa aggtgctacc gacggttctc taggaaatca aggtgacaay 420 tctcaaggag tccatggagt tcaaggtgag ggtgcatgga gttcaaggtg atggtgctca 480 ggggttgcaa ggaggaaatc ttaatcagaa tagtgatgcg gcacaagatt ttttcaataa 540 cttccaagat cgggttgact atgctgtgca tcatgctttg atcaatcagt ctggggtgtt 600 agtcaatacc ttatcaaaca tgatgaagtc aatagccgat ggttcaatag ctgagcatca 660 ggctgcaggc ccagtttatt tgcaaggagg tgtctttcca aattatcggc ctttgatcac 720 cgatgttcag ccatctattc aggcagttcc ccccgttgca ccatcagctc agccgacggc 780 gccggcatcg actcccttac ctgctccatc agcattggca ccaggccagc tggtgaaccc 840 tcggttgtta atgagagagc agccacagca tagtgggcag gttgtgaatc ggctgacgca 900 agatcaggtt gctgccatgt ttctgccgcc tcaacctact gttgatccaa tacagcagca 960 gccgattcag cagacacccc caattcagca ggttgtacaa ccaatccagc aacaggtcgt 1020 gcaaccagtt cagcaaacgc caccaaggca gcagcctctg cagccgattc agcagacgcc 1080 gttaagacag caaatcgttc agccgattca gcaccaaggy tcaatgagcg catcggccgg 1140 gtttgcaacg cctggtggtc agcctgtaca acaattttta aatcaagttg tcccagaaca 1200 cttggttcac caygtacagc cggatggcac agtaatgcct caagttgttc ctgagcattt 1260 ggtrcgtaat attcagccga accttcataa ttaccaaggg ggcaacttga attatcaata 1320 tcagcctcct tccccgcaag cccaatatca gccaggggga ttggctcaac ctcagtttgc 1380 gtctcagtac ggtcagttcg agcccatgca acaacagtca caaggagcag ctcagcaacg 1440 accgtgggcc gatgtgattg ctgatgtaat gagggaacag tttgggctta aaccaaaaga 1500 gactggaagc ttgtatcggc agccttaccc tgagtggttt gagagagttc ctctccccaa 1560 tcggttcaaa gttccagact tctccaaatt ttcgggacaa gatggtgtgt caacttatga 1620 gcacattagc cgatttttag ctcagtgtgg tgaagcatcg gctgtrgacg ctctgagggt 1680 taggttattc cggttatctt tgtctggatc ggcttttact tggttttctt ctttgccata 1740 tgggtcgatc aatagttggg ccgatttgga gaagcaattc cacagctatt tctacagtgg 1800 ggttcatgag atgaaattat ctgacttgac agcgattaag cagcggcatg atgaacctgt 1860 gcacgagtat attcagagat tcagggagat gaggaacaaa tgcttcagct tgagtttaac 1920 tgatgcccag ttagccgatt tggcctttca gggtatgatt gctccgatta gggagaaatt 1980 ctcgtctgaa gactttgata gcttgtcaca tctgatacag aaggtaacct tgcatgagca 2040 taggtctgcg gaagctagga aaarctctaa gaaggttaat catgtttgtc cttacatgta 2100 tgggtcggat gatgatgagg atgattctga aatagctgca gccgaatggg tgaggagtaa 2160 aaaggtcata ccatgccaat gggtaaagag ttctggaaaa gaggagaagt atgactttga 2220 tattactaaa gctgacaaga tttttgattt gctactccga gagaagcaaa ttcaacttcc 2280 tgctggtcat acaattccat cggctgagga attaggcaaa aagaggtatt gcaaatggca 2340 taattctggg tctcattcta ctaacgattg caaggttttt agacagcaga ttcaggtggc 2400 cattgaggga ggcaagatta agtttgatga ttccaaaaag ccgatgaagg tcgatggtaa 2460 tccttttcct gttaatatgg tgcatacagc tggccaaaca gccgataggg gccgtgcaag 2520 gggttttcag gtgaattcgg ctaagattat caacaaatat cagaggaagt atgacaagca 2580 gcaggagaag cattatgaag aagacgatga tggttttgat cctcattggg gttgtgagtt 2640 ctttagattc tgttggaatg aaggtatgag gttgccatct atcgaagact gtcctgggtg 2700 cagtgatatt gccgagagct caagccgatc atataatagg ggcaatcggc taaggcagac 2760 aagagttcct gttcatcaaa gattgggtcc agtgaatcaa gatcgtggcc aagaggacaa 2820 tgaaatcagg aagactcaat ggtgtccttc tggtattttc acgaagaatc agaagagaag 2880 ggttcaaaga ttgaggaaca gggagcgctt tcaggaggty gaacaagaaa ttaatcatcg 2940 gctgaagaaa gcaaagccga ggcaggagtg gcgtgttaag aatcaggttc ctgtagccga 3000 tgatgttgca gccgatgagg caaagaggtt ggcaaaaggg aagagtgttg tgacggcacc 3060 agttaacatg gtytttacct tgccagccga attcgggatc gatcaagccg atgtcgacga 3120 ggtggaagag gaatcggcta agttggttct gtcaccagaa caggcagtgt tcgagaagcc 3180 tgaggggaca gagaatcggc atcttaaacc attgtatata aatggctatg tcaatgggaa 3240 gccgatgtct aagatgatgg ttgatggtgg ggcygcggta aatttgatgc cttatgctac 3300 gttcaggaag ttgggtagaa atgccgagga tctcatcaag acaaatatgg tgctcaaaga 3360 ctttggtggc aatccatcgg aaaccaaagg tgttctaaat gtggagctga cagtcggcag 3420 taagactatt cctaccacgt tttttgtcat cgatgggaag ggttcttaca gcttgttgct 3480 tggaagggat tggattcacg ccaattgttg cattccttca actatgcatc aatgcttgat 3540 tcagtggcaa ggcgacaaga tagagatcgt gccagccgac aggtcagtta atgttgccag 3600 tgccgattta gctctttggg agatggatgg ccttgattgt ttatctggaa aagtttggga 3660 tggagatttt ctaaaagtgt ccgattctga tatacagcca attgaagatg gagaacccaa 3720 gctattattt tgagggcgtc gtggagggtt caaatgtcta caccaaggat acagtagatg 3780 atctcgatga caagcaaggt caaggtttta tgtcggccga tgatttggaa gaaatagata 3840 taggtccagg cgatcggcca aggccgacat ttattagtaa gaatttatct ccagaattta 3900 gaaccaagct gatagagctc ttaaaagagt ttagagattg cttcgcttgg gagtattatg 3960 agatgcctgg actcagccga tcgattgttg aacatcggct acctatcaaa ccaggggtta 4020 ggccacacca gcaacctccg aggagatgca aagccgatat gcttgaacct gtcaargctg 4080 agattaaacg attatatgat gctggtttta ttcgtccttg ccgatatgct gagtgggttt 4140 ctagtatagt tcctgttatc aagaagaacg gcaaggtcag ggtgtgcatt gattttcgag 4200 atttgaataa agctacaccg aaagatgaat atccaatgcc agtagccgat cagctggttg 4260 atgctgcgtc agggaacaaa attttgagtt ttatggatgg aaacgcagga tataatcaaa 4320 tttttatggc tgaagaagat atccataaga cagcttttag atgtcctggt gcaatcggct 4380 tatttgaatg ggttgtcatg actttcggct tgaagagtgc tggagctaca tatcaaagag 4440 ccatgaatta tatatatcat gatctaatcg gctggttggt tgaagtctat attgatgatg 4500 tggttgttaa gtctaaagaa atagaggacc acatagccga tttgaggaag gttttcgaga 4560 gaaccagaaa atatggcttg aagatgaatc cgacaaaatg tgcttttggt gtatcggctg 4620 gccagttttt gggatttctt gttcatgaga gggggattga ggtaactcaa aggagtgtta 4680 atgcgatcaa gaagattcag cctccggaga acaagacaga attacaagag atgatcggca 4740 agataaattt tgttagaagg tttatttcta atttgtctgg aaggttagaa ccttttacac 4800 cattgttgag attgaaagcc gatcagcagt ttacttgggg ggcagagcag caaaaggctt 4860 tggataatat taaggaatat cttagctctc ctcctgtttt gattcctcca cagaaaggaa 4920 taccttttag rttatattta tcggccggtg agaagtcaat cggctcagtc ttgattcagg 4980 agttggaagg aaaagaacga gttgtatttt atctcagtcg tcggctcttg gatgcagaaa 5040 ctagatattc ccctgtggag aagttatgct tgtgtttata tttttcatgt acaaggttga 5100 ggcattatct actgtccaat gagtgtactg ttatatgcaa ggccgacgtt gtcaaataca 5160 tgttatcggc tccaatattg aaaggaaggg ttggaaagtg gatattttcc ttaactgagt 5220 ttgatcttcg gtatgagtca ccgaaggcga ttaagggaca agctatagcc gattttattg 5280 tggaacatcg tgatgattca atcggctcgg ttgaaatagt gccatggact ttattctttg 5340 atggatcggt gtgtactcat ggttgtggta tcggcttagt tataatttcc cctagggggg 5400 catgtttcga gtttgcttat actattaaac cttatgcgac taataatcaa gctgagtatg 5460 aggcagtgct caaagggttg caattactca aggaagttga agccgatgct attgaaatca 5520 tgggggattc tttgctggta atcagtcaat tggcaggaga atatgaatgc aagaatgata 5580 cattratggt ttataatgag aagtgccaag aactgatgaa ggartttcgg ctggttactt 5640 taaagcatgt atctcgagaa caaaatattg aagctaatga tttggcccaa ggggcatcgg 5700 ggtataagcc gatgatcaaa gatgttaagg ttgaaattgc agcaatgaca gccgatgatt 5760 ggaggtatga tgtgcatcaa tatttacata atccatctca atcggcttct aggaaattaa 5820 gatataaggc gttgaagtat actctattgg atgatgagct ttattatcgg acgattgatg 5880 gagtgttact taagtgtttg agtgccgatc aggctaaagt tgcaatcggc gaagttcatg 5940 aaggaatttg tggtactcat caatcggctc ataagatgaa gtggttactt cggcgtgcag 6000 ggtatttttg gccgacaatg ctggaggatt gtttcagata ttataagggg tgtcaagatt 6060 gtcagaagtt tggagcaatt cagcgagcgc cggcgtcggc tatgaatcct attattaarc 6120 catggccatt yagaggttgg ggaattgata tgatcggtat gataaaccca ccatcgagta 6180 aaggacataa gtttatattg gtggcgactg attatttcac caagtgggta gaggcgattc 6240 ctttgaagaa agttgattct ggggatgcaa ttcaatttgt tcaagaacat ataatctacc 6300 gatttggtat tcctcaaact attacaactg atcaaggttc aatcttcgtg tccgatgagt 6360 ttgttcagtt tgccgatagc atgggtatca aattgttgaa ttcttcacca tattatgcac 6420 aagctaatgg gcaggccgag gcatctaaca aaagtttgat caaattgatt aagcggaaaa 6480 tttctgatta tcctcggcaa tggcatactc ggttggccga agcattgtgg tcttatcgga 6540 tggcttgtca tggatcgatc caagttcctc cttataaact tgtttatgga catgaggctg 6600 ttttgccatg ggaagttaga atcggctcta gaagaacrga rttgcaaaac gatttaacag 6660 ccgatgagta ttataacctt atggccgatg agagggagga tttggttcag tcacgattgc 6720 gagcccttgc aaaggttacc aaggataagg aacgtgttgc tcggcattat aataagaaag 6780 tggtacctaa agatttttcg gaaggtgaac ttgtatggaa gttgattttg ccgattggwa 6840 ctcgtgatag yaaattcggc aagtggtcgc cgaattggga aggaccgttc caaatttata 6900 aggttgtgtc taaaggagca tatatgttgc aagggcttga tggtgaagtt tatggacgag 6960 cgctcaatgg caaatacttg aagaaatatt acccaagtgt ttgggttaac gcatgatcgg 7020 ctagtgttgc cgatgcatga cagccgatgt gtttacatcg ccttgagatg gccgatattg 7080 ttatatcgcc cttagttgtt tttcatattg taatcggttg tggtttgccg atgtacaatg 7140 gccgatattg ttatatcgcc cttagttgtt ttataatttt atcaatgctt ttgacattgt 7200 aaaattaggg gggcacatat atatacaaaa tgcaaatttt gcaaatttag aagttatatt 7260 aatcggcaca aaggattgtc aagacagtaa agtattagag tatcttagcc gattacaaaa 7320 atttctaagt cctattacac aaaagttatt gagacaagta ttgctggata gccgaaatag 7380 ccctttgcct aatttgttct acttcttcaa tggcttgggc atcttgagca tcagttccag 7440 ggatgacttt cagggacttg gtcagrtcag caacattctt gatagccgat ttgagccttg 7500 ctttttgttc ttcgatagat tttgggagat cggctagctt tttgtgctcc atatccagct 7560 cagcattgca ttcttcaagt tgtgccaaga gctcaatctt gcgagcttcg agccgatcaa 7620 tattggattt gatcggacct tcagatagct gatcaagttt ggmtttttct tcatgcacaa 7680 gctgccgatt ggcttggatt gtggcttcaa tctccttgcg ctcacggcgt tcggctagtc 7740 ttagcttggc tttttccagc ttgaattgat gttgctcaag ataaacggct ggagttagga 7800 catcggctaa ctcatctggr attagagctt gaacttcatg cagccgtgtc ctaattgatc 7860 cacagtcaac caccaagcta tctagagatg akgcttctag ccgatgagag atatcttcaa 7920 gtgttttctt cacatcatca gataagggag ctagagcttt gcttgaagta tcttcttctg 7980 cctcatcaag ataatctttg atgtcaaaag agaagagatc ggctaraacc tgcagagaca 8040 atttcagaaa ggttaagagy taagtaaata tagccgatct aaattsttgm gwcaaaggaa 8100 aacttactgg gatagcagga gcagctggtt gttcttcttc ctcaatatga tgactcccca 8160 cagccgatgg agtttggtca cttgatgatt gttgtacagg aggagaagga ggaggaggag 8220 gctgtaaaga gacaagtgtt agacaaaatc ggctgaaata attaataaaa attaagaata 8280 tcttactggt ggagctggtt tgagaattgt tgctgccgat ttcttcttca cagcagtttt 8340 cttcttctgc aactacaaaa tctatgagta atcggctgaa aaaaaaataa ttataaaagg 8400 gatcaaagag agatgcttac tcttgaaaag tgagcggggg cagaaggagt tggaggtgtt 8460 tgcttgggyg aagccgatgg tgttctttct gtatcactta cttcggctgc agcctgatca 8520 acatcatctt caatttcttc ttcatccaga gcttgttcaa tggatggatc caaggcaggc 8580 agatcatcag ttggcttggt tttcttgact tggtcttttt ctttggagct agagccaagg 8640 tactcacagc cgatgatctg gttttccttt tcttgcctgc atcggctggt tccctgatga 8700 ggccttgaag gagagttgaa gtcttggggg catgatagcc gatgacaggg ggagatagtc 8760 cacctccatt aggaatcaga cctggggcat attcaatgtt cctgccactg ttgctttgat 8820 gwggagggga ggattctgtt gtctgcaaaa caggagaaag attagtcaag aatgaatcgg 8880 ctaaccagtt tataaattta gtgatgacaa agtttacctg gggtatgaca tcagggaata 8940 gatctgtcat atacattgaa gccgattgat gaaatagatg cagcttccat tcaccccacc 9000 atctgtcaaa gtttttgctc ctgaatcctg ccaactcaat attgtcaatg ctgcctagag 9060 ggggtccttg gaggttaagc agccgatcca tcattagagt tgatgaaatt tctcctcggc 9120 attggatctt gtcggcaaag aataagccga ttgggagttg gcccaatcca agttgtctag 9180 ctgarctcat tgggtgataa aaytcgtagg agacttggat gtttcttcct tgatgaatgc 9240 cgacaggaag gatgcatggg ctgattgcag ctgtgaagac ttccctggat ttttgatatc 9300 tttcatgatt gatgtcttca aatctgaagt ctgatggrag ttcaaggtct gctgagtctt 9360 cataaagaaa ccaaactcga gcatctttct gaaagccttc ataaaagctg cagaaccaat 9420 ctttgagcag ctcagccgat agctttgctc cagcatcggt tggtgtggat gcatattctc 9480 catatgacat gcatctgcga tgagtgcgtt cttctccatc atcttctaca atcggctcta 9540 gccttgggaa ttcagcttct gttacagatg gccgattgac aactttcatg actatcaggt 9600 ttaaccaggt ttgcagcagc caccatggtc cacctgctcc aactactgag ccgacggcta 9660 tcttagccga tgcattgttc aacatttggt atagatagcc gagaaggatt ttgcccaaag 9720 gaaattgttt ctttgattct aaggcttcgg ctacaaattg ccaattggtt gtagggccac 9780 agctggatcc acagaagaga aacttttcta gccacattag caagaaagct acatgctctc 9840 gaggagtgac aggcccttgg cccatatatg ccgctacata rccagaccaa cctcctatgc 9900 ttttggtctt gaagtcaaat tggttcttgg tgttcatact catagggtta gccgatgaag 9960 ttacatctaa tccagtratc atgatgatgt cgatcaaagt tggagtcatc ggcccttggt 10020 tgaacaagaa ggcattgatg gtgttggacc agaaataggt ggcrgcwgcc atcagaggtt 10080 catccttagc agaattggct atggtgaggg caagtgcttg gccgattcca atttcatccc 10140 agtgaacttt cttactagcc gatacgcgtt tgtaccatgt ggtccagcty ttctcagggt 10200 agtttctcga gagatggcca agacttgaag gtattcttcc agtgacccag gttagggttg 10260 gctagtctaa aggggatcct gttggtttca ccaatgatga aatcagtggg gtcaagattg 10320 ccgattgggc caagaaagta gtggttttcg tgcgataggc tgggaatcgc aactaggttg 10380 gaaaggtgct acaaatccaa aggaatcgag aagaagaaaa caaatgagaa agagaaaatc 10440 gatctgatgc taagaaargg gatctagccg atgagaactt acctcagcgt actcggcyga 10500 tggcgcagca gatgggctgg tggaagacga catcgccgca ggcggagatc tggccggaga 10560 tgaagtcgcc tgggratcgc ctttgcgtcg gaggaatcgc cggagagaga gaggacaaag 10620 tttcgcttga gcggtgaaaa cggaagtcac ggtgtgagat ttctcgaggg taacggttag 10680 tatttaaagc actagaataa cggtcggaaa acggcaagtg cgaa 10724 // ID SPMLIKE repbase; DNA; ORY; 9655 BP. XX AC AF172282; XX DT 09-SEP-2002 (Rel. 7.08, Created) DT 09-SEP-2002 (Rel. 7.08, Last updated, Version 1) XX DE Rice non-autonomous DNA transposon SPMLIKE. XX KW DNA transposon; Transposable Element; SPMLIKE; non-autonomous. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-9655 RA Tarchini R., Biddle P., Wineland R., Tingey S. and Rafalski A.; RT "The complete sequence of 340 kb of DNA around the rice Adh1-adh2 RT region reveals interrupted colinearity with maize chromosome 4."; RL Plant Cell 12(3), 381-391 (2000). XX DR GenBank; AF172282; Positions 55331 56056. XX SQ Sequence 9655 BP; 2917 A; 2007 C; 2217 G; 2514 T; 0 other; cactaatata attgtcatcg cgaagtacat ttggtcccaa aaatgtttcc tttttattgt 60 acgtgtcttg ctacggttgc taacttaata tattggctta tcttttgtga agccactaac 120 ggcaatgatt aactgcagtg ccgacagcac ggacagatta caatccttgt agcaattaaa 180 gcacacaatc acttgaagag agccgtacct acattttgct gctgccattt agttgcgaca 240 tttgagaaat tagtactaaa taaaattagc taggccacca ttacactgat cactaagggc 300 cagtttgttt tggtttatta gccttttcaa ttatgatgtt aataagctgg ccttttagtt 360 tataagttag aacatttttc ggcttcaaaa ctcaggtgga actgaaaaaa aatgcttttg 420 gttttgcaaa ggaattagcc taccaatatc gtactaaaac agaaatgtat cacgtgcaca 480 cactgtccac atcaaccaag gcggtgtttg ggaataaaag agaaatgtac cacgtgcaca 540 cactgtccag atcaactaag gtggggtttg ggaaggaggg actaaagttc cctctcacaa 600 aaattttagt ccgtatagga gggacttatt tttcggagag aggaagtttc tcactcccaa 660 acacccacta acattatttc cttgatatgc gtgttgtgta aagtctcaac tgtaaattca 720 ttactatggg atttttagta acatttgtca gcaagcttca aaatttcttc aaaaaagagg 780 ggaggtcatg ccaaaatttc tagtaaattt attttggtga ttatatacaa atcggaggac 840 cacagaacgt cattgtaccc aggttgcgag caggggcaca aaaaattgga taccactctg 900 aagttcttgc aatggaaggc aaaaaatggt gttagtgaca aggcatttgg cgatttattg 960 aaacttttca agaacattct tccggagaga aacaaattgc ccgagacaac gtacgaggct 1020 aagaagatag tctgccctct aggactggaa gttcagaaga ttcacgcatg tccgaataat 1080 tgtatcctat atcgcggtga ggagtacgag aacctagaag cttgccctgt ttgcaaagca 1140 ctatgataca agattagacg agacgatcca ggagatattg acgggcagct aacaaagaag 1200 agaattcctg ctaaggtgat gtggtatttc cctataatac cacggctaag gcgtttgttc 1260 aggaacaagg ggaatgctag aatgatgcga tggcacgctg aagagcgtca acaggacggg 1320 atgctgagac accccgccga tggttcgcag tggcgaaaca ttgacagaaa atttaaaaga 1380 ctttggaaag gacgtacgaa acatacggtt tggtttaagt acagatggca tgaatccttt 1440 tggagagatg agcagcggcc atagcacttg gcccgttacg atgtgtatct acaacctccc 1500 ccctggctat gcatgaagag gaagtacata atgatgccga ttattattca aggccccaag 1560 caacctagta atgacatcga tgtgtaccta agaccactgg tcgaagatct taaactgttg 1620 tggaaaaagg aaggtgtccc cgtgtgggac gaggacaaac aggaggagtt taacctacga 1680 gcgctgctgt tcgtaaccat caacgattga cctgcactta gcaacctttc tggtcagtcc 1740 aacaaggggt acaaggcttg cactcattgt atggatgaaa cagaaagtac gtatcttaag 1800 cactgtagga aggttgtgta tatgggtcat cgtcgattcc ttgctgcaaa ccacccggta 1860 cggaagaaag gcaagcactt tgaacataag gcggaccacc gtacgaagcc taaacatcac 1920 agcgggaaaa cggtgtttgt tatggttaaa gatcttaaag tagtgttcgg aaaggagcct 1980 ggaagccagc ctatagagag cgaagatggt cacgcggcga tgtggaaaaa gaactctata 2040 ttttgggagt taccctattg ggaattcttg gacgtccgcc acgcaatcga cgtgatgcac 2100 ctcactaaga acctttgcgt aaaccttctt ggcttcctag gtgtatatgg aaagtcgaaa 2160 gatacactgg aagcacgtaa tgatctgaag tatatggaac aacgcagcga ccttcacccg 2220 gaacgaaagg agaaaggaag ccattacttg agtccagcta gctacactct tagcaaggca 2280 gagaatgaaa gtatgtttga atgcttggag agtataaagg taccgtctgg atactccacg 2340 aatatcaagc gaataataag cacgaaggag aagaagttca caaacctaaa gtctcatgac 2400 tgtcacgtgt tgatgacaca actgctacca gttgtaataa ggggtatcct tccagacaat 2460 gtccgggcaa caataacaaa gctatgtgct ttcatgaacg caatttcaca gaaggtcatc 2520 gatccggata gattagaagc ccttcagaat gatgtggtac aatgtcttgt cagttttgag 2580 ttgatatttc caccttcatt tttcaatata atgacacatc tgctttgtca ccttgtcaaa 2640 gagatcagta ttctcgggcc tgtataccta cacaacatgt ttcctttcga gaggtacatg 2700 ggcgttctga agaagtacgt tcgtaaccgt gctcgtccag aggcaagcat cgccaaaggg 2760 tatggaacag aggaggtcat cgaattttgc gtagaattta ttgaagacct tcgcccaatc 2820 ggggtacctg aatcacgcca tgaagggaga ctacggggaa agggaactct cggaaggaaa 2880 gcaataatga cggtagacaa caatttattc tgtaaagccc atttcacggt tctgcaacaa 2940 tcttcattgg tagctcctta catcgaggag cacttggctc tagttcacgc cagaaacatc 3000 ggttagtccg atgcgtggat tacacggcat cacattgata ctttccccgc gtggctacaa 3060 caacatctca tgggtaacga gacgatcaac caacaactgg ccttcctggc gaggggacca 3120 tctgggtcga tcgccacatt ccagggatat gagatcaatg ggtacacatt ctacacgaga 3180 gcccaagaca cgaagagcac gaaccaaaac agcgttgttc gtatcgatgc catgggacac 3240 gatggaacaa ctggcacgta ttacggtgcc atcgaggaca tatgggaact tgactatggt 3300 cctctcaagg tccctctatt ccggtgccaa tgggttaggt tgactggtgg aggcgtaatg 3360 attgatgaca gtgggatgac aacggttgac cttaacaagg ttggatactc ggacgaacct 3420 tttgtccttg ccaatgatgt aacgcaagtc ttttacgtga aggacatgtc tagcaaagga 3480 aagaagggca aagggcctga cgagccgaag cgttacgtgg ttctccaagg caaaagaaaa 3540 atcatcggag ttgaggacaa gactgacgag gattacgatc aattggatgg gcaaccccct 3600 ttcacggtga cgattgacct tagcatcctc ctatcaaatg aagacacccc ttactcacgt 3660 agcgatcaca aggagggaac aatagtgagg agaaagtacg tgcggtcaac cgtcaccgct 3720 gatgtattga cgtaattatt gtgtacacga tgtaaactat tttggatgta ttgattatcc 3780 atataaatca atttttgtat ggcatatgtt aattacgtac aattattaga ggttttaaca 3840 attttaaatc atgtaattgc tagttatatg cgataattag aatttttaaa agttttaaat 3900 catgcatgtg gcatttacat atgatactta gagtttttaa caattttaaa tcatgcatat 3960 gctagttata tgcgataatt agaattttta aaagttttaa atcatgcatg tggcatttac 4020 atatgttaat tagagttttt aacaattaat ttaatatcgt tcatatgcta attatatatg 4080 attattagaa tttttattaa ttttaaatca tgcatgtcgt atgtatatac atatgttaat 4140 tacaattttt aacaatttaa tatcattcat atgctaatta tatatgatta ttataatttt 4200 tattaatttt aaatcataca tgtcgtatgt atatacatat gttaattaca atttttaaca 4260 atttaatatt attcatatgc taagtatata tgattattag aatttttatt aattttaaat 4320 catatatttg cttattacgt tttatccact taatttacta cagacaacaa taatgtttcg 4380 aagtaattgt cattaatttt tcgactttaa ataattttaa tgcattattt tctattttag 4440 aatcacatat gtaatggaaa ttaatattaa gtgcgcttat cagtagtccc ggttcttaac 4500 cctaaccggg tttaaaaaga atttggaaat agcgagaaaa tatctttagt cccggttgtt 4560 gagaacaacc gggagtatct ttactcccgg ttgttctcat caaccgggac taaagatcta 4620 ggggtgtata tattcctgat gcgcgccctc atcttctcca ccaacactta gaagtttttc 4680 cccgatcaat ctctctcggc ttctccttcg ccgccactgc ctaggacatc cccgcgccga 4740 cgccgccgtc gtatctagcc gttgtctcgc gcgcgtcgtc gtcgccgcct ccgccgcctc 4800 ctccgccgcc gcatctctgg ggtgagagac gccgccgcca atgtcgtcgc cggtggcggc 4860 cgcatcaagg tcgggttcgg catcgtcggc gcggcggagt cgtgttcggg gtccgccgcc 4920 gcgccacgcc gatgccgcgc caccacgccg ccgccgcgcc acgccgccgc cgcgccaagc 4980 cacagccgcg gcgccacgcc gccgctccgc tgccgccacg tgaacgaacg aagaacgatc 5040 gtgaacggac gaaacgtacg tgaacgtgaa cgaacgaacg aacgtgaacg agaacgtgaa 5100 agaacgtgaa cgaacgaaac gtacgtgaac gaacgaacgt acgtgaacgt gaacgaacgt 5160 gaacctaacg tgaacgtgaa cgaacatgaa cttaacgttg tatgtgaacg tacgtaaacg 5220 aacgaacgtg cgtgaacgaa aagtgaagtt aacaagaaca cgaacatgaa cttaacgtac 5280 attaacgtga acgcacgtga acgaacgaac gtaggtgaac gaaacgtgaa cttaacgaga 5340 acgcaaacgt gaaatacaat atatgttact ttgcgtttat cctaatacat ctttttgtat 5400 gttgcggaaa agacgttgtc gtcgtcggcc ctcaagccgg agtggtagct aaccctcgaa 5460 ggaattcgcg caggcaagtg atgtaaatat atgattgtta gatttttaat gcaattaaga 5520 ctattagatt taatatatga cacttagact tagcatatat gattatctag gtttgtaatg 5580 tacgacactt agacgactta gcatatatga ttacataggg tcctaatata cgacacttag 5640 acttagcata gtataagatt attagatttg taataagact tagcatataa gattgtttga 5700 gttagcatag ttctaataca agattattag agttttaata taagattatt agatttgtaa 5760 ttagacttag tatataatta ttgtctaggg tcctaatata cgatacttag acttagcata 5820 gttgactatt agagttttaa tacaatatta ttagagtttt aatataagat tattagattt 5880 gtaattagac ttagtatata attattgtct agggtcctaa tatacgacac ttagacttag 5940 catagttgac tattagagtt ttaatacaat attatttgag ttttaatata agattattat 6000 agttttaata taagattatt agatttgtgt aataagactt agtatataat tattgtctag 6060 ggtcctaata tacgacactt agacttagca tagttgacta ttagagttct aatacaatat 6120 tatttgagtt ttaatataag attattagag ttttaatata agattattag atttgtaata 6180 agacttagca tataagattg tgtagggttc taatatacgc aagttagact tagcatatat 6240 gattgttagc atataagatt gttaaagcaa aaatgaccta tagacttacc aactatgtct 6300 tgtatgaaca gatggctgat cgtgatgagg aacagatatt gtacgataca atcgcggagg 6360 gaagcagcca gtactggaac gaagaagagg ggaacgagga tccaaaccag tacttgaacg 6420 aggaagggaa cgtggagagg gatgcagagg ggaaccagga ggggaacgtg gagagggatg 6480 tggaggggaa ccaggaggag gaggctagtg gaagtcaacc ctttgctgga cagaagaggg 6540 cacgcgggca acgaggtgcc gcaaagaagc tagagggtca gcacatcata acggaagtgg 6600 acgaagacgg ccgacctagt gccccggcgg aagcagccaa gaactacgta cgacacagcg 6660 gttgggttgt gcgggataac gtgcctgtca gtacggtgta ctagcgcaga acaagggcac 6720 gcagagatca tgagagcttt gtcctagatt cagagaaaga gatgttgtgg accacaatgc 6780 tcgagacatt cacccttccc gcgggtatag aggacacagt gaaaaggtgg actctaaaga 6840 aaatggtaga acagtttcag agcttcaagg gagatctata ccagaaatat atcctaaagg 6900 ggcagacacc gaacttcgac acattcccaa agctaaggga tcactgggac gagttcgttg 6960 catataagac aggtcaacaa gggcaggcga tgatggaaag aaacaaaaaa aatgccacca 7020 agaagaagta tcatcaccac ttggggtcag gcggctatag cgtcgcgatg ccaaagtggg 7080 aggagatgga aacaagcttg cttgagaggg gtatcgaacc ggccaccgct aaatggccgg 7140 atcgatcgaa gttctggtac tatgctcacg gtggaacgct caacccagtt gatggctccc 7200 tggtcttcag cgatcagata cgcgaggctg cgcgtcgact aatggacaca gtggaagcct 7260 cttctcaggg cacgttccga cccgacagag agaaggacga gctgtcactc gccctgcaga 7320 ctctagagca tccaggacga acacgaggga aaggggtgat tccttggaag attggattca 7380 aggaggacat ccacacgtat aggagtcgaa tgaggagcaa gagagatacc gaggcgaaga 7440 ttgcagatct tgagtacagg gtatcgagct acgagctcag catgcaagag gaggtggcaa 7500 gaaaggttga tgaacgcatg gccgcacatc ggtcccatga tccccagccg accattccac 7560 ctgcaatggt gagcccttca ggcaatcgta gcagctgcgc ctcaacgggg caggtaggat 7620 cacagagcat ggacgctatg caaacccagg acgaaaccac ctgccccgtt gatgacatca 7680 ctcagcggac accatgtgag ctgcatattc ccttcaagaa cttatcaata aaggtaagct 7740 cgtagtttat agattttaga tttgtccatt ccgcaagttg ctgcttataa atgttgatta 7800 ctaataaata acctctcacc acgtgaaggt ggcgtcgggc atggccatac caacggaccc 7860 ttcaggtact taccactgca ggccgattct agcaggatac tccaaggtcg aaattgagtt 7920 ggtggaaggc acatacgagg acctcgagtt ggattacctt ggaggagacg gtgagacgca 7980 tctacgagac acaagccacg ccattatact atggcgcaag cggtacatca tcctccctgg 8040 gcgacaagcg gcgtctcatg caccatctcc tccggctccg ccatctcctc ctcaggctcc 8100 tgcaccgtct cctcctcatg ctccagcacc gtctccacct caggctcctt caccgactcc 8160 tcctcaggct ccttcaccga ctcctcctca ggctcctaca cagactcctc cgcaagctcc 8220 tcgtccggca ccttccaagt caagggcccc ccaagctcca ccgcctgccc ccacaagggc 8280 aacgaagaag gcaaaagttg acgccgcaaa aaacaaggac ctggggtacg attgcacgca 8340 agaggagctt gacgcttatg tggcatcaga agtcaggaga caattgaagc ctcgaagtcc 8400 agaaaagaag attcctatag acccgagtgc caggaaattc ttcaggggta tgtctgcacc 8460 tgccaaggag gccataaagc tatcggacta tgagcgaaca cttaagaaag catcttctgg 8520 aaagtccaaa ccagtccctc agcttggaga gcaaccaaac caagagatcg agccgttagt 8580 gaccggtgaa gattttggaa tacaagaatt tattaatgac accgggctaa ctacgggtca 8640 attgctacga ggcgcaccaa tcgaaaaggc ggaagtgaaa tacatgtacg aactcggtaa 8700 accgcttgtc aagcctgagc agctgtagtc cctacccaca caaatgtaca agttccatca 8760 actatacatg gagatgagcg ccaccagtag agagatgatc ggagcgagga tcagggacac 8820 ggacttcttg caaggagatg acattctctg gatcaatttc aagggtatct acgaactata 8880 ccagctggac gccctcgacg tctctattat gagttgctgg attttgtaag tatcgttcag 8940 ttagatttct tattacgttt cctttaatta attaggtcct tatatataag tagactatat 9000 ataatatata cttcctttta tcgttgtaga atggagattc aaagggcccg acggcggggg 9060 gtttttgata ctggattcat cgaccctcgg aaagtaaacg tcgcaatgct cgaccagtat 9120 ccgcaagcca cagaggacaa tctcgtccat ctgctgaagg cacagcatta caagacgttc 9180 atactattgc cgtacaacac agagttttta gtgtcttcct ataacaaatt tcattcccgt 9240 acgaacatgc taagtgtttc atatgtaatg catcccacgc acattgcaga ttccactggg 9300 tccttttact ctttgacctg gaggcctgca ccgtcaacgt atatgactca atggataaaa 9360 aagagtctac gtttgacaag gttttcgaac ttatagatag gtactgtcat aagttcctat 9420 gttaattaag aatcttgtta taattaattg ctactacgaa tcatagcttt aaactccatg 9480 tagggcttgg tatcggttcc gtcatttggt ccgcgacaaa tggagagaaa gacttaggca 9540 gaagttcaat tttcctgtga gtacacatgc tctacattta tattcaatct ccaattcaaa 9600 tacatacaag tgtatattaa ttagatctct catcgtttgt catttattta tagtg 9655 // ID RETRO1_LTR repbase; DNA; ORY; 1079 BP. XX AC AP002816; XX DT 06-NOV-2002 (Rel. 7.1, Created) DT 06-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Oryza sativa retrotransposon RETRO1_LTR, long terminal repeat. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW Long terminal repeat; RETRO1_LTR; retrotransposon. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-1079 RA Sasaki T., Matsumoto T. and Yamamoto K.; RT "Direct submission."; RL Direct Submission to Genbank (26-JUL-2000). XX DR Genbank; AP002816; Positions 16304 17383. XX SQ Sequence 1079 BP; 215 A; 324 C; 292 G; 248 T; 0 other; tgacggagct cgtggctcct caccgggaga ccgcgcaggc ccccctttgc cggttcggcc 60 gggggcttag ggtgagatct caagctctct ctgtatgtgg aaagattact cgccggcaag 120 acacacgaga cacggcgatg tatacaggtt cgggccgccg cgaagcgtaa taccctactc 180 ctgtgttttt gtggatttgt gtatgaatga gctacaaagt gtccgcccac ttctcccccg 240 ctctaggctc taaatctggc cagaatcaac cccccccttc tctatgggca aggtcctcct 300 tttatacttc aaggggatac cacatgcacc cttccctttc caaactggac tgttcttctt 360 ttttttcttt aatcggcgga gattggtatg gttgtcgtcc aaatgacact tcgatgggac 420 agctcacacc tacctccacc cccggcggag acgggcgcaa cgtgagatcg tggctgcccg 480 ttgctgatgc gaccagtgtc agaccggtca ttcgtgtcca ccacgcgtca gtttaacaac 540 gtgcatgttt gcccttcttc gtgtaacacc ttgcctgtaa tggttaggat gaagcctggt 600 ataaatctac cagggctaac gtgccatctc taagagataa cacgctagct ccggcttgag 660 acgagttgcc ttgaggcttt cgtcttgacg ggatggggcg aggcgtgcgt cagaccgcca 720 gtcgccacct aacccttgat ctgaccggtc tgtgactggt cacagaccgg ataaaagagc 780 gtgctgtacc gcgttgcacg cagcgtgaca cgcttgacca gactgcaata aatgctgtta 840 ggtgagcaca gctgtgctca cttatcccat atacgtggcg cagacttctt taaggggtcg 900 gggtgcctcg gccctcgggg ccggggcaaa cgcaacccga cccccccctc gggggaaatc 960 aggaggaggg cggacacctc accctcgggc ccgacgtccc cgaaggtgcc aggccacgtg 1020 ggcgattgcg tctgcctcaa gcctctggtc atgatactcc cggtcccata tcaccgaca 1079 // ID SZ-55 repbase; DNA; ORY; 10318 BP. XX AC . XX DT 16-AUG-2004 (Rel. 9.07, Created) DT 09-APR-2007 (Rel. 9.07, Last updated, Version 1) XX DE Rice retrotransposon SZ-55. XX KW Copia; LTR Retrotransposon; Transposable Element; SZ-30; SZ-55. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-10318 RA Jiang N. and Wessler R.S.; RT "SZ-55: a retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 109-109 (2002). XX DR [1] (Consensus) XX CC SZ-55 has 1626bp LTRs. Related to SZ-30. XX SQ Sequence 10318 BP; 2633 A; 2010 C; 2557 G; 3118 T; 0 other; tgtgaaacca tgtgtggtta tagttctttt gtgatgggaa attgacaagt accggaagtg 60 caagaagtgt gtgcgtagac taccattggt caggttgcga tatctgtgcc aagacaacgg 120 ttgtttggct catgtgtgtg caggtgatca gagtcaatct tagtcaacgg cggatcggga 180 ctagactcag ggagaagttg aggtccagaa cgatcaagga tgccgggtga caagattgga 240 cacaaggttg cacacggtgg gcggacaccg tgtgaggagg tctttgcaac gggcttcaca 300 aggtcaagtg tgcaagcatc ggattcgcga agaaaattgg aaggagaaga ggactgtgca 360 aggacatgaa gaccgagtgc attgctgcta cagtaattcg gcttactgta gctagcatgt 420 atcatgtgca cgtgtgctgc catgattgaa tggcaaggag accaacagga gctggccact 480 aggcttgtgg gctggcagtt cggttggcag gaaggccgag ccaacccggc ctaagcacgt 540 tgctgactca agatggtgaa ggctaggccg agcaagccct agacatgacg atggcccagc 600 tcggctcagc aaatgcacag gtgtgtgcat gcgcgcgcgg aagcgggaga tcgtacggca 660 cctggaggcg tggcggcctt ctgttcgtca aggaagcgac cgggtcccac gcggtttttc 720 gcatggtgcg cgcgggaaca tggttttcgc gagcgcgcgc agaagcggct cggtgggagg 780 aacggcgacg tggcggcttc ggactggtgg tgcgcaggcg tgagaggagc aggcacgcgc 840 tctctgggac gcgtggcgcg gatgcgttgg cttggaggag cacgacgcgg atcggtgcac 900 gctgattggc ttggagtgga atcacgcgga tcgcacgagg gcgcgcaacg tggagagctc 960 ggatcaacaa cgtggcgact atccaggagg cttccttcgg atctaaggaa caatggacag 1020 ccaggattac atcaaggcta gggtttcgcc ctagggatat ttgagacaat gtcttagggg 1080 tcttaggcta taaatagaga gatggatgca agggtggagg ttgctccttt tgtaatcctt 1140 ttgagatgct cggtgagaga gtttcggtgt gagtttggag tgtgtttgct cgagaggctt 1200 ttgtattagg attagtttgg agtgtgtttg tccgagagat tttaattttg tgttaatgtt 1260 cctctgaagg tgtatgtttg cccctagttg agcggttatt ttgcatcacc tatgaatgaa 1320 atgatttgaa ggatttcgtt tttgccttgt tcatttaaat tccgcaattt aaattctact 1380 tgcaatttga actttgcgat gatgagtttt gttatctcct cctcacctct cttctagttt 1440 gggaaattcc ttttctcttt ctcttctagt ttcgggaatt tctttctctc ttcttttcta 1500 gatccggctt ctctaatagc cgcggttcta gtaaggattt ttgagaaatc cggcttgatg 1560 agtattttcg ggggcaagat ttgaattgct atattcaccc cccctctata gctgttcttg 1620 gtctttcaat tggtatgaga gcaaggttaa gttcattgta acctaaccgt ggcaacgaac 1680 gccgctatgg aggaaaaata ttctgcgaaa ccatttgttt tcgatggaca caattttgtc 1740 atttggaagg cacgaatgga ggcctacctc cagtcgcaag ggcataatgt gtggaataag 1800 gttaaatcac cttacactgt gcccgatgat gctgacatca cgcctgcaaa tgtggctcag 1860 gttgatttta attatcgtgc aagaaatgca atcattggtg gaatttcttc tggtgaattt 1920 aattgtgttc aacaccacaa gtccgctcat gacatgtgga ctgctctgtg caatttccat 1980 aagggaaaca atgatattca attggttcgt cagaatcaat ttcataaaga atatcaaaga 2040 tttgagatgc acccaggaga gtccattgat tcttatttca agcgttttgg agaaattgtt 2100 tcgaagttga gatctgttgg aaaagaattt tctaataatg ataatgctcg ccatcttttg 2160 aattgtcttg attatggtgt ttgggaaatg aaagttactt ccatcacaga gagtgcacct 2220 ctgagtgacc ttaccatgga caagctttac tcaaagctaa aaacccatga gatggatatt 2280 ttccatcgga aaggcctcaa acactcgatg gctttggtag ctgatccctc tggtagtact 2340 tcttctaatg actcagcttt tgtgtgtggt ggcttctctc ttgccgcttt acactcagtc 2400 actgaggagc aattagagaa gattcctgaa gaggatcttg ctctttttgc tagaaaattc 2460 tcaagagctt acaaaaatgt gagagataga aaaagaggaa aaaccaatga accatttgtg 2520 tgttttgagt gtggagagcc taaccacata agagtgaatt gtcccaagtt gaagaagaag 2580 agtgacaaga cgaccaagaa gcccgaggga caagggcgaa aggggaataa ggatttgatg 2640 aagaaggcga tccataaggt cttggcggct cttgaggagg tgcagcttag cgacatcgac 2700 tccgacgacg atgatcaaga aaagggggac aaggacttct ccgggatgtg ctgtctcgcc 2760 aacaacgagg acttcatcaa cctgtgtctc atggcacttg aggataagga tgactcatcg 2820 gagcatcctg aggtatgtct tgatgatatc ccttccttgg atggttctct ttgtgatgat 2880 ttttgctcag ataatgactc tgttgatgat gaactaagca aagaaagaat ggcacacttg 2940 atgattgaaa ttagtgacaa gtataggtct tctaagtata aaattgagaa actaaaatct 3000 gaaaatgatg gtatggcgct agaaattgct aggcttcgat ccatgattcc tgaggaggat 3060 acctgttcta cttgtgcttc atatctctct gaaattaatc tcctcaagga taagttgaaa 3120 tcatgtgctt taggagctgg gaatccttct agtgctagtg ttgcttgctc tacttgctat 3180 gaaatgaaag ttgatatggg tttgcttgag atggaattga aagaactaaa agaaaaaaaa 3240 tttcatgata ggattggtag gtgtgaaaat tgtcccattc tcactagtga caatgatgaa 3300 ttaagacaac aagttgccat gcttaggacc aagaatgatt tgttagaatc ttttgctact 3360 aaggaaccta ttcattcttc atgtgctaat tgtgctatcc tggaaactga actaaaagat 3420 gctaaaactg tcattgattc tatcaaatct attgattctt gttcatcatg catttctctg 3480 aaagttgatc ttgagtctgc taagagagag aacttttacc tacaacaatc tttagagagg 3540 tttgctcaag gaaagaaaaa gttgaacatg atcctagact aatccaaagt gtccataaac 3600 aatcaaggta taggctatga ttttgatgag tctttgagga taggtaccca tgagatatta 3660 ggtgtcacag atgggatgat agaactagct caaaagccta taaccttcaa gtctgcaggt 3720 ttcattggaa acactagttc tagttcaccc aaaacctcag aaccaaagat ggtacctatg 3780 actagcaagt ctaagcctgt agagttacct agacccaaaa atccaaaaca agttgagcac 3840 aagcaaaacc agaaacaaac caagcctgta gagaaaacca agtatgagtg cacctattgt 3900 gggaaagctg gtcatttggt aggtttctgc tttagaaagg ctagaaaaga gcgacaagaa 3960 cgttttagga ctagaagaga tactagagtc cctgagaggt tcaagtgtgc atgtcgttca 4020 agtggtgtat ctcgctttcc tcgccgagat gtgcaccctc gacgtgacct agcaaggttg 4080 gggcaaaaca gacatggtca tcttgcatat aattctgctc ataacactaa agatgcttgt 4140 acccctcgca tggttcagta ctggattcct aagtcatttc tcactaaccc cagtactgaa 4200 tcatcgagat ttgctttgtt tttcttgtag gattttggag tggggagaag taattcttgg 4260 cttgtggact ccggttgctc acgccacatg accggtgaag ccaagtggtt tacttctctc 4320 actcgtgcat ccggtgatga gaccatcact tttggggatg cgagcagtgg acgcatgatg 4380 gctaaaggaa caatcaaggt caatgacaaa ttcatgctga aggatgtcgc gcttgtaagt 4440 aagcttaagt acaatttgct ctctgtttca caactctgtg atgaaaatct agaagttcgt 4500 ttcaaaaagg ataggtctcg agttcttgat gcttctgaat ctcctgtttt taacatttct 4560 caagttggtc gagttttctt tgctaacttt gactcttctg ctcctggtcc ttctcgttgt 4620 ttcattgcct cagagaatag ggatttgttt ttctggcatc gtcgtcttgg tcatattggc 4680 tttgaccact tgtctcgcaa tagtggtatg gatttgattc ggggtttgcc taagttgaaa 4740 gctccgaaag atcttgtgtg tgcaccatgt cgtcatggga aaatgacatc ttcctcccac 4800 aagcctgtta caatggttat gacagatgga ccgggacaac tgcttcacat ggatacggtt 4860 ggtcctgctc aggtccagtc agttgggggg aagtggtatg tcttggttgt tgtggatgat 4920 ttctctcgct actcttgggt ctattttctt gaatcaaaag aggaaacgtt tggcttcttt 4980 cagtctcttg ctcgtagttt ggctttggag tttcctagtg ctcttcgagc cattcgtagt 5040 gataatggct ctgaattcaa aaattctgca tttgaatctt tctgtgattc ttctggagtc 5100 gaacatcagt tttcttcgcc atatgtccca caacagaatg gggtggttga gaggaagaac 5160 cgcacccttg tggagatggc acgaactatg cttgatgagt ttactactcc aagaaagttc 5220 tggactgaag ctatttctgc tgcttgtttt atctccaatc gtgtgttttt gagaactatc 5280 ttgcacaaga cgccatatga gctcagattt ggtcgtcgac caaaagtttc acatctcagg 5340 gtcttcagtt gcaagtgctt tgttcttaaa cctggaaatt tggacaagtt tgaatctcga 5400 tctgtggatg gcatttttct tggctatgct actcattctc gggcttatcg agtttatgtt 5460 ctttcaacta acaaaattgt ggagacttgt gaagtcactt ttgatgaggc tagcccagga 5520 gctagaccag aaatttcagg tgttccagat gaaagcatcc ttgtggatga ggattcagat 5580 gatgatgacg atgattccat ttctccacct ctagacagta caccaccagt acaagaaacc 5640 ggttctccat cgactacatc gccttcagga gatgcaccaa ctacatcatc ttcagcagct 5700 gaggagattg atggtggcac atcaggacca acagctcccc gacacatcca gaaccgacat 5760 ccgcctgact cgatgatcgg aggcctgggt gaaagggtaa ctaaaaatcg gtcttatgaa 5820 cttgtcaatt cagcatttgt tgcctctttt gagcccaaaa atgtttgtca tgctttatct 5880 gatgagaatt gggttaatgc catgcatgaa gagttagaaa attttgaaag aaacaaagtt 5940 tggtctttgg tagaaccttc cttgggtttt aatgtgattg gaacaaaatg ggttttcaaa 6000 aacaaactaa gtgaagacgg ttcaattgtt cgaaacaaag ccagactagt tgcacagggt 6060 ttcacccaag ttgagggctt ggattttgaa gaaacttttg caccagttgc tagattagaa 6120 gctattcgaa ttcttttggc ttttgctgct tcaaaaggtt tcaagctttt tcaaatggat 6180 gtgaaaagtg cttttctgaa tggtgttatt gaggaagagg tctatgtcaa acaacctcct 6240 cgttttgaaa atccaaaatt tccaaatcat gtgttcaaac ttgataaaac tctttatggt 6300 ttaaaacaag ctcccagagc ctggtatgaa agattgaaaa cctttttgct tcaaaatggt 6360 tttgaaatgg ggggagttga taaaactctc tttactcttc atagtggcat tgattttctt 6420 cttgtccaga tatatgttga tgatatcata tttggtggct cctctcatgc acttgttgcc 6480 cagttttctg atgtgatgag cagggaattc gaaatgagca tgataggaga gttgactttc 6540 ttccttggac ttcaaatcaa gcaaacaaag gaaggaatct ttgtacatca gaccaagtac 6600 tccaaagagc tcctgaagaa gttcgacatg gccgactgca agccaatcgc cacccccatg 6660 gcaactactt catcgcttgg tcctgatgag gacggcgaag aagttgacca gcgcgagtac 6720 agaagcatga tcggctccct cctctacctg actgcgtcaa ggccggacat ccacttctcc 6780 gtgtgcctgt gcgcgaggtt tcaggcttct ccaagaacat cacatcgcca agcagtcaag 6840 tgcatcttcc gctacatcaa gtctacactt gagtacggta tttggtaccc ctgctcttct 6900 gccctttcag ttcgagcttt ttcagatgct gattttgctg ggtgtaagat tgatcgcaaa 6960 agtacttcta gcacttgtca ttttcttggc acttctttgg tctcttggtc ctctcgtaag 7020 cagtcttctg ttgctcaatc aacagctgag gctgagtacg tagctgctgc tagtgcatgt 7080 agtcaagttc tttggatgat ttcaactctg aaagattatg gtctgtcttt ctctggtgtt 7140 cctctgcttt gtgataatac aagtgcaatc aatattgcaa aaattccagt tcaacactct 7200 aggaccaagc acattgagat acagtaccac tttctccgag acaatgttga gaaaggtacc 7260 attgtgctag agtttgttga atctgaaaat caattggcag acatttttac aaaaccactt 7320 gatcgctctc attttgagtt cttgcggagt gagttagggg tgatccaccc ctatggcttg 7380 atttgagggg gagttgtttt tcttttacat gcatttgtaa catattgcat catgtttact 7440 ttatgcattg tattatacac tcttcaattg agctttgctt gttatctctt ggtcatcact 7500 atgctatgca tgtattactc ttatgctagt ttgatctttt gtctagcttt catttgctta 7560 agtagcttgt gtgatcatgt tatgctgttc aagcttgttg aaacctgctt aaattgacta 7620 ttcatttgaa cttaatcaat gtgcaatgct tgctctagaa gtttgtttaa gttgaagtat 7680 ccatctcata ctcatgctat gttttcattc tttttgcaat aactgtcagt acatgctcat 7740 gaatgctcat gcttatgcgt ccatactttg tatcaatctt gctttacaag ctttatctct 7800 gtttttgtcc gggctactga gtgtgtttac gcatgagtag tgccgaagat agcactgaga 7860 cagcctgtaa tgggaactct agctggaaaa cttgattgag gtcagacggc agtgtttggc 7920 acaaccatca cttgctgact gataagatca ggtggaccgt cgtgattgtg ctattgtctt 7980 taaagaattt aaaaaaaaaa tcataaaaag aaaagtcatg agaaaagatt aaaagctcat 8040 gttctatgct ttgttaccat gttgatactc tttatgaact gggcattagc acattagcat 8100 gggttcattg ctttgattat gtaaatcttg catgattatg agctggtttg cttcctttta 8160 agcttcttct agaaatagct atgcacacta aatcactaat ccacttgaaa gctgtttgct 8220 tgctggcgat actatcctga tattcataac ttgtttcata cttcttttgc acatgcttag 8280 ctaggcttga gcacatgctt gtatctgtgt gatccatgtc tactttttga tgcctttaga 8340 taactctcaa agctctcaga actctggaat ttgcaagttt caatcatttt cattttgcat 8400 ttttgtctct ttttggtctt gatggcatca ttgacaaagg gggagagaat tttgcactta 8460 ttgaaaatta aaacttgctt tagatcttgg tgaaaggggg agtttggcac atagggggag 8520 cattcttgca tttgcatttg catccctttt cttcttgtca cttggtcttg atttttcgcg 8580 atttcaaaat gaccaaagtt cgacttttgc aaaatggttt gctttgtgtc aaaaatcaaa 8640 ttttcaaaat tttgcttgag attgtcaatg ttcccatcaa gggggagatt gtgaaaccat 8700 gtgtgattat agttcttttg tgatgggaaa ttgacaagta ccggaagtgc aagaagtgtg 8760 tgcgtagact aacattggtt aggttgtgac atctatgcca agacaacggt tgtttggctc 8820 atgtgtgtgc aggtgatcgc agtcaatctt agtcaacggc ggatcgggac tagactcagg 8880 gaggagttga ggtccagaac gatcaagaat gctgggtgac aagattggac gcaaggttgc 8940 acacggtggg cggacaccgt gtgaggaggt ctttacaacg ggcttcacaa ggtcaagtgt 9000 gcaagcatcg gattcgcgaa gaaaattgga aggagaagag gactgtgcaa ggacatgaag 9060 accgagtgca ttgctgctac agtaattcgg cttactgtag ctagcatgta tcatgtgcac 9120 gtgtgctgcc atgattgaat ggcaaggaga ccaacaggag ctggccacta ggcttgtggg 9180 ctggcagttc ggttggcagg gaaggccgaa ccaacccggc ctaagcacgt tgctgactca 9240 agatggtgaa ggccaggccg agcaggccct agacatgacg acggcccagc tcggctcggc 9300 aaatgcacag gtgtgtgcat gcgcgcgcgg aagcgggaga tcgtacggca cctggaggcg 9360 tggcggcctt ctgttcgtca aggaagcgac cgggtcccac gcggtttttc gcatggcgcg 9420 cgcgggaaca tggttttcgc gagcgcgcgc agaagcggct cggtgggagg aacggcgacg 9480 tgacggcttc ggactggtgg cgcgcaggcg tgagaggagc aggcacgcgc tctctgggac 9540 gcgtggcgcg gatgcgttgg cttggaggag cacgacgcgg atcggtgcac gctgattggc 9600 ttgaagtgga atcacgcgga tcgcacgagg gcgcgcaacg tggagagctc ggatcaacaa 9660 cgtggcgact atccaggagg cttccttcgg atctaaggaa caatggacag ccaggattac 9720 atcaaggcta gggtttcgcc ctagggatat ttgagacaat gtcttagggg tcttaggcta 9780 taaatagaga gatggatgca agggtggagg ttgctccttt tgtaatcctt ttgagatgct 9840 cggtgagaga gtttcggtgt gagtttggag tgtgtttgcc cgagaggctt ttgtattagg 9900 attagtttgg agtgtgtttg tccgagagat tttaagtttg tgttaatgtt cctctgaagg 9960 aatatgtttg ctcttagttg agcggttatt ttgcatcacc tttgaatgaa atgatttgaa 10020 ggatttcgtt tttgccttgt tcatttaaat tccgcaattt aaattctact tgcaatttaa 10080 actttgcgat gatgagtttt gttatctcct cctcacctct cttctagttt gggaaattcc 10140 ttttctcttt ctcttctagt ttcgggaatt tctttctctc ttcttttcta gatccggctt 10200 ctctaatagc cgcggttcta gtaaggattt ttgagaaatc cggcttgatg agtattttcg 10260 ggggtaagat ttgaattgct atattcacac cccctctata gctgttcttg gtctttca 10318 // ID SZ-22_LTR repbase; DNA; ORY; 768 BP. XX AC . XX DT 16-AUG-2004 (Rel. 9.07, Created) DT 26-AUG-2005 (Rel. 9.07, Last updated, Version 2) XX DE Rice gypsy-type retrotransposon SZ-22. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW GYPSY superfamily; RIRE4; SZ-22; SZ-22_LTR. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-768 RA Jiang N. and Wessler R.S.; RT "SZ-22: a gypsy-type retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 79-79 (2002). XX RN [2] RP 1-768 RA Jurka J.; RT "SZ-22: Minor update (separation of LTR from the internal section RT and cross-referencing to RCB11)."; RL Direct Submission to Repbase Update (26-AUG-2005). XX DR [1] (Consensus) XX CC SZ-22 is a gypsy-type retrotransposon. It has 759bp LTRs. CC Similar to RIRE4. Fragments of this sequence were previously CC described as "RCE direct repeats" in centromere repetitive CC sequence RCB11 (ref. 2). Therefore, RCB1 was removed from Repbase CC Update as complex repeat. XX SQ Sequence 768 BP; 184 A; 199 C; 171 G; 214 T; 0 other; tgatgtgacc atggctacta tagatacaac cgtcgttcac atcaagatca agccgtccaa 60 gttctgcaat ccagttcggc tacctgctac agtgtggact tcaaacggcc gccaaatatg 120 catgcaagct ccattttgga tccatgatta cttgatggaa agctctcaga gtcatctttc 180 caatgatcta gcttcatcgc caaattccaa cccagtcggc caaaatcaca aaaaaaaggt 240 gttgcgtcac ctataatggg cctatgggcc tgtaacttct ctgggacccc ggcccaagtg 300 gggcccatgt ggggtgcgcc ccaaccaggt ggagcacgac cctagggtcc ccttaggtcg 360 tcctcccacc tccttaaata gttaggtacc cctttagagt ttcttgggtt ttgatagatt 420 aaagtttagc cagtgctact tgcttgcagc gcacgtgtcg gctagatcgt ccgtctgctt 480 gctcttcgga accccaactt atcttgtgta ttcattccta tttgctattc agattgcttt 540 tatcttgttc ttgcttgttt cttcgatttg cttgcaggaa taaggttgat ctgcaccggc 600 aagatcaaca acccacggag aggtgtattg atcgctaagg cgcaacagaa cgtcttgtac 660 ggttgtagtc ggatcgttaa cgtttctccc aaatcatagt tatcacaact caccgaaaga 720 tcgggccaac aacagccttg agtgtcgaga ggaactcagg gttcatca 768 // ID SZ-42LTR repbase; DNA; ORY; 958 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 04-AUG-2002 (Rel. 7.07, Last updated, Version 1) XX DE Rice long terminal repeat SZ-42LTR. XX KW LTR Retrotransposon; Transposable Element; Long terminal repeat; KW SZ-42LTR; retrotransposon. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-958 RA Jiang N. and Wessler R.S.; RT "SZ-42LTR: LTR from Oryza sativa."; RL Repbase Reports 2(7), 99-99 (2002). XX DR [1] (Consensus) XX CC Insertion in DASHENG. XX SQ Sequence 958 BP; 297 A; 215 C; 196 G; 250 T; 0 other; tgatgagggg tgttagatcc cgatcttccg aaaggtattg ataaatagtc gatttgggcg 60 gagtcgcgac acaactcgat ccggcttcta aacgaacacg ctactgagcc ccgcaatcgc 120 agcaccacgt ctcctctgct tatcaaccgt gccgaaaccc ggttgacctc accgagaagg 180 ctaatccctg catgcgaatc gaagaacaca agcaagaaca acatagattg caaccaaatt 240 gcatataaat gattaagtac acaaatttgg ggttccacaa accgatctag cggcgaaatt 300 attcttaaca aaataatcta agcaaaaacc tagctctaaa cgatgacggc tactaaataa 360 atgtgattag gaacgtcctg gggttgccct agggcataca ctcctttggg ctaagcccac 420 gacacaatta caaggcccaa aactcaaaat cagattcgga ctggatgagg tgcgtggctt 480 gttttgcaga ttcccggcaa ctcggtagga gttttgatgt gggaccaaaa ctatctgaaa 540 agtagacttc ataagctttc caaaagtact aatgggcccc gaaattcctt ctagatcagc 600 agctaggtcc gtttgaagtt gatgctgtca ggaggcccga atccgaatcc aaaacgtgta 660 gaactttatc tcttgtcttc tatggaccaa aagtgatgtg gtgagatgaa ggaagacatg 720 gaaaaggtct tggtttggtc cccaatcaac ttcttcaatc atccatgcat tccttacgct 780 tggtctcttt tctttcgccc aagcaagtaa ctttgcaaac aaaaatacac gaaactcatt 840 atgtagcaac atttgttcaa atatataaca agtaaatcta atgtagaaca tatacacctt 900 tagttgatta atacataagt tagtcatggt tatatccgtg ttagttgtgt cctcatca 958 // ID KIDDOD repbase; DNA; ORY; 279 BP. XX AC . XX DT 10-JUL-2002 (Rel. 7.06, Created) DT 10-JUL-2002 (Rel. 7.06, Last updated, Version 1) XX DE Consensus sequence of MITE family Kiddo-subfamily D. XX KW Harbinger; DNA transposon; Transposable Element; MITE; KiddoD. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-279 RA Yang G. and Hall C.T.; RT "Consensus sequence of MITE family Kiddo-subfamily D."; RL Repbase Reports 1(4), 26-26 (2001). XX DR [1] (Consensus) XX CC KiddoD is a subfamily of MITE family Kiddo. The estimated number CC for Kiddo in rice genome is about 1200. The consensus TSD is TTA. XX SQ Sequence 279 BP; 81 A; 60 C; 62 G; 76 T; 0 other; ggggctgttt ggatgctata ctaagtttgc caccattcac catacttttt atgtcacact 60 tgtctaagtt gtggcttaca aaaagtgagc cacaccttag ctagcaaaat tggattgtgc 120 cacactttgt tgagttgatg acatgtgggg ccctaataga tgagaaggaa tcttgccaca 180 agtgtggcta tgaaccaaac aatagctaac ttggtcaaac ttgcctaaca tgaggtgtgg 240 caacctttgg caaactttgg gagcaaacca aacaacccc 279 // ID SZ-63 repbase; DNA; ORY; 9602 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 04-AUG-2002 (Rel. 7.07, Last updated, Version 1) XX DE Rice gypsy-type retrotransposon SZ-63. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW GYPSY superfamily; RIRE3; RIRE8; SZ-63. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-9602 RA Jiang N. and Wessler R.S.; RT "SZ-63: a gypsy-type retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 117-117 (2002). XX DR [1] (Consensus) XX CC SZ-63 is a Gypsy-type retrotransposon. It has 2108bp LTRs. CC Internal region is related to RIRE8 and RIRE3 but not the LTRs. XX SQ Sequence 9602 BP; 2541 A; 1785 C; 2348 G; 2928 T; 0 other; tgtaataccc ccgagtttta aattaatata tctcgcggaa tattagagca aacgcgcaaa 60 agttcaactt ttaaaccatt gttcgtatag acgatcggga accgtggatg cgtagagctc 120 gccgagtagt gcaaaataga ctataaattt atagtaatcg gagtccgaac gaagtcccga 180 ggattgaata gatgtgagcc gttagatctt atttagtctc tttatataac caaccaaaaa 240 aaacaaacga aaaaaaaaag aaacaggagc gattctcctg tagccctagc cgccgcacct 300 cctgcgctct gccgccgccg ctgctgttcc tctcttcgcc ggcgccgccg ctggtgcagc 360 cgtcgccggt cgccacagcc ttcgtcgtcc gcagccggtc gttggtgagc tactgttgtt 420 tctgttaatt tccctgctgc tgccgaaccc tgctgttgcc gatctgatct cttccttgct 480 ggtggtgcac ggcttgctgt tgctgccgat attcgtttct gctgctgctg gcctgcaatg 540 aacaggaagg agggagagaa ggcagagaag aacaggaagg aaggaaagaa ggggaaattt 600 gatagaagaa gggaaatttg gggaatttgg tgaatatttc caaattcttc atttttctta 660 tacattagta ctgctaggta atccgtttta gtctatagtt gtttctaatt tatatttaag 720 acgatctgtt tccggttttt tcgaatttat tttatatcga acgctaggct gaaaccgtat 780 tttcaaatct ggtattaaac catcaggaat caggttagtt gtcctaaata aagtttgtag 840 tcattgtcaa tatctttcca acggtgctag tttcactcga ttccgataaa cggtttagga 900 gaaacagcaa aaacagtact gctgaccggg tccggaaatc aggacagcag ttcgtttttc 960 cttaatctgg aattttcaga gtcataatct gattttgtgc tcaacatgaa agttgtagac 1020 aattttgtct agatgtccaa agttgtatta tttgctagtt tccgttagac ggtttgtgag 1080 ttactcataa aacagtaatg gaacagctat aggttattta atacaaatcg ataaaaggtt 1140 tatatgttct aggtttcgat tttagtaaat atcccttgta accatcgtta gttgaatata 1200 gtggtttatg cgtagttttg ctccacaggt gtggagggtt ccaacgttgg aggagttgag 1260 tcggagtatc gaatgagtta aggcaagtac aagacggact tatgtgatgg acaaaactga 1320 gttgttttgt ttgcctttac ttgcataatt attattcaat tgcttgttat tactgattgt 1380 atggctatga cgttatgcta cttattcctg ttttgaccca tattcaaatt catgacgtta 1440 ttcatgtttc attattccgg atgttctgtt tacattattc aagaaccatg cgtagccatg 1500 ggagtgcaat ttggatcttt attcatgatc cttgagaagc gctgatcacg cttgctcggc 1560 ttaccggtaa tgctaagagg atattcacac ctgcccggga gggaactact atcttttgac 1620 ttctttggtt taaaaataaa gtaaatccaa cccttcatgt tggtttctta atgcataaaa 1680 catgcgtatg ttttactagt tcaagattgt atttgctgag tattctttac tcactcttgt 1740 gtttaatttg gtttttaggt acctaatgac atcgatcggc atggggcggg agtagcaccc 1800 ttggactaca cattattatt gcacacaatt gaaattagtt ttagactatg atttttgctc 1860 agcataagtt ttgcatagaa cttgtaaagg tcatttaagg ttctgatcct tatttttcac 1920 gtgggatttg tggagctagg atggtttgga ttgtgtggtt tatatcggta ttgacctttc 1980 ttataactgt ctgtcgtgat gtccgtattt ttaggggaga ctctaccaaa atttctaata 2040 attttaggac ttagtttttg agtgtatttt ggtgtggcat tctatgtacg tggttacctg 2100 gggtattaca gttggtatca gagcgggcgg taggtccatg ggaagtgact gggtaatgag 2160 atatataaat caacataaaa ttttgaacta gagttcctaa ccaattaaaa aaaatacttt 2220 ctcttagggt aggaaataat aagagtagaa cttgggttat atataaacat ctaaaagaac 2280 ttgacacact ggtgcacaat aggaatggga gcatgggtca ttcctagcat ttatgtttct 2340 gctgcatata tatgtgtatg attgtgtttc cttgcatgcc attgtctaac ctattgttaa 2400 actaataacg tgtaaatgct tgtgtttgat atagctatgc cgcctagagt gagtgtttgg 2460 ttggctaaca gaggccgcgg gagaggcgga ggtagaggtc gtggtagggg ccactataat 2520 gaagaagttg aaaatactca ggataatgaa gaggttggga acaactcggt tgctgaatcc 2580 cctattccta atcgtggagg tcgtggtagg ggccgtgctg gaggccgtgg aagaggttgt 2640 ggtagaggtc gccataatga ggcagcatcc tcgaaccaga aggaggatga gcacatggaa 2700 gaggagggtg gtagccattc agctgctgtc tctgatgatg ctcctcgagc tgctcggggg 2760 atgacactca ctagatggac atccatgcgc ttagacacat ttgatgggtc tggtactccc 2820 gttaatgctg cagactggtt acgcaagatg gagaagtata tgaggggatc tagaatgact 2880 cctgaggaga aggttacttt catgcctttt cagttgactg gtcaggcgga catttggtgg 2940 gatggagttg ttgaagcgtg gaaccctgat cgtggtgcta ttacttggga agtttttctt 3000 cagcagttca gagctaagta ttatccagaa tcatttaggg acaagatgag tgatgagtta 3060 aacaatatcc aacagggaag caagactgtt gatgagtatg aacgggagtt cagcagtatt 3120 gtacgctttg tgcctagcgt ggcaaatgat gagcgtgaga aggctaggaa gttctttcga 3180 gggctcaatg ctcggtatag agaagtgatg ggaagaaacc cgcctactat atacctcaat 3240 gcagttgagg aggctcaagg gatggaggtt gagctccaaa ttactactgc gcagaagaat 3300 cgttttggca atgtcactgg taatgagcag aagagagctc atcaggaagg gggtgagaac 3360 tcgcagcgac cacctttcaa gaagtacaaa caaaatcagg tcactcaacc atcatctaaa 3420 cctaggcagt ggggttctca gcctaatgca gcttcacgtc caacggagtc ttagttgatt 3480 cgccctgtgc caaggcaagg gctaatttgc tttaagtgtg gaaagaatca ccattcagca 3540 gagtgtgggt ttactggggc atgtcgtggg tgtggcaaag ctggacacat ggagttggta 3600 tgtaagcgta acccaaattc tatcatcaag tggcaaaagc cgagctccta ttcagcaacc 3660 tcttcaacag ctagctatcc tcgaggttta ggttcatcca ctagtactcc ccgtggtgcc 3720 gtttagatga tgacaactta tccacttcct taccagcagt tcacacataa ttacccacca 3780 ccaccattac caggacagta ttggcccatg cctcaatctt ttgctccacg tgctccactc 3840 cagttgcctg caccgcctat ggcgcatcct tctgcttcag ctccacctca ccagcaggtc 3900 tcagcctcta ctaccccagc tatagctgga gtctacaaca tgcctgcagc ttcatccctt 3960 ggtcgcccgg atgtcgttac aggtacactt ttagttgatt cgcatgatgc cctagttctg 4020 tttgattctg gtgctacatt ttcctttgtt tcaatcgagt ttgcgaaaag agctaatcta 4080 tttagtcaag aggtctctcg atctgtccaa gtcagctctc cagggggtat aatctctagt 4140 tcagtagtat gtctaggttg tgcaatctct attgatgggg aggaatttgt ggcaaatcta 4200 attgtgattc ccttaccgct ctttgatgtg atcttgggca tggattggtt gaaccgatat 4260 cgtgctgtaa tctcttgttt ctggaagact attaccttgg aagctccatc aggcgaggag 4320 atggttttcc aagggagcgc gcctccgcat tctcttttcg tgatgtcaag gttatttcct 4380 gggcagcgtg ctgtaaagac ggggttatta tgggccttag ccgagaagtc atccaagcct 4440 ttagtgattg aagatgttcc tgtagtgcga gattatcctg atgtttttcc cgcagaattg 4500 ccagggatgc cacctgagcg tgatgtagag ttccgtattg atcttgttcc tggtacacaa 4560 cctatctcca gagccccgta ccggttagct cgtcctttcc aagaagagtt gaagaaacaa 4620 ttagatgatc tattatctaa gaagttaatc cgacggagtg tgtcgccatg gggcgcacct 4680 gttattttta ctgagaagaa ggatggaagt tggcgtatgt gtgtggacta tcgggcctta 4740 aatgctgcga caatcaagaa caagtaccca ttgcctcgta ttgaagattt gtttgatcag 4800 ttaaagggag cgaaggtgtt ctctaaaatt gacttgaaat ctggttataa ccaaattcga 4860 gtgcgagaag aggatattga gaagactgca ttttccacga ggtatgggca ttatgagtat 4920 agagtaatgt cctttgggct gaccaatgct ccggcctatt ttatggaggc gatgaatagc 4980 atgttgcata gttttctaga taatttcgtg gtggtgttta ttgatgatat tctgatttac 5040 tccaaagatg tagaggagca tgagcgtcat ctgaggatgg tactagggac cctacgagaa 5100 aacaagttct atgctaaact gaagaagtgt gagttctggc ttcctgaagt ggctttccta 5160 gggcatgtaa ttaatcagca aggtatctcg gttgatccaa gcaaagtttt aagtgttgtc 5220 ggatgggaaa ggccgactaa tgttaaggat gtgaggagtt ttttgggtat ggcggggtac 5280 taccgacgct ttgtgaagga tttctcgatt atcgctaaac ctatgacgat gctcacacat 5340 aaggatgtga agtttcagtg gacggaccaa tgcgagtgta gtttccaaca attgaagcag 5400 aggctggtaa ctgctccggt gcttactttg ccccaacctg gtaaacgttt cactgtctat 5460 tccgatgctt cacgagtagg ccttggttgt gttcttatgc aagagggcaa tgttatagct 5520 tatgcatcta ggcagttaaa gaagcatgag cagaattacc ccactcatga tcttgagctt 5580 acagcagtgg tctttgctct caaaatttgg aggcactacc tgtatggaga atcttgtgat 5640 attttccctg atcataagag tctgaaatat atcttcactc agaaggattt gaacttaagg 5700 cagaggaggt ggctagagtt gattaaagac tatgatctta acattcaata cacaccgggt 5760 aaggcgaatg tggttgcaga tgctctaagc cgtaaggtcg tttctccaac tgtgagttgt 5820 ttgataactg attttgaacg gatggatatc tcctattgtt atgttggagt ggcaagtacc 5880 gagtcacgag tcattcttga gtccgtcata ccccaacgag tgctagaggc ccaacaacac 5940 gatcggttgc tgcaacaagt taagaaacgt gtaaaggaag gaaaaactgg agatttcact 6000 ttggattcct cgggagctgt gcgattccat gggcgtttat gtgttccaca aaaagctaaa 6060 gtcaaggaag agattttgcg agaagcacac cgaacaccat atactgtgca tcctggggag 6120 aacaagatgt atcatgatct gaagaagatc tattggtgga agaggatgaa agtggatgtg 6180 gccaagtatg tggcatcatg tggggtatgt cagcgagtaa aggctgaaca taagagtcct 6240 gctggaaagt tgcaatcatt ggaagttcct gtatggcctt gggatgatat tgctatggat 6300 ttcgtggttg ggttacctcg aactccacga ggaaaggacg ccatctgggt ggttgtagat 6360 catctgagta aggtggcaca tttcattcct atccgcacca cttattctgc gagtgacttg 6420 gcaccgatct attcacgcga ggtagtgagg ttacatggtg tgcctcgctc gattgtttct 6480 gatagggatg ctaagttttc ttctaagttc tgggaatctg tgcaagaggc atttgatact 6540 caattgaaat tcagtacggc ttttcaccct cagactgatg gtcaatctga gcggactatt 6600 caaactttag aggatatgtt gagatcatgt atcctttcat ggaaaggcag ttgggaggat 6660 catttgccgt ttgtagaatt tgcttacaac aatagtttcc atgctagcat tcaaatggca 6720 ccatatgagt cactttatgg aagaaagtgt cgatccccat tgtgttggga ttccataggg 6780 gagagagcta ttttaggacc cgattgggta caacagacca cataacggat agcagaaata 6840 cgacaacaca tgcttgcagc tcaaagtagg cagaagagct acgccgatgt cagaagacga 6900 gaattagagt ttgaagtggg cgatcaagta cttctaaagg tatctccaac caaaggtgtt 6960 gtgagatttg gaacgaaagg caaactcagc cttaggtata ttggtccatt ctcgatagtg 7020 gaaagagttg gaatcctagc gtatcgcctt gagttaccag agtccatgaa aggtgtacat 7080 gatgtattcc atatttccat gttgagaaaa tattgaacat catattaccg tagagccgat 7140 gaccattgag caagatttga catttgagtc tcatcctgta agaatattgg aggaatctga 7200 gagggtgctc aggcatagaa ctatcaagta tgtcaaggtt ctctggacgc accagaccga 7260 gcgagaggcc acatgggaac ttgagtcaca gatgcgggag aagtatcccg agttattcac 7320 gtctggtgag ttatataagt cctacctatg agttcctttc tatacttgtc cgaggtataa 7380 ctggacgaat tcgagggcga attcgattga aggagggagg aatgtaatat cccgtgttct 7440 agagtatgat taggcgaatt cgagggcgaa ttcgatcgaa ggggggaaga atgtaatacc 7500 ccgagtttta aattaatata tctcgcggaa tattagagca aacgcgcaaa agttcaactt 7560 ttaaaccatt gttcgtatag gcgatcggga accgtggatg cgtagagctc gccgagtagt 7620 gcaaaataga ctataaattt atagtaatcg gagtccgaac gaagtcccga ggattgaata 7680 gatatgagcc gttagatctt atttagtctc tttatataac caaccaaaaa aaaacaaacg 7740 aaaaaaaaaa agaaacagga gcgattctcc tgtagcccta gccgccgcac cccctgcgct 7800 ctgccgccgc cgctgctgtt cctctcttcg ccgacgcagc cgctggtgca gccatcgccg 7860 gtcgccacag ccgtcgtcgt ccgcagccgg tcgttggtga gctactgttg tttctgttaa 7920 tttccctgct gctgccgaac cctgctgttg ccgatctgat ctcttccttg ctggtggtgc 7980 acggcttgct gttgctgccg atattcgttt ctgctgctgc tggcctgcaa tgaacaggaa 8040 ggagggagag aaggcagaga agaacaggaa ggaaggaaag aaggggaaat ttgatagaag 8100 aagggaaatt tggggaattt ggtgaatatt tccaaattct tcatttttct tatacattag 8160 tactgctagg taatccgttt tagtctatag ttgtttctaa tttatattta agacgatctg 8220 tttccggttt tttcgaattt attttatatc gaacgctagg ctgaaaccgt attttcaaat 8280 ctggtattaa accatcagga atcaggttag ttgtcctaaa taaagtttgt agtcattgtc 8340 aatatctttc caacggtgct agtttcactc gattccgata aacggtttag gagaaacagc 8400 aaaaacagta ctgctgaccg ggtccggaaa tcaggacagc agttcgtttt tccttaatct 8460 aggattttca gaggcataat ctgattttgt gctcaacatg aaagttgtag acaattttgt 8520 ctagatgtcc gaagttgtat tatttgctag tttccattag acggtttgtg agttactcat 8580 aaaacagtaa tggaacagct ataggttatt taatacaaat cggtaaaagg tttatatgtt 8640 ctaggtttcg attttagtaa atatcccttg taaccatcgt tagttgaata tagtggttta 8700 tgcgtagttt tgctccacag gtgtggaagg ttccaacgtt ggaggagttg agtcggagta 8760 tcgaatgagt taaggcaagt acaagacgga cttatgtgat ggacaaaact gagttgtttt 8820 gtttggcttt acttgcataa ttattattca attgcttgtt attactgatt gtatggctat 8880 gacgttatgc tacttattcg tgtttcgacc catattcaaa ttcatgacgt tattcatgtt 8940 tcattattcc ggatgttctg tttacattat ttaagaacca tgcgtagcca tgggagtgca 9000 atttggatct ttattcatga tccttgagaa gcgctgatca cgcttgctcg gcttaccggt 9060 aatgctaaga ggatattcac acctgcccgg gagggaacta ctatcttttg acttctttgg 9120 tttaaaaata aagtaaatcc aacccttcat gttggtttct taatgcataa atcatgcgta 9180 tgttttacta gttcaagatt gtacttgctg agtattcttt actcactctt gtgtttaatt 9240 tggtttttag gtacctaatg acatcgatcg gcatggggcg ggagtagcac ccttggacta 9300 cacattatta ttgcatacaa ttaaaattag ttttagacta taatttttgc tcagcataag 9360 ttttgcatag aacttgtaaa ggtcatttaa ggttctgatc cttatttttc acgtgggatt 9420 tgtggagtta ggatggtttg gattgtgtgg tttatatcag tattgacctt tcttataact 9480 gcctgtcgtg atgtccgtat ttttagggga gactctgccg aaatttctaa taattttagg 9540 acttagtttt ttagtgtatt ttggtgtggc attctaggta cgtggttact tggggtgtta 9600 ca 9602 // ID LINE5A repbase; DNA; ORY; 437 BP. XX AC . XX DT 06-NOV-2002 (Rel. 1.1, Created) DT 06-NOV-2002 (Rel. 1.1, Last updated, Version 1) XX DE Rice putative long interspersed nuclear element LINE5A - a DE consensus. XX KW LINE; long interspersed nuclear element; LINE-5; LINE5A. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-437 RA Turcotte K., Srinivasan S. and Bureau T.; RT "Survey of transposable elements from rice genomic sequences."; RL Plant J 25(2), 169-179 (2001). XX RN [2] RP 1-437 RA Jurka J. and Drazkiewicz A.; RT "LINE5A: a putative LINE element from Oryza sativa."; RL Direct Submission to Repbase Update (25-JUL-2002). XX DR [2] (Consensus) XX SQ Sequence 437 BP; 129 A; 129 C; 132 G; 47 T; 0 other; aacacaactc caaacagcgg ggaaggggca gagccacgct acactcccaa caaatcccca 60 aaagcagcaa cgccagctaa agaccacaga tggccctccg agaggatgga ctccagaacc 120 actgagaccg aagagagcgc agagtcgaaa accctagagt tccgttcctt ccacagctgc 180 caagagacca ggaggaccag ggagtcgaag ccggcgcgaa gatgctcagg taagcaggcc 240 ctagaagatg gccaccagtc ctggagccag ctgccacggg gaggagagag ggcagcccag 300 ccaggaggcg acaacacacg gagccagacc tgccgagcga acacacagtc gaggaggatg 360 tggttcgccg tctcaagctc ctgagcgcaa aaaggacagg ccgagtggct atcgatgcca 420 cgcttttgga ggagatc 437 // ID RETRO2_I repbase; DNA; ORY; 10690 BP. XX AC . XX DT 19-MAY-2005 (Rel. 10.05, Created) DT 19-MAY-2005 (Rel. 10.05, Last updated, Version 1) XX DE Gypsy-like LTR retrotransposon - a consensus sequence. XX KW Gypsy; LTR Retrotransposon; Transposable Element; RETRO1; KW RETRO2_I. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-10690 RA Jurka J.; RT "A consensus sequence of gypsy-like LTR retrotransposon from RT rice."; RL Direct Submission to Repbase Update (19-MAY-2005). XX DR [1] (Consensus) XX CC This element is highly similar to RETRO1 element over the first CC ~6kb region. The remaining 4.5kb of the sequence has no CC counterpart in RETRO1. It contains extra putative proteins on the CC complementary strand. XX FH Key Location/Qualifiers FT CDS join(34..1710,1709..2509,2513..6238) FT /product="RETRO2_I_1p" FT /translation="FSELSYSFVCAKLLLFSPMAEPAKAHDLSPSVSGDDG FT EPNPRRRARTPPPPPRQSPRREEALERVERSATSPSAGDGEGRRDGERRLL FT VYGDGSTPQGALQAAGALLRHPPVVPDPESPAQRWLDDVANLVMTAQQRLG FT AGGRSSATKASGAATTGSVSSRRRARRAAAVARHSAATPSSTPPTREDLRG FT GPDARLNIERRRNGRRAAHATEGASSSRVSPRHGRGDQPSVPPVGGVGCRA FT FVASLRNVRWPPRFRPTITEKYDGSVNPAEFLQVYTTGIEAAGGDDRVMAN FT FFPMALKGQARGWLMNLPPASVHSWEDLCQQFTMNFQGTYPRPGEEADLHA FT VQRGDDESLRSYIQRFCQVRNTIPCIPAHAVIYAFRGVCGTTACSKRSPPK FT SPRLPRSFFSSRTEWLVRRRHGPGTPPVPVWQLRPPPGPPLRQGGVTGGGR FT RGRPIPTTRVMSSPSRALRGPPERGGLRATKRKRPALPAGSAQPASGAPST FT TPPSTTSRTAAQSKVWLSGRGSGRRRGGRSAVRASPRRFLPAIGEVRPSRR FT PPPRTSMMAMMTPRFPGAWGHHCHRRWGACAHVSRRSLKAMKRELLAAAPT FT HEATRRARWSEVALTFDQTDHPPCVARGGQIAMVVSPTVCNVKLGRVLIDG FT GAALNILSPAAFDAIKAPGMVLRPSQPIIGVTPGHTWPLGHIDLPVTFGGS FT ANFRTERVNFDVADLSLPYNAVLGRPALVKFMAAVHYAYLQMKMPGPGGPI FT SVHGDLKVALACMEQRADHLAAASKPEGGDERLGTSAPAAPRQRIVTCDEV FT PVKEVALGDGPSKTTRIGGLLDGKEDALVSFLRANADVFAWRPADMPGVPR FT EVIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPE FT WLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLL FT CFLDAYSGYHQIRMAREDEEKTAFITPIGTYCYTTMPFGLKNAGPTFQRTT FT RISLGSQLGRNVEAYVDDLVVKTRNQETLLSDLAETFESLRSARIKLNPDK FT CVFGVPAGKLLGFLVSARGIEANPEKIRAIERMRPPSKLRDVQCVTGCMAA FT LSRFISRLGEKALPLFKLLKRSGPFTWTEEAERALTQLKAYLSSPPVLVAP FT EPNEPLLLYLAATPQVVSAALVVERDEDNPHSAHPHPVLTWPGREQGGEAP FT EPNGGPRPPTTGAGPLPACQTVPGAPDPQDGPEATAGRPRLSPSDLEANPV FT PIRPGREQGEEAPEPNGGLRLLTTGVGPLPACPTTPGAPDPQDGPEATVGR FT PPLSTSDPEVVGTEDECAPRGRLDEERPGDAAPGEEDRPRRKVQRPVYFVS FT EALRDAKTRYPQAQKMLYAILMASRKLRHYFQAHRVTVVTSYPLGQILHNR FT EGTGRVVKWAIELSEFDLHFEPRHAIKSQALADFVAEWTPAPEPVSIPEAS FT SDPSQLPHTAHWVMQFDGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATN FT NMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYV FT RQVRRMERHFDGIELRHVPRRDNMMADELSRLASSRAQTPPGAFEERLAQP FT SARPDPIGETDAPDRPPRPVGVQASGPEGSAPSSLRLIAWIAEIQAYLTDK FT TLPEDREGSERVHRISKRYVLVEGTLYRRAANGILLKCIPREQGVELLADI FT HEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRRCRACQFHAKQIHQ FT PAQALQTIPLSWPFAVWGLDILGPFRRAPGGFEYLYVAIDKFTKWPEAYPV FT VKIDKHSALKFIKGITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCF FT ASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRT FT TPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDDLDYL FT EERRRRAALRAARYQQSLRRYHQRHVRARSLCVDDLVLRRVQTRAGLSKLS FT PMWEGPYRVIGVPRPGSIRLATGDGTELPNPWNIEHLRRFYP" XX SQ Sequence 10690 BP; 1937 A; 3499 C; 3354 G; 1900 T; 0 other; tctggcgcgc caggtagggg actctgcgtg tgattttctg agctctcgta ctctttcgtg 60 tgcgccaagc ttctcctgtt cagcccaatg gccgagccag caaaggcgca cgacctctct 120 ccgagtgtga gcggtgacga cggggagcca aacccacgcc gtcgagctcg tactccaccg 180 ccccctccac gccaaagtcc taggcgggag gaggcgctcg agagggtcga aagatccgcg 240 acttcgccat ccgcgggaga tggagaagga cggcgagatg gggagcgtcg cctcctcgtc 300 tacggcgacg gcagcacgcc ccagggcgcg ctccaggctg caggcgcgct cctacgtcac 360 ccgcccgtcg tccctgaccc ggagtctcca gcccaacgtt ggctggacga cgtggccaac 420 ttggtcatga cggcacagca gcgcctaggt gctggtgggc ggtcctccgc caccaaggcc 480 tctggcgctg ctaccaccgg ctccgtgtcg tcaaggcgga gggcgcggcg agcggcggct 540 gttgctcgcc attcggccgc cactccctcg tcgactcctc cgacccggga agatctgcgt 600 ggggggccgg atgcccgcct caacatcgag cgccggcgta atggccgacg tgctgcccac 660 gcaacggagg gcgcttcctc gtccagagtg tcacctcgac acggacgcgg ggaccagccc 720 tccgtgcccc cggttggtgg tgtcggctgt agagcctttg tggcgagtct tcggaatgtc 780 cgttggcccc caaggttccg gcccaccatc accgaaaaat atgacgggag cgtcaacccc 840 gccgagtttc tccaggtcta tacgaccggg attgaggccg ccgggggtga cgacagggtc 900 atggcgaatt tctttcccat ggccctgaaa ggacaggcgc ggggttggct aatgaacttg 960 ccacccgcgt cggtccactc ttgggaggat ttgtgccaac agttcaccat gaacttccaa 1020 ggcacatatc cacgcccagg tgaagaagcg gacttgcacg cagtacagcg aggggatgat 1080 gagtcacttc gctcgtacat tcagcggttc tgtcaagtcc gtaataccat accatgcatc 1140 cctgcacacg cggtgatcta cgcgttcagg ggggtgtgcg gcacaaccgc atgctcgaaa 1200 agatcgcctc caaagagccc cagactaccg cggagctttt tcagctcgcg gaccgagtgg 1260 ctcgtaagga ggaggcatgg acctggaacc cctccggttc cggtgtggca gcttcggccg 1320 cccccgggtc cgccgctcag acagggcggc gtgacaggag gaggaagaag aggtcggccc 1380 attccgacga cgagggtcat gtcctcgccg tcgagggcgc tccgcgggcc acccgaaagg 1440 ggaggcctgc gagcgacaaa aagaaagagg ccggcgctcc cagcagggag cgcccaaccg 1500 gcaagtggtg ctccgtccac aacacctccc tccacgacct cgcggactgc cgcgcagtca 1560 aaagtttggc tgagcggacg aggaagtggg aggaggagag gaggcaggag cgccgtgagg 1620 gcaagtcccc ggcggttcct tccggcaatc ggcgaagtga ggccaagcag aaggcccccg 1680 ccgaggacat cgatgatggc gatgatgacc taggtttcca ggagcctggg gccaccattg 1740 ccaccgtcga tggggagcgt gtgctcacgt ttctcgccgg agcctcaagg ccatgaagcg 1800 agagcttctg gccgcggccc ctactcatga ggcgacgcgc cgggcgcggt ggtcggaggt 1860 tgccctcacc tttgaccaga ccgaccaccc accgtgcgtt gcccggggag gacagatcgc 1920 gatggtggtt tcccccaccg tttgcaacgt gaagttgggg cgtgtcctca tagatggagg 1980 agcagccctc aacatccttt cccccgcagc ctttgacgcc atcaaggccc cggggatggt 2040 gctccggccg tcccagccga tcatcggtgt gacgccgggg cacacttggc cgctaggtca 2100 tatcgacctc ccggtcacct tcggtggatc cgccaacttc cgcacggagc gggtgaactt 2160 cgatgtggcg gacctcagtc tgccctacaa cgcggtcctg gggaggcccg cgttggtgaa 2220 gttcatggcg gcggtccact acgcctacct ccagatgaag atgccgggcc ccggtggccc 2280 catctctgtc catggcgacc tcaaagtcgc gcttgcttgt atggagcagc gcgcggacca 2340 cctcgccgcc gcgtccaagc ccgagggtgg cgacgagagg cttggcacct ccgcccccgc 2400 cgccccgagg cagcggatag tcacgtgcga cgaggtcccg gtcaaggagg ttgccctggg 2460 cgacggcccg tccaagacca cacggatcgg tggtcttctg gacggcaaat aggaagacgc 2520 gctcgtctcc ttcctgcggg caaacgctga cgtcttcgca tggagaccgg cggatatgcc 2580 cggggtcccc agggaggtga ttgagcaccg tctcgccgtg cggccgggcg caaggccggt 2640 ccggcagaaa gtgcggcggc aggccccgga acgtcaagcc ttcatccgcg aggaggtggc 2700 gcgacttctg gaggccggat tcatccgtga ggtcatccat ccggagtggc tggcgaaccc 2760 ggtggtcgtc cccaaggcga acggcaagct tcggatgtgc atcgactaca ccgaccttaa 2820 caaggcatgt cctaaggacc cttaccccct gcctcgcata gatcagattg tcgactccac 2880 cgcggggtgc gaccttttgt gttttctaga tgcatactct ggttaccatc agattcgcat 2940 ggctagggag gatgaggaaa aaactgcgtt cattaccccc ataggaactt attgttatac 3000 aacaatgccc ttcgggttaa agaatgcagg tcctactttt caacgtacta ctcgaatttc 3060 tttgggtagc caattaggac gtaatgttga ggcttatgtc gatgacttgg ttgtaaagac 3120 gcgcaaccaa gagacgttac tctcagatct agcggaaact tttgaaagtc tccgctccgc 3180 ccgcataaaa ctgaaccccg ataagtgcgt gttcggtgtg cctgcgggca agcttctcgg 3240 gttcttggtc tctgcccgag gcatcgaggc caaccccgag aagatacgag ctatagagcg 3300 gatgcgcccc cccagcaagc ttagggatgt gcagtgcgtc accggttgca tggccgccct 3360 aagtcgcttc atatcgaggc tgggagagaa ggcgctaccc ttatttaagc tcctcaaacg 3420 ctccgggccg tttacttgga cggaggaagc tgaacgtgcc ctcactcagt tgaaggcata 3480 tctcagctct cccccggttc tggtcgcccc ggagccaaat gagcccttgc tactctactt 3540 agcggcgacc ccgcaagtgg ttagtgcggc gttggtcgtg gagcgcgatg aggacaatcc 3600 tcattccgcg cacccccacc ctgtgctgac ttggcccggg agagagcagg gaggagaggc 3660 ccccgagccg aacggtggcc caaggccccc gacgaccgga gcaggccctc tgcccgcttg 3720 tcagacggtg ccaggtgccc ccgaccccca ggacggcccc gaggccactg cgggaaggcc 3780 gcgcctatcg ccctctgacc tcgaggctaa ccctgtgccg attcgacccg ggagagagca 3840 gggagaagag gcccccgagc cgaacggtgg cctaaggctc ctgacgaccg gagttggccc 3900 tttgcccgct tgtccgacga cgccaggagc ccccgacccc caggacggcc ccgaggccac 3960 tgtgggaagg ccgcccctgt cgacctccga ccccgaggtc gtcggcacag aagacgagtg 4020 cgccccgcga ggccgcttgg acgaagagcg ccccggggat gcggcccctg gcgaagagga 4080 tcggccccgc cgaaaggtgc agcggcccgt ctactttgtt agtgaggccc tccgggacgc 4140 caagacccga taccctcagg cccagaagat gctttacgct attctgatgg cctcgaggaa 4200 actgcgccat tatttccagg cgcatcgggt cacggtggtt acgtcttacc ccctcggcca 4260 aatcttgcat aatcgagagg gtactggacg agtggtgaaa tgggcaatcg aactttctga 4320 gttcgatttg cactttgaac cacgccacgc tatcaagagc caggccctcg ccgattttgt 4380 ggcagagtgg accccggctc ccgagcccgt ctcgatcccc gaggccagct cggacccctc 4440 gcagctgcct cacaccgccc actgggtgat gcagttcgac ggctccctgt ctcttcaggg 4500 cgccggtgcg ggggtcacgt tgacctctcc gagcggagac gtcctcagat acttggtccg 4560 cctcgacttt cgagcgacca ataatatggc agagtacgag ggactccttg ccggactcag 4620 agtggcagct ggactgggga tccgccgcct cctggtgtta ggcgactccc agctggttgt 4680 taaccaagtc tgtaaggagt accggtgctc tgacccgcag atggacgcct acgtgcgcca 4740 agtacggcgt atggagcgcc attttgacgg gattgagctt cggcacgtgc ccagacggga 4800 taacatgatg gccgacgaac tctcacggct cgcgtcctcg cgagcccaga ccccaccggg 4860 cgcctttgaa gaaaggcttg cccagccgtc ggcgcgaccc gaccccatag gggagacgga 4920 tgcgcctgac cggcccccga ggcccgtcgg agtccaggcc tcgggacccg aggggagcgc 4980 tcccagctcc cttagattga ttgcttggat cgctgagatc caagcatacc tcacagataa 5040 gactctaccc gaggaccgcg aagggagtga acgcgtccat cgcatctcca aacgctacgt 5100 gctggtagaa gggaccctct atcggcgcgc ggctaacgga atcctcctga agtgcattcc 5160 tcgggaacaa ggcgttgagc ttcttgccga tatccatgaa ggcgaatgcg gagcccactc 5220 cgcctcgcgc accttggttg gcaaggcctt tcgccagggt ttctattggc cgacagctct 5280 caatgatgcg gtcgacctgg tccggcgatg cagagcgtgt cagttccacg ccaagcaaat 5340 ccatcagccg gcccaggccc tgcagaccat accactttcg tggccatttg ctgtctgggg 5400 gctcgatatc ctgggaccgt ttaggcgggc cccgggcggg tttgagtatc tgtatgtcgc 5460 gatcgacaag ttcactaagt ggcccgaggc ttatccggtc gtcaagatcg ataagcactc 5520 cgcacttaaa ttcattaagg gcatcacggc ccggtttgga gtgcctaacc gtattattac 5580 ggataatggc acccaattca ctagtgaact cttcggcgac tactgcgaag acatgggcat 5640 caagctctgc ttcgcctcac ctgcccaccc cagaagcaat ggccaagtgg agcgcgccaa 5700 tgcggaaatc ctcaaaggcc ttaaaaccaa gaccttcaac atactcaaga agcacggcga 5760 ttcatggatc gaggagttgc cagcggtgct ctgggcgaac cgaaccacac caagccgagc 5820 aaccggggaa acgcctttct tcctcgtcta cggcgcggaa gcggttctcc catccgagct 5880 caccctgagg tctcctcggg ccaccatgta ctgcgaggct gatcaagatc agcttcgcag 5940 agatgacctc gactacttgg aagagcgaag gcggcgcgcg gccctccgag ccgcgcgcta 6000 ccagcagagc ctgcggcgct accatcagcg ccacgtccgg gcccgatcac tctgcgtcga 6060 cgacctcgtc ctacgccgcg tccaaacgcg tgctggattg agcaagctct caccaatgtg 6120 ggagggtccg tatcgagtga tcggcgtccc ccggccgggc tccatacggc tggccacggg 6180 cgacggcact gagctgccta acccgtggaa catcgaacac cttcgtcgct tctacccctg 6240 agggggggtc gggtgtcagg tttcgggctc gggccaaccc cgcaccccct cgggcgtgca 6300 gggttggccg ggggctacca cacatgcact ttcttatttc tcttatttca gtatttcaat 6360 aaaagcagtt tcaatttcct aaaggctgtg tctgtgccgt tttttccttt tgaagaatct 6420 tgacttgaaa taggtcactc gtgctcaatc ctgccctcgg gggctcgggt cggctaaaat 6480 cgccaaacgg ggcccagaac cgagccgtgc cccggggcgt ggtgaactcc gggggggaat 6540 cggcaaaaac ccacaatcgg gtcacccata accctcggtc accacgttcc cggcctggcc 6600 agtctcgaca tgtggatctc cccaggcact agccccgacc cgcgcctttt gaggactggg 6660 acctgtgcac gagcccttaa tcaagctaag acacaaaagg accacggcac agatcatcct 6720 catctcatac tcacagcaag ataaaattaa cacagaaatt tcttcatttt tgattacaga 6780 ttaagttgat ctatacaaaa aagaggcccg aaggccttag aaaaagaaaa agaaaaaact 6840 gaagattggc gggggcctgg gggctcattc cgatgcgccc gggtcgccgg cctcgtcgcc 6900 actgtcgtcc gcaccaccgg catcgccctc ctcgtcggag ttgggggcga acgcgagccg 6960 aggggccgag ccctcgaagc tgtggacgat gtggtcggcg gcatcccgga cctcggtccc 7020 gggagggaac tcatccagcg ccatccatgg ggagaagtcg gggtccctgg cctggtaact 7080 cgccaggacg agctccaccg ctccttgggc gaggtccctc gaggatgact tgattgtctt 7140 ctcgagctcc tcggggagcc gttggagagc cccggccatc ttcgagaggc gctgggcgag 7200 gcctccctgg ttggcggcgt actttacggt ccgccctctc cagaggcccg cttgccgacc 7260 ggcgcgatct aggcgggaga cggcatccca aagcatgccg ggccctacct cgcccgccaa 7320 gcggagggct tcgacctccc cggcggacga gtccagcgcg ccctgcagat cggcgatggt 7380 gtgttcggca gctgcgaggc gggcggctac gtcgctttcg cccgcggccg ccccgccgct 7440 gcgcgccctc gcgtccagct ccttcgcccg cgcctcgagc tcagcggccc actggtccag 7500 tgcggccctc tcggcgcggg cgccttccag attacggcgc gcctgctcct cctgcgctgc 7560 ctcgcggagg gacaggctgt ccgccagccg ttgcgccgcg gcctcggcct cctcgagagc 7620 tcgctcccgc tcggtgagcg cgtcctcgcg gaggcggagc gcggactcct cttcggcgca 7680 ggcggcctcg tgcgccgcca gcgttgcctc ccggatggcg acggcggcct cgcggtccgc 7740 caggtccctc tccacgacgc aggcgcgctc ttccagcgcc atggcgcgcg cctcaagggc 7800 ctcttcgcgc cgccgggacg ccgcttcggt ctccgccgcc cgctgttctc gggcagcggc 7860 ggcgtcaagg accccctggg cggcgtcgag cttcttctct agctccgcct cccagctccc 7920 gtattgaagg cggagggtgt cctgcgcctc gttcatcacg gtggtggcga tgagggcagc 7980 ctcccgctcc tcctccacct ccctggcgat ctccgccagc accttcttac gggcttcaag 8040 ctccgagatg tgccggcggt gagccttacg gcccacctcc accatggcct ccaccgagcg 8100 tcgcccctct tcgacgcgcg cccacgcggc gtcgagctcc gcccgctctg cctgcagggc 8160 ctccacctgg gcacttaacc catccaacac cgtggtgttt gcggcggcca aggcctgcag 8220 aaggggctct gcgctcagtg gggcggtaga aggcgtgggg aagagccgcc ttggagagga 8280 tgccacgcgg ctcggcccgc cgatggacgt gccggactcg gggatgtccc ccggacccgg 8340 ttggtcctga gcgtcgcccg agggagcggg cccaagcgat gcgcccgcag cctcgtcgcg 8400 agctgccccg gaagttgtcg cctgagcgtc gcccgaggga gtgggcccaa gcgacgcgcc 8460 cgcggcctcg tcgcgagctg cctcggaagt cgccaacatc tcgtcctggc gggctcgggc 8520 ggcctcctcc cgaacggctt cctcggcctg gcgggcccgg gcggcctcct cccgagcgat 8580 ttcctcggcc tggcgagccc gggcggcctc ctgggcggcc tcctcggctt cccgaaggcg 8640 atccgcggcc tctcgccggt cagattcccg cctccgggcc tctgcggccg ccggatcctc 8700 ggcctcagac tggccggact tggaatggcg ggagggacgc gacgggatct cgctgaagca 8760 gaagaaaaga ccagaagaca aacgagatgg gtgagtgaaa acttgcgttg ggagaatgaa 8820 tacggccgcg atgggcgaga gacgaacctg cgagggggtc ggttaaacga ccaccttgga 8880 ggggaaatga ggtttccccg ggatggttct gtctccccca tcttgcggag ccacttcttc 8940 ttgcgctccc cctcgggctg cgatgtcggc gcggccccct ccgggcgcct gctgctggca 9000 cgcgccgccc cgccccctcg gggaggagat gggggaggtg ttcctccctg cttcctcttc 9060 ccccgggcgt cggcagggcg gctgctcccc gggcccccgt cgcggggccc agaagcacga 9120 ccccctcctg gggtagattg ttccccccgg cggctcccgc ctgcgccgtc gtggccctta 9180 ggagcccgct cctctgaggc cccgaccgcc atcatgatgg tcaggatgga ggcgcggtct 9240 ggatcgctgc agagggggag gattccttga ggaatgaggg acgcctccac ggagctgaga 9300 ttcagcaccc gttggaccac tatcttgaag tcctcaggag cccagtccca tctgactccc 9360 tggtgggtcc tcatgtagtc ctcggacccg gtgtactccc aggcgccccg ggcgcgccgc 9420 tggagcggcg caatccggcg acggaggtag tcgccgtaca ccatggcccc tgtgagcccc 9480 tgggatcgca ggcccgccag gcggtcgagg acggcgtcat agccatcccc cagatctacc 9540 ggcgcccgcc agctggaggc ctgcgccggg ggctggctcg gaagtcggag gcgcgcttcg 9600 tcggcaaggg gggtgtagaa ccagtcgctc ttccagtcgt cccacttctt gcggagggcg 9660 caggggatgt agcggttcag caccggcccc cgcggctgga agtagcagcc accgactacc 9720 gatggcggcg acaccgactg cacggtgaag aaccaccgga acagccgaag agatgggcgc 9780 accccaatga acatctcgca caggtgcgcg aagatggcca atgtcatcac cgcgttgggg 9840 gtgaggtgcg ccatctggag atcgtagaac tccagaacat ccatgaagaa agaagaaaat 9900 ggcggaacca gccctgccat tgcgaagggg aggaagaaga cggaccgccc cgggtagtct 9960 ggcgccgggc gtccctcgcc cagcgtgact atctcccggc cggtggcaga ttccggcatg 10020 aagcggcgcg gcagcccagc ctgcctctcg ctcacgatgc gggaaggcgg cagcacgcta 10080 ccatcgagca gagcggagcc ccgtgccatg gcgccggaag gaagagaaga ttgagagcga 10140 gtgcgtgtgg cgaaggtagg gcacaggaaa gaaagagtta gggcgcaagc ggcgaaggca 10200 aggggaataa tggcgaaagg aaggaaacaa atcccttcct cagtgccttt atacccttgc 10260 caacgctgtg cccggctcct cgtttctcgc gcccactgtt tcgccccctc gtttctcgcg 10320 cccacgcttc cactaatccc attcgcccgc ttgcggcgca tgaggtggat atgcggttgt 10380 ggcagtcgag atagatcata tcgtgcgcgc gttaattacg ctcgccgacc aaagcgacgt 10440 taccatatct ccagacgaaa cgaatcggca cgtccagatt cgtgcgctac tcgagtaatg 10500 tggcagtctt gaagagaccg ctcattattg acggccgagt taccattgcc gatgtgcgtg 10560 atttgtgacc gttgggtttc tgcccaattg tggagaccgg tcccacctgt caccaggcct 10620 taggagtggc gtcacgcccg accgcttccc ttgaggaggg cgatcgccct ggcataacgc 10680 cgggggctac 10690 // ID RETROSAT2_I repbase; DNA; ORY; 6208 BP. XX AC AF111709; XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 08-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Oryza sativa gypsy-type retrotransposon RETROSAT2_I, internal DE region. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW GYPSY superfamily; RETROSAT2_I; internal region. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-6208 RA Llaca V., Lou A., Young S. and Messing J.; RT "Direct submission."; RL Direct Submission to Genbank (05-DEC-1998). XX DR Genbank; AF111709; Positions 29183 35390. XX SQ Sequence 6208 BP; 1637 A; 1549 C; 1613 G; 1409 T; 0 other; ttggtatcag agccgacctt gaccgtagga caagccaaat ggaaaaacct aagagccctc 60 tgaatccttt tcattgcata tgttctttgc aattggattt gttccgggaa aattgggatc 120 tgttcttgtg gttcaaggga aaaatcttgg tcgctcgttt aagtgagatt tttcaaaacg 180 agtcagtcta gggttttagt aaaactattg agatttattc gtcagtcagt tgggatttga 240 tgggtgaaat gcattaggtc ctagctctgt aacatgggtt gcaaggtatt tatgctttgt 300 tcgttattat taatatgtat ctaatttccc attattttat cgttatgtga gtccgtctta 360 tttattcgct ctcatgcaaa atgatctatg cataaaattt tgctcttatt tgattccctc 420 atttgagtct tttattgctt tatttaaatt tggatttgag catgcattga tcctactcct 480 ttgtcttctc tagatggccg gtcacccacc caaccaccgc ggagaaggca tgatcgattt 540 cgtggcagag ttggcacgca tgacactggt ggtgggctac cccgacgcgc cggagtacac 600 gaccatccca ccgctcagtg gcgagcttcc tcaccgtgtc cgcttggagg tccatggcta 660 cgtggggact tgcctcgcta acatggcggt cgaggcatca ggaggcacag cagatcacgc 720 ctgtcaggag gcagcctacc tgatgatggc cagactacgg gagcgccaca actacatctt 780 ccacgacacg gcgtaccgct accaccccag tcgagcccac agtgatggcg tcagctcctt 840 ccgtccgaca gctggcgaga acgacaccac cttcggtcac atgtgtgctg tgatgagggg 900 tttggacagg atgcactcgg acctgcacaa ggcgaccaag gccttgaacg atgggaagct 960 catgaggatc gtcgctctga aggacgagat agcgcgcctg aagaaggaga atgctcagtt 1020 gaagggtctt ccagcgccag gaggagtccg gatccgcact acgccccgta agaggacgac 1080 tgcacccgtg cgcatccagc ttgcgcccag gaacccacct ccagcagcag ctcccgcagc 1140 acctccagtt ccgcccgcag ttcctgcagc tccagctcca gctcccgcgt tcactctctc 1200 cttcgctcca gcatcagccg ccagaggtcc agccagtggt accggaggtt ggttgtctgc 1260 tactcccagt ggcagcggcg agactgatct gtcaggttcc aggagtcgct cagagggacc 1320 tggtgatgag caggaggacg ccttcgactc caccgaccgc aggagccgtt ccgagcatta 1380 ggctcgtttt cccattagtt tatcgattgt ctagtttctg cttgttagtt tgtgtgttta 1440 ggttgcttgt ttggggtcag tcgacggtcg atatcatgtg cctatgatat ggctgtctta 1500 ataaggatgt ttgcttgctc ttttaagtgt tttaattcag atcagaacaa ttgcagtttt 1560 aattcctata taataaagct tagctcttga gcatctgttt ttcttctttt ccccgtctgc 1620 tcttccctcc agatggtcta caccaggact ggtagccgcg caacaggcga gggtagcaac 1680 ggtgaagaac gcgctgatgg tgtacacccc aacagtgatt ccggcaatgt tccgccacca 1740 cttcccgaaa atccgaccct tgcccaagtt atggcgcatc agactcagat gatggcggcc 1800 atgatgcagc agatgcagca gcagcaccag cagatgcacc agaggatgat gcagcacgtc 1860 gaacagcagc accagcagtt tggtccccct ccccctcagt ccaagttgcc tgagttctta 1920 cgtgtcaggc cacccacctt ctccagcacc accaacccta tggaggcgaa cgactggctc 1980 catgcaatag agaagaagct gaatctcctg cagtgcaatg atcaggagaa ggtcgctttc 2040 gccacacacc agcttcaggg tcctgcgtca gcttggtggg acaaccacat ggccacccgc 2100 ccaccgggca ctgaagtcac gtgggcagag ttctgccgta gcttcaggaa ggcacaggtg 2160 ccagatgggg tcgtggcaca aaagaagagg gagtttcgtg cactccacca gggcaacagg 2220 actgtgacag agtacctcca cgagttcaat cgcctcgcgc ggtatgcacc agaggatgtc 2280 cgcaccgacg ccgagaagca ggagaagttc atggcgggcc tggatgacga actgaccaac 2340 caactgatat ctggggacta cgccgacttt gagaggctag ttgacaaggc aattcgtcag 2400 gaggaccaac gcaataagat ggacaggaag aggaaggccg cgcagttcag ggcacctcag 2460 ggaagtcacc agaggccgcg cttcactccc ggacagcagg gtggacctac caccatgatc 2520 gtccgtcagc accgcccgtt caactccagc aacttccacc agggctccag tggcagccag 2580 aaccaccatg gaagtcagcc caaccgcggt gcagctccac gcccaccaat ggcaccggca 2640 cagtcaggcc agcccgcgca agccaagaag gagacgggag taaaaccagg gtcttgcttc 2700 aactgtggcg agcttggcca cttcgctgac aaatgcccga agcccaggcg tgccgggcca 2760 aggtttatcc aggctcgtgt caaccacgca tctgcggagg aggcacaagc agcaccagag 2820 gtcgtactgg gtacgtttcc tgttaactca atccctgcaa cagtactttt cgattctggt 2880 gcaacgcatt ctttcatttc aaagaaattt gtggggatgt atgggttaag gaaagaagag 2940 cttcgcacac caatgagagt tcataccccg ggaaatagtt caacctcagt cagttttagc 3000 ccttcagtgc taatagaaat tcaaaggtca ccatttctag ccaacctcat ccttctcgaa 3060 tccaaagatc tagatgtcat tcttgggatg gattggctga ccaagtttaa gggggtcatc 3120 gattgtgcga accgcaccgt caccttgacc aacgagaagg gagaaaccgt ggtgcacaaa 3180 tcactagtct caccaaagca aggggcctcc ttgaatcaga ttgaagcaga aatcccagtg 3240 gacaccatgg agaagaactt gaggaaattg gaagatatac ccatagtctg cgaatacccg 3300 gaagtgtttc ctgaagacct cactaccatg ccacccaaga gagagattga attccggatt 3360 gacttggcac cgggaaccgc tccaatttac aagagaccgt acagaatggc ggccaacgaa 3420 ttagcggagg tcaagaagca agttgatgag cagctgcaga aagggtacat acgaccaagc 3480 acttcacctt ggggcgctcc ggtcattttt gtggagaaaa aggataagac gaagaggatg 3540 tgcgtcgatt atcgcgcact taacgaggtc acaatcaaga ataaatatcc tttgccgcga 3600 atcgacgatc tatttgatca actgaaagga gctaaagtgt tctctaagat agacctgcga 3660 tcaggctacc atcagttgag aatccgggaa gaggatattc cgaagacggc cttcaccact 3720 cggtacgggc tatatgagtg cacggttatg tccttcggac ttactaacgc acccgcattc 3780 ttcatgaatc tgatgaacaa agtgttcatg gaatttctgg acaagtttgt tgtggtattc 3840 atcgacgaca ttcttatcta ttcaaagtcc gaggaagaac atgaacaaca tctccgtcta 3900 gtactcgaga agttgaagga acaccagcta tacgccaagt tcagcaagtg tgacttctgg 3960 ttgacggaag tcaaatttct gggccatgtc attacagctc agggtgtagc agttgatcca 4020 tcgaacgtgg agtcagttac caaatggacc ccacctaaaa cagtgtcgca gattcggagt 4080 tttcttggac ttgcgggtta ctaccgtcga ttcatcgaaa atttctccag aatcgcccga 4140 cccatgactc agttgcttaa gaaagatgag aaatttaaat ggacaactga gtgcgataag 4200 agtttcgagg agctcaagaa gaaattagta tccgcaccag ttttaattct gcccgacccg 4260 acgaaagact tccaagttta ttgcgatgca tcccgtcacg gacttggatg tgtcctaatg 4320 caagagggca gagtggttgc atatgcctcg cggcagttgc gtccacacga aggaaattat 4380 ccaactcatg acttggaatt ggcagcagtg gtccatgctt tgaagatttg gaggcactat 4440 ctgattggca accgctgcga agtatatacg gaccataaaa gcctgaaata catcttcacc 4500 caaccggacc taaaccttcg acaacgaaga tggttggagc taatcaaaga ctatgacatg 4560 agtatccatt accacccggg taaagccaat gtggtggcag acgctttaag ccggaaaaat 4620 tactgcactg ccctatgcgt cgagggcatg tgtgaggaat tgcggcagga gtttgaacat 4680 ctcaacgtgg ggattgttga acacgggttc gtagccgctc tggaagcacg gcctacgctc 4740 gtggatcaag ttagagccgc tcaagtaaat gatccggaaa tagcagaact gaaaaagaac 4800 atgagagtcg gaaaggctcg ggatttcctt gaggatgagc acggcacaat ctggatggga 4860 gaaagattgt gtgtacctga cgacaaggaa ttgaaggatc tgatactcac cgaggctcat 4920 cagacccagt actccattca cccaggcagt actaaaatgt atcaagacct caaagaaaag 4980 ttttggtggg tcagcatgag gagagaaata gccgagttcg tcgcactctg cgatgtttgc 5040 caacgagtga aggcagagca ccaaagaccc gcaggtttac tccaacctct tcaaatcccg 5100 gaatggaaat gggaggagat tggaatggac tttataacgg gactgccccg gacatcatcg 5160 ggacatgatt caatctgggt agtcgtggat cgactcacca aggtggctca ctttatacca 5220 gtacaaacca cctatacggg aaagagattg gcagaattgt acctcgcaag gatcatgtgt 5280 ttgcatgggg tacccaggaa gatagtatcc gatcgaggta gtcagttcac ctcaaagttt 5340 tggcagaaac tgcaggaaga aatggggacc cgcttaaact tcagcacggc ctatcacccg 5400 caaactgatg gtcagaccga gcgagtcaat caaatcttgg aggatatgtt gagagcttgc 5460 gcccttgatt ttggcggagc ttgggacaaa agcttgccat atgcggaatt ctcgtacaac 5520 aacagctacc aggccagtct acagatggca ccatttaaag ctttatacgg ccggaagtgc 5580 cgcacacctc tcttctggga tcagacaggc gaacgtcaac tattcggaac agaagtatta 5640 gcggaagcag aagagaaagt cagaatcatc agggaaaggt tgaggattgc tcagtctcga 5700 cagaagagct acgcggataa ccgtcgaagg gagctcactt ttgaggcggg agattatgta 5760 tatcttcgtg tcactccgct ccggggagta caccgctttc agacaaaagg caagttggca 5820 ccacgcttcg tgggaccata caaaattttg gaacgaaggg gagaagttgc ttatcagcta 5880 gaacttccgt ccaacatgat cggcatccat gacgtgttcc acgtatccca attaaagaag 5940 tgcttaaggg tacctgagga acaggctgat tcggaacaca tcgatatcca ggaggacctg 6000 acctatgtgg agaagccggt tcgcatactt gataccagcg aaaggagaac cagaaacaag 6060 gtcaccaggt tttgtcgagt tcaatggagt catcattcgg aagaggaagc aacctgggaa 6120 agggaagatg agttgaaagc cgcccatccg cacctcttca ccagctcctc cgaatctcgg 6180 ggccgagatt ccgtttaagg ggggtagg 6208 // ID RIRE3_I repbase; DNA; ORY; 5752 BP. XX AC AP008211; XX DT 10-JUL-2002 (Rel. 7.06, Created) DT 30-AUG-2005 (Rel. 7.06, Last updated, Version 3) XX DE Internal portion of the gypsy-type retrotransposon RIRE3. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW endogenous retrovirus; GYPSY superfamily; Met tRNA as PBS; KW RIRE3_I; RIRE3_LTR; gag; pol. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RA Ohtsubo E.; RT "Direct submission."; RL Direct Submission to EMBL/GenBank/DDBJ (22-MAY-1998). Eiichi RL Ohtsubo, The University of Tokyo, Institute of Molecular and RL Cellular Biosciences; Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-0032, RL Japan (E-mail:eohtsubo@ims.u-tokyo.ac.jp, Tel:+81-3-5684-3269, RL Fax:+81-3-5684-3269). XX RN [2] RP 1-5752 RA Jurka J.; RT "RIRE3: Annotation of a recently inserted copy from rice."; RL Direct Submission to Repbase Update (30-AUG-2005). XX DR GenBank; AP008211; Positions 9459207 9464958. XX CC The original sequence (ref. 1) was replaced by a very young CC copy of RIRE3 with identical LTRs. XX FH Key Location/Qualifiers FT CDS 186..992 FT /product="RIRE3_I_1p" FT /translation="MAGSVTRRGLDMTGFVLELRGMCVVLGYPHGVDYQAR FT PLPEQEGEDAEPHAGWEVTAVILSGSPERTSLAVTAGGDSFPAACQNAALL FT AIGTLHQRYPDELQHSPYRYHPRRGGARDHATFRDASSEDDATVVHLARMV FT EAYDAARIDFHQMVRRGMVENNMKILELRQENLQLKKDLDALEAQLHQLKI FT AQGEGSRPKRRRVCRSQKITARKSTSRPELVRQSLAWTCFVETPRAEPAPV FT VPQEGEASGVGSSEGALLLTFRPGPSQR" FT CDS 1133..5737 FT /product="RIRE3_I_2p" FT /translation="MNQFNSSDKFKNNSSRGWLVLIVSSPSLFAGSVWGFQ FT MVTTRRNVNTGEGNQPEGSNPNPQGNPPPPPPPDTNAILTQILAQQANMMN FT AFLHHLQNPPQQNAPPPPPQHSKLAEFLRIRPPTFSSSNNPVDALDWLHAV FT GKKLDTVQCSDEEKVVFAAHQLQGPASLWWDHFQATQPEGQPITWTRFTAA FT FRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLARYAPEDVREDEE FT KQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKRRLAN FT FRNQQGANQRVRYTNPYPGGSSSQQQQQQPRPAPRPQFVVRVPQQQQQQNQ FT QGTRAPRPPTPAVQPVQGRRDASGPQRLCFNCFEPGHFADKCPKPRRQQGQ FT APPRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVGTFLVHSIPATILFDSGA FT SHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPF FT PSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYRGPEQPVVFFAPP FT TSVRSSELHQISLSEIPIVREFGDVFPEELPGMPPKREIEFRIDLAPGTTP FT LHKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKR FT MCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIRE FT EDIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFI FT DDILIYSQTEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVIS FT AKGVAVDPETVTAVTEWKQPKTVTQIRSFLGLAGYYRRFIENFSKIARPMT FT QLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQG FT LGCVLMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNR FT CEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADAL FT SRKSHCNTLNVRGIPPELNQQMEALNLSIVGRGFLAALEAKPTLLDQIREA FT QKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGKRVCVPESRELKQLILQE FT AHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQR FT PAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIP FT VKTTYGGNKLAELYFARIVSLHGIPKKIVSDRGSQFTSHFWKKLQEELGTR FT LNFSTAYHPQTDGQTERLNQILEDLLRACVLDFGKTWDKSLPYAEFSYNNS FT YQASIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILREAEAKVRIIRDN FT LKVAQSRQKSYADNRRRDLEFAVDDFVYLRVTPLRGVHRFQTKGKLAPRYV FT GPFRIIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIE FT VREDLTYVERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELK FT AAHPDLFASSSESRGRDSV" XX SQ Sequence 5752 BP; 1410 A; 1509 C; 1517 G; 1316 T; 0 other; agttggtatc agagcctccc ttgaccctag gacgagccgt agatcccaag ccttagcaat 60 attttcaaaa ataaaaatcc tttgttattt gtgaaaaccc gctattctct cttgtcttgc 120 tgcttcattt atcgtcaaaa tctggtcttt aaaaatgttg tttctctttt tgtttttgtt 180 tgtagatggc cggcagcgtt acccgtcgtg gtttggacat gaccggcttc gtcttggagc 240 tgcgaggcat gtgcgtggtc ttgggatatc cacatggagt ggattaccag gccaggccgc 300 tcccggagca ggagggtgag gatgcagagc ctcacgctgg atgggaggtc actgcagtga 360 tcctctccgg ctctcccgag cggacttcgc tggcagtcac cgcgggcgga gactccttcc 420 ccgccgcttg ccagaacgcc gctctcctcg ccatcggcac tcttcaccag cgctacccgg 480 acgagttgca gcactcgccc taccgctacc accctcgtcg cggaggagcc cgcgaccacg 540 ccaccttccg agacgccagc tcggaggatg acgctaccgt cgtgcacctg gcacgcatgg 600 tggaggcgta cgacgcggct cgtatcgact tccatcagat ggtgcgtcgt ggcatggtgg 660 agaacaacat gaagatcctg gagctgcgtc aggagaatct gcagctcaag aaggacctcg 720 atgcgttgga ggcgcagctg catcagctca agatcgccca gggagagggc agccgcccca 780 agcgtcgccg cgtctgccgc agccagaaga tcaccgcccg caagagcacc tccaggcctg 840 agcttgtccg tcagtccttg gcgtggactt gcttcgtcga gacccctcgt gccgagcctg 900 cgcccgtggt tccccaggag ggggaagcct ccggcgttgg tagctcggag ggtgcgctgt 960 tgctcacctt ccgtcctggc ccgtcgcagc ggtagacgag cagttagtag gcttgcgcgt 1020 gtgtttttcc tcgtttgtct ttttgagttg tgtggggcat ggttacaccg gtgtgtggtg 1080 caactatgtc ggagcctgtc ttattttgtt tgcctaagca acttgaactt taatgaacca 1140 atttaatagc agtgataaat ttaagaataa tagtagtcgt gggtggttag ttttaatcgt 1200 cagctctcct tctctgtttg ctggttctgt gtggggtttt cagatggtga cgaccaggag 1260 aaatgttaac accggtgaag gcaaccaacc cgagggcagc aaccccaacc cccaaggcaa 1320 cccacctcca ccaccaccac cagacaccaa cgccattctc acccaaatcc tcgcccaaca 1380 agccaacatg atgaatgctt tcctccacca cctccaaaac ccgccacaac agaatgctcc 1440 accaccacct ccccaacact ctaaactcgc cgagttcctc cgcatccgcc cacctacctt 1500 ctctagctcc aacaaccctg tggatgcttt ggattggttg catgccgtgg ggaagaagtt 1560 agacacggtg cagtgcagcg acgaagagaa agtcgtcttc gccgcccatc agctgcaggg 1620 acccgcgtct ctctggtggg accacttcca agctacgcag cccgaggggc aaccgattac 1680 ttggactcgc ttcaccgccg ctttccggag aacccatgtg cccgccggag tcgtggccct 1740 caagaaaaga gaattccggg agctgaagca aggcaaccgc tccgtgatgg agtatttgca 1800 tgagttcaac aatctagccc gttacgcccc agaggatgtg cgggaagatg aggagaagca 1860 ggagaagttc ttggcaggaa tggaccctga gctgtctgtt cgtctagtct ctggagacta 1920 tccggatttc caacgactgg tggacaagag catccgcttg gaggccaagc acaaggaact 1980 ggaatcgcac aagcgccgcc tggcgaattt ccgcaatcaa cagggtgcta accagagggt 2040 ccgctacacc aatccctacc cagggggatc ctcctcgcag cagcagcagc agcaacctcg 2100 cccagcgccc cgacctcaat tcgtggtgcg cgtcccacag cagcaacagc agcagaatca 2160 acaagggact cgtgcacccc gtcctcctac gccagcggtg cagcccgttc aaggccgcag 2220 ggacgcttca ggtccgcagc ggctgtgctt caactgcttc gagcccgggc actttgcgga 2280 taaatgcccg aagccaaggc gtcagcaagg ccaagcgcct ccccgctcca acaacggcgg 2340 gaaggatgtc attcggggtc gtgtgaatca cgtgacggcc gaggacgtgc tgacaactcc 2400 agacgtcatc gttggtacgt tcctcgttca ttccatccct gctacaattt tgttcgactc 2460 tggagcttcc cactcgttta tatctgtgcc attcgtgggg aaaaatcagt tgggggtaga 2520 aaggcttaga aaccctctgc tcatcaccac ccctggcggg gttatgacag caaagtatta 2580 tagccctgcc gtccctatag aaattcaggg gattcctttt ccttcggacc tgattcttct 2640 agacacaaag aacttggatg tgattcttgg gatgaattgg ttggcacaat tccaaggagt 2700 agtggactgc gcgagacgca ctgttactct gtaccgaggg ccagaacaac cagttgtttt 2760 ctttgcacct ccaacctctg tcagaagttc agaactgcat cagataagtc tgtcagaaat 2820 ccccatagtc agagagttcg gagacgtgtt tccggaagaa ctacctggta tgccgcccaa 2880 gcgagagatt gagttccgga tagatcttgc tccaggaacc actcctctgc acaagcgacc 2940 ctaccgtatg gcagcaaatg aactggccga agtaaagaaa cagttggaag agttgaaaga 3000 aaaggggtat atacgtccga gtacttcccc atggggtgct cctgtgattt ttgtagaaaa 3060 gaaagacaag acgaagagga tgtgcgtcga ctacagagct ctcaatgagg tcaccatcaa 3120 aaacaagtac cctcttcccc ggatcgatga tctgttcgat cagcttaaag gtgccactgt 3180 attctccaag attgatcttc gttccggata tcaccaatta cgtattcgtg aagaagatat 3240 tccgaagacc gcattcacta cgcgatatgg actgtatgaa ttcacggtga tgtcgttcgg 3300 cttaaccaat gctcctgcct tcttcatgaa cttgatgaac aaagtgttca tggaatactt 3360 ggataagttc gttgtggttt tcattgatga cattctgata tactcacaaa cagaggaaga 3420 ccatcagcac catctccgtc tggtgttggg aaagttgcgg gaacatcaat tgtatgccaa 3480 gcttagcaag tgtgagttct ggttgtccga agtcaaattc ttggggcacg tgatatctgc 3540 taaaggagtt gctgtggacc ccgaaacagt gaccgccgtc accgaatgga agcaacccaa 3600 gacagttact cagattcgca gtttcttggg tttggcagga tactatcgga gattcatcga 3660 gaacttctcc aaaatcgctc gacccatgac acagttgttg aagaaagaag agaagtttgt 3720 gtggagcccg caatgcgaga aggcgttcca aactctcaaa gaaaagctgg tttcctcgcc 3780 cgtgttaatc ttgccggata ctcgcaagga tttcatggtg tactgtgatg cttcgcgcca 3840 aggattgggg tgcgtgctca tgcaggacgg tcatgtggta gcctatgcct cacgccagct 3900 acgtcctcat gaaggcaact accctacaca tgacttggag ttagcagcgg tggttcatgc 3960 tctaaaaatc tggcggcact atctcattgg gaaccgctgt gaaatatata ctgatcataa 4020 gagtttgaaa tacatcttca cccagtcgga tctgaatctt cggcaaagga gatggttaga 4080 actcatcaag gattatgatg tgggaattca ctatcaccct ggtaaggcca atgtggttgc 4140 cgacgctcta agtcgaaaga gccactgcaa cactctcaat gtccgaggca ttccacccga 4200 gcttaatcaa cagatggaag ccctgaacct aagcatagtt ggtcgcggat ttttggccgc 4260 gttggaagcc aagcccacct tgctcgatca aatccgcgag gctcagaaga atgatccgga 4320 catgcatgga ctcctcaaga atatgaaaca gggtaaagcc gctggtttca cagaggatga 4380 acacggaacc ttatggaacg gaaagcgggt atgcgttcca gaaagcagag agcttaaaca 4440 gctgatactt caggaagctc atgaaagtcc ttattccatt cacccgggta gtacaaagat 4500 gtacttagac ttgaaggaga aatactggtg ggttagcatg aagcgggaaa ttgcagagtt 4560 tgtggctcta tgtgatgtgt gccagcgtgt caaggcagag caccagcgac cggctggact 4620 tctccagcct ctccaagtgc cggaatggaa atgggatgaa attgggatgg atttcatcac 4680 cggccttcca aaaacccaag gtggatatga ttctatatgg gtagtcgtgg atcgattaac 4740 caaggtagct cgattcattc ctgtgaagac cacttatgga gggaacaaac tagcggagct 4800 ctacttcgct aggatcgtga gtctccatgg tattcccaag aaaatcgtat ctgatagggg 4860 aagccaattc acctctcact tttggaagaa gctccaagaa gagctgggta ctcgattgaa 4920 ttttagcacc gcctatcacc cgcagacaga tggacagacc gagcgtctaa atcagatcct 4980 agaagatctg ctccgcgcat gtgtactaga tttcgggaag acttgggata agagtctccc 5040 ctatgccgag ttctcctaca ataacagcta tcaagccagc atacaaatgg caccttatga 5100 agcgttgtac gggcgcaaat gccgaacacc gctattgtgg gaccaagttg gagaaagcca 5160 agtgttcggg actgatatcc tgagagaagc tgaagctaaa gtcagaatca ttcgggataa 5220 tctaaaggtg gcacagtctc ggcagaaaag ttatgcagat aaccgtcgcc gtgatctgga 5280 attcgcagtg gatgattttg tgtaccttcg ggtcacgcca ttgcgaggtg tgcacaggtt 5340 tcagacaaaa gggaagctcg cacctcggta tgtgggtccc ttccgtatca tcgctcgacg 5400 tggagaagtt gcttaccagc tggagctgcc cgcctccttg ggtaacgtgc atgatgtgtt 5460 ccatgtgtcg caactcaaga aatgtcttcg agtgccatcc gagcaggccg actcagagca 5520 aattgaagtt cgcgaagact tgacctacgt ggagaggcca gtgaaaatcc tggacaccat 5580 ggagcgcagg accaggaacc gggtaatccg tttttgcaag gtccagtgga gcaaccacgc 5640 cgaagaagaa gctacttggg agcgcgaaga cgagctgaag gcagcccatc ccgatctctt 5700 cgccagttct tccgaatctc ggggtcgaga ttccgtttaa ggggggtagg tt 5752 // ID CLOUD-4 repbase; DNA; ORY; 520 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 04-AUG-2002 (Rel. 7.07, Last updated, Version 1) XX DE Rice Mutator-like non-autonomous DNA transposon CLOUD-4. XX KW DNA transposon; Transposable Element; Nonautonomous; CLOUD-4; KW Mutator-like; non-autonomous; target site duplication. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-520 RA Jiang N. and Wessler R.S.; RT "CLOUD-4: a Mutator-like non-autonomous DNA transposon from Oryza RT sativa."; RL Repbase Reports 2(7), 11-11 (2002). XX DR [1] (Consensus) XX CC 9bp target site duplications. XX SQ Sequence 520 BP; 170 A; 105 C; 104 G; 141 T; 0 other; gagtaaagta tacgggcggt ccttaaactt gtaggggtgt gtcatctagg tccctaaact 60 ctcaaaatgc atatccaagt cctagaactt gtcatagtgt gtcatatagg tcccaaatcg 120 ccacaacccc ttcagcattc tatgtggcgt tgatgtggca taccacatgg acatgccgtg 180 gcatcatttt gactgacaaa taggacccat ttaaattttt tttctttttc tttttccctt 240 tcgtctcctt tctctgtgac ccgagcaaaa gaaaggaaaa aaaaagaaga atgagaagaa 300 aacgaaaaag aaaaataaaa gaagaaaaaa aataaaaagg acacgtcacg tccatgtggt 360 atgccacatc agcaccacgt aggattctag aggggatgta tcgatttggg acctaaatga 420 tacactttga caagttttag gacctgatat gtattttgag agtttaggga cctatatgac 480 acaaccctac aagtctaagg accgctaatg cactttactc 520 // ID RETROSAT3_I repbase; DNA; ORY; 5393 BP. XX AC AF172282; XX DT 28-MAY-2005 (Rel. 10.05, Created) DT 28-MAY-2005 (Rel. 10.05, Last updated, Version 1) XX DE Oryza sativa gypsy-type retrotransposon RETROSAT3_I, internal DE region. XX KW Gypsy; LTR Retrotransposon; Transposable Element; RETROSAT2; KW RETROSAT3_I. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-5393 RA Tarchini R., Biddle P., Wineland R., Tingey S. and Rafalski A.; RT "The complete sequence of 340 kb of DNA around the rice Adh1-adh2 RT region reveals interrupted colinearity with maize chromosome 4."; RL Plant Cell 12(3), 381-391 (2000). XX DR Genbank; AF172282; Positions 250833 245441. XX CC RETROSAT3_I is 77% identical to RETROSAT2_I. The corresponding CC LTRs are 85% identical. XX FH Key Location/Qualifiers FT CDS 754..5376 FT /product="RETROSAT3_I_1p" FT /translation="APCFSSFSHISTYPLQMETRNGSRDSNNASGSEEPIN FT GARANGASDNSPSPPPENPTIAQVLDNQTQMMTMMMQQMQQQYHQVLQQVQ FT QQAQLQQQNLQFGPPPPQSKLLEFLRVKPPTFSSTTNPIEAHDWLHAIEKK FT LNLLQCNEQEKVAFATHQLQGPASIWWDNYMVTRPAGAEVTWTEFRHSFNK FT AQVPEGIVGQKKREFRSLQQGTRTVIEYLHEFNRLARYAPEDVRTDAEKQE FT KFMSGLDDELTNQLISRDYEDFEKLVDKAIRQEEQCNKMNRKRKAAQFRTP FT QGKCQKPRYTMGRHGGPSTMIIRQHRPYHPGSFNKTHHSDSHNNSGSHSSL FT NPTPSPLMIPAQSDQPALPEQPKRLVEKPELCFNCNKPGHTVGKCPKPRRA FT GPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPAVILFDSGATHSFISKR FT FAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGSIFPANLILLE FT SKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGEVVIFQSPVPQKPGISL FT NQAAGEEQEVAVEKTTKKLEDIPIVREYLEVFPDDLTTMPPKRDIEFRIDL FT VPGTAPIHKRPYRMGANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEK FT KDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYH FT QLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEFLDK FT FVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLKEVQF FT LGHIVNAQGVAVDPANVESVTKWTPPRTVTQVRSFLGLAGYYRRFIENFSK FT IAKPMTQLLKKEEKFIWSAECNRSFEELKRRLVSAPVLILPDQTKDFQVYC FT DASRQGLGCVLMQDGKVVSYASRQMRPHEGNYPTHDLELAAVVHALKIWRH FT YLISNRCEVYTDHKSLKYIFTQADLNLRQRRWLELIKDYDMGIHYHPGKAN FT VVADALSRKSYCNVAWVEQLCCEVQRDLEHLNLGIVEHGFVAALEAQPTLV FT EQVRIAQASDPEIAELKKNMRVGKARGFVEDEQGTIWMGERLCVPENKELK FT DLILTEAHQTQYSIHPGSTKMYQDLKENFWWVSMRREIAEFVALCDVCQRV FT KAEHQRPAGLLQPLQIPEWKWEEIGMDFVTGLPRTSSGHDSIWVVVDRLTK FT VAHFIPVHTTYSGKKLAELYLARIMCLHGVPKKIVSDRGSQFTSKFWQKLQ FT EELGTRLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGAWDKSLPYAE FT FSYNNSYQASLQMAPFEALYGRRCRTPLFWDQTGERQLFGTEVLNEAEEKV FT RAVRERLRIAQSRQKSYADNRRRELVFQVGDYVYLRVTPLRGVHRFQTKGK FT LAPRFVGPYRILERRGEVAYQLELPSNMLGIHNVFHVSQLKKCLRVPEEQA FT SPDQIEIQEDLTYVEKPTRILETSERKTRNKVIRFCKVQWSHHSEEEATWE FT REDELKATHPHLFASSSESRGRDSV" XX SQ Sequence 5393 BP; 1482 A; 1200 C; 1353 G; 1358 T; 0 other; agttggtatc agaaccgacc ttgaccgtag gacaagccaa ctggaaacct aagagccctc 60 tgaacccctt tttcatctgc atatgccttt ttgcacctgg aattgtttcg ggaaaatttg 120 gagttttgcc tctttggttt gcgggaaaaa tcttggtcgt tctttcggat cggatttttt 180 tttaaaaaaa aaaatattag ctcagtctag ggctttagaa aaattttagt tggagtttat 240 tcgacagtca gtcgggaatt tattgggggt tatgcattag gtcgtgtcta tattcgatgg 300 gggcaatgtt atgcgcatcg ttttccatgc aactagtcta tgcattaatt tattgtttag 360 ttgcattagt gtctttattt gagttcatga aaaatgttct atgcataaaa atcatcatgc 420 tcggttattt atttgagttt tcttttgctt tgtttaattt gggtttgagc atggattggt 480 tcctatccct tgtctacttt agatgtcagt cctatccctc gtttgcaagc gccgcctcga 540 gcttcagagt cgccgccctt agctttatcg tcttcttagt ctggttgctt gctagttttc 600 gtgtttaggt ttgttgcttg tgggctagtc ggcggccgat atcatgtgtc agtggtatga 660 ctgcctcaat taggagttgc gtgcctcttt ttcagtgttt taatcaagat taagataatt 720 gcacttaaat tcataagcaa gattagtttc tgagccccct gtttttcttc cttttctcat 780 atttctacct atccccttca gatggagaca aggaatggtt cacgcgactc gaacaacgcc 840 agtggcagcg aagagccgat caatggagca cgtgccaacg gtgcatctga caacagtccg 900 tccccaccgc ccgagaaccc aacaattgct caggtgttgg acaatcagac tcagatgatg 960 acaatgatga tgcaacagat gcagcaacag taccatcagg tgttgcagca ggtgcagcag 1020 caagcacagc tgcagcagca gaacctgcag tttggtcctc cacctcctca gtccaaactg 1080 ttagaatttc ttcgtgtcaa gccgcccacc ttctcaagca ccaccaaccc aatcgaggcc 1140 cacgactggc ttcatgccat tgagaagaag ctgaatcttt tgcaatgcaa cgagcaggag 1200 aaggttgctt ttgctacaca ccagctacaa ggtcccgctt ctatttggtg ggacaactac 1260 atggtgaccc gtccagctgg ggcagaggtt acttggacag agtttcgtca tagtttcaat 1320 aaagcacagg ttcccgaggg aattgtggga caaaagaaga gagagttccg ttccctgcaa 1380 caaggaacca gaacagttat agagtatttg catgagttca accgcctcgc gcgctacgcc 1440 cctgaggacg tgcgtaccga tgccgagaag caggagaagt ttatgtctgg tcttgatgac 1500 gaattgacca accagttgat ctctagagac tatgaggact ttgagaagct tgtggacaag 1560 gctattcgtc aagaggagca gtgtaacaaa atgaaccgta agaggaaggc agcccagttc 1620 aggactcccc aggggaagtg tcagaagcct cgttacacga tgggacgtca cggtggacct 1680 tccaccatga ttatccgaca gcaccgtccc taccacccgg gtagcttcaa taagacccac 1740 catagtgata gtcacaacaa cagtggcagt cacagcagcc tcaacccgac tccaagtcca 1800 ttaatgattc cagctcagtc agatcagcca gctctgccag aacagcccaa gaggttggta 1860 gaaaaacccg aactctgctt caattgtaac aaacccggac acacggttgg aaagtgcccg 1920 aagccaagac gtgccggacc caagttcgtt caggcccgtg ttaatcatgc atctgcagag 1980 gaggcgcagt cagcaccaga ggttatattg ggcacattcc ccgtcaactc gacaccggca 2040 gtaatattgt ttgattctgg tgcaacccat tcctttattt ccaagcgttt tgctggtgca 2100 catgggttat ctttagtgaa gcttaagata cctatgcgag tgcatactcc tggaggtggc 2160 atgaccacaa ctcactactg cccatctgtg acagttgaaa ttcaagggtc gatttttcca 2220 gccaacctca ttcttctcga atccaaggac ctagacgtca tacttggaat ggattggttg 2280 acaaggcaca gaggagtgat tgattgcgcc agccgcacca tcaagttgac caatgcaaaa 2340 ggagaggtgg taatcttcca gtccccagtg ccgcagaagc cagggattag tttaaaccag 2400 gctgctggtg aagaacaaga ggtagcagtg gagaaaacca ctaagaagct ggaggatatt 2460 cccatagtca gagagtatct agaggttttt ccggatgatc tgacaacaat gccaccaaaa 2520 agggatatcg agttccggat tgacttggta cctggaactg caccgatcca caagaggcct 2580 tacagaatgg gagccaacga gttggcggag gtcaagaagc aagtcgatga acagttacag 2640 aagggataca tccgcccgag cacgtcgcct tggggtgctc cggttatctt tgtggaaaag 2700 aaagacaaaa ccaagaggat gtgcgttgac taccgcgcac tcaatgaggt caccatcaag 2760 aacaagtatc ctttgccaag gattgatgat ctgtttgatc agttgaaagg agctacggtg 2820 ttctctaaga tagacctgcg atcaggttat caccagttga ggatccgcga agaggatatt 2880 ccaaagacag cattcatcac tcggtacggg ttgttcgaat gcacagttat gtctttcgga 2940 ctcactaatg cacctgcctt cttcatgaat ttgatgaaca aggtgtttat ggaatttcta 3000 gacaagtttg tcgtggtttt tatcgatgac atacttatct actccaagtc cgaggaagaa 3060 catgagcagc atcttcggct ggtacttgaa aagttaaaag agcaccagct atatgccaag 3120 ttcagcaagt gcgacttctg gcttaaggaa gttcagtttc tcggtcacat cgtgaatgct 3180 caaggagtag ctgtggatcc agccaatgtg gagtcagtta ccaagtggac cccaccaagg 3240 acagtcactc aggttcggag tttcttagga cttgcgggct attaccgccg gttcattgag 3300 aacttctcta aaattgctaa gccaatgaca cagctattga agaaggaaga aaagtttatc 3360 tggtctgctg aatgcaatag gagttttgaa gaactcaaac gacggttggt gtctgcacca 3420 gtcttaatcc tgcctgatca gacgaaagat ttccaggtct attgtgatgc atctcgccag 3480 gggctaggat gtgtgttgat gcaggatggc aaagtggttt cttatgcttc acggcagatg 3540 cgtcctcatg aaggcaacta cccgacgcat gatctggaat tagccgcagt tgttcatgct 3600 ttaaagattt ggcggcacta tctcatcagt aaccgttgtg aggtatatac agatcacaaa 3660 agtctaaagt acatcttcac tcaagctgat ttgaatctca gacagcgaag atggttggag 3720 ctgatcaagg attatgatat gggaatacat tatcatcccg gcaaggctaa tgtggttgca 3780 gatgccttga gcaggaagag ctactgcaat gttgcatggg tagagcaact atgttgcgag 3840 gttcaacgcg atctggaaca tctgaacctt ggtatagttg agcacggatt cgtggctgcc 3900 ctagaggcac agcccacact ggtggagcag gttcgcatag ctcaagcaag tgatcctgaa 3960 atagcagagc tcaaaaagaa catgagggtc ggaaaagccc gaggttttgt tgaggacgaa 4020 caaggaacaa tctggatggg agaaagattg tgtgtacccg aaaacaagga attaaaagac 4080 ctgatactaa ccgaggctca tcaaactcag tattccattc atcccggtag tactaagatg 4140 taccaagacc tcaaagagaa tttctggtgg gtcagcatga gaagggaaat agctgaattc 4200 gtagcactct gtgacgtctg tcaacgagta aaggcagaac accaaaggcc agcaggtttg 4260 ctacagccac ttcagattcc agaatggaag tgggaagaaa tcggaatgga tttcgtcacc 4320 ggtttgccca ggacgtcatc ggggcatgat tctatttggg tagtcgttga ccgactcacc 4380 aaagtggctc acttcattcc ggtgcacact acctactcag ggaagaaatt agcagaactc 4440 tatctggcaa gaattatgtg tttacatgga gtacctaaga agatcgtgtc tgatcgagga 4500 agccaattca cttcaaagtt ctggcagaaa ttacaagaag aattgggaac ccggttgaat 4560 ttcagcaccg cttaccatcc acaaacagat ggccagaccg agcgagtcaa tcaaatacta 4620 gaggatatgt tgagagcctg tgcgcttgac tttggtgggg catgggacaa aagcttgccg 4680 tatgctgagt tctcgtacaa caacagttac caagctagtc tgcagatggc accatttgaa 4740 gcactgtatg gacggaggtg tcgtactccg ctcttctggg atcagacagg ggaacgccag 4800 ttgtttggta cagaagtttt aaatgaggca gaagagaaag tcagagctgt tagggaaaga 4860 ttgagaatcg cgcagtctcg gcagaaaagc tatgcagaca accgccgaag ggagctcgtt 4920 ttccaagtag gggattatgt gtatctccgt gtcactccgc tcaggggagt acatcgcttt 4980 caaaccaaag gaaagttggc accacgcttt gtgggaccat atcggatttt ggaacgtaga 5040 ggtgaagttg cttaccagct cgagcttccc tccaacatgc ttggcatcca taatgtgttc 5100 cacgtctccc agttgaagaa atgtttgaga gttcctgagg aacaggcaag tccggatcaa 5160 atcgaaatcc aggaagactt gacgtatgtg gagaagccaa ctcgtatcct cgaaaccagc 5220 gagagaaaga ccagaaacaa agtaataaga ttctgcaagg ttcagtggag ccaccactca 5280 gaggaagagg ccacttggga aagagaagat gagttgaagg ccacccaccc gcacctcttc 5340 gccagctctt ccgaatctcg gggtcgagat tccgtttaag gggggtagga atg 5393 // ID LINE-3 repbase; DNA; ORY; 10975 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE Rice long interspersed nuclear element LINE-3. XX KW LINE; long interspersed nuclear element; LINE-3. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-10975 RA Turcotte K., Srinivasan S. and Bureau T.; RT "Survey of transposable elements from rice genomic sequences."; RL Plant J 25(2), 169-179 (2001). XX DR [1] (Consensus) XX SQ Sequence 10975 BP; 3216 A; 2526 C; 2688 G; 2545 T; 0 other; ccacgctaca ctcctaagag atccccaaaa aaagcaacgt cggctaaaga ccacagctgg 60 ccctccgagc gggtggactc cataaccact gcgaccgaag cgagcgcaga gtcgaaaacc 120 ctggagtttc gttccttcca cagctgccag gagactagga gtaccaagga gtcgaagccg 180 ctgcagtggt gctcaggtaa acaggccctg gaggatgacc accaatcctg gagccagctg 240 ccacgaaggg gagagagggc agcccagcca ggaggggaca tcacacggag ccagacctgc 300 cgagcgaaca cgcaatcgat gaggatgtgg ttcgccgtct caagcttctg agcgcaaaag 360 gggcaagcag agtggctatc gataccacgc ttttggagaa gatcggcagt ccagcagcgc 420 tgctgaaatg caaaccaaag gaagaacttg catttagcag ggcccttcgc gtgccagagt 480 aggtcggcac aggcaaaaga gtgctggcca aggaagaacg cccgatacgt cgattgcgtt 540 gagtagcact ggtcacccgt ccaacgccag gcgaggtgat cctcaacacc cgatgagagc 600 tgggtaggaa gcaccgcatc ccagactaac aggaactgag agatgaccgg gacagtgagg 660 gcgccacata tgtcaccaac ccaggagttg ttcgctaacc caacggcaac cgtgcgcgat 720 ccccgaaagc gtggaggcac ggcgtggagg aggtcaggag ctatagaagc tatcgagcga 780 ccatcgatcc atcggtcagt ccagaagagc gtggactgac catctcccag gatagagaag 840 gtggatgctg caaacatgtc ggagacgctc cactcaacag gggccttcag aacaaaccag 900 tagtgatgtc ccgagtgctg aagccagagc caacgaactc tcaaggcaaa gccagccatc 960 atgagatcca taatgcccag tccactgaga tccctaggac gacaaaccct cgtccaggac 1020 acccggcact atcccccatt ggccgagtcc gtacccgtcc acaagaaggc gcaacgcttc 1080 ttgtcaatgg ctttgataac ccagcttggc aagccgatcg ccatagaaac atggactgga 1140 atggaagaga gaaccgactg gactagaacc gagcgacccg ccagagtggt gagacggccc 1200 ttccaggagg gagccgatgg gagactttat ccacaagcgg ttgcagggcc gcttttggca 1260 gcttgcgaac tgacagtgga atgccgaggt aggtgcaggg aaactccgag attgagcaag 1320 gaaaagagga ctgaaccagt ttcaggtcaa gaaccgagca gcggatcgga gtaatcgagc 1380 acttggtgaa gttggtccga agcccagaag cggcaccgaa gacagagagg atgccttgga 1440 tgaactcaag gtcttgccga acgggggaaa ggaagagaac tagatcatcg gcgtagaggg 1500 atgcacgatg tcgaatagca cgatcattga ggggaagaaa accacccgag tcaaaggctt 1560 tgcggagcat cgcattgagc acatccatga ctagaatgaa aagcatgggg gaaagaggat 1620 ctccttggcg aagacctctc cgatggggga accgtggacc tggcacccca ttaaccagca 1680 cccgggaaga ggaggcactg agaatgaggg agatccaatc acgccaacgt tgactgaagc 1740 caagttgggc tagcacctca agcaagaaag gccagctgac cgtgtcaaag gccttcgcga 1800 tatccacctt gagaagaagt cagggaacgc gtttggcgtg gagcgccctt gccgcaagct 1860 tgacatagcg gaagttgtca tgaagagagc ggcccttgat gaaagcgctc tggttagacg 1920 ccacaagctc gtccaggcga ggggagagac gagaggccaa gatcttggag aacagcttcc 1980 caaagctgtg gataaggcta atcagcctaa aatccttaat gtcaacagcc tcgtccttct 2040 tcggcaagag ggagatcagg gcgttcttaa attactgtat gactataggt gtaatgtctt 2100 caaataaatt ctcattgtaa ttcaataagt taatgaatct gcaaatagtt cacgtaaatg 2160 gaacataatg cttgatctca aatgacaaag aaacatatat agtatgggca tcttatccct 2220 gatcaacatc acaaagaagg attcatcatt ttacagtgtt aaatgaaaac atgcagcatc 2280 aaatctattg cagccggatt atgagccacc cctgcaacat gaaaattcac atttatattt 2340 gcatggatct atgactcgta cagatttgaa aggcatgaac aatctaacct gtgaagtaat 2400 tccagtagta aaatggaatg cattgtcaat aaattgtagt aaaaaaacaa aaaaactgta 2460 ccaactgaaa acctttcaaa agaggaagga gtcaaaccat atcaagcaac gaggtttcaa 2520 aatgaaatca ttttgtgtaa taagtatata tactactgaa atagtgagag cagagcacta 2580 tatgagttgg catcaatacc ccagatatta tgcagtgaat caggcatcaa gaatagccaa 2640 agttaatcag aaagttgaaa aatagtatat acaccttatg aatttgtctg caatttagat 2700 attcttttac aagattgctc catcactctt ttatggtcaa tattctcaac atgattgaag 2760 aacaatgttc aatattgtta tacttatcct acctattgtg tgataatcca caatcatttc 2820 tgacacaatg tgatatatgt ctaaagaagt ggtccttcta agatcatatg ccaccaaacc 2880 actattgaat tcatcactga gaatagatat tttgtggcac agctcaggtt attagaaggg 2940 agctatttac ctgaaatgct tttggacatc taccatttga cgctgcaaag caaccaaggt 3000 aacatgataa ttcctgccaa aaaaaaaatt gactgaataa gcaactgaat atcagagaca 3060 ggatgcagga aacaaagaaa tttcaacaac tgttatgtca tccttgttga attgttgaga 3120 tgaacctcaa caatctgacc cctgcgatag attcaaaagc atatggagtg caattttttc 3180 tttgtatttt attccatgat agtgaataag tcggcagcga tggaacgatg ggcggaggtc 3240 aatggcgagg aagcgggatc aggcggtgat gtagtcttcg agatgataat atcgctgaga 3300 tggatgtata cggcaagatc agcttaccaa gctcagatca gttcataatt ctctcactgt 3360 cccactttga tctggaaagt tccaagtgct gaatttatgt gtggcttggc tactgatttc 3420 aaaacaggat atggacagct gatcgcctgc aactacgggg ctggtaaaac aacaacatga 3480 gatggcattc tgggaggctg tggaagcacg aatgaagtat tcacaactca aagcgtgccc 3540 cgggaatcct tgttggataa ttaaccacgg accaagaaaa cgaacaaggg cagagtcaaa 3600 tctctttcaa tcccggtttc ttgggagttt ttttatcgct gagatggata gctattgaaa 3660 gagaacaagc gcagaagaga ctggatggat agctggagga gcgaggggtc tgtcaacgat 3720 ttatgtattg cactccagag agagtaacaa catcccaaaa cgcttctcat agaatagaag 3780 caatcagtta tctgttgtac aatgaactaa tgaattgaat tagttcgcct gtaagctgag 3840 aagctaactg gcaagagggg acagaggccg gacgaccggc agaaagaacc taaggaacgc 3900 ttcaaataga acccatcttg gaggacctct agcattgtga ctgtcgagaa cttcaatgtg 3960 caattcccgg ccaaaagggg ttgccgaaaa ccggtatgca tagcatacaa cggcatgcag 4020 agaggccgtt tggttgtcaa ccaagaacgc tgggcagcct ctgtacaccc tcctggcatc 4080 cttgtcagca tcgcaaccgg agtatccctt tggggtagcc cagaggaccc caatgacagg 4140 gccattcgaa catggagaaa agcatttgaa ttgtagtcct gtagggtcca acaaatctac 4200 ggtatctctc tatctgtagt agagccatac cgtcagtcgt tggtagccct ccgatgtcaa 4260 tgattacatc cagcaccctg tcagatttcc caccactttc ctgtgaccag gcattcctct 4320 taaggcattc ttttctgagt tttgcagggg gtgattctac cctccatgca aaggatcctc 4380 tcccatggat tctctcaaac gcaagccggt cgatacatac actgcacgcc gagagcgagc 4440 agcctcctgc accatgcata caatacatac acagagagat cagtcagtga gagggtggag 4500 aaattagtca atcaatgaga gagcaggtat tactattcca gttaggagct tcacctgcgt 4560 attgaataat tggtgagccc attacttctt cccaactgta ttcattcggt actaatgctt 4620 ggtgaatccc tgccactact ttccacttaa aatttcttaa gctgcaaacc cagtcagata 4680 gaaactttgt gcagtacaca ggttttgcat cagccttctg cactgaggcc tcctccaaga 4740 gtgatatgtt cattccctca tattcctctt cattcctatc cttgtaatct gcaagcattg 4800 tgcaatttgt tcgtcatgtg actagaagca gaagcatgaa caaacataac aatgtactac 4860 tactactaca aattaacctg gtagatctgc aagacccatg cagctaacag cctcaattac 4920 tacttctagt tttggacttg agcttgttgg agctagcgag gacaaaaact acctgaacga 4980 attgctacac tactagcttc atgctaaact caatctctca ggcagacatg gagcaatgag 5040 cgaatacatt ttttaaggta ctagctgcta ttccctccat tctaaaatat aaacacatgt 5100 agcatttgag atctgtacca aattacaagt acttctaaag cactcaattt agaagtgctc 5160 ttcagtgaaa tgtttgttta ctgaaatata aacacatgca acaaccttat ttcagtgaac 5220 atacaagaaa aacaaaacgc tggacaatgg ggaaggaccc aatgtggaat ttatcaagaa 5280 agagggtgag cgtgtccggc cagagtcgaa cgcgggtcgc ggggagcaca acggctgcac 5340 catgccatct gcgctacacg cagtctccag tgaacatata agcattcact cagtttcagt 5400 taacatatgg agctaatttc agaaatatga ggagcaggct atgggctgtt ttcaatgatg 5460 ataccagtta ataagagaga gccagtgttt agactgaaaa catctatcag aacaatcatg 5520 ataataaata ttggttatat cgttacctga tacaatgtga tgtatatgga gcccactgct 5580 tctgagaagc agacgaaggg agatgaacgt ctgcaacgga aaacacacaa gggaagcaca 5640 tgatcaacaa ttgaatcagg aatttcacat caagatgtag ctacccccag gcatgatgaa 5700 agaatttgtt ttttaggcgg aaaaggggaa taaccagaag aaacacggcg caagagaggg 5760 ggtgcaagaa accccatgag aatgacatgg cggtggcaat gttgagcgaa tcaagaacaa 5820 gaaacagact taattacccg aggacgccgc ttgcacacgg atgtcctgtt cttgacgccg 5880 ggttcgcggc caggcgacac tgacacctgc tcgcggatgg ccagcgtctt cttgttgttg 5940 tgcacatgta gaaggccggc gtcaccgccg tagatggggt tcggaatcac aaccctgcac 6000 cggcggaagt cgcggcacaa ggagaagagg ctggtgacgt cgtggcccag tgagaggggt 6060 tcttaatcgc cgatgggcga atccgatagc gtcgtcgtgt gccagcgcag tacgccggtg 6120 acgccctcgc cgccgtggaa gggggtcggc atcgcgcccc cgcgctggct gacgtcgtgg 6180 cccaggggcg cctgctcgag ctccagcagc atcttcttgg ggcggtgaag aatgcaggtg 6240 acgccctcgc cgccatggaa ggaggccgaa tcctcctcga attccatttc cccgctgcga 6300 acttcacggc cggtggttct tgctctcttg gttcaatagc tggaagagag agagaattgg 6360 aggccgttgg gttagagcgg gtactagtat ttgaagcccg cacctgtacc gacttgaggc 6420 ccctcggctc ctgagatcat gccacgtgtc taagtattcc ttcatcccct tctccccact 6480 gccatggcgg cttctttttc ttgccttcaa acaaacaaca gagtgaacaa accacactgt 6540 attagtcctc accagaaaag ctctaaacag ataatagtac tgagttatgg taatcctcgg 6600 gggcaaggag ctatccatgt caagattagc aggcttttct ttatgtgtta tcatgtcaca 6660 agagaatttt gccaagaatg aatattgcaa gttgatcatg cattccgtta ctcttcccag 6720 gtgcaaaaca ctatatacac gcaaaataaa taaatcatgt ttattgcttc tgcaaatttc 6780 ctttttctag ccaaatacac aactactgca gcagatatct cagaatacag catcagggct 6840 ggttcaatat cccaatttgc agcaactggg taaaagggct tttgtcacca gtctcaagtc 6900 agtgcacctc cagagtccag agtgacaaag aggtgtttga tctgagcagg ttcttcatgg 6960 agaactttgc tccgcatata ctgcttcact tggtcttcct gctacctcaa agattcattt 7020 tgttagccac acaaagaatg tgccaaacaa gtatattggg gacatcgatg tgaaaacaag 7080 ttccaaacct caagctatag aaattaatcc acaggtcaac agtaacttaa ttgtggatga 7140 tggagatgga aatatccttt attccaagga gtcttgggtg atggtcttga tgatgtcctt 7200 tatcctcagg gagtcaactg cagacacaaa tattgaacca gagaaagtca cacagtacat 7260 cccgggaatt acttccacct tccaactttc agcccaccat tctttttgta gatattgctt 7320 tgtgctgttc tattctaaac ctattgtcat tgtcagattg agaaataagc ccataaaaat 7380 cactttcagc ttgaatggta aagatgttga ttaacaaaaa caagtctcac attcaagtga 7440 ttctcaagag taccaggtat ctgtggtgat actaaaaaat gacttaatga gtcgtttaag 7500 gacaatggat gataactcat ggcatcgtcc acatgacaag acttctgcaa caactcaaga 7560 aaacaccact cgagttcatg cgagtgtact ccctggtaat ccggttgcac tctgaaagtt 7620 gtactgtcac catggtcact gcataatgag gttttgtaat ggctgcaaga actcagttga 7680 caattgcagc tcacaaagca gatgtacatc aatgcttctt cgctcatttg aagtttaaaa 7740 agtgaactat ggtgtatgtt atgatgagaa aaatgtcgat gattgactgg gctttcaatg 7800 tcatacctgc tgtgggagtc ctgctgatgt tgtgtctgct cctgctgctg ctcatgattg 7860 ccattatcac atattcaaag tagttttgcg tgctaggatg ctgtgcattt ggtgcaccat 7920 agtatgcatc acagcccgta tccttagtag ttgccattcc actggctggg atcctgctgg 7980 ggaggcctga aattcagtca gctggcatta caggttttgg ggttaaccta tgcacatgca 8040 tgctgcagct cgcataaaca accaaggatt aaactctgta cagaaacctg tttgttctga 8100 tgaggagagc agccccatga aagccgaact tggtacccac ctatcggaga tacactccaa 8160 acacggatgg atggtttctt tagcggatga cctgaaagta gaataatata accaaagcaa 8220 caaagaatca tatgtactga tagtattagg tgaagatgat tacaaagaaa gcttgaagaa 8280 ttcattaatc tgctgctagt aaattgggca aatccacgga gctttgccta gagaaatctt 8340 cacatgacca atttcagcac atgattgaga tggttctcat ttacattgga atctatgggg 8400 gcagcacaat acgaaaaatc agttgcgtca aaaaaaaaaa ggaaaaaaaa tcaggaaaca 8460 gcaagtcgta gaattaaata atgagaaagt taatgattct cgaaattgtt tccttgggag 8520 ctccagctct ggtaagctgc aattagaaaa catatataat aagcaccata agttgagaaa 8580 gatcaccata ggatgctgat gctatatagt aaaaaagtat ggaaaacccg aaatcaaagt 8640 tagcaaccat gtttgctagc cagacgccca gacccaaaac aaacaggcca ctgaagacaa 8700 cagattcagt gttaccatgt tgataagtaa actaaatttc ttccttaata atctatggga 8760 tgatgaaagg aatacaagca atccttactt gatgaaggtg atttgacaaa ctagtgaatg 8820 tattgtatca gcttggctga aaaaacaaga aaagactgaa tgcatttagt aattagccaa 8880 tattgtgacc gaatctgaat tgtcgtgcct ggttgcgggc ttgtgatgtg ctttgaagag 8940 gtggcggggg ccgggaggag gaggacgcgg ccagcgcgcc ccgtcctccg ccgccgagcg 9000 ccgactcctc cccacttcca caaccacatg gcgccgccgg agttggaggc gccgaggcag 9060 ccggagcagg agtggtcgcg gtcggagccg acggcaagag gggcgcacga agtacgcccg 9120 cggcggaaca accaggactg agaaggcgat gcaggcggcg gcggcggcgg cggcggcgag 9180 gaataggaag ctaggagcat aattttcaac ttctgagccg ttggatctga caagtgacga 9240 ggcctccctc accctaccac tcttctgcgc aagtcttttt ctttttcttt taacagaaaa 9300 aaaaaaccca acttggaagg gaccgatcgc acaaacagaa gggtgtatgt ccgcgtgtaa 9360 aaaaaaaaaa gtataggcgg ggatgattca cacatgttgg gggagtggct ccggttgacg 9420 gagctggcct ccgtcagtgg ggaaactcta ctcggagcca tccaccaagg gagaatgacc 9480 gaaggtttcg gaaccaaccg agagctccgg agcacatcac cagctccgga gcagactagc 9540 cgccctgaag cctgtcatag gctccggagc atatcaacga cgctggagct aaccaatagc 9600 tccgaagcag atcaagggct ccggaatatc cggggaccca aagtatccaa gcatgaagga 9660 atggcgcacg agcgtagtgg ggcgccataa atacgcatta cgcgtccgcc aaccacctct 9720 gacattctga caggggcagg gcggcatcca ctatcatccg ggggcatgcc tttacccgga 9780 taatagccat caccctcgga aagcgtcacc gcatccttaa tgggcgcagc ctttcctgtc 9840 acttgggatt ttaacgattg cccaagggct agcccatcgg ccggccacac tacatctgtt 9900 ttagttagag caaagatgta actttctctt gtatccctag tatatgtaag cattgcccac 9960 agttaagggc aaattgaata cagaatacac attgaataca ttgtttggac tttgtcccaa 10020 caacacgtct aatatcatta gtggaactag ttgcctctat tggaattaat ctcacatata 10080 atatgatcat ggcatataac ttatacatgt gtacatgtgt gttagagacc attatatcat 10140 ggactcatgt aagtgattaa ctgaaccatg taatcgtggt tgatgacatg gttcaaatgt 10200 tgtaaaccgt tagatcacag ccaatcaacg aatattaggc attccaagca ttctagaaaa 10260 tctcttgata tacgagaatg catgtgtcag ggactcggtt tgtgccatcc aatgggccag 10320 ttctcaccga gcagtgtccc aaaccagccc aaaagagaga actataagag caacagcagc 10380 tggtcctcta aggacgaaca gaccagaagc tctcggggaa ttttaactat ttgctacttt 10440 taggtttgtc aattatctaa atatccctct taggttcgta tttaataatt tgccattgga 10500 gagaggtgat ttcttaacta tttgccactt ttgcctacgt ggcgagccat cgtggcatgt 10560 ccgcgtggaa aacgacgtgg accccacccg tcagcccctc ccatctcctt cttctccacc 10620 tccggccatc atttctccac ccatcagtcg aaatccgcac catggggagg ttgggtgggc 10680 attggtgcca gcgcacgagc ttgacgcggt agagggaggc ctgccagtgc ggcgtgagat 10740 tggcgagtgt ggtggggtcg cagcagtaga cggcgagcga ggtcaccgcc ggcaagcaac 10800 ccacgagacg ggcggcgatg gaggcgttct gctcggagat cgcctcgggg tggtacaggt 10860 tcatcctcga cgacgtcgat gtcaacgacg gcgcgccgcc gccgccaggc cggacgaagg 10920 agaggagcgg gtgcccccac agcgagacaa gtgagaggtc gaggcggtcc agcat 10975 // ID TNR2 repbase; DNA; ORY; 157 BP. XX AC D14535; XX DT 10-JUL-2002 (Rel. 1, Created) DT 10-JUL-2002 (Rel. 1, Last updated, Version 1) XX DE Tnr2 short interspersed element. XX KW transposable element; SINE; short interspersed element; TNR2. XX OS Oryza rufipogon OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-157 RA Mochizuki K., Ohtsubo H., Hirano H., Sano Y. and Ohtsubo E.; RT "Classification and relationships of rice strains with AA genome RT by identification of transposable elements at nine loci."; RL Jpn. J. Genet 68(3), 205-217 (1993). XX DR GenBank; D14535; Positions 223 379. XX CC ~10 bp target site duplication. XX SQ Sequence 157 BP; 44 A; 29 C; 30 G; 54 T; 0 other; cgggacattt aattattttg ccaattttaa gatgtgccaa ttaactattt gctactcact 60 gtctatgaca tgtatgccct catgtgtcta tgacatgtgg gtacagtggc aaatccttta 120 gaaccactcg taagagtggg aaatagttaa ttattcc 157 // ID RBTVL_LTR repbase; DNA; ORY; 979 BP. XX AC AE017121; XX DT 04-AUG-2005 (Rel. 10.07, Created) DT 05-AUG-2005 (Rel. 10.07, Last updated, Version 1) XX DE Rice tungro bacilliform virus like LTR-retrotransposon (long DE terminal repeat). XX KW LTR Retrotransposon; Transposable Element; RBTVL_LTR. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-979 RA Kunii M., Kanda M., Nagano H., Uyeda I., Kishima Y. and Sano Y.; RT "Reconstruction of putative DNA virus from endogenous rice tungro RT bacilliform virus-like sequences in the rice genome: implications RT for integration and evolution."; RL BMC Genomics 5(1), 80-80 (2004). XX RN [2] RP 1-979 RA Jurka J.; RT "A recent copy of LTR-retrotransposon related to Rice tungro RT bacilliform virus."; RL Direct Submission to Repbase Update (04-AUG-2005). XX DR Genbank; AE017121; Positions 203379 204357. XX CC LTRs are 99% identical. Present in multiple copies in the rice CC genome. XX SQ Sequence 979 BP; 312 A; 190 C; 226 G; 251 T; 0 other; tgggcgtgga agaagaaaaa aaacgaagat ttcagaagac tactcaagga ggaatccaga 60 agaaggaatc cagaaggaca ccctataagc ataaaggaac aatatagggt gcggtgaatg 120 acatatcact gtgaagagta aaactttcgg tgaaaaggcc tcgactttag ccagctcccg 180 tgaagataca gtagcgaaga gataagcagg aggcacaggc gacgccatcc ctggcctcta 240 taaaaggaga cgttggcctt cactccggag acacacaaca acaacgaaga caccattcag 300 agcaaagctt ccaagcgcgc tctcaccctc cattccaccg ttcttagtag tagtgacttt 360 agcctacctt gcatagtata ttgaagcaag gagttgtgta ataacgctgt gtaaggtaag 420 aacagcttgc ttgtacctac cttcgggttt cccgaaaggg aaaaccgtat gtaagcttat 480 ctgtttaata tgaagtaatt ttccttaagt attcctgcac gtttgttcta gacaagtgtt 540 tatgctaagg accctatagg agaaacctct tcggtttgtt ctcgttttta gcctgcatct 600 tgcataggcg tctggagaat cggtatccgt agagaagtgt tccctttggg tggaactgcc 660 tggggagacg ataaactctt agctagaaca agtgtgactt ggaatatctt gttaagttgc 720 ttctaaaaag atagataggt gaggcatacg gtgagtaccg agtaggactt tacatcatcc 780 gaagcaagct tctaaggctg tctaaatagg attcgccacc ctgcaaagat cctaaagtta 840 aaatatctct cgaagtgaac agtaatttaa acagtaaact gaatagtgtt tttgaatagt 900 aatcagccga ataaacagta aactgaatag tattcagccg aataaatagt gttttgaaca 960 gtgtatattg tctgaagca 979 // ID TNR10 repbase; DNA; ORY; 608 BP. XX AC . XX DT 17-MAY-2005 (Rel. 10.05, Created) DT 17-MAY-2005 (Rel. 10.05, Last updated, Version 1) XX DE Rice putative non-autonomous DNA transposon TNR10 - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; putative DNA transposon; TNR10. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-608 RA Gentles A. and Jurka J.; RT "Putative rice non-autonomous DNA transposon TNR10."; RL Direct Submission to Repbase Update (17-MAY-2005). XX DR [1] (Consensus) XX CC 5 bp target site duplications. The sequence has ~200 bp terminal CC inverted repeat, and an additional CC ~60 bp internal palindromic sequence. XX SQ Sequence 608 BP; 113 A; 126 C; 225 G; 144 T; 0 other; tgttgggttt agtcccacat cggtaattga tgatggggga gcacgactta aaaggtgggg 60 gcggtcctca cccatcagac tagtcttttg ggttgtgtag gcccaggacc taaagttgtg 120 gctccggttg ggcctgtggt ggagcaggcc caatgtgacc tgggtggccc acggttggtg 180 ggccgggctg cgcactctaa caagtggtat cagagcccaa ggtttggaac ccggaacaat 240 ttccatgggt cacatggtgg ggaggccagg taacaagtct tcggggtcac atgggttgat 300 gtgacggggg agattgttgg gcctgaggcc aggtaacaag tcttcggggt cacatgggtt 360 gatgtgacgg gggagattgt tgggcccgat gtgtgacggg ggagattgtt gggtttagtc 420 ccacatcggt aattgatgat gggggagcac gacttaaaag gtgggggcgg tcctcaccca 480 tcagactagt cttttgggtt gtgtaggccc aggacctaaa gttgtggctc cggttgggcc 540 tgtggtggag caggcccaat gtgacctggg tggcccacgg ttggtgggcc gggctgcgca 600 ctctaaca 608 // ID SC-6 repbase; DNA; ORY; 6312 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 04-AUG-2002 (Rel. 7.07, Last updated, Version 1) XX DE Rice copia-type retrotransposon SC-6. XX KW Copia; LTR Retrotransposon; Transposable Element; KW COPIA superfamily; SC-1; SC-6. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-6312 RA Jiang N. and Wessler R.S.; RT "SC-6: a copia-type retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 38-38 (2002). XX DR [1] (Consensus) XX CC SC-6 is a Copia-type retrotransposon. It has 417bp LTRs. CC Related to SC-1. XX SQ Sequence 6312 BP; 1976 A; 1125 C; 1232 G; 1979 T; 0 other; tgttggttga ttttatcggc taatgccggt tagttaggat aaggttaaaa tcccaccggt 60 tttcctatcc taacaagaaa caagaaacaa actaagagat aaatctgttt tgtgtgatcg 120 gtacaaaata gattcgaatt ttagattgag ataaaccccc gagccccacc agtgtcgcta 180 tataaagaaa gaggagggag gctgggtgac gacttaactc tctccaaccc taaaccctaa 240 atcaatcgcc cgatcgatta gacactggaa ggggttcgtg aggtatctca caaaagaaga 300 agaaagaaga gaagcaatgg cttcatctca ggtcagtgat aaattaattt ccgcataagc 360 agaaggtgat catgtttagg ctaagactca attaattagt tggattaaat tccaacattg 420 tggtatcaga gcctaatctt agctacttga tccacttgat cccatcatcc ctgattgaag 480 ccactgtgcc aatgaagtga tgaaccctaa tctgttaagc ccggcatgat gccatgatta 540 atctgttaag ccccttattc tgtttattag ttcttaaagt tgctttgtgt tgagcattat 600 gtcatattta agttaattag atcgaattag ggttcatgct taagtaaatc atagcttcgg 660 ctagaaatca gtaagggaag gagaaattca atcagagaga gttttttttt ctctcaaatt 720 ttactaagcg gagaacgagt gagataaacc agattgaaac tctcattgtt cccaactcat 780 aaaccctagg ttcttatcat ataagaacag tggattaaga agtaaattgg ggaaaacagg 840 gtataaacta gattgaaatt ccccactgtt aagcaaaagg gaataaacaa gattgaaatt 900 tcccagaatc cccaataagc cggatccaat cggcctaaaa tccccaaatg aggaacccta 960 atttttgggg gaagaaccct aagtcacaaa tacccgaatt aaatccaaat tcaagtcaaa 1020 attaggtttt gagttcgggt taattaccgg atttagaccc cctaagcttg ccggagctct 1080 ccggcctcct cagggccgcg ccggttgacc gccgtgcgcg cgccgccttg gagctcgtct 1140 ctccaccgtc cctcaccggg gatgggaagc gtcggcttgg cggctgcctt cgtgctccgc 1200 cccccccccc ccggcgccga cgaggtccgg ccgcatagac gcttcccgtc gctagcgcgc 1260 cgcctcgccg gaccgccgac gctgtagcac gcggcttggc gtcgccctcg ggcgcgcccc 1320 ccagccagct gaggtggagc cgctgcggcg ctcgccgccg cacgcgcgtg ccgtctcgcc 1380 ggaccgcagt cgcaacatcg ccgccgattc gctcactcgc tcgccggacg ccgaatcggg 1440 aagagaaggg gacaagaatg agctagggtt agggttacac ccattccccc ctggcacgcg 1500 atttcttcgg cgcgggcgaa atcttggccg tccgtttgat ccgacggccg tcctcgctcc 1560 cgcgtcgggc cgtcgccgtt aatgggccga gccgatctgg gctgcggcca cctcagcgcc 1620 gcgcaacaat aagtggaccg gtccgttttg ggacggcctc accaataaga gtgggctctt 1680 attaatttta atcttaagcc cgtgaattta atgttttatt tatttccata aattcattta 1740 tgagctttct tagccattta aaattgctag aaaattatga tcaattattt ggtcactcag 1800 aaagaaatta atgatatgat attatatttg accaacatta atatgatttc atgtcaatat 1860 ttattaagat tattatttcc ttaagccaat taatttattt ctagttgaat ggaaatttaa 1920 ctagaaagta tttatgattt catgtcaaca tcattatgat agtcatttcc ttaataactt 1980 aattatttat agtcgaatgg aaccaacgag aaattcgact agaaagcatt aagatctgaa 2040 gatatattta acccacgtta ttataattgc atgtcaatta taattttttt ccttagttat 2100 tttctaccaa atggtgatat aattaaggaa ttaattttaa gattactcat aattatttat 2160 gaccaatggt gttttgacta tgaaattcta agtttatttt gcatatgatt gattaagcca 2220 tagtaaacta attatatgca attatcaatg cttattattt aagattagtt ggaataccga 2280 gtaaattatt tctagataaa tggaaccaac gggaagttta tctagaaaga aagatgattt 2340 cattaagatt gttatttcct taattatttc tgcccaacgg tgatgtaatt aagggaagaa 2400 atctaagtat tgtcaatcat tattttaatt ttctctgtca ttttagcctt aatggtgata 2460 tgacttagaa ttttatttat gccattagtg cattaattcc ttttatcact tctaccttgc 2520 ggtgatgtga tcgaggatct aatctattag taagcttaat tcctttacca tttctgccca 2580 acggttatat ggctaaggat tttaatttta attctatggc atcactaatg gcgtcatttc 2640 ctaatcattt ctaccgtatg gtgatttgat ttgggatttt aaattattta ctttatcact 2700 tctacctttt ggtgatgtga cttaagacat taatgtttat tccctaatca tttctgccca 2760 acggtgactt gattttggat tataagtaat ttcatttatt gattccttcg ttttgtctct 2820 gcccaatggt gatacaaagc gaaataaaga ttaagttatt gttgtgtaag ttagtgtact 2880 attgtacgta atttgcacaa gcaaccacaa ataatagtgc cacttaattt tatttatcag 2940 ttaaagtcta tggaattatt attattattc ctcattgact taactgagcc taaggcctat 3000 ttgagtatga cttagcatta acaaaggatt ccttgtgact cccgcagcta atgtcactaa 3060 tttttcctaa actcaagagg catctttagc ctgggagaag gccaatataa tgctatgttt 3120 cgcatgtcac tcataaatat tgagattatc atccctgtta gtgttaaggg gagaattttg 3180 agcatgacat tgcgtctagc aaatgttgag atgaaattta gaagtttgtc aagactaatg 3240 cttagtacaa atttagtgcc tatgcacatt tgccgccata atttaaaggt agcacaagaa 3300 ataaatcaca tggcgtgcaa acttagtggg atggacattg cacatttcaa atgcgccact 3360 tgtccatttc atatgattct tctcccatta gactacggtc attttcagag ttgtaatact 3420 aagacaaagt ggaccataat tgacttggtt catcattctg caaatcaata agaaatatag 3480 aagactaaga ggcaaactaa gtaagatcct gttaatcttg catttgatgg caaagatgga 3540 gcttcactaa ggggaagtgt tgcaacttcc aaatttaatg ataataaagc tcatattcct 3600 cgcaagggga attcaaattg cctcgatgtc ctatgtatgc tactcttgaa atattcttgt 3660 gtaagctctt tgcaagaaat agggacatgc ttaatgtcct gatttaatgg cattattttg 3720 ggttgaatta ttatgagacg ttgtcgaaat tatggcctta ttattcggcc acatttctag 3780 gggagaatgg acgtctcatt gagatcgaga cacttcaccc ttagaaattt ctgacatcta 3840 ttattactta aatgctaatt cactaagtaa aattaagtga ttcaagttta tgaaaaataa 3900 gatagtatgc ttccattaaa taaataatac aatcagtggg agctcatcaa gagctctaat 3960 aagagaagat tattctacct cattaatgac tcatagctcc attatgtgga cgctagaatt 4020 ttgcatctct taatttgtga cttgcacaat taaatataca taacatgact tgggggtttt 4080 gttatggaaa gacaagtcac atatagggtg cagacttaag aaatccattt gtggacttaa 4140 tcaaacattg atgatgtttt aatttccgct gtgtcattag tgaactaagc ttaaataaca 4200 atgaggagaa tatttattct ataatgatgg aagtaagaca tcattgaaat tgtgtcattg 4260 tcgcttatgt cacataccta ggggagtttg gaacgtctca tgagatagag atattctttc 4320 tcttagattt taatggcgtt gtttagcttt aagtgaaaat tttatgaagt taagatatta 4380 gccaacaaat gatttttatg gctatgttta cctataagcg acctccgatt tcctttaaga 4440 aatttaagac actaatgcta aaatcaaatg aagttatgag atcggattat ggtggtaaac 4500 actaaataaa gcttgttcac cttataagac attaaaaata agcgttcatc caaatggttt 4560 tcgaaccatg taagagtaaa ttgagatgga tgaacaaaat aagacattaa agtgttcatc 4620 taaatggttt tcgaaccata taagaataat tgagattgat gaacaaaata aagaatggtt 4680 ttcgaaccat ataagaataa ttgagattga tgaacaaaat aaagaattta gtagaagttt 4740 ctgaatgagt caaaatattg ggccatttaa gtgggttaat aaaattaagc ctgactctga 4800 tggaaatttc gaacaatcca agtgaggtgg acagctgcat gaaaattaaa ggtgggaatt 4860 tcattcactg gtactctata ctaatgaaat tttattgtca agcaatgcat attgctgtta 4920 gaaactgaga aaatttttcc atgaattatt ttggtctgaa ggagtactgg gcttatatca 4980 gttagtcata cattgacaag aagaaataat ttgagagaat tcaattaaag ttaatcaagc 5040 tgaaattaag ttataaagat aatcatttat gattcagctg acagaagctt gagattggct 5100 caaatctgga tgcatataga tttggcatat atttttactg ggaatcttgg cagtatttaa 5160 ttaaatccag actagaccac tggtattaag aatgttttgc attattgcaa gacaatctga 5220 agtaacatgc tcatatttct aaagtccaat gatctcagaa gtttagagac atttggacac 5280 ttattttgtg agatgtttgg atatttataa agattattca gattaagcta tatccacaca 5340 taggggagta ataaccatgg aaaagctcca aaataatctc ttactgcata gtcgacgatg 5400 cagttagatt ttaaagcatg ttatgattaa tcatatttcc cagaactaag agtggtaaat 5460 agcgctcata aaccactcaa aaggtgtaaa ccactcaatt atactgtgtg caacacaggt 5520 ttctattcta gtagcaacat gttatgtgtt ttctgcctaa cacattgaca tagttgtgaa 5580 agatatgtcc caggatcgaa ttattattaa gctaagcttt tgctcatgga tccatactct 5640 aaaggctcat aaagttaaga ttaattaaga tatgttctgg ccagtacgtg cataaataag 5700 agcctcacta agatcctgga tgagggggac ttaatttttc aatcaacacc cactaagtta 5760 agcttgagtt tatttgggta ctatagttca ctataggtct tgttgtctcg gtgacgcata 5820 atgttgttga agacacattg ccttggggag gtattttatt tgataaactc gtcagttagt 5880 ctcaaaatca aggggagaat gttggttgat tttattggct aatgccggtt agttaggata 5940 aggttaaaat cccaccggtt ttcctatcct aacaagaaac aaactaaaag ataaatctgt 6000 tttgtgtgat cggtacaaaa tatattcaaa ttttagattg agataaaccc ccgagcccca 6060 ccagtgtcgc tatataaaga aagagaagga gggaggctgg gtgacgactt aactctctcc 6120 aaccctaaac cctaaatcaa tcgcccgatc gattagacac tggaaggggt tcgtgaggta 6180 tctcacaaaa gaagaagaaa gaagagaagc aatggcttca tctcaggtca gtgataaatt 6240 aatttccgta taagcagaag gtgatcatgt ttaggctaag actcaattaa ttagttggat 6300 taaattccaa ca 6312 // ID SZ-30 repbase; DNA; ORY; 6340 BP. XX AC . XX DT 16-AUG-2004 (Rel. 9.07, Created) DT 16-AUG-2004 (Rel. 9.07, Last updated, Version 2) XX DE Rice retrotransposon SZ-30. XX KW LTR Retrotransposon; Transposable Element; SZ-5; SZ-30. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-6340 RA Jiang N. and Wessler R.S.; RT "SZ-30: a retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 87-87 (2002). XX DR [1] (Consensus) XX CC SZ-30 has 1198bp LTRs. LTRs are similar to SZ-5. XX SQ Sequence 6340 BP; 1721 A; 904 C; 1568 G; 2147 T; 0 other; tgtgaaatca ttgtcatgat taatatttgt gatgaacaat tggctatgca aatgatttaa 60 ttaaagaatt ggtttgagag tttgtgtgaa tattggtgtg agtgcgtgtg actaatgtgg 120 gttaggttgt gatatctgtg cccagaaacg gttgttttgt ctgattgtgt gcaggtgact 180 tgaggtcagc cttggtcaat ggtgaggacc gggactatgt tcagggagga acagaggtct 240 agtgcggtcg ggataccatg tgagaaggtg actagagtcc agattcttgg aggtcaactt 300 cggccaacgg tggggatcgg gactaaactc atggaggagt tgaggttcag acagtcaagg 360 ataccaggtg acgaagttgg agagatcttc gcaacgggct tcacgagctg tgcgtgcaag 420 tgccggtgtt cgcgaaggag attggaagaa attagagaga agtatatggt gctacagtgc 480 ttcgagttat tgtagcaggt cgtgtatgca tatatgtgtg tatgctggtc gtagcatatg 540 catgtatgta tggtgattga tgcatgcatg ttgtgccatg catgtgtgat ggctcggtgg 600 gcttcggtgg cagctggctg gaggccgagc cggtccagga gcagcggcac gtcagcccac 660 gtgcgatagg cccaagcagg agcaatcgca ggagatcgag tccgatgcgg ttggctgcgg 720 ctgtgggagt tttggtaaat tgtaaaaggt ttagaaattg agggattgag tcctattgtg 780 aataggagtt ttacacctac tttgagtagg gggttttttg gtataaatag agagggagcg 840 tgagccttcc cggtatcgct ttgagagcaa ttgagttgat agtttaattc aggtttcgag 900 tttagtcgag atttttgtaa ggagtgctgt tgttgcactt tgtaaacaca gagagaagaa 960 ataaagtttt catctacttt gagagttctt cgatttgtgt ttcttcaggt tcaggcggca 1020 gggaggcggt tcgactggcg gcgtacgagc ggtccgaccg ggggcgataa aactacgtcg 1080 agatttccat cgatttgagg gtaactttta tttccgttaa aagtttttgg gtttttggtt 1140 ttgcctacca ttcacccctt tctggtaggc ttggttgctt gtgttcgatc ctataagtgg 1200 tatcatagcc tcgttttctt ctttggattt ttatcgatct aaagtttttg ccatggctgc 1260 tcctgttagg ttttcaacta aacctcatgt tttcgatgga acggattttt ctcattggtg 1320 tagtaggatg caatcttaca ttatggctga agattatgat atttagagaa aagtttctca 1380 tgcttatgtg attcctgaag ctattaatac tgctgctgaa aaaactgctt ttgaacaaaa 1440 ttgcaaagct cgcaatattc ttttgagtgg gatttctcgt tcggattatg atcgtgttgc 1500 tcatcttcaa actgctcatg agatttggat ttttttgagt aattttcatc aaggaacaaa 1560 taatataaaa gaacttcgtc gtgatctttt caaaacggag tacattaaat ttgagatgaa 1620 acctggagaa gctttggatg actatatttc tcggtttaat aaaattttga gtgatcttag 1680 atctgttgat tcttcttatg atgctaatta tccacaatct aagatttttc gccacttttt 1740 gaatggtctt gacatgtcta tttgggagat gaaagttaca tctattcagg agtctgtgaa 1800 tatgtctact ttgactttgg attcgcttta cacaaaactg aaaactcatg agatgaatat 1860 tcgttctcgt aaaggtgatt ctaagtctag tgttttggtt tcgtcttcaa cttttttgga 1920 tgttggtgct tcttcatcga agtcttctgt tcttgcttta tttaatgcca tatccgatga 1980 tcaactcgaa cagttcgagg atgatttggt tttgctatct aacagatttt ctcgagctat 2040 gaaaaatgtt aggaacagga aaagaggaga accgaatcgt tgttttgagt gtggagcact 2100 taatcatctt cgttcgcatt gtcctaagct tgggagagga aagaatgaag atgatggaag 2160 agtcaaagag gatgacgtga acaagaagaa gaacatgaag gagaaggaga agaagaagca 2220 ttgtatgcag tggttagttc aagaactcat aaaagttctt gatggatctg aagatgaaga 2280 tgagggcaaa ggtaagcaag ttgttgatct agattttatt gctcgtaatg ctagttctgc 2340 tgttgatgaa tctgacgatg ataatgaaga aaagcttagt tatgatcaat tagaacttgc 2400 tgcttacaaa tttgctaaga aacttcaaac atgttctatt gtgcttgatg agaaggatca 2460 cactattgag attctaaatg ctgaaattga tagattaaaa tcttcgattc ctgatgatga 2520 taattgtcaa tcttgtgaag ttttattttc tgaaattaat gctttgcgag atgtcaattc 2580 tgttaattgc aaaaaattgg aatttgagat tgaaaaatct aaaaagttgg aatcttcttt 2640 tgctcttgga tttgctttac atgctcgtgt tgttgatgag ttgattttga caaagaatgt 2700 tttgaaaaaa atacaaagtt gttttttatg caagttcttt ggtcaatgct tcatgtgcaa 2760 ataaggcaaa acaaaacaat ggtgttttga tttctcaaga ttgttcaaag tgtgttttga 2820 atgagatgaa gttgaaagat gctatagggc gtgttaaaca catggaagaa gttgttaaac 2880 aagatgaggt gttttcttgc tcaacttgta gaaagcaaaa aggttttttg gatgcttgca 2940 aaaattgtgc tattcttact caagaggttt cttatttgaa aagttctttg caaagatttt 3000 ctgatggtaa aaagaacctc aacatgattc ttgatcaatc taaagttagc acacacaatc 3060 gtggtttagg ttttgattct tatgcttatc atgctagaca tcctcctact gttttgggtg 3120 ctgctaggag aggtgaaatt ttgattgaaa ctgagcctaa gaacactgtg tttaaatctg 3180 ctggcatcat gtcttctttg aatgcatctt cttcaaaatc aaatgttgtg aatgcaaaat 3240 cttctgttgt tgcaaaacca tcaatttcaa aaccatctac ttaccaaact tgtcgtgaga 3300 agtacacttg ttctttttgt ggaaaagatg gatatttggt tggtttttgt tttagacttg 3360 cccataaaca gaaaaaggaa agagaaattg cttttgcaaa acgacgttgg caaaaatcgg 3420 gttttagttc gaggagcacg gtgagaccgc agttgaaccg gcggtcagac cggcagctag 3480 gcccggttag accgcaggga cagcggcggt cagaccggcc tcggggtgat tttgtgcgta 3540 attcaaatca gtcttttgtg aaacgaaaag gtaagttttc aggtatgtct ggttctgatt 3600 ttgttagtgc atatgtacct actggttcta ctggtcgtgt gactcagtgt tggattccaa 3660 aatttcttat ttctaacccc aacacggagg ccttgacatc ttctcatttg taggtatttt 3720 ggtggcatac tccccatgag cgttcaatgt tgtgacggcg attgctttac aaggtaacat 3780 caaggtaatt tttggattga tataattttg ttctactctc ttgattatta gcttttcata 3840 tgctagtgtt tgagatagta gttttgttta atacatgtgg atatatgtcg attcatgaga 3900 accttggtga tatcattggc aattggatgt ctttttcaaa atcattgatt tcttcttgat 3960 ttttgttcgg ggagaattgg aggttaattt gagggggagt ttatgctttt tcatgcattc 4020 atgtttattt ttatgcattt gctctaattt tgaaaataaa taaaaatgag aaaaagaaga 4080 gctttgtttt atacctctag tatattcttg tgcatgctag caaaataatt gaggtctatt 4140 tgttgctatg ttagcttgta tgcattttag tctttatatg aggattagat attgctttta 4200 agtgagatga tgcatgacac taattctttt acttgaatta agaaaatatg caatattgat 4260 gctagcatat ggtttgattt ataaatgctt atgtatatgc tttattgaat tgttattcct 4320 caaatagctt ttatttgctc attgtgcaag agaataaaaa atatctatga gagaaaaaaa 4380 atgaataccg aatccttgga aacagtcttg acgacaagga cgtacccgaa ataattgaga 4440 gaaaaaaagt gagcaaaaag gctcaaatga aagttaaaaa attctcttga ttgttttgtg 4500 ctaaagctaa tttgagaaag agtgataaat gcaataggta tatatgtata ttgtttgttt 4560 ttcaacctat gtgcttgtga atatattgca ttataaatca tttgaaatca tgaatcctta 4620 ttgttgattt gagcttaatt gtaatatctt tgattcatgt ttatactata gtgcatgctt 4680 gttaactagc tgatgaattt atctccctta tattgcaaca catgatcatg aattgctttt 4740 ggtacatttc aaagctctcg gaaaaaattg agaaaatata aaaactaaaa atggttattc 4800 caagtggcaa tcatgacata atttcatttg tgttttattg ttattatttc tcttttgaat 4860 tcttgatgaa atcattgtca gagggggaga aatatacaaa atgcatgctt cttgaaaggg 4920 ggagaattga attgtttcga ttttaaaaat agtcaatttt gtactttgat tgcaaattga 4980 tgagagaaat tctttctttt aaaaagggga gagtttttct tttcactttt gtgatttttg 5040 tttttatttt tcataaacaa aaaattgcat tttgttgatg ttgccaatgt gttcatcaag 5100 ggggagattg tgaaatcatt gtcatgatta atatttgtga tgaacaattg gctatgcaaa 5160 tgatttaatt aaagaattgg tttgagagtt tgtgtgaatg ttggtgtgag tgcgtgtgac 5220 taatgtgggt taggttgtga tatctgtgcc cagaaacggt tgttttgtct gattgtgtgc 5280 aggtgacttg aggtcagcct tggtcaatgg tgaggactgg gactatgttc agggaggaac 5340 agaggtctag tgcggtcggg ataccatgtg agaaggtgac tagagtccag attcttggag 5400 gtcaacttcg gtcaacggtg gggatcggga ctaaactcat ggaggagttg aggttcagac 5460 ggttaaggat accgagtaac gaaattggat acgagatgac acatggtgaa tggacaccgt 5520 gtgggagaga tcttcgcaac gggcttcacg aggtgtgcgt gcaagtgccg gtgttcgcga 5580 aggagattgg aagaaattag agagaagtat atggtgctac agtgcttcga gttattgtag 5640 caggtcgtgt atgcatatat gtgtgtatgc tggtcgtagc atatgcatgt atgtatggtg 5700 attgatgcat gcatgttgtg ccatgcatgt gtgatggctc ggtgggcttc ggtggcagct 5760 ggctggaggc cgagccggtc caggagcagc ggcacgtcag cccacgtgcg ataggcccaa 5820 gcaggagcaa gcgcaggaga tcgagtccga tgcggttggc tgcggctgtg ggagttttgg 5880 taaattgtaa aaggtttaga aattgaggga ttgagtccta ttgtgaatag gagttttaca 5940 cctactttga gtagggggtt ttttggtata aatagagagg gagcgtgagc cttcccggta 6000 tcgctttgag agcaattgag ttgatagttt aattcgggtt tcgagtttag tcgagatttt 6060 tgtaaggagt gctgttgttg cactttgtaa acacagagag aagaaataaa gttttcatct 6120 actttgagag ttcttcgatt tgtgtttctt cgggttcaga cggcagggag gcggttcgac 6180 tggcggcgta cgagcggtcc gaccggcggc cataaaacta cgtcaagatt tccatcgatt 6240 tgagggtaac ttttatttcc gttaaaagtt tttgggtttt tgtttttctc taccattcac 6300 ccccttctgg taggcttggt tgcttgtgtt cgatcctaca 6340 // ID SZ-37 repbase; DNA; ORY; 11996 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE Rice retrotransposon SZ-37, incomplete sequence. XX KW LTR retrotransposon; SZ-37. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-11996 RA Jiang N. and Wessler R.S.; RT "SZ-37: a retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 93-93 (2002). XX DR [1] (Consensus) XX CC Incomplete sequence. XX SQ Sequence 11996 BP; 3465 A; 2884 C; 2558 G; 3089 T; 0 other; tgtaggatcg agatgtcgac tagagggggg tgaataggcg atttaaaact aaatgacacc 60 taatcaaaac taacctaagt tgctaggctt ggtgagggtc aactctaact aagcaactaa 120 gttatgtttt gcaaacctag ggtgatagtg gctcaattat atctctagga aagtaaatca 180 cactcctatg tcaatgttta gcaatcctag ggtgatatga tctcaagttt gtctctagaa 240 atgtaaattg cacaaatgta aatgcgacaa tcaaatgaga caaggaaaca agagattttt 300 caccgaggtt cggaaactcg ccggtttcct actccccgtt gaggcgagcc caactccacc 360 gctcaaccac gaagccaccg cacgccccct tcgtcaaggg gtgggcaagg cgagagccgg 420 cccacagaga ggactaccca agcctcgatc actagggtag ttcttccttc actccgaaga 480 tagtgaactc caaaccactc acaaaccggc accgggcctc ctccacaatc ttctcggaga 540 ggtcaccggg caacttctcc acaagccgac taggaggcgg caacctccaa gagtaacaag 600 taatgacccg gcgtggagat gatcaagtgc cacactagct ctacaatgga agcaaatgca 660 cttgactctt gtctaatcaa ccctctaaca cactagatgg atgaacacaa agctcaagtg 720 agtgtgagag aggtgcaagg ggtgtatgca attaaattga gtgccaagag agtccccttg 780 ctgctggtgg gggagtattt atactcccac ccaccaaaac tagccgttgg gggcgaaatc 840 ccccaacttt gtgctctgcc ggtctgaccg gaggtatgtg gccggtcaga ccgtgctact 900 ctgcaacggc tagaaaacta gccgttgaag tgttgttaga gggccccatc ggcctggccg 960 gtcagaccgg cgttgagtgg gcggtcagac cggcctcggc tcggttagac cgccatcggc 1020 tcggtctgac tgactacggc tccgtcggct ctgtatcggc catcccgagc agcaccatct 1080 cggcctccag ggggccggtc tgaccgggca tgtgccgccg gtcagaccgg ccttatgcgc 1140 cggtcagacc ggccagggca cgccggtcag accgccgcta tgtggacggt ctgaccatcc 1200 ctggtcaggc caaacccagt gaaagtgcaa agtgattttc gtgtgtgtga tgaaaatgtg 1260 agcacaagtg aaaatgcaat gacctaatgt ggcaattaaa atcatctctt tgctaggtca 1320 ttacccctct taatagtacg gcgaaactaa aaataaacta gcaaatttga tcgccctaca 1380 cctcgattaa ttctaaatta aagcgctagt tttaccgtct tctttccctt tgctttgcgc 1440 cgtcaatttt aatccatcga taatcatcca tgtgcacata tgatgtggac ctaacttaaa 1500 atgtatagtt caaagacaac ggttagtcca caattagcgc ttgtgattaa ttaccaaaat 1560 taacaccagg ggcctagatg cttcaatctc cccctttttg gtaattgatg acaaacacca 1620 caaatatata taatcaaaca tagagcagat ggacatatat tgcattgaca agcaaaagct 1680 ccccctaaac atatgcataa caattacaaa tagcaaatat ggagccaatg cacatttcaa 1740 tttcacattt caacatagca caacacatat gcaaattata atgtgaactt cacatatgaa 1800 tcaaccgaat gcataagatg gtcacaagta tatcaatgta actccaacca tgcatcatag 1860 cacaagttca cattaagacc acatcaaggg ctcacaaata aaacataggc tattacaaga 1920 ccacaaaggg tccaaatgac atagagagtt taacaaaatg acaaataaca cacaagatag 1980 agtaatagcc catacccaca caaaatatag cccaaacctc cttaacctat taaatatgag 2040 gtgactaacc tcactactac tagtcccaac ccaacataaa acacactttt ctcccccttt 2100 tggcatcaag caccaaaaag gtcttcactc ttgtggagga gaaggaggac acgccgaagt 2160 ggaaggatga gaagcatcac gacgacgacg atgagaagct tgggagctct ccaacatttg 2220 gactcgagaa tccaatatac ccactcgagt gtgcaatctc cccacggaag cattcaagtc 2280 tccaacatct gtgcgcaagc cacgaacatc ctcatgcaaa gcttcatgcc cggtaaacaa 2340 gcgttgaatg ctttcactta gggtattaat agccccaagt accgggttga agtactcgtt 2400 gggttgcatt ccaaaatagg catactgagg gtgaaagaag gcatttggat catacccatg 2460 aggaggagga ggtgctgagc ttgagctagc tccaggatga gaggagggcg ccaccctagg 2520 agcacaggga gctccaagct gaaggcgggg cttgtactgc ttgtgcttct tcaaattctg 2580 cctagcagcc ccaagcttgt cttgaatcaa cctcatgatg taaggggcat aatagattcc 2640 ctgagtgaag gtccccttgg agatggcaat ctcttgcagc atgagagtca caatgtcgaa 2700 ctgtcggccc tgaatgattg catcgatgac gtgccaagcc acccccctaa tgtcatcatt 2760 gttacccagg cgagggagga tggtagctct cacaatcttg ttaaccacac tcgggatggt 2820 cctcaagccg gcaaccttcc catatgtgta ccgcgctcca tcttcataaa actgagagag 2880 gtagtctatg gagagcggat tatgggtgtg ctcctcatgc aagtcatctc caaagtccaa 2940 gcgaatattg aggagccgcc ggaattgcct cctagagata gaacactaga gggtgtcgga 3000 catccacttc atctcactat agtccccagc cacccacact gtagcataaa actgccggat 3060 caaatcttca ttgtaatctt gcttaagagt cataatccgg tcaatgccaa cagtcctgaa 3120 gagatcctgc aagccctcaa actctagagt ctcattgatg tctctccaag agatccactt 3180 atgctctgca aaagctttcc ctgcatagac ttgctcatac acactcttct ggaaagcggt 3240 gtgaaaacgg ggatccgggg tgtcccgagg cctcaaaaac tgatcatggt gcctcaagat 3300 ggtatactgt gatggattcc tcatgttcac aacaaactgg atggatggat caatgtgcat 3360 atcatcactt tcttcatcct catactctcc acttccactg tcatcatctc cactttcctc 3420 ctcactagcc ccctcaacat tggcctcaac ctcttcatct ctttgagcgt aatcctctcc 3480 actcgattcc tcaggctcac tcacaggatc cggagttggc gcacgacgac catgacgagt 3540 gcggggaggc atcactgaaa aacaggagca aaggatatat aagtaataat tttagaaacc 3600 acatagtgaa gtgggaggaa gggggagtac ggcctgtcag gggaggtcag accgagagcc 3660 acggccggtc agaccgcatg cctgaagtcg gtcaaaccaa cggccgacgg ccggtcagac 3720 cgacggctca aggccggtca gactgccact gacagtagca ccaccgaatc cttccataat 3780 ccacacaaat gattctaaaa attgctagga cagtgttgca caagattgaa acatgaacat 3840 caaggtgtag gtctatttca tcaagattaa agtaatgggg gaaactaccc ttaaccctag 3900 agattgaaat agatcgattt gagagcaatg cacaagaggg agagagattt actggttgaa 3960 ggagttgaat cacaccaaga aactaccctc tattggtgca aatcgaagaa cacctcttcc 4020 ttcacctagg gttccatgcc atggatcaca aactcaataa aatctcaaat caatccatgg 4080 aatagagaga ggaagaggag gagattcact tacggtgtaa ccggagtgat tttgacggtt 4140 gaactggatg gatttggtgg agggaggtgg ctagggtttg ggagaggaga gaggagaaga 4200 aatttcgagt tggagaagtg aagagatgag atgggatgag gaggggtcgc gtaggaggag 4260 gaggaggaag aaaggacaaa gtcctgggcc caccatccca ggccggtcag accggctata 4320 tgcggccggt tagaccgccg gggtgcggcc ggtcaaaccg gctatatgcg gccagtcaga 4380 ccgccggggt gcggctggtc agactgggcc ctagaggccg ttcagaccgc cgctactagg 4440 ccggtcagac cgcgcatata gcgccggtca gaccgcctag cccctagccg actgtgcaca 4500 gcccttgcac agttcggcta ccccgcacaa taaaattcaa caaaaaattg atttttggag 4560 caattttgaa atgtgtgagt tgaaatattg ccaaccattc ataatatttg aaatttatga 4620 agatttgcaa caaaactcat ttgagtgcta ggaggtgacc atttatggtc tataggggtt 4680 tttgggcgaa tttgattttc aaacaacttt tgaaatattt ggtttttgaa tatgatttga 4740 acaccaaaaa catttcaaaa cttcttctct accaactttg ttttgaaact tttttcaaat 4800 tccttctcaa tctcattttg gggtttaatc tcattttggc caaaaaacaa gattctagtt 4860 tcttcaaaag agggccaaaa tggcattttc attcaaaaaa catttttctt gcaaagtgag 4920 ggttggaaaa catataggga accttttgaa acattttcca agagatagtt ttcaaattac 4980 attgattttg caaaagtttt gacttatgtt gacttttagt tgatttgctc acatataaaa 5040 ggaagtggag cacatgcaag agtgcaaaac tcccccttaa tgtgacatgc tccattttcg 5100 caatgaagaa ccaaatggca ataaatccaa agcataagag caaataggag caaatataca 5160 atatgcaaaa gaagcaacca tggtgcacca tctcaagcca cattagagaa gtctatgaca 5220 attaactcat tcctcaactt gcaaaagcgg gtttcatcaa gaggcttggt aaagatgtca 5280 gctagttgat ccttggttct tatgtggcta atgactatgt cacacttggc aacatggtct 5340 cttaggaagt gatggcgtat gtcaatatgc ttggttctag aatgttggac cgggttattg 5400 gctatcttta tggcactatc attgtcacat aggagtgggg ttttggtgaa ggatatgcca 5460 taatccaaca agatttgttt catccaaagc aactgggcac aacaactacc cgccgaaaca 5520 tattccgcct cggcggtaga gagggctacg gagttttgtt tcttggatga ccatgacaca 5580 agggatctac caagcatttg gaaactacag gatgtgctct ttctatccac tttgcaaccg 5640 gcataatccg aatcggaata gccaacaagc ttaaatttag caccttttgg gtaccacaag 5700 ccaatagtag aggaatgctt taaatatctt agaatccttt tcacggccac taagtgacac 5760 tccttaggag cggcttgaaa ccgtgcacac atgcaaacac taaacatgat atctggccta 5820 gatgcggtaa ggtaaagcaa gctaacaatc atagaacgat aaagctttaa atctactggt 5880 ttacctccct catcaaggtc gagatgcccg ttggttgcca tatgtgtctt gatgggtttc 5940 gcatcctcca agccaaacct cttgagtaga tccttaatgt acttggtttg gctcacgaac 6000 gtcccatcct ggagttgctt gatttgaagt ccaaggaaga agctcaactc tccaatcatg 6060 gacatatcaa attccctaga catcatatca ccaaattcct tgcaaaatac ttcattagta 6120 gaaccgaata tgatgtcatc aacataaatt tggcacacaa agaaatcatc accaatgatt 6180 tttgtgaaaa gagtggtgtc aacttttcca attttgaaat cttttgacaa aagaaaatct 6240 ctcaatcttt cataccaagc cctaggagct tgttttaaac cataaagagc ttttgagagt 6300 ttgtaaacat ggttaggatt tttaggatct taaaaactgg gaggttgttc aacaaagaca 6360 agttcggcaa tttcaccatt tagaaaagca cttttcacat ccatttgaaa tagttttatg 6420 tcaaaacatg atgcaaatgc aagaaggatg agaatagcct taagtcttgc tacgggggca 6480 aaagtttcac caaagtccaa accttcaact tgtgtgaaac cttgtgccac caaccttgcc 6540 ttgtttctta ccaccaaccc gttctcatct tgtttgttcc taaagaccca ctttgtccct 6600 atgacattgt ggtctctagg tctttcaacc aaagtccaaa ccttgtttct tgcaaagttg 6660 ttgagctctt catgcatagc attcatccaa tcaagatcac aaagagcttc atctacatgt 6720 tttggctcaa gacaagaaac aaacgagtaa tgttcacaaa tcgaagcgac acgagatcga 6780 gtttgaacac ccttactaat gtcacccaac acttggtcaa ttgggtgatc cttggaaaga 6840 gcggtgtgta ttcttggtgg aataggtgga tcttgtgcct tctcctcctc cacttcaact 6900 tgagcttgac ttggcgtagc ggaagtagat gacttatctt gagtggaggt ggatggcttg 6960 tcttccactt caataggctt gacatctcca attgacatgt tcttcatagc tctcatcaag 7020 ccttcatcac ctacatcatc caaattctcg tgcccctctt gggagccatt agtctcgtca 7080 aattgaacat cggcggtttc ttccacaata cctttattct tgttgtagac ctggtatgcc 7140 ttgctatttg aggcataacc tagaagaaac ccttcatcac accgattttc aaatttggtt 7200 agtctaacac cctttcggta aatataacac ttgcaaccaa aaactcaaaa ataggcaaca 7260 ttaggcttcc tcccaacaat tagctcatag gaagtctttt tcaagagacg atgtaaataa 7320 agcctattgg ttgtatggca agcggtgttt atggcttccg cccaaaagga atcggaaaca 7380 ctatattcat caagcatagt ccttgccatc tcaatcaata tacgattttt cctctccact 7440 acaccatttt gttgaggtga gtaggtagcg gaaagttcgt gtttaatacc aagatcatca 7500 caatagtcct cgatattggt attcttaaac tcggaaccat tgtcacttct aattttcaca 7560 agagtgcaac taaattcatt ttgggccctt tttgcaaact ttttgaaaag ctcggcaaca 7620 atagacttat catgcaaaaa gaacacccaa gtatagcgag aataatcatc aacaatcaca 7680 agacaatgac tattaccacc aatgctctta taggttgttg ggccaaacaa atccatatgc 7740 aagagctcca atggtctaga tgtggacatg atactctgag taggatgaga acatgcaact 7800 tgcttgccgg cttgacaagc actacaaagc ttatctttct caaacttcac atcttttaag 7860 tccacaacta gatcacgttt tgaaagtttg ctcaattgat tcataccaac atgggctagc 7920 cttctatgcc aaagccaacc caaagaagtt tttgcaacta aacaagtttt caaatttgct 7980 tcactagaat tgaaatcaac caaataaaga tttccatatc taaaaccttt gaacacacaa 8040 gacttgtcaa gaaggctaga aacaataact tcttgcggta agaaagcaca tgacaagcca 8100 agatcacaaa ttcgagcaac cgaaagcaaa ttgaaattta gagatttaac aagagagaca 8160 ttatcaattg acaaatcatt ggagatagca attttaccta acccaattac ctttcctttg 8220 ctattgtctc caaatgtcac tttctcttgt ttattccctc ctacttcaaa tgtggtgaac 8280 atagccctat caccggtcat gtgttgagtg catccactat caaacaccca atggctccca 8340 ccggtgcggt agttcaccta caaaagaaga tcaagctctt ttaggtaccc aaacttgttt 8400 gggtccttgg aggttagaga ccaaagcttt gggcacccaa atggcattct ttttaccacc 8460 gagtataggg gaacccacat atctagcaac aatgctacca tcatgagcct tcctaagcat 8520 ataatgagaa tcaaacatgc atgtcttagg aggtttacca caaggacaat cattcaccaa 8580 atgcccaacc tcacgacact tggagcaata cttaccattg ctcttgacaa aacgagtggc 8640 acagtgagaa ggtttcttac ccttctttgg aatgaatcca agtccctcct tgttaaggat 8700 gcaccgttgc tcactcaaaa tcttgtcaag agtgttctta tccttgaagc acctctccaa 8760 gctcttgttg agcttagcca cttgctcttt aagctcattg ttctcaacaa caagtgaggc 8820 atcacaaata gaaacacaag aggtagagct agagctagac atatccacaa gatcatcaca 8880 agaggtagaa atgctagatg atgcaacatg agcaatatgg caagtagcac tatcaccaag 8940 caaatcacaa gatatgccaa catcaatgag agctccatgt tgagtagtgg aaatgaggtt 9000 gtcttgagct tccttaagct tctcatgaga aatggtgagt ctctcatgag aagtctttag 9060 ctcctcatac aagacctcca aagaagcatg atccttcttt agggccttga acttgacaat 9120 ctccttctca ctataagcat agagctcctc aaacatactc acaagctcat cataggaaac 9180 atcatcacaa tcatcatcac tctcactatc actaagagat gttaccttag aagagccctt 9240 tgccatgaga caaagtggag cgaagagtga tggagcctcc ttgatggcaa caacggccat 9300 cttcttcttc ttggagcttg tatcatcacc atcttcttcc tcggacccgg atgaggcgga 9360 gctctcctca tttgagtccc attccccgat gaaggcctca atcttcttgc cttacttctt 9420 gagctttttc atgagcttgt agcctccact cttcttcttg gatgacttgt ctccatcatc 9480 atccttggaa gggcacttta aagcaaagtg tcccttctca ccacactcaa agcacctcaa 9540 gttggagaga gtcttgttgg gtcttctatt tcttctccta ttggagttgg agccccttcc 9600 tctctccttt ctccttccca agagatcatt gaaccttcta gcaagaaggg caatctcttc 9660 ctccaagttc tcattggctt cattcacctt gccattgccc ttgtcttcaa cttcggcttg 9720 gcgagcaatg cacttcttgg aaggtgaggt ttcctccatc tccttcttct tcaacttgta 9780 catgtcattg gtgttgatct tccccaagag gcttgccggt gtcatccttg acatgtcgga 9840 gttgatgagc atggtgacaa gggtctcata cttctccggt agagccctaa gcatcttttg 9900 ggcaacctca agatcggtgt agtttgcccc aagccccttg agatcatcca caatgacatt 9960 gagcctccca tacatgtcat tcacactcat gaggcaacat ggagaatgtc tcatattgga 10020 tcttgaggaa gtgaagcttg gcatccttgt actcacttgt gccctcatgg atttccacca 10080 acttgttcca aatctcatat gcggtctcaa ggttgctcac tctatcaaac tactcttgga 10140 tcaaagagtt gaacaaagca ttcatggctt gggcattgag ttagaggttg cggtgatcaa 10200 tctccgtcaa gggcgtgccg gtgatagcaa agcctacatc cacaatactc caaatatgga 10260 agctcatagc tttgaggtga gtagacattt taattttcca agtggtatag tttgtgccat 10320 taaacatggg agccttccct acatggttca cctcgttcga catcttctct ctaggcggtg 10380 aagcccaatc aagagagacc aagctctgat accacttgta ggatcgagat gtcgactaga 10440 gggggggtga ataggcaata taaaactaaa tgacacctaa tcaaaactaa tctaagttgc 10500 taggcttggt gagggtcaac tctaactaag aacctaagtt atgttttgca aacctagggt 10560 gatagtggct caattatatc tctaggaaag taaatcacac tcctatgtca atgtttagca 10620 atcctagggt gatatgatct caagtttgca tctagaaatg taaattgcac aaatgtaaat 10680 gcgacaataa aatgagacaa ggagacgaga tttttcaccg aggttcggaa actcgccggt 10740 ttcctactcc ccgttgaggc gagcccaact ccaccactca accacgaagc caccgcacgc 10800 ccccttcgtc aaggggtggg caaggcggga gccggcccac ggagagaact acccaagcct 10860 cgatcactag ggtagttctt ccttcactcc gaaggtggtg aactccaaac cactcataaa 10920 ccggcatcgg gcctcctcca caatcttctc ggagaggtca ccggcaactt ctccacaagc 10980 cgtctaggag gcggcaacct ccaagagtaa caagcaatga cccggtgtgg agatgatcaa 11040 gtgccacact agctctacaa tggaagcaaa tgcacttgac tcttggctaa tcaaccctct 11100 aacgcactag atggatgaac acaaagctca agtgagtgtg agagaggtgc aaggggtgta 11160 tgcaattgaa ttgggtgcca agagagtccc cttgctgctg gtgggggagt atttatactc 11220 tcacccacca aaactagccg ttgggggcga aatcctccaa ctttgtgctc tgccggtctg 11280 accggagata tgtggccggt cagaccgtgc tactctgcaa tggctagaaa actagcagtt 11340 gaagtgctgt cagagggctc catcggcctt gccggtcaga ccggcgttga gtgggcggtc 11400 agaccggcct cggctcggtc agaccgccat cggctcggtc tgaccgacta cggctccgtc 11460 ggctctgtat cagccacctc gagcagcacc atctcggcct ccagggggcc ggtctgaccg 11520 ggcatgtgcc gccggtcaga ccgccttatt gcggccggtc agactggcca gggcacgctg 11580 gtcagaccgc cactatgtgg ccggtctgac cgtccctggt caggccgaac ccagtgaaag 11640 tgcaaagtga tttttgtgtg tgtgatgaaa atgtgagcac aagtgaaaat gcaatgacct 11700 agtgtggcaa ttaaaatcat ctctttgcta ggtcattacc cctcttaata gtacggcgaa 11760 actaaaaata aactagcaaa tttgatcgcc ctacacctcg attaattcta aattaaagcg 11820 ctagttttac cgtcttcttt ccctctgctt tgcgccgtca attttaatcc atcgataatc 11880 atccatgcgc acatatgacg tggacctaac ttaaaatgta tagctcaaag acaacggtta 11940 gtccacaatt agcacttgtc attaattacc aaaattaaca ccaggggcct agatgc 11996 // ID SZ-64 repbase; DNA; ORY; 5342 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 04-AUG-2002 (Rel. 7.07, Last updated, Version 1) XX DE Rice gypsy-type retrotransposon SZ-64. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW GYPSY superfamily; SZ-3; SZ-64. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-5342 RA Jiang N. and Wessler R.S.; RT "SZ-64: a gypsy-type retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 118-118 (2002). XX DR [1] (Consensus) XX CC SZ-64 is a Gypsy-type retrotransposon. It has 297bp LTRs. CC Internal region is related to SZ-3. XX SQ Sequence 5342 BP; 1294 A; 1152 C; 1238 G; 1658 T; 0 other; tgtcacgcct gtgccacacg cgtgacgagc tacaatgcca ggatgacgtt tacagtaacg 60 tgtcgggtgg gtgtgtgcgc atgtgtgttg tgtgattcgg ccaagcggcc aggctggcat 120 gtatgatctt tataagtaag gaaccctgta atgaagagag gtgtgaaatg aagaaaggaa 180 aaacgaatct ctcctctcaa caactctgct ctgccccttt cttcctcgac tctgtctcct 240 cctcctctgt tcttcacctc tcctgctcta gttcttcctt tgctatgatc tagtagtgtt 300 acagtggtat cagattcggg ttttctgtgg ttgatgcgtt caaattctct cgatccgact 360 ggtaaaatcc ctgtgctccg gtagacggct accctcgggt gcggctgctg taagtccagt 420 tcaggtttgg ttggatttgg agcgaacgct caccacgacg cccatcaagc tcagcgctcc 480 attacgccaa tcgctcgagt cgatggaggg gaaattgttg gagaagttgg agttactcac 540 tcagaagatg gaggctatgg acgacaagat gacgaaacac ggagggcggc tcgatcacgc 600 cgtcgtcaag gtggatctcg ctctggaggc ggtcgggaag ctgcagcaag atcagcttca 660 ggcggcgcag ttgcaaaaga gtttggcgtc ttccaatcaa gtgagtattt tgggctcccc 720 atctgcggtt tctcttggca gtgcgggtgt ttccccacca ccaccaccac cgccgccgcc 780 gccgccgccg ccaaggttcc atactcatcc tgtgtttact cgcaacgaag cggagtctag 840 ccagggtttt gattagggtg ttcgtgctaa gagttgcttg cctaagatgg attttcctcg 900 ttttgatggc tctgatgtct gtatttggct agatatgtgc gagacctatt ttgacatgta 960 ccagattccg gctatgttta aggtttctgc agcagtcttg catatgtctg gaaatgcagc 1020 atagtggtac caatccttta agttagtaga agagatttgt gactggtctc aattttgtta 1080 tgcggttgct ctcgagtttg aaagtactgc acagtgtgaa aaagttcagg cgctgcaaac 1140 cttacggcaa actggttcag ttgccgatta taagtcccag tttgattcac tagtgtacca 1200 ggtgcgtgtg tttgatccat ctgtgggagg gatgatgctg ctgtatcgtt ttattctggg 1260 tctaaaggaa gaaatccgct cagttctgct ggtccagtta cctgacactg ttcagcaggc 1320 tgctgcaatt gctttagtgc aagaaagtgt gttactagac agtggacaga aacctcttaa 1380 gaaattgaca tacaaagggg ttggcactaa agtggataca tctgttccta tctctgagcc 1440 atcggccatt aaacctgaaa gagctgaatt atggaaagct aaacagttga aggaatatag 1500 aagagcgaat ggaatctgtt ttaaatgtgg ggataaatat tcacctgatc atcagtgtgt 1560 gatcactggt taattaaaag ctatgcaaat cactgaagtt attccagatg atcttttgaa 1620 tgcagtggtt gccgaagaag attctgatgc tgaggagcag tatcatattt ctttgaatgc 1680 attatctggt gcatctcgcc ataatgctat tcgtttgaga gcattggttc agaataaagt 1740 attgttgatg ttggtggatt ccggcagctc tcatagtttc attgatctca attttgctca 1800 gctgttgggt ttgtagttgt gccctatttc cccttccttg gttcaggtag ctaatggtga 1860 ctttctctct tgtcaatatg tggttcctaa tttcacatgg tggatccaag gtcagacatt 1920 ctcttatgat ctgaaagtgg ttcagttggg gggccatgat gcaatattgg ggatggattg 1980 gttggctcaa tggggtgata tgtcttgtaa ctgggcaact aaaactctga agtttttcta 2040 ccaagatcag tggattgcac tgcaaggtgt tcaagagtct gattcccaga ctgaattatg 2100 tgctatttct taccctcaaa tattgaaatg gcagaagggt tgtgatattt gggatgctgt 2160 tttgcttgaa cctactgaca atgcagattc tcagtccatt tcagaagtag tagctccatt 2220 actgtctgag tttgctgatg tttttcaaga gcccaagtgt ttacctcctc atcgcacttt 2280 tgattatgct atctccttgt accctgatgc tgctcctgtc aacagtaaac cttacaggta 2340 ttctccttta caaaaggatg agattgaacg ccaagtcaag gacatgattg attctggtct 2400 tattactccc agcatgagcc cttttgcctc cccagtcttg ttggtcaaaa agaaagatgg 2460 gacatggcgt ttttgtgtgg attatcgcaa actcaactct gtcactgtta agagtaagtt 2520 tccaatgcca gtggttgatg agttattgga tgagttagcg ggcacacaat acttctctaa 2580 actggacttg agagccggtt atcatcaaat ccgtatggtg gaacaggatg agtttaaaac 2640 cgctttcaaa actcatcatg ggcagtttca attcagcgtt atgccctttg gtttaataaa 2700 tgctccatct acatttcaat gcctgatgaa ttcagtattt gcatctctta tttgcaaatg 2760 tgtattggtt ttcatggatg acattttagt gtacaaccct aacttggatt ctcacctaca 2820 tcatctgaga caagtgttta tgttgttgcg acagaatcag ttatatgcca aaatgtctaa 2880 gtgctctttt gcttgtgctc aattagagta tttgggccac ataatttctg ctaaaggtgt 2940 cagtactgat cctgccaaaa ctgcagcgat gttagcttgg cctgttccac aaactgcaac 3000 tgagttgaga ggttttctgg gcctcacagg ttactatcgc aaatttgttc cgaattacag 3060 cattatagcc aaacctttga cagtgttatt aaaaaagaaa gcattcctct ggtcagatgc 3120 tgctcaacaa gcttttcaac agctcaaact agccatgagt tctaccccgg tgctagcatt 3180 acctaatttc agtcttccct ttgttttgga gacagatgcc tgtgcttatg gagttagtgc 3240 tgtgctcagc cagttgaatc accctattgc ttactatagc aaagctttgg gaccagctaa 3300 tcagaaattt tctatctatg aaaaagagtt tttggctata atgatggctg ttgacaaatg 3360 gagatgttat ttgtagcgct gcccttttac tattcgcact gatcacaaaa gtctatgtca 3420 cttgaatgat caagttcttg gaactgattt gcaatagaag gctatgacta aattgatggg 3480 ttttcaatat acttttcaat acaaaaaagg agttgacaat atagttgctg atgcgctgtc 3540 caggatgcct gttatacctc attgtgctgc actgtcagtg gcttctcccc tctggctcca 3600 ggaggtgtta aattcttatt cagtggatcc tgctgctcaa actttgctga ctgaattggc 3660 tgttcaatct actaatacac aaggtttttc tctgcatgat agattgatca gacatcatgg 3720 ccgagtatgg attggagcta acattggatt acaaacgaaa ttgattactg cttttcattc 3780 ttctcctgtt gggggtcatt ctggcactac tgctacctat caaaggatga agaagttatt 3840 ttcttgggta ggtctgaaat cagatgtggc taactttgtt aagcagtgtc agatttgtca 3900 gcaggccaag tctgaacact gcaagctccc tggcttgtta acaccattac caattcctaa 3960 ggaagcctgg gtggacatat caatggattt tatcgaaggt cttcccaagt ctgatggatt 4020 cactgtcatt cttgtggtag tggatagatt cactaagttt gcccatttta ttcccttgcg 4080 tcatccattt actgcttccc aagtggccaa tgcagttgac aaaacagttt tcaagacaca 4140 tggcatccct cattctatct cagatcggga taaaattttc accagccgat tttggagtga 4200 tttgttcaaa gtgtgggaca ctactctgag tatgagcttc gcttatcatc ctcaaacgga 4260 cggctagacc gagcgtgtta atcaatgtct tgaaatgtac ttgcgttgta tgactcaagc 4320 aacaccaact aagtggaaca aatggctgca cttggcagag tactggtaca atacctcttt 4380 tcacactgca ttgggttgtt ctcctcataa agctttgttt ggagctgatc ctcatgtcag 4440 tcaagtgcta gtacttctct cctcggtcca tcagtcagtg gttgatcttg tttctgaacg 4500 caatcagcta tctgctttct tacaacaaca actgcaacgg gctcagttgc gcatgaagca 4560 tcaagcagac aaaggccggt ctgaacgatc ctttgcagtt ggggatcatg tgtttctgaa 4620 gttgcagcca tatactcaat cttcggtggt gaatcgtcca taccccaaac tagctttcaa 4680 gttctttggc ccatttgaaa ttctggagaa aattggtcag tcggcttatc ggttacagtt 4740 accagactca agtttgattc atcccgtctt tcatgtctct cagttgaaag cacatgttcc 4800 tgatcataca ccggtcttta cttctcttcc tcaccctgtg gttttggatg ccgctgacgt 4860 ttggcctgaa gaaatactcg atcgtcggct tgtgaaaaag ggcaatgcaa cacatgttca 4920 ggtgttgatt aagtggtctt ctttaccggc gcatcaggct acctgggagg attatgaagt 4980 gctcaagacc cgctttccat cagcaccagc ttggggacaa gctgtttctc cggcgggcgg 5040 tactgtcacg cctgtgccac acgcgtgacg agctacaacg ccaggatgac gtttacagta 5100 acgtgtcggg taggtgtgtg cgcatgtgtg ttgtgtgatt cggccaagcg gccaggatgg 5160 catgtatgac ctttataagt aaggaaccct gtaatgagag aggtgtgaaa tgaagaaagg 5220 aaaaacgaat ctctcctctc aactctgctc tgcccctttc ttcctcgact ctgtctcctc 5280 ctcctctgtt cttcacctct cctactctag ttcttcctct gctatgatct agtagtgtta 5340 ca 5342 // ID SZ-56 repbase; DNA; ORY; 5649 BP. XX AC . XX DT 16-AUG-2004 (Rel. 9.07, Created) DT 11-OCT-2005 (Rel. 9.07, Last updated, Version 1) XX DE Rice retrotransposon SZ-56. XX KW Gypsy; LTR Retrotransposon; Transposable Element; SZ-56; SZ-8. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-5649 RA Jiang N. and Wessler R.S.; RT "SZ-56: a retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 110-110 (2002). XX DR [1] (Consensus) XX CC SZ-56 has 425bp LTRs. Internal region is related to SZ-8. XX SQ Sequence 5649 BP; 1527 A; 1163 C; 1417 G; 1542 T; 0 other; tgtcaggcca agccttggaa ggactcaggc tccaagaggg agggctgacg ataagtctga 60 agaatctgaa gaactgaaga tggacggcaa ggcagatgac gcgctacagg gcgacaggga 120 ggaggcgcct atcctgggct gggggcgtcg tcataagaag cccagtgtgc gtgttgtcgg 180 gccagagtgg gtcaagtaac taagtccatc ctgcgcgatg gcgtgcgtga gttgtgctgt 240 tccgacagct gtcatgaggt gttgagactg atataaacag gagaacgaac agaggagagg 300 gtatgaactg agatcacttg gaggcgatgg cggcggaggc ctgatcctgt tggattagga 360 taatacaatc gtgatctcga atatctgagt ccttagctag tttgctcttg ttagtaaccc 420 taacaaaatt ggtatcagag ccaaactcgc ccctctaatc tcttgattcg gctgtgaaat 480 tccgggggaa ggattggggc tgttcttcgg atcagacccc gcgaaaaggc aacttgcctt 540 cctcaggtta gctgaattcg gagcgtgggt gagttggtgt gtgagatcga gacgagagtg 600 gaggtatggc gcaggatagt aagttggatt tgctgttgaa gtcaatggcg gaaaacgaga 660 agaaacggga agaggctgag gcccgcatgc gagctgattt cgcagaactt aagaagtctc 720 tggagatcag gttgcccgcg gtggagaaga aggtggatga cctcgggatc gatctggtgg 780 cgctgagtaa caaggtggag caattggagc acaaccccaa tcagcctcct tcaggagatg 840 aattcgccgg caaggtgacg accgtggcgt tacccaagaa ggagccgatc tacaaggcga 900 caccaccgac caaaggtacg cgtgagcttg accccacttc tcctgttcat cattcaaatg 960 agggttgggg atctcagttt gaaaacacgg ggttcagtgc caggatgatt ggtaatgtac 1020 cgcccatgtc ctgtccgcaa ttcaacggag ataaccctca catgtggaaa tccaactgtg 1080 aagtgtattt tgatgtgtat gggattcatc ctcaaaattg ggtcaaggta gccactctga 1140 atttttgtgg gaacacagcg ttctggcttc agtcagtgag ggctcagttg atgggggtca 1200 cttggtttga attatgtgac agagtttgtg ctagattctc tcgggacaga cagcaagctc 1260 ttattagaca gtggattcat gtttctcaga cttcttctgt ggctgattat gtggataggt 1320 tcgatagtat catgcatcaa ttgttggctt atgggggggc aaatgaacct atctattttg 1380 tgaccaaatt tgtggatgga ctcaaggaca atatcagggt tggtgtgatg gggcacaggc 1440 cacaggacct ggacactgca tgtactttag ctcttttgca gaaagaagct ttggaaggtg 1500 tccaggctat caatgtcaag aaaaatgact ctggaacctt tgttaaatct aaatccacct 1560 caaatttttc tcagtctgtc cttcctagca agagtacagc cttgataaat actgaagaga 1620 aaaggagtgc agagtttagc aggcccaagg atgataagat atcggccctc agagcttaca 1680 gaagatcaaa ggggctctgt tttgtttgtg gtgagagatg gagtaaggat cacaaatgtg 1740 ctacatcagt ccaactccat attgttgagg agttgattca tgccctgcaa tctggaggtg 1800 aagaaaatag ctgttctgat ggaactcctg aaattgatga cgattctttg atggcaatat 1860 catttcatgc tttgcatggt accgattctc ctaagtcaat tagactcaga ggctgggtcc 1920 agggtacaga gttactcatg ctggtggatt cgggtagtac tcattctttt attgacacta 1980 agattggctc caaattgcat ggtgtccaga aattacttca gaccattaag gtacaagtgg 2040 ctgatggagg gcagatagct tgtgatatgt ttttgcctaa gtgcaactgg tggacacagg 2100 gtcataattt taccagtgat ttcaggttat tgccactggg taattatgat gtgatattgg 2160 gaatggattg gctggagcag tttagcccta tgcaaattga ttggattcat aagtggcttg 2220 aattccaaca tcaacatcag ctggtgaaac ttcagggcat tgttcctcag actgattgct 2280 gtccaaccat aacaggagca cagttacagg gtatgtccaa gaatggatct atcatgtgta 2340 tggttcagct gaatgctgtg gaagttcctg aacatgctgt catccccact attgtacaac 2400 ccttacttca agaatttcag gaactattct ctgaacctac tgaattacct cctaagagaa 2460 catgtgacca ccatattccc ctcattgaag gagccaaacc tgtcaatttg agaccctacc 2520 ggtataagcc agctctgaaa gatgaaatcg aaaaacaagt cactgaaatg cttaagactg 2580 gagtcattca acccagccac agtcctttct cttctcctgc ccttcttgtc aagaaaaaag 2640 atggatcctg gcgtctctgt attgattatc gacagttgaa caatatcact gtcaagagca 2700 agtatcctgt cccagtaata gaagagctgt tagatgaatt atcaggggcc cagtggtttt 2760 ccaagttaga tttaagagct ggataccatc agatcagaat ggctgaggga gatgagtata 2820 aaacagcctt ccaaactcat tctgggcatt atgagtacaa ggtgatgtcc tttggcctta 2880 ctggggcccc agctactttc cttaatgcca tgaatgacac attgtcccct gtcctaagga 2940 aatttgtctt ggtctttttt gatgacattt tgatttatag tcccacattg gaatcacatc 3000 tgctccacat cagaacagtt ttacaattac tctctgctag tcagtggaag gtcaaactaa 3060 gtaagtgttc ctttgctcaa caagagatat cttatttagg acacgtgata ggagttcaaa 3120 gagtatctac tgacccacga aagattcaag atgtagttaa ttggacccaa ccaactacta 3180 tcaagaagtt gaggggcttt ctgggcttag caggttatta tagaaaattt gttaagaatt 3240 tcggtgtgat cagccgaccc ctgactcaat tactcaaaaa gggaatacca ttcaagtgga 3300 ctgaggaaac tgaaactgct tttcaacaac ttaaacaagc attatgctct gctcctgtac 3360 tcgcattgcc agatttttct aaatcattca ctgtagaaac tgatgccagt gaacttggga 3420 ttggagctgt tctttctcaa gacaagcatc ccattgcttt ccttagcaga gctcttggtc 3480 ctaaaactaa acgcttgtcc acctatgaaa aggaatacat ggctatattg ctggctgtag 3540 aacattggag accatacctg cagcatgggg aatttactat cctcactgat catcatagtt 3600 tgatgcattt aactgatcaa cggttgcata ctccttggca acagaaggct ttcactaagc 3660 tcttgggtct tcagtataag atctgctatc gaaagggttc ttctaatgct gctgccgatg 3720 ctctttcaag aagggagcca tttaccagtg agatacacgc tgtgtctgaa tgtgtaccgc 3780 tatggatgca agacctgatt caaggttatg atcaggatcc tcacaccaag cagatcattt 3840 cggagctaat tgtcaatggt agcagcagac cccactatca attgtgcaat ggagtattga 3900 agtacaaggg cagaatttgg gtgggagaca atcctgcatt gcagcacagg atcatcactg 3960 aggttcactc tactcctttc ggtgatcact caggttttcc tgtaacctat agaaaagcta 4020 aaggcatgtt tgcttggact ggaatgaaga aaatgattaa gactcatctg cagtcctgtc 4080 aagtttgctt gcaagccaag ccagacaggg ctaaatatcc tggactactg cagccgttgc 4140 cagttccagc tggagcatgg caagtgattt cgcttgattt tatagaaggg ttgccacgtt 4200 catctcatta taattgtgtg ttggtggtaa ttgataagtt ctccaaatac agtcacttta 4260 ttcccctttc ccaccctttc acagcaagtg cagtagctca agagttcatg aaacacatct 4320 acaagctcca tggcctacct catgtgatta tttctgatag agataagatt ttcacgagtc 4380 aattttggga gcagctcttc tctaagtctg gaactaaact gcataaaagt tcagcttatc 4440 atcctcaaac ggatgggcaa accgaacgag ttaatcagtg tctggaaatt tatcttcgtt 4500 gctttgtgca tgctactcca aggaagtggg catcttggta gtatcttgct gaattctggt 4560 ataacaactc ctttcactct actttgggca aaactccttt tgaagtctta tatgggtaca 4620 ctccagctca ctttggcatt actatagagg attgtcagat cactgatttg caggaatggc 4680 ataatgagcg gaagctgatg caacagttat tacagcagca tcttcatcga gctcaacaac 4740 agatgaaaca tcaagctgat aagaaatgca gtttcaggca gtttaaagta ggggattggg 4800 tgtacttaaa actacagcct tatgtacaga cgtcggtagc tcaacgtgct tgtcacaaat 4860 tggctttccg ctactttggc ccatttcaga ttcttgacag ggtgggatct gttgcttatc 4920 gcttacagct accagctggc agttccattc atccagtgtt tcatgtgtcc caattacgag 4980 ctgctgtggg gttttctaaa ccagtgcaag aggaattacc atcttccttg ggagcatttc 5040 agattcccct ccaattcttg gataaacgtc tgactaaaaa aggtaatcgc gttgtggttc 5100 aattactgac gcattggtca gattcatctg cagaggattc cacttgggag gatatggagg 5160 atttatgcaa tcgctttccg cgagcattgg cttggggaca agccaatttt caagaatggg 5220 ggattgtcag gccaagcctt ggaaggactc aggctccagg agggagggct gacgacaagt 5280 ctgaagaatc tgaagaactg aagatggacg gcaaggcaga tgacgcgcta cagggcgaca 5340 gggaggaggc acctatcctg ggccgggggc gtcgtcataa gaagcccagt gtgcgtgttg 5400 tcgggccaga gtgggccaag taactaagtc catcctgcgc gatggcgtgc gtgagttgtg 5460 ctgttccgac agctgtcatg aggtgttgag actgatataa acagaagaac gaacagagga 5520 gagggtatga actgagatca cttggaggcg atggcggcgg aggcctgatc ctgttggatt 5580 aggataatac aatcgtgatc tcgaatatct tagtccttag ctagtttgct cttgttagta 5640 accctaaca 5649 // ID SZ-60 repbase; DNA; ORY; 6462 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE Rice retrotransposon SZ-60. XX KW LTR retrotransposon; SZ-60. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-6462 RA Jiang N. and Wessler R.S.; RT "SZ-60: a retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 115-115 (2002). XX DR [1] (Consensus) XX CC SZ-60 has 236bp LTRs. XX SQ Sequence 6462 BP; 1941 A; 1552 C; 1333 G; 1636 T; 0 other; ataggtggga ttagtttttc cgtttctatt ttcataatct tcttagtaca gctcttggag 60 aatttatccc ctcgtatgcc agctaacact ggccccacac atcacatggc actcacacct 120 actcctttta caaagtacgc tttctcttcc gtatcgcgcc tttacacttt acgccttccc 180 ctgttcctct tctgttgtcg ccaccgttgt gtccatcaga gtgtctggcg tgacatttgc 240 cccccccccc ctcccccctc cgagcaggag cttgtcccca agcgattggc tcaggaaacc 300 tggcacggac cacttcataa tcttcccatg tagcccactc tggtgccaga gagccccaac 360 gaacaagctc ttgaaccacc aaggcattac ctttttttga acatacggcg atccaaaatt 420 gcagagggaa ccaattcagt aatgtccagc tgcaatggag agggcaacga agaaaagaca 480 ggcttggcat cagggacaaa ttgtttgagc tgctactcat ggaacactgg atgaaaccca 540 ctgtgatcag gaagttgcaa tcgatatgcc acagaaccaa tcttatccac aattgggaaa 600 ggaccaaagt acttaaacac cagcttagga aaaggttgag aaacaacaga cttctgggca 660 tacggttgaa gtttcaggag aaccagatca ccaatctgaa atgagcgacg agtacgcttc 720 agatcagctg tttttttcat cctattttga gcacaggtga gatgatgctt cagcaaagaa 780 gaaaacatag cacgttctct gagcaaagca tcagctacag gagaatcaga gtcagtagat 840 gcaaaggcat taactgacat ggcagcagtg gcggatccag aaaatcgatt agttggtatc 900 gtaacgtgtc tatcaatgtc atagtatgct aattatgctt agatcatagt gttataacat 960 atagataagt cgttttgcta tagattttgc cgaaagtcgt cggtgtcgcg tgacactagc 1020 cttagtactg tagatccgcc cctacatggc aggaagaaga ccatacgaag gatcagtgcc 1080 aacagtgatt tttaaggaga gcattgtaag gcaaagtggt aatttgtatt ataccaaaac 1140 tgtgctaaag ggagccaagc acaccactaa tgtggggaag aggagaccgc acacctcaaa 1200 gacatctaca ggcattgttt aacacgttcg gtatggccat cagactatgg atggtatgca 1260 gtagagagat gtaatggcac ttcaaacctc ttaaacaaag tctgcccaga aattacttgt 1320 aaacacctta tcgcgatctg aaacaatgga cttgggcata ccatagagag aagccatatt 1380 gttcagaaat aactcagcca cctacaaagc tgaaaaggga tgtttaagag gcagaaaatg 1440 agcaaattta gtgtatctgt caaccaccac caagataaca ctgctcccct tagaagtggg 1500 caaaccctcc acaaagtcca ttgagatatc tagccatgca ccagatggaa ttgttaatgg 1560 ttgcagcaac ccaagataag aacagtgctc atgtttagct tgctgacaca ctgcacattg 1620 ctagacaaat tcttccatgg atttctttaa acccttccac acaaacaatt tcttcactcg 1680 ctggtatgta gcttgaatcc cacagtgacg tcctattgca aaagagtgga aggctgcaat 1740 tagtttggtc tgcaaagcag aattaactcc aatccagatt ttatcagctt tccttatcaa 1800 cccatgcgac aaggtaaaac cttgagaatt aggagaggta atggccaatt attgcaataa 1860 ttatttagca aaaagatcta ccacatatga attagggacc tcctgaaccc aagcaggttg 1920 aacaactgaa ataggaaaaa gatgccccac tctagagaaa gcatcagcag acttattatc 1980 cacccccgac caatcagttt agtcatggcc ttcttctgca aatctgtact gcgagtcgcc 2040 cccattacta gttcggcgtg ctgtcagtat ctaaactctg atcatccaaa tgataaaggg 2100 ctttatgatc agttttaata acaaaaggac tagtgagtaa ataagatctt tacttatcca 2160 caaccattat aatagccaaa aattccttct cataaattta taatttctga ttagcaatgc 2220 ccaatgcttt cctgtaaaag ccacaggatg cccttcttga gatagcacag ctccaatgcc 2280 agtagcacaa gcatcgattt ccagaacaaa aggtttggaa aagtcaggga gagtaaggac 2340 aggtgtagta cacatagcag tttttagagc tgcaaaagct tcctgagctt gaggagtcca 2400 tacaaactta gtgttcttct gaagcaacat ggtgagaggt ttagccaaaa tgccatagtg 2460 ttgcacaaac tttctataat acccagtgag acaaaaaacc atcttagttc agtgacatta 2520 gtaggaatag gccaagaagc catagcttga gttttctcag gatctgtggc tacaccttca 2580 gcaaagataa tgtggcccat gtattccaat tgagaagtgg caaatgaaca cttggacaac 2640 ttagcacata actgatgctg ctcgcacatt tagctagcaa tctagaactc gaacttgggt 2700 gtccaacttg gaaaactata aaaaattagg attcagagac tcgtctaata tatgaaattt 2760 attcattaca aaataggaaa attgatttga tcaagtagaa ggatcattga gggctagtat 2820 gaaaataaat atgaaactta gggcttatat ggaagaaatc aactaaatga agaagttctc 2880 gtaatattta caaagtccag gggctaaaat agaagatgat aggagatatt tatccaccca 2940 tcccattgat ggaagaggat ccccattgac cctatctcgt tcccatcgct atctccactc 3000 tccagtcgat ccagcgcgtc tccaccgccg atccagagtc tccaccgccg gcgctccaga 3060 tccgcctctt cctctgctcc ggctgctcca cctcttccca tgcacgcctg ccgttgctgc 3120 tgggtggatt cggggacgct gacagcctac gaatgccggt ggccggggat gacaatgacg 3180 acgactgcgc tgtccctggt cagctgtttc aaaacccctt ccgctgctcc ttgctatcga 3240 tctcccatct actttggact ctcctagccg cgtcgacgcg gggattgggg agccaggagt 3300 agccgaccag ctctagggtt agggatttag ggttattatt gggctgagaa aatgggccaa 3360 agaaaaataa ctggggccag ccggccagat gtttataaaa aggataattt accggaatat 3420 ataaacggta attactggta taatacggta accacacaaa acggttggta aattaccaaa 3480 ctatttccga tattgtttcc gtatttttta ccgtttccgt tttcgattac gatatttacc 3540 gtttccggaa cgtccgattg gtcaaattcg aaaaaggtag cccggtcggc cggtaattac 3600 cgctactgtt ttcatccctg gtaacaacta caacaccagc tctaagtggt gaccatgctc 3660 ctccaaagat ttgttgcata tcaatatgtc atccatgaac actaaaacaa attttctcaa 3720 gaagggagca aagatagaat tcatgagaca ctgaaaggtt gcaggggcat tagttaaccc 3780 aaatggcatc accctgaatt ggacatgacc atgatgggtt ttgaaagcag ttttatactc 3840 atcagcctcc aactttctaa tctagtgata tccactttta agatcaagtt tggagaaaaa 3900 cttagtacta gctagctcat ccaaaagttc ctccactatg ggcaaaggaa tttgttctta 3960 attgttaaag aactcaacct gcggtattcc acacaaaatc tccagctgtt gtccttcttt 4020 ttaaccagcg acacaggaga tgcaaaaggg ctacaactgg gagtaatgag tccaccggtc 4080 aacatttcga aaacttgttt ctcaatctca cctttctgag caggagaata tctgtaaggt 4140 catgaattaa ctggcacaga attaggtaac aaggtaattg aatgattcag caccctatca 4200 gggggcaggg tactatactg ctgcagtagc tgctgtatag caggatattc agaagaagaa 4260 ctagacattg cagcaacagg ttcaagcata gccatagccc atatatcatt accctgatcc 4320 catttaacca cctgagttgc tgagacttca gttacttcaa ttacaatagg agaggcaact 4380 ccttgcaaaa taatttcagc cccctgatag gaaaactgaa ttgtctttgc agcctagtca 4440 cagggtcata ggactatatt gtgttaacca atccatgcct agcaccacat catatcctcc 4500 catgggtaga agacgcatag taaaagagaa atgatatccc tgcacccacc aagtaaattg 4560 gggaatcttg gcatcacaag acagtacctc tccattggcc actttaactg aaataggtag 4620 agttgcagta gtaggaagct gtaacttggc acacaaatca gaattcacaa agctgtggga 4680 actcccagaa tccacaaaaa tcagaataac ctgattaccc accagcgctc tcagctgaac 4740 agtagccgaa gaacaggtac cagctagagc atgcaaggag agattaaaat cctcttctac 4800 caattcagga gcagtgagca tccaaaatat catcaaacaa gatcactggc tcttcctgca 4860 cagcaacttt aactcagcct cttgtttgac acagacttga ccagaaacat acttatcacc 4920 acatttgaaa cacagaccct gagcccttct atattccttc agctgctgtg ctttccacaa 4980 ctcaccacga gccaacttag gtttctcatt gcctctacca acagcattat ctcggcattg 5040 attaaacctc ttccttggtt gtccaatatg agcaccctcc tgagccaaag caacaagaca 5100 atcctgggta acagtagtag gctgagctgc ctgaacgaaa gacctcaagt catccttcag 5160 tcccaacata aagtgagaaa ccaaaacaga accacacaag agcgggtcat acagacgaat 5220 ctgataaaca agttcactga attttgaaca atattctatc actgtgctag tatgtttgag 5280 taacagtaac tcatccattt tcacagacct aaggtgcaca tcaaattccc tagaaatagc 5340 agttttcaac atctcccaat catgccaacc cacttctaac ttccatgtct gataccaatt 5400 tgcggcatca cccatgagat tcatagatgt tgctgaaact agaaatgctt ccatgatttg 5460 atagaaagca aaataagtct cacaattatc aatccacacc ttaaccccat ttccatcaaa 5520 cttcggaaaa tccattttag gagtccactg acgatgaccc atgtcacaat gctcacaatc 5580 acccggagag taatgaggtg aaggtaccca atggaggagg tggtggtggt tgtggttcag 5640 acgaggttga agccacagaa cccgaataag gagtcgacaa caatggcgct tgatgtggtg 5700 tttctggcgg caacggtggc ggtggtgatg gtgccacaat gatcgccttc agagcccgtt 5760 cgacccaagt ttgctcttgc tgcacctggt caagggaggt caaggagaga tccaccttgg 5820 tttttacccg acccaaccgc tcgccctgct gctcgagctt gaggtcaatc tacatcaagt 5880 gcgtggcgat gtcgtccttg gcagccattg cattcatggc atccaacaag cgctcctcca 5940 tggatttcat cgctgcgatc gtctgccgaa cctgcaaact tggtttggct ggcgccgtgc 6000 cgtcgtcttc tccaaacccg atcaacctag ccttgattta ccgcaaatca acctgaagga 6060 agaccacgaa cgaaacaccg gatttactga tcaagagtcg agagagtgcg agagatagcc 6120 cgggatcgaa aagcgaccga taccaacttg gcatggccct aatcacggcg acggagctcg 6180 ccggagttgg gggaatagca aaggaagaac agaggaagga gaaggataca gagtaggtgg 6240 gattagtttt tccatttcta ttttcataat cttctcagta caactcatgg agaatttatc 6300 ccctcacacg ccagctaaca ctggccccac acacgacatg gcactcacac ctactccttt 6360 tacaaagtac gctttctctt tcgtatcacg cctttacact ttacgccttc ccctgttgct 6420 cttctgttgt cgccgccaat gtgtccgtca gagtatctag cg 6462 // ID SC-10 repbase; DNA; ORY; 4919 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 04-AUG-2002 (Rel. 7.07, Last updated, Version 1) XX DE Rice copia-type retrotransposon SC-10. XX KW Copia; LTR Retrotransposon; Transposable Element; KW COPIA superfamily; SC-10; SC-4; SZ-13; TTO1_NT. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-4919 RA Jiang N. and Wessler R.S.; RT "SC-10: a copia-type retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 34-34 (2002). XX DR [1] (Consensus) XX CC SC-10 is a Copia-type retrotransposon. It has 361b LTRs. CC Internal region is related to SZ-13, SC-4 and TTO1_NT. XX SQ Sequence 4919 BP; 1639 A; 852 C; 1076 G; 1352 T; 0 other; tgttggagtt aatttatttc tagaacatac cagcctactc tctaactctc tctactactc 60 atgaaacaaa agtcaaggag caagtccttc ctctgtgaaa tttctagagt agtgtagaca 120 ataatatgtt ctttgtgagt tctagtattt tcatgcatgt accagtacta gttgtgttca 180 gaaaagttcc tagccatcct ataaataggc agctatgtcc tagatgtgat gctgctgtcc 240 aacaatcaat gtaacgtgca atacttgagc aaagcataac cagtttgtga aacaaacaca 300 gagcttctct cctctgttct ccttctctgt tccattgcta gcaaaataat caacaacaac 360 aactggtatc agagcgccca ggttcgagta gggcgtgacg gagtagcacg gcgtatcggt 420 attgtcaatt gaagctacaa gtatggcttc aagttcgggc gccacaatgg cgcagtctat 480 ggttcctgta tttgcaggag aaaattatga tatatggagc atcaagatgc ggacgctgct 540 gctatctcaa ggattgtggg atattgttga gaatggctat caagagtatt ccgctggaga 600 aactcttacg gcggaacaga aaaagtcttt ggcagaggat cggatgtcgg acgccaaggc 660 cttgttcttg atccaacaag gagttgcgga aagtctattt ccgcgtatta ttggcgccaa 720 gaaatccaag gaagcatggg acaagttgaa ggaggagttt caaggatctc agaaggtact 780 tgcggtgaag cttcaaacct tgagaagaca atttcagaat ttgctaatga aggagtcaga 840 gaaggtaaaa gactatttct caagagttat tgagatcgtt aatcagatac gcctctatgg 900 tgaagatata aacgaccaga aggttgtgga ggaaatttta atcagtctgc ctgaaaaata 960 cgagtacatt gttgctgcta ttgaggagtc gaaagacttg tcgactctca caattcagca 1020 actaatgagc tcgttggaat ctcacgaaga aagaaagctt cagcgcgaag ggagctctat 1080 tgaaaatgca tttcagtcaa agttgagctt caggcctcaa aactcaaggt ttcgcggaaa 1140 ttttcaaaaa aatggatttc caatgcgaga ccgtggttat tttcagaaaa atggcttttc 1200 caggcagaag gaagatggtc aagagagaag agaaaaaggt acgtccagtt caaatttgtg 1260 gtgtgacatt tgccaaaaat ctagtcatac tacagatatg tgctggaaga aaatgacctg 1320 caacaagtgc aaaagaaagg gccatattca aaatattgca gaactcgaga aattaatcgg 1380 gctaattttt cacaagaaaa ggaaaaatct gaagaaatgg ttttctcttg ccatactgct 1440 caagaagaaa aagatgatgt ttgggttatt gacagtggtt gtacaaacca tatggccgct 1500 gatccaaatt tatttcgaga aatggattca tcgtatcatg caaagatcca catgggaaat 1560 ggctctatag cccaaagtga aggcaaaggt acggttgctg ttcaaacagc agacggtcca 1620 aaatttataa aagatgtttt gttggtaccc gatttaaagc aaaatttgct aagtattggg 1680 cagcttctag aacacgggta cgcggtttat tttgaagtct tttcttgcaa aatattggat 1740 cgtaaaataa tcgtctggtt gccaaaataa atatggagaa gaacagaaat tttctattaa 1800 ggatgaatca tccaactcaa atggctctca ggagtgaaat tgatatttcc gatttatggc 1860 acaaaagaat gggtcatctt aattacagag cattgaagct actcaggaca aaaggtatgg 1920 ttcaaggcct tccatttatt actctcaagt ctgacccatg tgaaggatgt gtatttggaa 1980 aacaaattcg ggcttctttt ccccacagta gagcttggag agcaagtgca ccattggaac 2040 tagtgcacac tgatatagtt ggtaaagtgc caacaatttc agaaggagga aattggtact 2100 ttatcacatt tatcgatgat tatacaagaa tgatctgggt atattttcta aaagaaaaat 2160 ctgcagcctt ggagatattc aaaaaattca aggccatggt ggaaaatcag agtaatcgaa 2220 aaattaaagt attgcgcagc gatcaaggag gagaatatat ctcaaaagaa tttgagaaat 2280 attgtgaaaa tgctggcatc cgaagacagc taacggcagg ctatagtgct caacaaaatg 2340 gagttgcaga acggaaaaat cggacgatca atgatatggc caattctatg ctccaagaca 2400 aaggtatgcc taaatctttc tgggctgaag cagttaatac tgcaatttat attttaaata 2460 gaagtcctac caaggcagta ccaaaccgta caccttttga agcttggtat ggtaaaaagc 2520 ctgtcattgg tcatatgaga gtatttggtt gcatttgcta tgctcaagtg ccagcacaaa 2580 agagagtaaa atttgataat aaaagtgatc ggtgcatatt tgttggctat gctgatggta 2640 tcaaaggcta tagactttat aatttggaga aaaagaaaat tatcattagc agagatgtga 2700 tttttgatga gagtgctaca tggaactgga agtctccaaa agcctctagt actccattat 2760 tgccaaccac taccatcaca ctaggccaac cacatatgca tggcactcat gaagtggaag 2820 atcatactcc aagtccacag ccatcaagtc caatgtcaag ctcaagtgct agttcagatt 2880 caagcccgag cagtgaagag caaatttcta caccggaatc agctccaaga cgggtaagaa 2940 gtatggttga attattagaa tctacttctc aacaaagagg gtcagaacaa catgaatttt 3000 gcaattattc agttgttgag ccacaaagtt tccaagaagc agaaaaacat gataattgga 3060 taaaggccat ggaagatgag attcatatga ttgagaaaaa taatacatgg gagttggttg 3120 atcgtcctag ggacagagaa gttattggag ttaagtgggt ttataagaca aaattaaatc 3180 cagatggctc agtttagaaa tacaaggcaa aacttgtggc aaaaggcttt aagcaaaagc 3240 ctgggattga ttattatgag acatattctc ctgttgccag gctagagaca attcgtacca 3300 taattgctct agcagctcaa aagaggtgga agatttatca acttgatgtt aaatcggctt 3360 tcttaaatgg ctatcttgat gaagaaatct atgttgaaca acctgaaggg ttttcagtcc 3420 aagggggaga aaataaggta ttcagactca agaaggcttt atatggatta aagcaagcgc 3480 ctagagtgtg gtatagtcaa attgacaagt actttattca gaaaggattt gccaagagca 3540 taagtgagcc tactctatat atcaacaaaa caggtacgga tatcctaatc gtctcactct 3600 atgttgacga tttgatatat actggcaata gtgagaagat gatgcaagac tttaaaagag 3660 atatgatgca tacatatgaa atgagtgatc tgggcttgct ccactatttt ctcggtatgg 3720 aagtgcatca aagtgatgaa ggaatattta tatcacaaag gaaatatgct gaaaatattc 3780 taaagaaatt taagatggat aactgcaagt cagttacaac ccccttgttg ccaaatgaaa 3840 agcaaaaggc tagagatgga gctgataagg tagatccaac aatttacaga agcttagttg 3900 gaagtttatt atatttgacc gcaacacgac cggatattat gtttgcggca agtttattat 3960 caagatatat gtctagccca agtcaattaa attttaccgc tgcaaagaga gttttgcggt 4020 atatcaaagg gaccgcagat tatggtatat ggtataagcc agttaaagaa tcaaaattaa 4080 ttggctatac ggacagtgac tgggctggat gtcttgacga tatgaagagc acatcaggct 4140 acgctttctc acttggttca ggtatgtgct cctggtctac aaaaaaacaa aatattgtcg 4200 ctttatcttc agccgaagca gaatatgtag cagcatcaaa agctgtttca caagttgttt 4260 ggttgaggag aattatggaa gatctgggcg agaagcaata tcagcctact acaatttatt 4320 gcgacagtaa gtctgcaatt gcgatcagcg aaaatccagt cagtcatgac aggacgaaac 4380 atattgctat caagtatcat tatatccggg aagcagttga tcgccaggaa gttaaattgg 4440 aattttgccg aactaatgag cagttggcag atatatttac caaggcttta tccaaagaaa 4500 aatttgtccg cgacagagag ctcatcggag tttgcaagaa ataaattaag ggggagtttg 4560 ttggagttaa tttatttcta gaacatacca gcctactctc taactctctc tactactcat 4620 gaaacaaaag tcaaggagca agtcctttct ctgtgaaatt tctagagtag tgtagacaat 4680 aatatgttct ttgtgagttc tagtattttc atgcatgtac cagtactagt tgtgttcaga 4740 aaagttccta gccatcctat aaataggcag ctatgtccta gatgtgatgc tgctgtccaa 4800 caatcaatgt aacgtgcaat acttgagcaa agcataacca gtttgtgaaa caaacacaga 4860 gcttctctcc tctgttctcc ttctctgttc cattgctagc aaaataatca acaacaaca 4919 // ID RBTVL_I repbase; DNA; ORY; 5949 BP. XX AC AE017121; XX DT 04-AUG-2005 (Rel. 10.07, Created) DT 24-AUG-2005 (Rel. 10.07, Last updated, Version 2) XX DE Rice tungro bacilliform virus like LTR-retrotransposon (internal DE portion). XX KW LTR Retrotransposon; Transposable Element; Interspersed repeat; KW RBTVL_LTR; caulimoviriadae; endogenous badnavirus; LTR; KW reverse transcriptase; RBTVL_I. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-5949 RA Kunii M., Kanda M., Nagano H., Uyeda I., Kishima Y. and Sano Y.; RT "Reconstruction of putative DNA virus from endogenous rice tungro RT bacilliform virus-like sequences in the rice genome: implications RT for integration and evolution."; RL BMC Genomics 5(1), 80-80 (2004). XX RN [2] RP 1-5949 RA Jurka J.; RT "A recent copy of LTR-retrotransposon related to Rice tungro RT bacilliform virus."; RL Direct Submission to Repbase Update (04-AUG-2005). XX DR Genbank; AE017121; Positions 209328 203380. XX CC LTRs are 99% identical. Present in multiple copies in the rice CC genome. XX FH Key Location/Qualifiers FT CDS 503..5788 FT /product="RBTVL_I_1p" FT /translation="MDISRSLFRRIASRDDNCSDKQKGKYDDIDELKDVAQ FT VDKQLERYQRDTLRAIRPQQVYCMGFFENKNGLYRISREVELSVLTKPVEL FT KIVAKEFENSLKYSGYKYIHQGMYIIGIKGMTRKKLGAKVLITLLDKRWDT FT INKASLGYLEGDMNENMLITYIAPDLMMPVNEFIDKMSFGFQTKGYEEFKG FT TNLLISIEFIGRLTNRSASKYKINVNDVIEKMHSKGIKFMSPLIIDSEERA FT GEKWPISEFIKNKTLSQPENFISYQDSKGNVSIRFTNYKTRASDDLDAESS FT DRDIIDNRRHSISELMEKLDHESEIKYYEDKLRDIADEYNNSMKSEWPKIR FT DKELYFYRELSRIKKQKKEKSLVIEIPRTQEIKIEQIKSEEPREEIQKLDK FT VLSEEEQWEVNEKLLLESYEEENNLIEEIENIEEEDNAEQYNDFIDSLDEE FT GLHNLDNAMEAMEVDLGTGKRKRYGEGSVKNEGERERPARAAGRWPPEKEE FT YSYHYIPGQYRHMGTKRRDFEKPIKFQNQKSDGAILNLAAHDPIDWPNIIS FT IWKGLIVQKYIQNQHNIGNKVEDMITYLETFLGESAKVLWEQWVEKNPNNY FT EELKRAGSNPHNFENIVSNIIIAEDPELGYTTLQNERLKEIEKLTLTSWKG FT IKEFSQHYLYNATTAKQGYNKGIVERYFNKLPDPLGSMIFEEYKKETEGAE FT INISQAITFVFKQLRKICTGIQAQRSMKHSDYNFCNKIIQIPLSYGEDRPR FT NKRNHRYQSRNSNNIKTKKRYFLRRSDNRAPFLHKRNVRRYNPKKTYDKTC FT RCFICNSPDHLSRTCPNKDQKRYSSTYEEQERVLIIDSVNENILVCDDEIK FT DDESIYSIIETDEIENTNEEYESTDEELDLIDELAGLKIELMDQLNCEHDW FT IRGKGDYNIKCAFCIYYPSQDNRVTCSICLKQACAECIKANKQKWRKEIEL FT ESDERILSSRVRVLENRINKLEVELENLKINYDIKALPENKDIQNTEFKEQ FT VITLKDSNTAKIIQLKDAITNFGNKYIVKLPFKEILGIRIPVKVKLSPKVS FT YKILALVDTGCTKNIIHDKYFIKCPEIVHTIDDNKAEVSTDMSGIKKIHNQ FT LAHNVEVYINGTKYIIDEITIRNLSMISDDMIIGLRFLQQSVQTTVIHEQG FT ITFIPYQNNVPYISEVRKRGGARIKPDNLEALNLESEERINEYELSENIDN FT YSFSSYLPKSMELPGKTSWEDRYLLKATKDFEYICREMASQKSEWLTNMSS FT WRLPQLPRGHGERFNHNFRITELQQGLLNLLWQTKNKKEKAHALNGLAYYF FT KNFVPSDQKITEKRAKIQDIPHHEERLLDYREEKSRDGQDKLPMEVEQSMA FT TDKNTKVFSDKILISADPASSMVAFHININNLLQSFPHNKPSSSTKRHDTI FT PQTPYILHNHPNLFLPQYILRTQPKAPCRSCAYKDSCKKKLKSQNPMSTTY FT ENLQPRLSFKTEQTLSCFGQDILDLVWQKFKERQMKIFLGLQDYFFDLLEG FT RERNPAIRVIIYMLPLLRLDDQAISDPSYRFLVLKAEINLQRFRNLPTYNH FT EEISLQTIIDHGLVNSIYATLDQILQSDLGNAVKDVCRRLGHGRYRIIFSS FT IPPKFTPPVRPAIHYIYIMKGQFNFQEDGPSKLSDEEEEIYTTVANHENWR FT LFSEAAEIEEAITTDYEYQLVFQNKITRIFISKFYNQSYEYFKGAGRIIKP FT DFGNECSKKSYYRSLAQWFQKTEPSEIDTVQSAPMIINEDNE" XX SQ Sequence 5949 BP; 2476 A; 867 C; 1070 G; 1536 T; 0 other; taggtttgtc tgaagcatag gtgtggtgta tattgtctga agcataagtg tggtatcaga 60 gcctggtaat catagagaag ctaaatttag aagctaatat tggaaagtta ataaatacca 120 aagataatat cgacataagg tgtagactaa gccatactga agaacatagt tggcactcta 180 ataatagcca actaaattta attgtagatt taatatataa tttctatata aattggagta 240 agagacaaga agatttagag caaaagttag aagatatata taaagaacaa aagcaatttg 300 tagaacaata ttcttttctt aataataagc taaatactac attagaatta ttagaagatt 360 ataagataag gcaaaataaa atttcacaga atagtgatta tattaaagaa ttactagaca 420 aaatcaactc tagtaaaggt aaggaaatag ttttggcttc atctggcata gtctcatctt 480 cacaagccat taattctgaa aaatggacat atctaggagt ctctttagaa gaatagcaag 540 cagagatgat aactgttctg ataaacaaaa aggcaaatat gatgacatag atgagctgaa 600 agatgttgca caagtagata agcagctcga aagatatcaa cgagatactt taagggcaat 660 aaggcctcaa caagtatact gcatgggatt ttttgagaat aagaatgggc tttatagaat 720 atctagagaa gtagaattaa gtgttctaac aaagccagta gaattaaaaa tagtagctaa 780 agaatttgaa aatagtttaa aatattcagg atataagtat attcaccaag gtatgtacat 840 aataggaatc aaaggaatga caagaaagaa attaggagct aaagtgctaa taaccttatt 900 agataaaaga tgggacacaa taaacaaagc atctttaggc tatctagaag gagatatgaa 960 tgaaaatatg ttgataacct atatagcgcc tgatttaatg atgcctgtaa atgaattcat 1020 agataaaatg agttttggtt tccaaacaaa aggatacgaa gagtttaagg gaacaaattt 1080 attaataagt atagaattta taggaagatt gactaataga agtgcctcca aatacaaaat 1140 caatgtaaat gatgtgatag aaaaaatgca ttctaaagga ataaaattca tgagcccttt 1200 aataatagac tctgaagaaa gagcaggaga aaaatggcca attagtgaat ttataaaaaa 1260 taaaaccttg agtcagcctg aaaacttcat aagttaccaa gacagcaaag ggaatgttag 1320 tattagattt acaaattata aaaccagagc ttcggatgat ttggatgcag aatcatctga 1380 cagagatatt atagataaca gaagacatag tatatctgaa ttgatggaaa aattagacca 1440 tgaaagtgaa ataaaatatt atgaagataa attaagagat atagcagatg aatataataa 1500 ctctatgaaa agtgagtggc ctaaaattag agacaaggaa ctttatttct atagagaact 1560 atccaggatt aagaaacaaa aaaaagagaa aagcttggtc atagaaatcc ccagaaccca 1620 ggaaattaaa atagaacaaa taaagtcaga agaaccaaga gaagaaatcc aaaagttaga 1680 taaggtatta agtgaggaag agcaatggga agtaaatgag aaattattac tagagagtta 1740 tgaagaagaa aacaacctga tagaggaaat agagaatata gaagaagaag ataatgcaga 1800 acaatataat gattttatag actcattgga tgaggaaggt ttgcataatc tagataatgc 1860 aatggaagct atggaagtag atttgggaac aggaaaaagg aaaagatacg gagagggttc 1920 tgtaaaaaat gaaggagaaa gagaaagacc agccagggca gcaggaagat ggcctccaga 1980 aaaagaagaa tattcatatc attatatccc aggacagtat aggcacatgg gcactaaaag 2040 aagagatttt gagaaaccaa taaaatttca aaatcaaaaa agtgatgggg ctatactaaa 2100 tctagcagca catgatccca tagactggcc aaatatcatt agtatttgga aggggttaat 2160 agttcaaaaa tacatacaaa atcagcataa tatagggaat aaggtggagg atatgataac 2220 ttatttagaa acatttttgg gtgaatctgc taaagtccta tgggaacaat gggttgaaaa 2280 gaatcctaat aactatgaag agctaaaaag agcaggaagt aatcctcaca actttgaaaa 2340 tatagtatct aatattatca tagctgaaga cccagaatta ggatatacaa ccctgcaaaa 2400 tgaaagatta aaagaaatag aaaaattaac tttaacaagc tggaaaggta taaaggaatt 2460 ttctcaacat tatctatata atgcaacaac tgctaagcaa ggatacaata agggaatagt 2520 tgagcgatat tttaataaac tacctgaccc attaggtagt atgatttttg aggaatataa 2580 aaaggaaact gaaggagctg aaattaatat ttcccaagcc ataaccttcg tgttcaaaca 2640 attaagaaaa atatgcacag gaatacaagc ccaaaggtca atgaaacatt ctgattataa 2700 tttttgcaat aaaataatac aaataccttt atcatatgga gaagataggc ctagaaataa 2760 aagaaaccat agatatcaaa gtagaaatag caataatata aagacaaaga aaaggtactt 2820 cttaagaaga tcagataata gagcaccttt cttacataaa cgaaatgtaa gaagatataa 2880 cccaaagaaa acttatgata agacatgcag atgtttcata tgtaattcac cagatcattt 2940 aagtagaact tgcccaaata aagatcaaaa aagatattct agtacatatg aagaacaaga 3000 gagagtttta attatagata gcgtaaatga aaatatatta gtatgtgatg atgaaataaa 3060 agatgacgaa tcaatatatt ctatcataga aacagatgaa attgaaaaca ccaatgaaga 3120 gtatgaatca accgatgaag agttagattt aattgacgaa ctagccggtt taaaaataga 3180 attgatggat cagttaaatt gtgaacatga ttggattaga ggaaaaggag attataacat 3240 taaatgtgct ttttgcatct attacccaag ccaagataat agagtaacct gtagtatatg 3300 cttaaaacaa gcttgtgctg aatgtataaa agcaaataaa caaaaatgga gaaaagagat 3360 agaattagaa tcagatgaaa ggatattatc tagtagagta cgagttttag aaaacagaat 3420 aaataaacta gaagtggaac tagagaatct aaaaattaac tatgatatta aggcattacc 3480 agaaaataag gatatacaaa ataccgaatt taaagagcaa gtgataacat taaaagacag 3540 taatactgct aaaataattc aactaaaaga tgccataact aattttggaa ataaatatat 3600 agtaaaactg cctttcaaag aaattttggg aataagaata ccggtaaaag taaaactatc 3660 acccaaggta tcatataaaa ttctagcact agtagacact gggtgtacaa aaaatattat 3720 tcatgataag tacttcataa aatgtccaga aatagttcat acaattgatg ataataaggc 3780 agaagtctct acagacatgt ccggaataaa gaaaattcat aatcagctag ctcataatgt 3840 tgaagtatac attaatggaa ctaaatatat aatagatgag attacaataa gaaacttatc 3900 catgataagt gatgacatga taattggcct aaggttttta caacaatcgg tacaaaccac 3960 agtaatacat gagcaaggaa ttacttttat cccatatcaa aacaatgtgc catatatctc 4020 agaggtacga aagcgtggtg gagccagaat caaacccgac aaccttgaag cacttaatct 4080 tgagtctgaa gaaagaatta atgaatatga gcttagtgag aatatagaca actattcttt 4140 ctcatcatat cttccaaaat ctatggaatt gccaggtaag acatcatggg aagatagata 4200 tttattaaaa gctactaaag attttgaata tatatgcagg gaaatggctt cacagaagtc 4260 tgaatggctc acaaatatga gttcatggag actgccccaa ctgcctagag gccatggaga 4320 acgatttaat cacaatttca gaataacaga gctacaacaa gggttattaa acctcttgtg 4380 gcaaacaaaa aacaaaaaag aaaaagctca tgccttaaat ggcctggcat attatttcaa 4440 aaatttcgtg ccctcagatc aaaagataac agaaaaaagg gctaaaatac aagatatccc 4500 tcatcatgag gaaaggttac tagattatcg cgaggagaaa tcccgtgatg gccaagataa 4560 acttcccatg gaagttgaac aatctatggc aacagataag aataccaagg tattctcaga 4620 taagattttg atctcagcag atcctgcttc gagcatggtt gctttccaca taaatatcaa 4680 taacctattg caatcttttc cacataataa accatcatca tccacaaaaa ggcatgatac 4740 cattccccaa acaccataca tactgcataa tcatcctaat ttattccttc cacaatatat 4800 actccggacc cagccaaaag caccatgtag atcttgtgcc tacaaagatt cttgcaaaaa 4860 gaaacttaaa agccaaaatc ccatgagtac tacatacgaa aatctccaac ccagattaag 4920 cttcaaaacg gaacaaactt tatcctgctt tgggcaagac atcctcgatc ttgtttggca 4980 aaagtttaag gagagacaaa tgaaaatatt ccttggactc caagattatt tctttgatct 5040 cttagaaggg agagaaagaa acccagccat acgagtaatc atatatatgc tccctctctt 5100 aagactagat gatcaggcaa tttctgaccc atcctataga ttcctggttc tcaaagctga 5160 gataaatctt caaagattcc ggaacctacc cacatacaac catgaagaaa tatctctcca 5220 aaccattata gatcatggtc ttgtgaattc catatatgca accctcgatc agatccttca 5280 atctgattta ggaaacgctg tgaaagatgt atgcaggaga cttggacatg gaagatacag 5340 gattatcttc tcctcaatac caccaaaatt cacaccacct gttcgtccag caattcatta 5400 tatatatatc atgaagggac aatttaattt tcaagaagac ggtcctagca aactatcgga 5460 tgaagaggaa gaaatatata caacagttgc taatcatgaa aattggagat tattttctga 5520 agctgcagaa attgaagaag ctatcaccac agattatgaa tatcagctgg ttttccaaaa 5580 caagatcaca aggattttta tcagcaaatt ctacaaccaa agttatgaat acttcaaggg 5640 agcagggcgc ataattaaac cggattttgg aaatgaatgc tccaagaaaa gttactacag 5700 aagcctggct cagtggtttc agaaaacaga gccatcagag attgacacgg tgcaatcagc 5760 accaatgata atcaacgaag ataatgaata aagatcttgt catccccgac aaagatcact 5820 attcaagata aggaatctac actattccag ataagtatgg atcttggtgg tcatgggcag 5880 ccagatgaat agaattcttt aagctaaata tgtttttcaa tatatattga taatagaata 5940 tcaataatt 5949 // ID RETROFIT_I repbase; DNA; ORY; 4396 BP. XX AC U72726; XX DT 06-NOV-2002 (Rel. 7.1, Created) DT 06-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Rice copia-type LTR retrotransposon RETROFIT_I, internal region. XX KW Copia; LTR Retrotransposon; Transposable Element; KW COPIA superfamily; RETROFIT_I; internal region. XX OS Oryza longistaminata OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-4396 RA Song Y.W., Wang L.G., Chen L.L., Kim S.H., Pi Y.L., Holsten T., RA Gardner J., Wang B., Zhai X.W., Zhu H.L. et al.; RT "A receptor kinase-like protein encoded by the rice disease RT resistance gene, Xa21."; RL Science 270(5243), 1804-1806 (1995). XX RN [2] RP 1-4396 RA Song Y.W., Pi Y.L., Wang L.G., Gardner J., Holsten T. RA and Ronald C.P.; RT "Evolution of the rice Xa21 disease resistance gene family."; RL Plant Cell 9(8), 1279-1287 (1997). XX DR Genbank; U72726; Positions 4436 8831. XX SQ Sequence 4396 BP; 1229 A; 934 C; 1051 G; 1182 T; 0 other; tggtatcaga gcctttttcc acctcaatag atcgcatctt tcatccacat ggcgtcgtcg 60 tcgtcttcct caggcgcggc agccgccaat ctcctccaag gccactcggt ttcagagaaa 120 ctcgggaaag ccaaccatgc attgtggaaa gcgcaagtta gcgctgcagt gcgtggagcc 180 cgattgctgg gctacctcaa cggcgatatc aaagctccag acgccgaact ctcggtcacc 240 atagatggga agaccacaac aaagccgaat ccggcatttg aagattggga ggccaatgac 300 cagcttgttc ttggctatct cctgtcatct ctttcaaggg atgtgctgat ccaagtcgcc 360 acatgcaaga cggcggctga ggcatggcgg agcattgaag cactctactc caccggcact 420 cgagcaaggg cggtgaacac cagactcgcc ctcaccaaca cgaagaaagg aacaatgaag 480 atcgccgagt atgtcgccaa gatgcgagcg cttggtgatg agatggctgc cggcggtcat 540 ccacttgatg aagaagacct tgtccagtac atcatcgctg ggctaaatga agacttcagc 600 ccgatcgtct ccaacctctg caacaagtcc gatcccatca cggttgggga gctgtattct 660 cagctcgtca actttgaaac cctccttgat ctctaccgca gcactggtca gggaggagct 720 gcttttgtcg ctaatcgcgg caggggcggc ggcggcggcg ggcgcggcaa caacaacaac 780 tccggcggcg gcggcggcag aagcgcgccg ggtggacgcg gcagcggcag ccagggtcgc 840 ggtggccgtg gacgcggcac aggaggccaa gacaggcgcc ctacttgcca agtttgtttc 900 aagcgtgggc atacagcagc tgattgttgg tatcgcttcg acgaggacta cgttgcagat 960 gagaagctcg ttgctgctgc tactaactcg tatggtatag atacaaattg gtatattgat 1020 acaggtgcta cagatcacat taccggtgaa ctagagaagc ttaccaccaa ggagaaatac 1080 aacggcggcg agcaaattca cactgctagc ggagcaggta tggatattag tcacattggt 1140 catactattg tgcatacccc tagccgtaat attcatctaa ataatgtcct ttatgttcct 1200 caagccaaga aaaatcttat atctgctagt caattagccg ctgataattc tgcttttctt 1260 gaacttcact cgaaattctt ttctataaag gatcaggtaa cgagggacgt tctgcttgaa 1320 gggaaatgta gacacggtct ctacccgatc cccaagttct ttggtcgctc aaccaacaaa 1380 caagcccttg gtgccgccaa gttatccctg tctaggtggc atagccgtct aggacatccg 1440 tctcttccta ttgttaagca agtcattagc agaaataatc tcccatgttc agttgagtca 1500 gtcaatcagt ctgtgtgtaa tgcttgccaa gaagcaaaga gtcatcagtt accttatatt 1560 agatctacta gtgtgtctca atttcctctt gaacttgttt tttctgatgt ttggggccct 1620 gctccagagt ctgttgggag aaataaatat tatgtgagtt tcattgatga ttttagtaag 1680 tttacttgga tatacttgct gaaatacaag tctgaggttt ttgagaaatt taaagaattt 1740 caggctttag ttgaacgaat gtttgataga aagattattg ccatgcagac tgattggcgg 1800 ggggggagat atcagaaact taattccttt tttgctcaaa taggattgat catcatgtgt 1860 catgtcctca cactcatcag gcagaatggg tcagctgaga gaaaacaccg gcatatcgtg 1920 gaagtaggcc tttctctttt atcttatgca tcaatgcctc ttaagttttg ggatgaagcc 1980 tttgttgcag ccacttatct catcaatcgt atacctagta aaaccatcca aaattctaca 2040 cccctagaga aactgtttaa ccaaaaacct gactactcat ccttgagagt gtttggttgt 2100 gcatgttggc ctcatcttcg cccttacaat acacacaaac tccagtttcg ctccaaacag 2160 tgcgtgtttt tgggttttag tactcaccac aaaggattta agtgtcttga tgtgtcatca 2220 ggccgtgtct acatctcaag agatgttgtc tttgatgaaa atgtttttcc cttctctaca 2280 ctccactcaa atgcaggagc cagactcagg tctgaaattc ttttgttgcc gtcccccttg 2340 acaaactata atacggctag tgcaggggga acacatgtag ttgcaccagt ggctaatact 2400 ccattaccta gtgataattt aatttctaat gctgctgatg tgacttctgg agaaaatagt 2460 gcagcacatg aacaggaaat ggagaatgag caggaaatag agaacgtcat gcatgggaac 2520 gacgtgcatg gggacgcggc atcgggacct gtgctggatc aaccaactgc tgacagcagc 2580 actgcgccgg accagggagc tgacaccagt gacgcggtct ctggcgcagc ttctgacgcg 2640 ggtggagaca ctgccaccct gggagctgga gcagcaaata gcgcagcagc aggtggtgaa 2700 gaatcccagc cggtgcagcc tgatgtgacg ggtacagtac tggctacagt agcccctgca 2760 tcgagaccac acactcgtct gcggagtggt attcgaaaag agaaggtata cactgatggc 2820 accgttaaat atggttgttt ttcttctact ggtgaaccac aaaatgataa agaggcttta 2880 ggagataaaa actggagaga tgcaatggaa actgagtata atgctttgat aaaaaatgac 2940 acatggcacc tagttccata tgagaaagga caaaatatca ttgggtgtaa atgggtatat 3000 aagattaaaa ggaaggcaga tgggacactt gatagataca aagctagact tgtagcaaag 3060 gggtttaaac aaagatatgg tatcgattat gaagatactt ttagtcctgt tgttaaagct 3120 gctactatta gaattattct gtccattgct gtctctagag gttggagtct tagacagtta 3180 gatgttcaga atgcctttct tcatggattc ttagaagaag aagtctacat gcaacaacct 3240 cctgggtttg agtcatcctc taaacctgat tatgtatgta aattggataa ggcattatat 3300 gggctgaaac aagcaccaag ggcgtggtat tccaggctga gtaagaaact tgttgaactt 3360 ggttttgaag cttcaaaggc tgatacctca ttattctttc ttaacaaagg agggatactt 3420 atgtttgttt tggtatatgt tgatgatata attgtagcta gctctacaga gaaggcaact 3480 acagcacttc tgaaggatct aaacaaggag ttcgcactta aggatttggg agacctgcac 3540 tacttccttg gaattgaggt aactaaagtt tccaatggcg ttatcttgac tcaagagaag 3600 tatgcaaatg atctgctaaa gagagttaat atgtcaaatt gcaagccagt tagtactcct 3660 ctttctgtta gtgaaaaatt aactctatat gagggatcac ccttgggtcc taatgatgca 3720 atacaatata gaagtatagt tggtgcttta caatacttga ccttgacaag acctgacata 3780 gcttattcag taaacaaagt ctgtcagttt cttcatgctc ctactaccag tcattggatt 3840 gcagtaaaaa gaatcctcag atacttgaac caatgcacaa gtctaggact tcatatacac 3900 aagagtgctt ctactcttgt tcatgggtat tctgatgcag actgggcagg tagtatagat 3960 gacagaaaat caacaggagg atttgcagta tttttgggtt ctaatcttgt gtcctggagt 4020 gctaggaaac aacctactgt gtcaaggtca agcacagagg cagaatataa ggctgtggca 4080 aatactacag ccgaactgat atgggtacaa accttgttaa aagaattggg aattgagtct 4140 cctaaagctg ccaagatttg gtgtgataac ttaggagcta aatatttatc agctaatcct 4200 gtgtttcatg caaggacaaa gcatatagag gttgattatc attttgtaag agaacgagtg 4260 tcacagaagc tgttagagat tgattttgtt ccatcaggag accaagttgc tgacgggttt 4320 acaaaggcac tgtcagcttg tcttcttgaa aattttaaac acaatcttaa cctagctagg 4380 ttatgattga gagggc 4396 // ID COPIA2-I_OS repbase; DNA; ORY; 4509 BP. XX AC . XX DT 04-APR-2005 (Rel. 10.03, Created) DT 04-APR-2005 (Rel. 10.03, Last updated, Version 1) XX DE O. sativa Copia LTR retrotransposon - internal consensus. XX KW Copia; LTR Retrotransposon; Transposable Element; COPIA2-I_OS; KW Interspersed repeat; reverse transcriptase. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-4 RA Gentles A. and Jurka J.; RT "Rice Gypsy LTR retrotransposon."; RL Repbase Reports 5(3), 47-47 (2005). XX DR [1] (Consensus) XX CC 962 bp LTR is COPIA2-LTR_OS. This copia-type retrotransposon CC appears CC to have been active recently in the rice genome, as there are CC numerous intact copies which are 99% or more similar to the CC consensus. The internal sequence contains a long uninterrupted CC ORF CC that has an integrase domain. The element is flanked in the CC genome CC by 5 bp TSDs. XX SQ Sequence 4509 BP; 1251 A; 836 C; 1151 G; 1268 T; 3 other; atccaaaaac cttattatag gcactgtgat tttactatgg ctggttttgc cgatgcactg 60 aggccggata aattcaccgg tgtgcatttt aagagatggc agatcagggt cactctgtgg 120 ctgacagcta tgaaatgctt ctgggtgagt actggcaaac ctgaaggagt tcttactgct 180 gaacagcaga agcaattcga ggaagccact actctctttg tgggatgcat tcttagcgtt 240 cttggcgatc gtctggtcga ggtgtatatg catatgaccg acgctaagga gttgtgggat 300 gcactgaata ctaaattcgg tgctactgat gctagcaatg atctgtatat catggagcag 360 tttcatgact acaaaatggc tgacaaccgt tctgtagtcg aacaggctca tgagatacaa 420 accatggcta aggaactcga actccttaag tgtgtcttac ccgacaaatt tgtggccggg 480 tgcattattg caaaactacc tccatcttgg aggagtttcg gtactgcact caaacacaag 540 agacaggaat actccgttga ggggttgatt gcgtctcttg atgttgagga gaaagctcgg 600 gaaaaagatg ccgcgtctaa gggcgatggt gggcagtcca gtgccaatgt tgtgcacaag 660 gcccagaaca agagcaaggg gaaatacaaa gctcagcaga ccaccaactt caagaagcag 720 aagaagaaca acaacaatcc taatcaggat gagaggactt gctttgtgtg tggccaagtt 780 ggtcatctgg ctaggaagtg tccacarcgc aaggggatga aggcacctgc agggcagact 840 tctaagtctg ctaatgtgac cattggcaac actggagatg gaagcgggta tggtaattta 900 cctactgttt tttcagttaa tcaatctact aattggtggg ttgatactgg ggccaatgta 960 catgtttgtg ctgacatctc attgttttct tcttatcagg tcgcacgggg ttccaccgtc 1020 ctaatgggga atgggtcaca tgcttctgtt catggtgttg gcacggtaga tctgaagttt 1080 acttcgggaa agatcgtgca gctgaagaac gtgcagcatg tcccttctat cgacaggaat 1140 cttgttagtg gctcccgtct gactagagac ggatttaagt tggtttttga gtctaataaa 1200 gtagtcgtgt ctaaacatgg atattttatt ggtaaaggtt atgagtgcgg aggcctgttc 1260 cgcttttccc tttctgattt ctgcaataag tctgtgaacc atatttgtgg cagtgtggat 1320 gatgaggcta atgtttggca ttcacgttta tgtcatatta attttggctt gatgtctcgg 1380 ctttccagca tgtgtttaat tcctaagttt tccattgtca aaggttctaa gtgccatagt 1440 tgtgtgcaat cgaagcaacc tcgcaagcct cacaaggctg ccgaggagag aaacttggca 1500 ccactagaac tcctacattc agatctttgt gaaatgaatg gggtgttgac gaagggtgga 1560 aaacgatatt tcatgacatt gattgatgat gctactagat tttgctatgt gtacttgttg 1620 aaaacgaaag acgaggctct agactatttt aaaatttata aggcagaagt tgaaaatcaa 1680 cttgacagaa agataaaaag gcttaggtct gatcgtggtg gagagttttt ctcgaacgag 1740 tttgacttat tctgtgagga acatggcatc atacatgaga ggacgcctcc ctattctccc 1800 gagtctaatg ggattgctga aaggaagaac cgcacactga ctgacttggt gaatgccatg 1860 ttggacaccg cgggactgcc taaggcatgg tggggggagg cattgttgac ctcaaatcat 1920 gtgttaaaca gagttcctaa cagaaataag gacaaaacac catatgagat atggattggt 1980 agaaaaccat cactttctta tttgcgcaca tgggggtgct tggcgaaagt caatgtacca 2040 ataacgaaga agcgcaaact tggacctaag actgtggact gtgtttttct gggatatgct 2100 catcatagca ttgcctatag atttttaata gttaaatccg aggtaccgga catgcatgtt 2160 ggtacaatta tggagtctcg tgatgctacc ttctttgaga gctttttccc aatgaaggat 2220 acacatagtg gttcgaacca accctctgaa ataattccca gttcaatcac accaccagaa 2280 caaactgaac atacacatga acttgtctct gaggaggatg tcagtgaagc tcctcgaagg 2340 agtaagagac aaaggacggc taagtctttt ggtgatgatt tcactgtgta cctcgtggat 2400 gacactccta agtcaatttc agaagcatat gcatctcctg atgcagacta ctggaaggag 2460 gctgtccgta gtgaaatgga ttccattatc gctaacggga cttgggaggt gacagagcga 2520 ccctatgggt gtaaacctgt ggggtgcaag tgggtgttca agaagaagct taggcctgac 2580 ggtactattg aaaagtacaa ggctcggctt gttgctaagg gctatactca gaaagaaggc 2640 gaagatttct ttgacactta ctcacctgtt gctagattga ccacaattcg tgtgctactt 2700 tccctagcag cctcacatgg tcttctcgtt catcaaatgg acgttaagac agcttttctt 2760 aatggagagc tggatgagga gatctatatg gatcaacctg atgggtttgt agttgaaggt 2820 caagaaggca aagtgtgcaa attgttgaag tctttgtatg gtctgaaaca agctcctaag 2880 caatggcatg agaaatttga caaaacattg acatctgcag gctttgcagt caatgaggca 2940 gataaatgtg tgtactatcg ccatggtggg ggtgagggag ttattttgtg cttgtatgtt 3000 gacgacatac tgatatttgg gacaaacctt gaggtgataa atgaggttaa atcattcttg 3060 tctcaaaatt ttgatatgaa agatttggga gtagctgatg ttatcttaaa cattaagcta 3120 attagaggtg agaatgggat tacactcttg cagtcccatt atgtggagaa gatcttgaat 3180 cgctttggct acattgatag taagccttct ccaacacctt atgatcctag cttgttgctt 3240 cgcaagaaca agagaattgc taggaatcaa ctggaatact cccaaatcat tggctcgttg 3300 atgtacctgg ctagtgcaac taggcctgat atctcctttg ctgtgagcaa gttgagccga 3360 tttacctcta atccgggaga tgatcactgg cgtgcgcttg agcgagtaat gcgctatctg 3420 aaaggtactg tggaattggg gcttcactat actgggtatc ctgcggtact ggagggttat 3480 agtgattcta actggatctc tgatgtggat gagatcaaag ccactagtgg atatgttttc 3540 acactgggtg gtggtgctgt ttcatggagg tcttgcaaac agacaatttt gacgaggtca 3600 accatggaag cagagctaac ggcactggat actgctactg ttgaggcaga atggctgcgt 3660 gatctattaa tggatctgcc tgttgttgaa aaaccggtgc cggctatcct tatgaactgt 3720 gacaatcaaa cggtaattgt caaagtgaat agttctaagg ataatatgaa atcgtctaga 3780 catgtgaaaa gacgattgaa gtctgtcagg aaattaagaa actccggagt tataacgttg 3840 gattacatcc aaacagcgag aaacctggca gatcccttca cgaagggact atcacgaaat 3900 gtgatagaca atgcatcgaa ggagatgggt ttgagaccca tgtgagttat actatggtgg 3960 taacccagtc tatgtgatcg gagatcccgt gaattagatc ctgggaagaa caaaccatta 4020 ataaactaga ggagagtacc aatatatata ccctctccaa gtgaagatgc atatactctc 4080 gtgagctgca aggcaggttg gctatgcctt aatgagttct gttggcttta attagcraag 4140 atgttgtcct gcagagcatt cttgaargaa ctcacctttg tgagcttgac tgttggtcgc 4200 agtctatgaa gattttgggt gaatcttcta ggaagcttac taaagaccta ggagtatgac 4260 ttatacgctc cacccgaggg gtagtctaca gacggtctag taccagataa gactttgagt 4320 gaaacttgct tgcacaagac ttgcaattca aggcgtagtc cattgttcaa gttgtgagta 4380 agtgtagctt ggagttctag gtggatgttc aaccttaatt ggtctccatc gaaccgctgg 4440 tatataaaca gtacattgga aaaggcaaat ctcagtggga ttttgagatt tggtggggga 4500 ttgttggaa 4509 // ID RCH3SAT_OS repbase; DNA; ORY; 1341 BP. XX AC AF058905; XX DT 17-NOV-2004 (Rel. 9.1, Created) DT 17-NOV-2004 (Rel. 9.1, Last updated, Version 1) XX DE Oryza sativa subsp. indica dispersed centromeric repeat family DE RCH3. XX KW SAT; Satellite; Simple Repeat; Nonautonomous; KW Cenromeric satellite; complex repeats; RCH3SAT_OS. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-1341 RA Dong F., Miller T.J., Jackson A.S., Wang L.G., Ronald C.P. RA and Jiang J.; RT "Rice (Oryza sativa) centromeric regions consist of complex RT DNA."; RL Proc. Natl. Acad. Sci. U.S.A 95(14), 8135-8140 (1998). XX DR Genbank; AF058905; Positions 1 1341. XX SQ Sequence 1341 BP; 352 A; 285 C; 358 G; 345 T; 1 other; aagcttgtcg cccgcggcca ctttagnctt gctgctcttg tgacgcattt tgatgctctc 60 aatgctggag gcaatggtgg gggtaatgat gatgacattg acggagagta cgtcgaggat 120 aatttggagg atgaatatat tgctgacact gaacaagatg atcgagatgc tcgagatcgt 180 cgacggctac acaacaatcg acgaggtatg ggtggtcgcc gccgacgcga ggtacgcaac 240 aatgatgatg ctttttctaa aattaaattt aagattcctc cttttgatgg aaaatatgat 300 cctgatgcgt acctctcttg ggagattgct gttgaccaaa aatttgcatg ccatgagttt 360 cctgagagca ctagagttag agctgctacg agtgagttca ccgattttgc tttggtttgg 420 tggatagaac atggcaagaa aaatcctaat aacatgccac aaacttggga tgctttgaaa 480 cgggtcatgc gggctagatt tgttccttct tactatgcac gcgacttgct gaataggttg 540 caacaattga gacagggtgc gaaaagtgta gaggaatatt atcaggagtt acaaatgggc 600 ttgcttcgtt gtaatttaga ggaaactgag gacgctgcca tggctagatt tttgggtggg 660 ttaaaccgcg agatttatga catcgtagac tataaagatt acgctaatat gacccgattg 720 tttcatcttg cttgtaaggc tgaaagggaa gtgcaaggac gacgtgctag tgccaaggct 780 aatttttctg caggtaaaac ttcatcatgg cagacacgca ccactcctcc ggccggccgt 840 actgcttctc catcttccac acccacaacc agtcgagcag cacctcctcc atctagtgac 900 aagtcagcga caaaggctgc tcagccagca ccgagtgctt cttcaatggc atccacaggc 960 cgaatgagag atgttcagtg ccaccgttgc aagggctttg ggcatgtgca gcgtgactgc 1020 cctagcaagc gagttttggt agtcaaaaac gatggtgagt actcctctgc tagtgatttc 1080 gatgatgata cacttgcttt gcttgcggct gaccatgcag ataatgagcc accggaagag 1140 cacattgggg ctgcatttgc ggatcactat gagagcctca ttgtgcagcg tgtccttagc 1200 gcacaaatgg agaaggcgga gcaaaatcag cgacacacgt tgttccaaac aaagtgtgtc 1260 gtcaaagagc gttgttgccg catgatcatt gatggaggta gctgcaacaa cttggctagc 1320 agcgagatgg tggagaagct t 1341 // ID RIRE5-I_OS repbase; DNA; ORY; 4471 BP. XX AC AB105803; AB105803.1; GI:29027728; VERSION; XX DT 11-JUL-2003 (Rel. 8.06, Created) DT 26-MAY-2005 (Rel. 8.06, Last updated, Version 2) XX DE Oryza sativa retrotransposon RIRE5: internal sequence. XX KW Copia; LTR Retrotransposon; Transposable Element; ORF; RIRE5; KW RIRE5-I_OS; RIRE5-LTR_OS; internal sequence. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-4471 RA Ohtsubo H. and Ohtsubo E.; RT "RIRE5-I_OS."; RL Direct Submission to Repbase Update (13-MAR-2003)Hisako Ohtsubo, RL Institute of Molecular and Cellular Biosciences, The University RL of Tokyo, Section of Chromosome dynamics; Yayoi 1-1-1, Bunkyo-ku, RL Toukyo 1130032, Japan (E-mail:hohtsubo@ims.u-tokyo.ac.jp, RL Tel:81-3-5841-7854, Fax:81-3-5841-8484). XX RN [2] RP 1-4471 RA Jurka J.; RT "Consensus sequence of RIRE5 LTR-retrotransposon."; RL Direct Submission to Repbase Update (26-MAY-2005). XX DR [2] (Consensus) XX FH Key Location/Qualifiers FT CDS 1..3927 FT /product="RIRE5-I_OS_1p" FT /translation="TIQKPDRSFSVVGFAAALKPHAFDGSNYKRWKARALL FT WLTAMQCFYVSRGKRSEPPLSPEEEAKFEASDCLFRGALISVLADNIVDVY FT MHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQ FT MLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIG FT SLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAAT FT NFKKKGKGKAKGDCFVCGKSGHWAKDCPERKDRKSANMIISEGGGTSGYGK FT ILPTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSLAA FT VHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNK FT CVVSKYGTFVGKGYDSGGLFRFSLNDMCNNHNAVNHISENDESNVWHSRLC FT HVNFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPL FT ELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKIY FT KAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNG FT VAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPF FT EEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGY FT RFLIVNSGVPDMHAGTIFESRDATFFENEFPMKYTPSTSSKETVMPHEHFA FT PIEHNDQTPEENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEE FT AYSSPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRP FT DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLV FT HQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQ FT WHEKFDTTLTSAGFVVNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNV FT IEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYVDKVLSRF FT GYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISF FT AVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSN FT WISDADEIKATSGYVFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVE FT AEWLRELLMDLPVVEKPVPAILMNCDNQTVIIKVNSSKDNMKSSRHIKRRL FT KSVRKQKNSGVIALDYVQTARNLADQFTKGLPRNVIDSASREMGLIPT" XX SQ Sequence 4471 BP; 1294 A; 856 C; 1144 G; 1177 T; 0 other; acaatccaaa aacctgatag gtcattttcg gtagttggct ttgctgctgc actgaaacca 60 catgcttttg atggttcaaa ctataagaga tggaaagcac gtgcactatt gtggttgaca 120 gcgatgcagt gcttctatgt ttcacggggc aaacgaagtg aaccacctct ttctcctgag 180 gaagaggcta agttcgaggc ttcggattgc ctgttccgtg gagcattgat cagtgtactc 240 gctgacaaca tagtggacgt gtacatgcac atgccttctg ggaaggacat gtgggatgca 300 cttgaggcca agttcggagt ttctgacgcc ggcagtgagc tgtatgtcat ggagcagttc 360 tatgactaca agatggtcga tgaccgttct gtagtagaac aagctcatga gattcagatg 420 ctggctaagg aacttgagaa caacaactgt gagttgccgg acaagtttgt ggcgggtggc 480 attattgcca aactaccacc ttcttggtcg gactttgcca cttctctaaa gcacaagaga 540 caagagttca gtgttcctga tctcattggc tctttgggtg ttgaggagaa ggcgagggca 600 aaggacgtcc ggggcaaaaa ggttgaggga ggttctagtg ccaatatggt acagaagaag 660 aaccctcatg catcccacaa caacaagaaa gtcaagcctg atgtcaaacc caaggctgca 720 accaatttta agaagaaagg caagggaaag gcaaagggag actgctttgt gtgtggcaag 780 tctgggcatt gggccaagga ctgtcctgag cgcaaagaca ggaagtctgc caacatgatc 840 attagcgagg gcggaggaac atcggggtac ggtaaaatat tacctacagt tctctctgtt 900 tttcattcac ctgattggtg ggtggatact ggtgctaata ttcatgtatg tgctgacatt 960 tctctgtttt cttcttatca ggtcgggaga ggttcctcct tgttgatggg aaacgggtcg 1020 cttgcggctg ttcatggtgt tggtacggtc gatctgaagt ttacttcggg aaagaccgtg 1080 cagctgaaga acgtgcagca tgtcccttca ataaagaaga atctagttag cggctctcta 1140 ttgtgtagag aaggttttag acttgtgttt gagtccaata aatgtgtcgt atctaaatat 1200 gggacttttg ttggaaaagg ttatgacagc ggaggcttgt tccgcttttc tttgaatgac 1260 atgtgtaata atcataatgc tgtgaaccat attagcgaga atgatgagtc taatgtgtgg 1320 cattcgcgac tctgtcatgt gaatttcggt tgtatgacgc gcttagctaa catgagttta 1380 attccaaaat tcactttggt caaaggttcc aagtgccata cttgtgttca atcgaaacaa 1440 cctcgcaagc ctcacaaggc atctgaggcg aggaatttgg cacctctaga acttgttcat 1500 tccgatttgt gcgaaatgaa cggcgtgttg actaaagggg gaaagaaata tttcatgaca 1560 ctgatagatg attgcactag attttgctat gtgtatctat tgaaaacaaa ggatgaggca 1620 ttgcattact ttaaaatcta taaagctgag gtagaaaacc aacttgaaag gaaaatcaaa 1680 cggttgaggt ctgatagagg tggggagtat ttttccaatg agtttgcatc cttttgcgaa 1740 gagtttggaa ttattcatga gatgacgcct ccctattcac cccaatcaaa tggggtggcc 1800 gaaagaaaga accgtactct aactgagatg gtgaatgcca tgttagacac tgcggggctt 1860 tccaaggaat ggtggggtga ggcagttttg actgcgtgtc atgtcctgaa taaaattcca 1920 atgaagcata aggaagtaac accattcgag gaatgggaaa ggaagaaatt aaatctctca 1980 tacctacgaa catggggctg tttggccaag gtaaatgtac ctatagccaa aaagcggaaa 2040 cttggaccaa aaactgttga ttgtgtgttt cttggttatg ctatccacag tgtgggttat 2100 agattcttaa tagtaaactc tggagtaccc gacatgcatg ctggtacaat ttttgagtcc 2160 agagatgcta cattctttga gaatgaattt cctatgaaat atacacctag cacttctagt 2220 aaagaaactg tcatgcccca tgagcacttt gcaccgatag aacacaatga tcaaacgcct 2280 gaggaaaatc ctgaggagga caacattgta gatactcgca agagtaagag acaaagggtt 2340 gcaaaatcct ttggagatga ctacattgta tacctcgtgg atgacacccc aagaaccata 2400 gaagaggcat attcatctcc tgacgctgac tactggaagg aagcagtacg cagtgaaatg 2460 gactcgatta tgtctaatgg tacttgggaa gtcgttgagc gtccatatgg gtgcaagccc 2520 gtaggatgca aatgggtttt caagaaaaag cttaggcctg atggtacaat cgaaaagtac 2580 aaggcaaggc ttgtggccaa gggttatacc caaaaggaag gcgaggactt cttcgacaca 2640 tactcaccag ttgctcgctt gaccacgatt cgagtactac ttgctctggc agcctctcat 2700 ggtcttctcg tccatcagat ggacgttaag acagctttcc taaacggaga gctggaggag 2760 gagatctata tggatcaacc agacgggtat gtactagaag gtcaggaggg aatggtgtgt 2820 aaactattga aatccttgta tggcctcaag caagcaccta agcaatggca tgagaagttt 2880 gacaccacgc ttacatctgc aggctttgtt gtgaacgaag ctgacaaatg tgtatactat 2940 cgctatggtg ggggagaagg ggtgatcttg tgcttatatg tcgatgacat actgatcttt 3000 gggaccagcc ttaatgtgat tgaggaggtc aaagactatc tgtccaagag ttttgaaatg 3060 aaggatttgg gagaggctga tgttattctt aacatcaaac tacaaagagg agatgagggt 3120 gggattacac ttgtgcaatc ccactatgtg gacaaggttt tgagtcgctt tggatatagt 3180 gactgcaagc cagctcctac tccttatgat cccagcgtgc tattaaggaa aaaccgaaga 3240 atagcaaggg atcaactgag atactctcaa atcattggtt cattgatgta cttggctagc 3300 gcaacgaggc ctgacatctc atttgctgta agcaagctga gccggtttgt ctcaaatccg 3360 ggagatgatc attggcaggc tctggaaaga gtaatgcgct atctaaaggg cactatgagc 3420 tatggaattc actataccgg gtatccaaaa gtactagaag ggtatagtga ctcaaactgg 3480 atatctgatg ctgatgagat aaaagccaca agtggatatg tgttcacact tggaggtggc 3540 gctgtttcct ggaagtcttg caagcagacc atcttaacga ggtcaacaat ggaagcagaa 3600 cttacagcac tagatactgc gacagttgag gccgagtggc ttcgtgaact cctgatggat 3660 ttgccggtgg ttgaaaaacc agtgccagct atcctaatga actgcgataa tcaaacagtg 3720 attattaaag tgaacagttc aaaggacaac atgaagtcat ctagacacat caagagaaga 3780 ctgaaatctg tcagaaagca gaaaaactcc ggagtgatag cattggacta tgtccaaacg 3840 gctagaaatc tggcagatca gtttaccaag gggctaccac gtaatgtgat agacagtgca 3900 tcgagggaaa tgggcttgat acccacctaa ggttgcataa tagtggaaac ctgtccattg 3960 tgatcggaga tcccgtgaat ttggatggtg aaacaaacta ttgtgtgact gagagaagag 4020 acccttgaaa agggctcatt ttcatgatgt gcttctcttc tttcctgcat ggtaggatgg 4080 cttatgtctt aatgtgatcc gagtggcttt tccaagcaga gatgttgacc tgcagaacat 4140 ctcagaagga acacacctat atgagttcga ctgctagtca cagtctatga ggtttgggcg 4200 atctctagat actcatgaaa ggcctggagt ttgacttata tgctccaaac agaggggatg 4260 cgaacggcag cccagtacca gtcaaggttc tgagtgaaac ctgatcacac aaaacttaca 4320 attcaaggca tagtccattg ttcagttgtg gtctgatgta gctcatttcc taggtggaag 4380 ttcaacttaa cagtctccac caaaaccctg gtatatcaaa caggcacaac attgagaaca 4440 tttcttatga gccttgaaat ttggtgggga t 4471 // ID rn_179-105_IR repbase; DNA; ORY; 4421 BP. XX AC . XX DT 02-NOV-2006 (Rel. 11.1, Created) DT 13-NOV-2006 (Rel. 11.1, Last updated, Version 1) XX DE Internal portion of LTR element from rice. XX KW LTR Retrotransposon; Transposable Element; Interspersed repeat; KW rn_179-105_IR. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-4421 RA Chaparro C., Guyot R., Zuccolo A., Piegu B. and Panaud O.; RT "RetrOryza: a database of the rice LTR-retrotransposons."; RL Nucleic Acids Res 35(Database iss), D66-D70 (2007). XX DR [1] (Consensus) XX FH Key Location/Qualifiers FT CDS 249..2765 FT /product="rn_179-105_IR_1p" FT /translation="RNPSTTQPIHSGLRMINKYSGIYSRRFREKFWCKSHI FT LRVPDKSGLQFNEMFSSQSKARIIQIRAQLARELKGDSSAAAYFTKMKGLA FT DEMAAAGKKLDDDDIVSYILGGLDADYNPLVASVSSKDYISLSDLYAQLLS FT FEAHLNNQSEGGYHSSANSASRGGRGRGQGRGRGRGGFGSNFGSGFGGRGR FT GGRGRGDGSRPSCQLCGKEGHTVHTCWKRFDRSFSGNDVIFQQHHQQAKSA FT SAVSSYGVDTNWYLDTAATDHITGELKKLTTKERYHGNEQVHAANSAGMSI FT SHIGRTIFHTPNRNLALNNVLYIPKAKKNLVSAHRLAYDNHAFVEIHPKFF FT CVKDQTTKSTLLQGRSRGGLYPIPLKSTTPQGRQALVSTSSAESRWHSRLG FT HPSFSVVSRVLRKHNIPVSESREERVCDACQQAKSHQLPYSRSVSRSSAPL FT ELVFSDVWGPAPQSVGRFKYYVSFIDDYSKFTWIYLLKNKSEVFQVFTNFQ FT HLVERQLGRKILTMQTDWGGEYHRLNSFFQKIGIAHHISCPHTHQQNGSAE FT RKHRHIVEVGLALLAHASMPLKFWDEAFLTATYLINRIPSRVINFSTPLEL FT LFHTKPDYSFLRVFGCACWPNLRPYNKRKLQFRSKKCAFLGYSFHHKGYKC FT LDISTGRVYISRDVIFDETVFPFVDLHSNAGNQLRAEISLLPESLLSSRGM FT INSFSFETNAPNNASSAGLYVQDSGDDNLDQNSGGLSGIGPASSAHMPEVS FT GIGLFRCLGVTASVACFGMFTSITKLCSPGVTRVWCGRFRFVSLRRDCPFL FT VVRCLDLLRTLSLESVCGFWTFYGCSKVNNRTFSLLW" XX SQ Sequence 4421 BP; 1149 A; 847 C; 1047 G; 1378 T; 0 other; tggtatcaga gcatcctctt ccacaaaaca tctagtcatg gcatcaagtt cttcgtcgac 60 tttgtcttca tcggcagtgc taggacatcc cgtctctgaa aagctgtcca gagacaactt 120 cctggtttgg agagcgcagg ttttgccggc cgtgcgtgga gcacagctta ctggatatct 180 tgatggcaca aaagaggtgc catcacctga gatcacggtg gagaaaaagg tgggcgacga 240 tttggtgaag gaatccgtca acaacccagc ctattcacag tggattgcgc atgatcaaca 300 agtactcggg tatttactct cgacgctttc gcgagaagtt ctggtgcaag tcgcacatct 360 tgagagtgcc agacaagtct ggactgcaat ttaacgagat gttttcctcg caatctaagg 420 cgcgaattat tcagattcgt gcgcaattgg ctcgagaatt gaagggagat tcatcggctg 480 ctgcatactt cactaagatg aagggattag cagatgagat ggctgcagct gggaagaaac 540 ttgatgatga tgatattgtt tcatatattc ttggaggact tgacgcagat tataatcctc 600 tggttgcctc agtctcctcc aaggactaca tatcactcag tgatctatat gcccagctac 660 tctcgtttga ggcacatcta aataatcaat ctgaaggagg ctatcactcg tcggctaaca 720 gcgcgtcacg aggaggacgt ggacgaggac aaggtcgagg ccgtggacga ggtggttttg 780 gcagcaattt cggtagtggt tttggtggca gaggccgtgg tggccgtggc cgtggagatg 840 gttctcgacc ttcctgtcaa ttgtgtggga aggaaggtca cacagtgcat acatgctgga 900 agcgttttga tcgatcgttc tctggaaacg atgtaatctt tcagcagcac catcagcaag 960 caaagtcggc atcagccgta tcttcttatg gggtagatac aaattggtat ttggatactg 1020 ccgctacaga tcatattact ggggagctta agaaacttac gacaaaggaa aggtatcatg 1080 gtaatgagca agttcatgct gcaaatagcg caggtatgag tataagtcac ataggaagga 1140 ctatttttca tacccctaat cgaaatctcg ctcttaataa tgttctttat attcctaagg 1200 ctaaaaagaa tttagtttca gctcatcgtc ttgcttatga taatcatgcc tttgttgaaa 1260 ttcatcctaa attcttttgt gttaaggatc aaacaacgaa gagcactctt cttcaaggta 1320 gatcccgggg tggtctgtat ccaattcctt tgaagtctac tacacctcag ggacgtcaag 1380 ctcttgtttc tactagttct gcagagtcta ggtggcatag tcgtcttggt cacccttctt 1440 tttcggttgt gagtagagtt cttagaaaac ataatatccc tgttagtgag tcgagggaag 1500 agcgagtttg tgatgcttgt cagcaagcta agagtcatca actaccttat tctaggtcag 1560 tcagtcggtc gtctgctcct ttggagcttg tcttttcaga tgtttggggt cctgctcctc 1620 agtccgtggg gagattcaaa tattatgtaa gctttattga tgattatagt aaatttactt 1680 ggatatatct tttaaagaac aagtccgaag ttttccaagt ttttactaat ttccagcatc 1740 ttgttgaaag acaacttggt aggaaaattc ttacaatgca gactgactgg ggtggtgaat 1800 atcatcgtct aaactctttc ttccagaaaa tagggatagc acatcatatc tcttgtcctc 1860 atacacatca acaaaacggc tctgcagaac gcaaacatcg ccatattgtt gaagtaggat 1920 tagctctcct tgctcatgct tcgatgcctc tcaaattttg ggatgaggcc tttctcacag 1980 ctacctattt gatcaaccgt atacctagtc gagttattaa cttttctacc cctttggagc 2040 ttttgtttca tactaagcct gactattcct ttcttcgagt tttcggttgt gcttgttggc 2100 caaatcttcg tccttataac aaacgtaagc tccaatttcg ttcaaaaaag tgtgctttcc 2160 ttgggtatag ttttcatcac aaagggtata agtgtctaga tatttccaca ggccgggtct 2220 atatatctag agatgttata tttgacgaaa ctgtttttcc ctttgttgat cttcattcca 2280 atgctggaaa ccaacttcga gctgaaattt ctcttcttcc agaatctttg ttatcatcaa 2340 ggggtatgat taatagtttt tcttttgaga ctaatgctcc taacaatgct tctagtgctg 2400 gcctgtacgt acaggattct ggtgatgata atctggatca aaatagtggt ggtttatctg 2460 gcattggtcc agcttcttct gctcatatgc cagaagtatc tggcattggt cttttcagat 2520 gtttgggcgt caccgcaagt gtcgcatgtt tcggtatgtt cacctccatc accaaactgt 2580 gttctcctgg ggtcacacgt gtgtggtgcg gcaggttccg gttcgtgagt ctacgccggg 2640 attgtccgtt tctggtggtg agatgtctgg atctactgag gactttatct cttgaatctg 2700 tctgcggatt ctggaccttc tatggctgca gcaaggtgaa caacagaaca ttcagcctgt 2760 tgtggtgatc ccggcctgca tactcgtgct tcaaagtaat attcgtaagc cacttactcg 2820 tacagatgga acgattagat ggggtatgta tagtggttct gacaaggaac ctacttgttt 2880 cgatgatgct ctagctgatg aaaattggaa gaaggccatg gatgaggaat ataatgcact 2940 gattcaaaat aatacttggc atttagtgcc tgcaccgata ggaaaaaata ttattgatgt 3000 gcaagtgggt gtttaagatc aagcgaaaat ctgatggtac aattgatcgg tataaagctc 3060 ggttggtggc gaaaggattt aagcagaggt atggcattga ttacgaggat acttttagtc 3120 ctgttgttaa gatctctact attcgtctcg ttctgtctct tgcggtctcc aaaggttgga 3180 gtatacgtca actagatgtc aagaatgcgt ttcttcatgg cattttggaa gaggaagtat 3240 atatgaagca accgcctggg tacgttgata agtcttcttc atattatgtg tggcaagtta 3300 gtcagagcat tatttggttt gagacagggt ccagtgagag caatggtatt atcgtctcta 3360 tgacaaatta tgccaacttg ggttcagtgc ttccaaggca gacacttcat tgtttttcta 3420 taggaaaggt gatgtggtta tatacttctt ggtctacgtg gatgatatca ttgtggttag 3480 ctcaagtgat caagctattc ctgctttact taaagatctt aatgctgagt ttgcacttaa 3540 ggatcttggt aatttacatt acttcttgtg tatagaagta acgccgtcat ctgaaggaag 3600 tttggtgctg tcacaaagga aatatgcaac tgagttgatc agtagagctg ggttaaggaa 3660 ttgcaaaccg gtaagtactc cacttgctgt ttcggaaaag ttttcatcgg taggtggagt 3720 actgttgagt gaagaagatg gtacaaagta taggagtatt gttggtgggt tacaatattt 3780 aacgttaact cgtcctgaca tagcctttgc ggtgaataaa gcatgtcaat atttacactc 3840 accaacaact ttgcactgga cggcggtaaa gagagttttg agatatgtta gtggcacttt 3900 gacatttggt ctaaaaattg gaagatcaga ctccactact attagtgcgt tctcagatgc 3960 agattgggca ggatgttcag atgatagacg ttcaactggt ggttttgcta ttttccttgg 4020 tttcaattta atatcatgga gtgcaagaaa acaagctaca gtttcccgct ctagcacaga 4080 agcagagtac aaggcattag ctaatgctac tgctgaagtc atttggattc aaaccttgct 4140 taaggaactt ggagtatcac aaccaaaggc tgcagtactt tggtgtgaca atattggtgc 4200 aacttatctc tctgctaacc ctgtgtttca tgccagaact aaacacatcg aagtagatta 4260 tcattttgtt agagaacggg ttgtgcaacg gttgttggat atccggttta tatcttctgg 4320 tgatcaatta gcagatggtt tcactaaggc acaatctcta agcaagttgc gaattttcag 4380 gaacaatctt aacttgtgcg aagttatgat tgaggggggg t 4421 // ID CACTA-B repbase; DNA; ORY; 1103 BP. XX AC AF172282; XX DT 09-SEP-2002 (Rel. 7.08, Created) DT 09-SEP-2002 (Rel. 7.08, Last updated, Version 1) XX DE Rice cacta-like non-autonomous DNA transposon CACTA-B. XX KW DNA transposon; Transposable Element; Nonautonomous; CACTA-B. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RA Tarchini R., Biddle P., Wineland R., Tingey S. and Rafalski A.; RT "The complete sequence of 340 kb of DNA around the rice Adh1-adh2 RT region reveals interrupted colinearity with maize chromosome 4."; RL Plant Cell 12(3), 381-391 (2000). XX DR Genbank; AF172282; Positions 258636 259738. XX SQ Sequence 1103 BP; 277 A; 237 C; 256 G; 333 T; 0 other; taccactggt ggagaaacca tctttggtcg gtcgacccaa atccacaata gtcccggttc 60 cattaaaaac cgggactaaa aacgatttgt agtcccagtt tataagcgta acaggactag 120 atgatcttta ttcccggttg gggttaccaa ccgggactaa agatcatctt taatcccggt 180 tgtctatatg tcagaccatg tcaggcggct aggatcacca accgggacta aagatctaac 240 tttattcccg gttggagtta ctaaccggga ataaaaatca acacgtacta tataatccct 300 attacttatc ctcttttccc gtccacgcaa tgaactcttt ctctctcttt tttcctctct 360 aactccctat ccttatcctt tcttcttcct tcttccttag ttcttcttct tccttagccc 420 gcttggatcg gagcgagaga ggccagccgc ttggagcaag agcgggccgg gcggtggccg 480 gcggccggtg cggcggcgcg gagggatagg cggcggtggc cggccggctg gcgtggaggc 540 taggcggcag cggccggcag gctcctctgt tgtttttttt ttcttttaag aatttgtgat 600 ttattgcagc aacatatgat gaatttgatt tgtgtctgat gtgaatttgt gatgtatttg 660 tgatgaattt tatagaaact tgtgatgtaa tttgatttgt gtgtaatttt ttttaggatt 720 tgtgatgtaa ttttttagaa ctttaaaatt tgtaatgtgg acttgggatc ttacttcgat 780 ttgggatatg cataccaccc atattgggga gaaaataaaa aaagatatgc ataccaccca 840 gattcgggag aaaataaaaa aggaaaaaaa aacctggcta tcctatttag tcccggttgg 900 taataacaac cgggactaaa gataccctat ctttagtccc ggttggtgtt accaaccgag 960 actaaatatc catctttagt cccggttatt tcaaccggga ctaaagatgg gcatctttag 1020 tcccggattg ctactcccgg ttggaaaccc ggggctaaag gggttcccaa cagggagtaa 1080 aaagggtttc tctaccagtg tac 1103 // ID GYPSY-B repbase; DNA; ORY; 7067 BP. XX AC AF172282; XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE Rice gypsy-type retrotransposon GYPSY-B. XX KW LTR retrotransposon; GYPSY superfamily; GYPSY-B. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-7067 RA Tarchini R., Biddle P., Wineland R., Tingey S. and Rafalski A.; RT "The complete sequence of 340 kb of DNA around the rice Adh1-adh2 RT region reveals interrupted colinearity with maize chromosome 4."; RL Plant Cell 12(3), 381-391 (2000). XX DR Genbank; AF172282; Positions 173805 180871. XX SQ Sequence 7067 BP; 1993 A; 1371 C; 1627 G; 2076 T; 0 other; tgtttacacc caaatttggc acctatggac gaaatagcga aaaattgcca aagtttggaa 60 agtgccgggt ttccttcaca gggccggtca gaccacaggt atgtgggcgg tctgaccggc 120 tagtagggcc ggtctgaccg caggtatgta ggcggtcaga ccgtcagggt tcgagtccga 180 atctgttttc gtcgggtctc gggtttcctt gctcgggaag gcatgtttcg tgtttccatt 240 ggtttctatc ccgaattgga cgtggaggag ggcctgtaga gggcaagacc aacccctata 300 taagggacaa ggccggttca ttgtaaaacc accgaataca atctacttga atcgttcttt 360 tactatgttt tctattttac cctagtttag tccatctttg tcggtttgcg ccgtaaaccg 420 ttcgccgccg ctgcgagagt gcgacacttc tttgtaggtt tgtcctggaa accttccgtt 480 ttgcccacga tacgggtagt tatcatcata tcgatctaaa tcggcgtaga tgctgatttt 540 gatctctaaa tcggctccgc tagccggttt agttgttttt ctacaaaacc catcttgatt 600 tggtcgcttg gctagatcga ggtggttggc gactccatat caccacaagg cgtttaggtg 660 ttacgatcgt gtttgtcgac ttgtcacgaa aagttgccaa cacgattttt ggtgactccg 720 ctggggattt tatctattcg gctatattac ggccgaattt ggtttactcc agtcgtttcg 780 tcgaatcagt ttcggccaaa cggctgaaat tagtctgcac tttaattgct attgccgctg 840 cattggtttt attaccagat taatctattc ggcggtgaag ttatttggac gtccctgaat 900 ccatctgagt actcgccatc cagtacgccg tgtgtaccga ggatcatcat caggaggcaa 960 cagccggttc ggtaacctcg tttccttttg tttcacacgg cgacagagaa aagatcaggc 1020 tattagagcc gatctaccgg gagacaagca gcaggagctt tgcttctttt tattactgtg 1080 cacgtgttaa aaaaaagatc aggctatcaa gccgatctat tactgttcgc ataaagaaaa 1140 aatcaaagcc gattcaattt gcatcggcta tcaccaggaa gtttcagttt ttgtaaattt 1200 gctacataca cacagtaaca taccgacaga aatcaagacc gtatattaat ctattcggtc 1260 aaatatttcg gctatgagct atatggccgt atttaatcaa ggaatttctt catcaactat 1320 gacgagcggg aacgggttca acaatattgc tacacaatac attaggaccg atcaaggcgt 1380 catgagagga aacgtcccgc tacctcaagt tgtaatttca ccaaaggtaa ccttcgattc 1440 gcccaacccg tcctttgcta ttcaaaatgt taataatcat tgtgtagatg catatgctac 1500 ttctagtttt gctcctatac aatatgctta taatactatg ggagggtcaa cgggtgttta 1560 tacggctgat tacacgggaa tcggctatat gcaaaaccta gctaacggta tgaccggtcg 1620 tgacaccggt ctaaccgcac cctatgccgg tcagatcatg cctaccatag ccggtcagac 1680 tgtgccctat cttggccaga tcgcgcctcc tgtggccggt ctgaccgcac cactgaccac 1740 cggtcagacc gggccatggg ccggtcagac cggttctctg ggagtttctt caggttttca 1800 taccacgact agcagtactg attttaatta ttattcatca cctgttaata ctgttagtca 1860 tgctactcta catatctcta atgcttacaa tgatcctaat agaggatatt ctcatgacac 1920 taggtatggc caatataatt atattgcgct gcaacaacca ccccttcaaa tacaccacca 1980 aatcaacaaa ggcctgaaac tatggaggat tggattggag atattattag ggaaagtttt 2040 agaaaaaatg atcttagtaa tttgacatcg gttaggcaaa aatacaatga acctgtcatt 2100 gattatatca agagatttag agatgttaga aaccgatgtt atagcttgaa aataactgac 2160 aaagatttgg ccaacattgc atatgatgga ttgcttgatt ctattaaaga gagattgaat 2220 ggccagatat ttcttgatgt tgatcatgtg ttgcatgaag ctctggctca ggaaagccga 2280 gtggatgaca atagtttaaa tgccacctta gatgatagtg caatatcatg tatagccgaa 2340 ccaaacgatg gttcggattg tggtaataat ttgtgcaatg atgtcgtaac gagtatagcc 2400 gaaccaaatg ttgatttgga ttgtcttact agtttggatg ataacgcaat aaccaatata 2460 gccgaaccaa gtgttggttc ggattgtgtt actagtttag acaatgatgg aatagtcgaa 2520 ccaagtaatg gttcggattg tgttactagc ttagagaata atgccattga agatatagcc 2580 gaactaaatg acagttcgga ttgtatcaca agcgaaagtg aaatagcatt gtcacctaag 2640 accgagtcac aaatcggtca tgtggatgtt ggaaaagatg atgacaatgt cttgcgggat 2700 agtagtgaaa tagaatccaa agtagccatg catatatatt aaaggccgta tcctgaacat 2760 gtagattcgg ttccataccc gcaaggattt gaagtgccca acttcacgaa attcacaggt 2820 gaggatgcta taacaacaat ggaacatatc ggccaattta ttgaacaatg tggtaaagcc 2880 ggtagtgatg atttgcttaa gttgaagttg tttccccttt ccttgtcaaa ctttgcatct 2940 acatgtatag tttacttgct cctagttcaa tttctacatg gtcacgaatg gagcatgagt 3000 ttcatgatta tttcaaagat gcaagcttga tggagcaaag accgattgat acttcatcgg 3060 tcacttatga aactatttcg gttacaccta tgcctaagac cggaattgtt agtaattctc 3120 tccctactag ttctattgat gtcgataaaa agaaagggaa aagtgttatt attggagatc 3180 ctcggcccaa gaataggatc aaaaatgtga aggccgaaga ttataaagtt gcaaaggatg 3240 agtcatctag tttccaaagg gccaaaaagc cgaagctcac ttttgagatg cttatggcta 3300 agtacaagaa aggattagcc ggtcaacgat ttgataatca aactagtgat tcaaaaagac 3360 caagatcatc tcgtaggaag agatttggtc aaacaccaaa gcaatcggag ccatcaacta 3420 tactaactcc atataaaccc ctggttgtga tgccatagta tccatatcca atgtcactat 3480 atggttatcc ttttatgtat tacatgccgt cgatgcctca accacctatg ccgtatcatc 3540 aagaatggaa gcaattacct aggacaatac caagtcattt taactcaaga caagaccgtt 3600 tcccacaaaa gaatcggtct ggtggatcaa aagtgaaaaa ggtgaagaag gtgtgggaga 3660 ggaaagaagc caaagctccg aaggtcgtta ctattaagga gtctcaagat gttcaagtac 3720 ctactggaga tgcggcgaaa actatacaag cggagaagac tgaagctgac gccattactg 3780 tcaacatcgg cggcctgacc aaaacagctg gccggtctaa ccgtcagaca acagccggtc 3840 tgaccgaccc tcctggacga tctgaccgac ggcttgcagc cggtctgacc aggcccagag 3900 gccgatcaga ccgaggggca ttaaggtgag cgggaaaatt gagagcaaca tgggagcttc 3960 tacttcgatc aaaaatatta agaatcattg tttagctcct ggaaaactac cacagccgaa 4020 gtggacacct tctggcttat ctcgctctca aaagaggagg ttacagcgtc tttgagccat 4080 aggtcaaaaa gaaaatgagg ccgaagatgt aaagaacaaa acatgtaata atttagagcc 4140 tcgaacagca cctaggcaag tgtggagacc caaagaggta aaagttaaga gaccggtgat 4200 ttcccatagt agagataaat ccaatttgat gatagaagaa tcatcggtca ttagaaataa 4260 gtctccttca catgatgctg tggatgttgg tgcggtgttc gtcttgcctt ctaaatcatg 4320 cagtcaagaa aaccgatttt gcttgggggg caagacatta ttatgcttat aagggaacca 4380 agagaagatg aacggcaatg gatacaacat cacatctttg agccgccgtt tgttggatgc 4440 taaggcaagg tatgggttta ttgtgctcat catcatatta tatgcctatg ccatgttaga 4500 acattgctta ctatctagca catgtgtgtt cttgcttatc gaattgatat tatacataca 4560 tgttgcaaat gccagttcta agtagtggaa ttggtaggtt ggcatataat ttgtttgaag 4620 tgtgatttgg cttatgagtc gttgatattt atttaaagcc aaatcgtata tgtttttatg 4680 gatcaccata taatatatag atttcataat tattgcacca taaaagtttt gtttattagt 4740 aattcggcta atgtcaatgg tcaatgtgat gatttgcttt agagttgttt tctttaggaa 4800 cattggcatt gttaatattt tgcatacatg ctcaagccga ttacttatat ttgtagttta 4860 ttggaatcta tacatgtgac acatatgact ttggtgattc attattgatc atacttcaat 4920 tggctaagtg ttttgatgcc atgatgatta ttgtttcaaa agccatttga attggtattc 4980 atctatacat attagttgga tattataatt tttcatatgt atagagagga gggattttgg 5040 tctaatattt tgatacacca agcatctggt tataatatga agaaatgagt atttttgata 5100 ctagaaaagc cggtgcttga tttttaagtc tttggatgaa attgacaaaa tcacatatca 5160 ggggcagttt gaccggcatt gcatggccgg tctgaccggt ggtgacctgc ggtctgaccg 5220 gctctgcatg gccggtctga ccggacagac agggtggtct gactggcatt gcatggccgg 5280 tctgaccgat cccagacagg aggctggggg gcacgttaca attgattaaa aggccgaatt 5340 aattgtgaat tcggacattt gtgcccatga gttagaagta gcttggagaa ttcctttgat 5400 tagatatttg aaagatccta cacttaaggt tgatcggaag attcggcgcc aagcgctcaa 5460 atattatatc gccgaaaaat agatggagta ttacttagat aatgatcaat ctaaagttgc 5520 taggagagta gtacatgaag ggatttgtaa aattcatcaa tcggcccgta cgataaattg 5580 gttgcttagg agagtggggt ttcattggcc gaaactaatt gatgattgtt tcaaatgtta 5640 tagagggagt gaagcttgtt aactgatcgg caatgttcaa ttagcgcatg ccattatatt 5700 gaatcctatc atcaaaccat agccgttcca aggttgggct ttggatttca ttggtcaaat 5760 ttatccttcg tcatcaaaag ggcattggtt cgtgctagtt gcaatggatt acttcactaa 5820 gtggaccgaa gccatgccgc tcgagaatat tacttgtacg gaggtaattg actttatttt 5880 gaagcatatt gttcatagat ttggtattcc tcaaacgtta aaggagcttc tttacgtcca 5940 aggaaatgag aagttttgcc aaatcttatg atattaagtt gttgagtttt ctttactacg 6000 ctcaggctaa tggataagcc gagtaataaa acattattga aattgttgtt ttgccagttg 6060 gtaaatcttg gctctcttcg gtatttcaag caagatgact tgtcgattga agattacaag 6120 accttgatgg ggagcaattt tgaagacgtc atcgacaagc gtttgaagac tttgaaggag 6180 atgaagacac ttcaagacgg tgttttcaga gagcaattaa tgggagatag cttgaagaaa 6240 tacttcccga gcatttggta agatgcttag gaagtcctat ggccgataat tgaattatcg 6300 ccctgagata acatgttcta tgcttttagg ttcacgtatg ttcaccaaaa aggcagggga 6360 gcatgtgttt acacccaaat ttggcaccta tggacgaaat agggaaaaat ttccaatgtt 6420 tggaaagtgc cgggtttcct tcacagggcc ggtcagacca caggtatgtg ggcggtctga 6480 ccggctagta gggccggtct gaccgcaggt atgtgggcgg tcagaccgtc agggtccgag 6540 tccgagtctg ttttcgttgg gtctcgggtt tccttgctcg ggaaggcatg tttcatgttt 6600 ccattggttt ctatcccgag ttggaagtgg aggagggcct gtagagagca agaccaaccc 6660 ctatataagg gacaaggccg gttcattgta aaacccccga atacaatcta cttgaatcgt 6720 tcttttacta tgttttctat tttaccctag tttagtatat ctttgtcggt ttgcgccgta 6780 aaccgtccgc cgccgctgcg agagtgcgac acttctttgt aggtttgtcc tggaaacctt 6840 ccgttttgcc cacgatacgg gtagttatca tcatatcgat ctaaatcggc gtagaggctg 6900 attttgatct ctaaatcggc tccgctagcc ggtttagttg tttttctaca aaacccatct 6960 tgatttggtc gcttggctag atcgaggtgg ttggcgactc catatcacca caaggcgttt 7020 aggtgttgcg atcgtgctcg tcgacttgtc acaaaaagtt gccacca 7067 // ID OSTE22 repbase; DNA; ORY; 2037 BP. XX AC . XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 11-NOV-2002 (Rel. 7.1, Last updated, Version 2) XX DE Rice putative non-autonomous DNA transposon OSTE22 - a consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; TNR3; KW OSTE22. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-2037 RA Jurka J. and Drazkiewicz A.; RT "OSTE22: a putative non-autonomous DNA transposon from Oryza RT sativa."; RL Repbase Reports 2(10), 17-17 (2002). XX RN [2] RP 1-2037 RA Jurka J. and Drazkiewicz A.; RT "OSTE22: a putative non-autonomous DNA transposon from Oryza RT sativa."; RL Direct Submission to Repbase Update (05-NOV-2002). XX DR [2] (Consensus) XX CC Imperfect palindromic sequence. CC OSTE22 is homologous to TNR3 over part of its internal sequence. XX SQ Sequence 2037 BP; 768 A; 259 C; 253 G; 757 T; 0 other; ttcgaatcaa attttatgat actaaatgaa ctcatatgaa aaagttgtca aaaacaaagt 60 tgtataactc attgagatct acaaatttta ttttggtcat ttctccatct gactttgatt 120 gaactatata aaatttgaat ttcaaaatat gacaacttca aataatattt tcaaatagta 180 aatgatttca aatgaaaaag tcatcaacaa caaagttgta taactcatca agatctacaa 240 cttttatttt ggtcattttt ctatatgact ttgtttgaac agtttgaatt tgaatttcaa 300 aatatgacaa cttcaaacaa cattttcaaa tactaaatga tttcaactga aaaagtcatc 360 aacaacaaag ttgtataact catcaagatc tataactttt attttggtca tttcttcatc 420 cgataaagtg atatgtaaca ttgttcacaa aatttacata tctcttatat agtttataaa 480 ctataaaaga gatatgtaaa ttttgtgaac aatgttacta tcactttatc ggatgaagaa 540 atgaccaaaa taaaagttat agatcttgat gagttataca actttgttgt tgatgacttt 600 ttcagttgaa atcatttagt atttgaaaat attgtttgaa gttgtcatat tttgaaattc 660 aaattcaaac tgttcaaaca aagtcatata gaaaaatgac caaaataaaa gttgtagatc 720 ttgatgagtt atacaacttt gttgttggat gactttttca tttgaaatca tttagtattt 780 gaaaatattg tttgaagttg tcatattttg aaattcaaat tttatattgt tcaaacaaag 840 tcagatagag aaatgaccaa aataaaagtt gtagatcttg ataagttata caactttgtt 900 tttgacaact ttttcatttg aaatcattta ctatcctaaa atttgatttg aagttttaat 960 attttgaaat taattgaaag gagggaaaaa aatagacttc tcgacaaggg aggagcaaaa 1020 gggctggtcc ggaccagccc ttttctcctc cctcgtcgag aagttttcta ttttacctcc 1080 ctcctttcaa ttaatttcaa aatattaaaa cttcgaatca aattatgata ctaaatgaac 1140 tcatatgaaa aagttgtcaa aaacaaagtt gtataactca ttgagatcta caaattttat 1200 tttggtcatt tctccatctg actttgattg aactatataa aatttgaatt tcaaaatatg 1260 acaacttcaa ataatatttt caaatagtaa atgatttcaa atgaaaaagt catcaacaac 1320 aaagttgtat aactcatcaa gatctacaac ttttattttg gtcatttttc tatatgactt 1380 tgtttgaaca gtttgaattt gaatttcaaa atatgacaac ttcaaacaac attttcaaat 1440 actaaatgat ttcaactgaa aaagtcatca acaacaaagt tgtataactc atcaagatct 1500 ataactttta ttttggtcat ttcttcatcc gataaagtga tagtaacatt gttcacaaaa 1560 tttacatatc tcttatatag ttttataaac tatgagaaac aatgttacta tcactttatc 1620 ggatgaagaa atgaccaaaa taaaagttat agatcttgat gagttataca actttgttgt 1680 tgatgacttt ttcagttgaa atcatttagt atttgaaaat attgtttgaa gttgtcatat 1740 tttgaaattc aaattcaaac tgttcaaaca aagtcatata gaaaaatgac caaaataaaa 1800 gttgtagatc ttgatgagtt atacaacttt gttgttgatg actttttcat ttgaaatcat 1860 tagtatttga aaatattgtt tgaagttgtc atattttgaa attcaaattt aaattgttca 1920 aacaaagtca gatagagaaa tgaccaaaat aaaagttgta gatcttgata agttatacaa 1980 ctttgttttt gacaactttt tatttgaaat catttactat cctaaaaatt atttgaa 2037 // ID CLOUD-6 repbase; DNA; ORY; 508 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 04-AUG-2002 (Rel. 7.07, Last updated, Version 1) XX DE Rice Mutator-like non-autonomous DNA transposon CLOUD-6. XX KW DNA transposon; Transposable Element; Nonautonomous; CLOUD-4; KW CLOUD-6; Mutator-like; non-autonomous; target site duplication. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-508 RA Jiang N. and Wessler R.S.; RT "CLOUD-6: a Mutator-like non-autonomous DNA transposon from Oryza RT sativa."; RL Repbase Reports 2(7), 12-12 (2002). XX DR [1] (Consensus) XX CC 9bp target site duplications. Related to CLOUD-4. XX SQ Sequence 508 BP; 156 A; 108 C; 107 G; 137 T; 0 other; gagtgaagta catgggcggt ctctaaactt gtgccagtgt gtcatctagg tccctgaact 60 cctaaaatgc atttttaggt cccttaactt gccatgtgtg ttatataggt ccaaacgggt 120 tctaacccac tcgatgcgct gacgtggcaa tgccacggtg acacctccgt gttagtggaa 180 tccacatgtc aagcatatat aaaaaataaa attaaaaacc atattttctc ctcttaggta 240 gacagaaaaa aaagataaaa attctaaggt agagaggaga aaatatgttt ttctacttat 300 atttttttct atgtgactga cacgtgggtc caactaacac gtatgaacta tcgtggcatg 360 ccacatcagc gcatggaagg ggttggagct catttgaacc tatatgacac cccaaaacaa 420 gttcgaggac acgaaaatgc attttgagag tttagggacc tagatgacac acccgcacaa 480 gtttagagac cgctcgtgca cttcactc 508 // ID WANDERER repbase; DNA; ORY; 237 BP. XX AC U34601; XX DT 10-JUL-2002 (Rel. 1, Created) DT 09-SEP-2002 (Rel. 1, Last updated, Version 2) XX DE Wanderer mobile element linked to Xa21. XX KW mobile inverted repeat; WANDERER. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-237 RA Ronald C.P., Albano B., Tabien R., Abenes L., Wu S.K., McCouch S. RA and Tanksley D.S.; RT "Genetic and physical analysis of the rice bacterial blight RT disease resistance locus, Xa21."; RL Mol. Gen. Genet 236(1), 113-120 (1992). XX RN [2] RP 1-237 RA Bureau T., Ronald R.P. and Wessler S.; RT "Mobile inverted repeat elements of rice."; RL Unpublished (1995). XX RN [3] RP 1-237 RA Ronald R.P.; RT "Direct Submission."; RL Direct Submission to Repbase Update (22-AUG-1995)Pamela R. RL Ronald, Plant Pathology, UC Davis, Davis, CA 95616, USA. XX DR GenBank; U34601; Positions 415 651. XX SQ Sequence 237 BP; 77 A; 44 C; 51 G; 65 T; 0 other; gccaatcttc ccagcacatg atgtgcgcac ggaaaacgaa gcagttcatt agcgcgtgat 60 taattaagta tttgcttttt tttgcaaaaa tggattaata taatttttta agcaactttc 120 gtatagaaac tttttgcaaa aaacacattg tttagcagtt tgaaaagcgt gcgcgcagaa 180 aacgaggggg agaggatggg aaccagcaat gccgaacaca accttgacca ttttcgc 237 // ID LTR10_OS repbase; DNA; ORY; 608 BP. XX AC . XX DT 17-MAY-2005 (Rel. 10.05, Created) DT 09-JUL-2008 (Rel. 10.05, Last updated, Version 2) XX DE Rice putative non-autonomous LTR-retrotransposon - consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; KW Interspersed repeat; putative DNA transposon; TNR10; LTR10_OS. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-608 RA Gentles A. and Jurka J.; RT "Putative rice non-autonomous DNA transposon TNR10."; RL Direct Submission to Repbase Update (17-MAY-2005). XX RN [2] RP 1-608 RA Bao W. and Jurka J.; RT "Re-classification and renaming."; RL Direct Submission to Repbase Update (09-JUL-2008). XX DR [1] (Consensus) XX CC 5 bp target site duplications. Originally misclassified as DNA CC transposon TNR10. XX SQ Sequence 608 BP; 113 A; 126 C; 225 G; 144 T; 0 other; tgttgggttt agtcccacat cggtaattga tgatggggga gcacgactta aaaggtgggg 60 gcggtcctca cccatcagac tagtcttttg ggttgtgtag gcccaggacc taaagttgtg 120 gctccggttg ggcctgtggt ggagcaggcc caatgtgacc tgggtggccc acggttggtg 180 ggccgggctg cgcactctaa caagtggtat cagagcccaa ggtttggaac ccggaacaat 240 ttccatgggt cacatggtgg ggaggccagg taacaagtct tcggggtcac atgggttgat 300 gtgacggggg agattgttgg gcctgaggcc aggtaacaag tcttcggggt cacatgggtt 360 gatgtgacgg gggagattgt tgggcccgat gtgtgacggg ggagattgtt gggtttagtc 420 ccacatcggt aattgatgat gggggagcac gacttaaaag gtgggggcgg tcctcaccca 480 tcagactagt cttttgggtt gtgtaggccc aggacctaaa gttgtggctc cggttgggcc 540 tgtggtggag caggcccaat gtgacctggg tggcccacgg ttggtgggcc gggctgcgca 600 ctctaaca 608 // ID SZ-62LTR repbase; DNA; ORY; 4946 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE Rice long terminal repeat SZ-62LTR. XX KW Long terminal repeat; SZ-62LTR. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-4946 RA Jiang N. and Wessler R.S.; RT "SZ-62LTR: LTR from Oryza sativa."; RL Repbase Reports 2(8), 51-51 (2002). XX DR [1] (Consensus) XX SQ Sequence 4946 BP; 1450 A; 1074 C; 1017 G; 1405 T; 0 other; tgtaacatcc tgaaaattca agacaataaa aatcactaaa attttgaact ttttaaaact 60 tttgcatcat gctggttgtt atgattgcta ttgcttgcca aaccgtaaat gatcacaaag 120 aaagtaaagt aagggtctaa aatttaagta atagataaat ttacgagaat ataatatcgt 180 taatcctaca aataattatg cacaagatag ttaagtcaaa tattaatttc tattacaaat 240 tacagatcag gtattaaata ttcgaaccat gattgatagc ttgatgtcac atttagctaa 300 agaaatagta agattaaatc taattcattt gaatcgaatc tcacatgaaa tataagaaca 360 catgaaatga aatgatgatc accactataa tgatcgtgtt tataaataag taattcaccg 420 gaatatatag attgatactt agaacatttc accgagttac tcatgacatg aaaatcactc 480 atataaaata atggtcatat aaataaatta agctttatat ataaataaga gtaggtgagt 540 gtttaattag acaattagat taatattgta ccgagtctca atttatattt atcgaaatac 600 tagatccacg taaaatacat tattatacaa ataagttcat tcaatgtgct attgtaataa 660 taatggccac attagaatgt tttaattaat tttggaaccc tcaaagcctc caaaattatc 720 taggttaatt ttggaattat acctcattta aataatgcaa tagaaaaata tatataaaat 780 atgggtaata ttagaaattg agtaaacttt catctaaatt aacacatcta ttgggtaaac 840 attaattgtg tgaaatttag aatttatggg acaagatttg aatagcaaat caaccaaata 900 ggtaaaatag aaaaaaatca ctattcattg ccccctaggt gttcgatcgc gttccctagc 960 cctagcctct cctctgccac gcgccgcgcg ccgctccgcc tctcctctgt cgtcgccatc 1020 accgcgcgtg ccgccgctgc ctgccgccgc gccgacgtcg ccgcgcgccg cgcgcccggc 1080 cgccccgagc cccgtgccgc cgcaccgccg tcgccgtcgc gccatcgcct cgtgcctcgc 1140 gcccgcacgc cgctcgcccg tcccgttgac cgcgacgcga gcctgccgtc tcgcgccccg 1200 cgccgctgct gtgcgccgtc gctgtcgcat cccgtccccg ctgccacgcc gagcgctgtc 1260 gccgtcgcgt cgccattgcc gcgcgccgcg agccgtaacc gacgcgctga cgcaccttcg 1320 agccccgtgc cgacgctgcc gcgctgtcgc cgacaccgtc acatcccgcc tcgtgccgtg 1380 cgccaccgct gccgccccgt caccgccccg agccccgcgc cgccgtcgca tcaggccgcc 1440 gcccctcccc tctccttctc cccctctttc ctataaatac tttccccctc cattttcccc 1500 acgtcatttt cctcttcctc ccctctctcc ctccgctgcg ccaccgtcct cgtgccgctg 1560 cgccaccgtc ctcgtgccgc tgcgccaccg tcctcgtgcc gccacgccgc cgccctcggt 1620 gccgccgcgc cgcaccgtgt gccgagccgg gtgtcgccgt cgccttgtgc cgccgtcgtc 1680 gccaccgctg cgctgccgcc gtcgtcgccg ccgccaccgc cagtgagcca tctttccccc 1740 ccccccctcg cgtccaccac cgccgccgct cgggtggaca agagccgaga gagaaagaga 1800 gaggaaagga aaggccggta ggaaggaaga agaaaagaga agagaggaag agaaggaaaa 1860 gaaagagagg agaaaagaaa aagggaaaga gagagaaaag ggaagagagg tagagtgggc 1920 cccacctgtc agtcactata gctgtggata aggttgtatt ataaataaat gaattaggaa 1980 cagtgccttt ttacaatttc tcggatttat tcaaatttga atctttacac tagcataact 2040 tattcatttt aactcggatt taagtaaaac ttgaacctaa attcatctaa attcataagc 2100 tttctaatgg tatataattt actacttaat aaaatatatt tataataata aattaattaa 2160 tatcaaatgg ttggataata gttaacctaa atagtgtgcc aataaataaa aatggatatt 2220 gtatagtagc ataattatct ttaatgtgtt ttgtcacagt agcaaccaca taaattagtt 2280 ataatcaatc ctttataacc aaatccatga cttataaatt atttacataa agtttagcct 2340 catattttat aaacaaaaat ataaacacgc ctagatgaat ctttaacttg tttaggagag 2400 taatcacaga gctagttgta tttggaccac ttaaaaatta gttgatacaa tgtcatgtga 2460 agtagaatat atatatatat agtcagttga tatccattag ttaaacaaac agagccatct 2520 taaaatcaac atgtgttgta tagcttatag taaaaagcaa ctactcaaat atatgataca 2580 ataataagac attgttgctt acacatatac tatacgtccc attatagttg tacggtatag 2640 tattaatttg cgtatattaa ttagagggag tgtatgacaa acatgtatat tagataaata 2700 ctagtataaa tcttgacctc atatgattat aattatagtt caactgtaaa tatggattat 2760 tcattgtaaa attatgtgat gggataatcc gtaaccataa tatgattaac ctaaacaatt 2820 ctaacataca aagcatgggt aattgttaac cttttataat ttattttgac aagcgaaata 2880 tgtacataat taaaataaag cctccattaa taaaataata atacaaatga ttcacagtaa 2940 ttatttgacc gatccaaaat ccatccggca acagaacctc tagtgtataa ccgttctatt 3000 tagatagatg catgtgtaac cataatcctt ccttagccat tagctagact gaaccaccat 3060 gacaacagaa agactaagaa accttagctc ttagcttgat tagagtccat tagcaagcgc 3120 gaataatatg agcaacctta ggttcgacct cagcaaatat attttgtttg tgcatatttg 3180 attgttgctt gaatattggc ttttctcgca tattatagac tttgtgtatc ggttagtcgt 3240 gaggcaacgt ctgcaacttc cgggaggtga aggttgatca agattatatc gagaataggg 3300 attatcctga gcaggcaagt catcactatt ccttgaacat gttgatccca attgcgaaat 3360 tgttttgttt acaaataaaa ttgcatgcaa tgatgaacat cctacttgtg attatgccat 3420 gccttgatta ttgtttaccc ttaaatcttt gtagccatgt ttacgtatga gtccctagtc 3480 aactatgaca attgcttaga aatgctattg tagaatcatg catactcata tttatcaaat 3540 gctatatgct tgggcaatta cctttgggaa ggtaattgag atgcggcatg tggagacatg 3600 agcgccacat tgccatgatg ttgatgacat gatttgtgaa aggagaaata aaattaaaca 3660 actgttttcg actagggcgg acggaggatt tgggtggtat ctggaaaagg ctagtaccgt 3720 ccccggtcaa ttaaggaccg agccatgaag ttaagcatga aacgaccccc gtacaaccgt 3780 acttctcgaa tgggtataga cctagcggac tagatagctg agcggaggca gtatccatgc 3840 atagtggttt cttgatgtgt gaggcagggg ctctacggtg gggcagccat tggtaggacc 3900 gcgaggcggg tgtctacagt ggtgtcgcca tcggtaggac tgccatgtga gaatctaaaa 3960 cataattata acttaatgca tgtgtgagtc tttccttccc gggtgcgcca gaactcctct 4020 cactgctaga aaccgtgtac gcctagagtg catgaggatt taagttcatg gagcgggtac 4080 tgccaatgcg aggttatcga aaagctttgc cgtgacgcgt ctcatgtgtt gggacgaggc 4140 tcatgtgttg ggcagtcgcg gagtgcgggt aaagtgtaca tccactgcag tgtgagtaaa 4200 ccaaatctat tcgaatagcc gtgctcgcgg ttattgagca ccgggacatg tattacactt 4260 ggctagactc taaattctta acttgtgggg gatgggatat tgcatgatga attttatgct 4320 gatggagcca cttcccgaga ggagggaagg tggacatcct cagaaaacca tgacgattca 4380 atggcgggaa gctatccttg ggatcacaat ggatggtgga cagaaccgtc gttgtttaaa 4440 gtgaacactg gtactaaaat ttgatcagtc tatgctaggt tttaggcttg tgaaaagaat 4500 tgtaaaatta gctttatgca aaagaacctg aagccattcc ttgaaatacc ctctatcata 4560 tacattgttg ttgtggtggc ttgctgagta cggttggtac tcacccttgc tatttatata 4620 tcttttagga gagtgttgaa gagaagccct tgtcggtacg cttgcgtatc ccacaagatg 4680 atcggagtgc ggtcttgttc taggtctcgt tccccagtcg actgcctgtg gcatgttaac 4740 cgggccctta tattattttg tcttccgctg ttgttctctg atagttgttg gcctacctgg 4800 ccctaatgta agtatttaac tcttttagtc tgaattcatt cgtgatatgt tgtgatccaa 4860 ctatgtatgt gtgtaccaac tactgatcca gggattggta cggataaaca cagaagattt 4920 ccgatttcca aaatcggggg tctaca 4946 // ID SZ-8 repbase; DNA; ORY; 5498 BP. XX AC . XX DT 16-AUG-2004 (Rel. 9.07, Created) DT 11-OCT-2005 (Rel. 9.07, Last updated, Version 1) XX DE Rice retrotransposon SZ-8. XX KW Gypsy; LTR Retrotransposon; Transposable Element; SZ-8. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-5498 RA Jiang N. and Wessler R.S.; RT "SZ-8: a retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 123-123 (2002). XX DR [1] (Consensus) XX CC SZ-8 has 352bp LTRs. XX SQ Sequence 5498 BP; 1462 A; 1129 C; 1299 G; 1608 T; 0 other; tgtcagggag tgtgatcctg aagaagacaa ggacaagaga agggagccaa gtattgagaa 60 ggcagaagaa gcaggaagac aagctgaaga cttgggccgt catccagctc gtctgaggag 120 gcccaatacc aaggtccaag gcccagactg ggttgcgtga gtcacttgct cgcctgtgag 180 ctggcgtgat gttggtgtta gttaaatact gttctgtaaa ctgaattaag acattgaatt 240 ggcaactgga ggcgtaggcg gcggcggctc gatcctgttg gatctgagag gaaactatca 300 tagtgttgcc aaattatgtg tgtgcttgag tgaatccttg tgagccctaa caatctggta 360 tcagagccct tccgtgctgc atttcctctt gatttggctg taaatttttc tccagagcga 420 ggtgggattt ggctgcttcg gcggtgagaa atccacaaaa gtttcggctc cctcaatctg 480 gttggctaaa ttcggagagc atgtgaggga ttacggtcca aaactagcca tggatctaga 540 cgccaagttt gatctcttgt tcaagaccat tgctgacaac gagaagaaga ggatggaggc 600 ggaggagcgt accagggcgg actacttgga gttgaagaag acggtcgagg gccgcatacc 660 ggcgatggag aagaaggtgg aagaactagg tgagtcgctg cagtccttga gcaccaaggt 720 cgagcagctg gaaggcaaca cgatgcggca agtcaagttt gaaccattct ctgctgcaag 780 tgcttcgggt gttcaaggag gagctaagga ggagcagttc ggaggtgttg cgggaatgtt 840 tactcctaat ggtacgcctg agaaattttc cccttcccct attcctttca attgcgattc 900 ggcatcaccc acttttggta acggaatggg gacaatgaat ctaagtagtg ctattcctcc 960 tatgacttgc cctcaattta ctggtgataa cccccaaatg tggaagtcaa actgtgaaca 1020 atattttgat gtctatggaa tattgccagt tcactgggtt aagattgcaa cactcaattt 1080 ttctggtaat gctgcctttt ggtttcaatc tgttagaaat cagatgagtg ggatttcttg 1140 ggtgtctttg tgtgatttgg tatgctccag attttttaag gataggcagc aagctcttat 1200 cagacaatgg ttccatatta agcaagaggg cagtgtttca gagtatgtgg aaaaatttga 1260 tagtctgatg catcagttgc tagcttatta caactccctg ttgcctgttt actttgtgac 1320 taagtttatt gaagggctta gaagtgacat cagaatggta gttttggttc aaaggccaca 1380 agatttggat tcaacctgct cagtcgcatt acttcaggaa gaggctatgg aaggtgttaa 1440 gttccagggc tacaagagac caaacaattc agttatgatt agaaacaact caccagcccc 1500 gatagttgga caggcctcca caccccagaa aatcttctct cctcaaatta ctgaagatag 1560 aaggggcact gaagctgcaa gagcaagaga tgacagactg tcagctctga aatcctatcg 1620 caggtctaaa gggctctgtt tcacctgtgg tgaaaaatgg ggtaaggatc ataaatgtgc 1680 cacagcagtg caattacatg ttgtgcagga gcttcttgat attttacact caaaatctcc 1740 tacataaatt gaatcttctg gtggagaaca agaaattgat gaagtgggag atttgatgtc 1800 tatttctcaa caggcagttt gggggactga atcctctcgt tctatcagac tcatcggctg 1860 ggtgcagggt actgaattat tgatgctgat agactctggc agtactcatt cctttatgga 1920 tgaaacagtt ggttctaaga tggtgggtgt ttctccactc aggaagccct tgtctgtgca 1980 actagctgat ggtgggtcct tgttatgttc ccatgagatt gctaattgta agtggtggat 2040 gcaagggcat tctttctcta gtaatttcag actcttgaac ttgggtggct atgatatcat 2100 attgggcatg gactggttgg agcaattcag tcctatgcag gtggattggt cacagaaatg 2160 gatggaaatt caagttaaca accagcctgt caggttgcaa ggtataactt cccagactaa 2220 cagttgcaat gctatctctg ctgaacaatg cttgggtatg gctagaaagg ggtctattct 2280 gtatttggtc caattgacat cttctgtttc agaaatctgt gacactatgc ctgaagcagt 2340 acataattta cttctcaagt tccaggatgt tttttcagaa cctactgaac tccctcctaa 2400 gcgatattgt gaccatagta ttcctcttgt acctgtggca acacctgtta atttgaggcc 2460 ataccgcttt aatcctgctc ttaaggatga gattgaaaag caaatttctg atatgttgaa 2520 atctggagtt atccagccta gccacagtgc tttctcatcc ccagctctgt tggtcaagaa 2580 gaaggatggt acttggagac ttgtcattga ctatagaaaa ttaaatgcca ttaccatcaa 2640 gggtacttat cccatgccaa tcattgatga gcttttagat gaattatctc aggctaagtg 2700 gttttctaag ttagacctac gagatgggta tcaccaaatt agaatggccc ctggtgagga 2760 gtataagacg gctttccaaa ctcatactgg acactatgaa tacatagtaa tgtcttttgg 2820 gctgacggga gctccggcta cctttcaaag tgcaatgaat gatactctga aaacagttct 2880 ttgatgatat cttgatctac agccctgatt ttgagtccca tctggatcat attcaccaag 2940 tactagcctt actgtctgaa catcaatgga aggttaaatt gagcaagtgc tcatttgctc 3000 aacaacaaca tacttatctt ggccacacca tcagtgctac cggtgtccat actgatcaga 3060 gcaagatcca ggaagtgtta aactagccag taccaaccac tatcaagaaa ttaaggggtt 3120 tcttgggatt ggccggttac tatcgaaaat ttgtgaaggg atttggtctc attagtaagc 3180 cccttacaaa tcttttgagg aaggatgttc cttttgtgtg gaccactgca actgactcag 3240 cttttaacca gcttaagtag gctctggtga ctgccccggt cctagccttg cctgatttca 3300 agaaggtctt cattgtggaa actgatgctt ctgaagctgg tattggggct atgttatcac 3360 aagacaatca tcctatcgct ttcattagta aggccttggg tccaagaaca aaaggcttgt 3420 ctacttatga gaaggagtgc atggcaatcc tcatggcagt tgatcaatgg aggtcttatt 3480 tgcagttggg ggagtttatt atccttattg atcatcatag tcttatgcac ctttctgacc 3540 aaaggttaca cacaccctgg caacataaag ctttcactaa actccttggc ctcaattata 3600 aaatttgtta cagaaaaggt accagtaatg ctgcagctga tgctctctct cgcaagtttc 3660 aggatgataa cagtgaattg tatcacattt ccagctccac cccactctgg ttgcaagaag 3720 taacaaaagg gtatgctcag gatccctttt cccttcaatt cctcactgaa ttatctgtct 3780 gtccaacttc caggaagcat ttttctctct ctgctgggtt actgaaatat aagggcagag 3840 tttggattgg taacaatgat aatttacagc ttcaactcat gtctgcactg catgacagtc 3900 ccattggggg acactctggc tttctagtta cttataggaa aatcaaacaa ctgtttgctt 3960 ggccaaacat gaagaaaatg gtaaaaacct ttgttcacca gtgccaagtt tgtctccagg 4020 ccaaacctga tagagcaaag taccctggcc tccttaaacc tctccctgtt cctgaaggag 4080 cttggcaaac tatatccttg gatttcaatg aaggattgcc caggtctgag cattctgatt 4140 gcatcttggt tgttgtagac aaattctcta agtacagtca cttccttccc ttagctcacc 4200 catttttagc tctatctgtt gctaagctgt tcatgaaaaa tatctttaag ttacatggtt 4260 tgcccctggt tatcattttt tttagagata aggtttttac tagccaactt tgggaacact 4320 tgtttgaggg agctggcacc aagttacatt tcagttctgc atatcatcct caatccgatg 4380 gtcaaaccga aagggttaac caatgcctgg aaatatactt gcgttgtttt gttcattcag 4440 ttccttccaa atgggctgca tggttgcatc tcgctgagta ttggtataac acatcctatc 4500 actctgccat tcatgctact ccatttgagg tcctttatgg tcatccccca aaccattttg 4560 gcattggtat ttcagactgt tctattcctg agatggatac atggttcaag gaaaagaagt 4620 tgatgcaaca acttgtacag caacaccttc accgcgctca gcagcaaatg aaacactttg 4680 ccgacaagaa aagaagtttc agaacttttg ctattggtga ttgggtatac ttgaaacttc 4740 agccgtatat acagacttct gtggctgtca gagctaatca caaattatca ttcaagtatt 4800 ttgggccttt tcaagtgatt tagcgtgtgg gcagtgtggc ttatagactt taattaccac 4860 ctcatagttc tatccaccca gtgttccatg tgtcccaatt gaagtccgct gttggattct 4920 ctggtcttgt tcaatccaaa ctgcccactg atacttctac attgcagttt cccttgcata 4980 ttttggacag gcgtttggct aagaaaggta attcaactgt cactcaagtg ctaactcaat 5040 ggtctgattc tctcccagag gaagccactt gggaagatat ggaggatctg cgttcccgtt 5100 ttccagctgc attggcttgg ggacaagcca attttcaagg ggaagggctt gtcaggaagt 5160 gtgatcctga agaagacaag gacaagagaa gggagccaag tattgagaag gcaaaagaag 5220 caggaagaca agctgaagac ttggggctgt cgttcagctc gtctgaggag gcccaatacc 5280 aaggtccaag gcccagactg ggttgcgtga gtcacttgct cgcatgtgag ctggcgtgat 5340 gttggtgtta gttaaatact gttgaattga attaagacat tgaattggca attggaggcg 5400 taggcggcag cggctcgatc ctgttggatc tgagaggaaa ctatcatagt gttgccaaat 5460 tgtgtgtgtg cttgagtgaa tccttgtgag ccctaaca 5498 // ID CLOUD-3 repbase; DNA; ORY; 550 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 04-AUG-2002 (Rel. 7.07, Last updated, Version 1) XX DE Rice Mutator-like non-autonomous DNA transposon CLOUD-3. XX KW DNA transposon; Transposable Element; Nonautonomous; CLOUD-2; KW CLOUD-3; Mutator-like; non-autonomous; target site duplication. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-550 RA Jiang N. and Wessler R.S.; RT "CLOUD-3: a Mutator-like non-autonomous DNA transposon from Oryza RT sativa."; RL Repbase Reports 2(7), 10-10 (2002). XX DR [1] (Consensus) XX CC 9bp target site duplications. Similar to CLOUD-2. CC Original insertion in STOWAWAY2_OS. XX SQ Sequence 550 BP; 166 A; 96 C; 87 G; 201 T; 0 other; gagtaaattg tattagtggt acacaaattt gttataggtg ggtgcaattt agtacataaa 60 cttgtaaaat gctcgtttca gtacatgaac ttgcctagtt cgtgagaacg aggaccaaaa 120 taacttggca atgttaattt tataaatttg atattgatta ggatgtgacg tgcatacgtg 180 cagtgattat gtataagaca tgcaatattt ataaatttag tctctacttt atccttcatg 240 gttgaaatga tgaatttcat atgtttctaa cccttatatc aatgctcgat tttttaatct 300 ttttctacat tcactaaatc ctattctata ttttattgaa taggtgtatg tctaatggca 360 accttctcat atatatgttt acatagtatc ctaatcagcc cctaaatcaa taacattagt 420 catgtaatgt cctttttgac ttccccgcac gcaccacgca agttcgtgca tcaaaacgag 480 tattttttaa gtttgtacac tagattgcac ccaacctgat aagttcgtgt accgacgatg 540 caatttactc 550 // ID LINE-1 repbase; DNA; ORY; 3584 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE Rice long interspersed nuclear element LINE-1. XX KW LINE; long interspersed nuclear element; LINE-1. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-3584 RA Turcotte K., Srinivasan S. and Bureau T.; RT "Survey of transposable elements from rice genomic sequences."; RL Plant J 25(2), 169-179 (2001). XX DR [1] (Consensus) XX SQ Sequence 3584 BP; 1016 A; 810 C; 514 G; 1244 T; 0 other; ttgagctttt tctccttcaa cttttttaag aagcaaagac caaagccttg cccaatgagt 60 tgccttgaat attacctgta agaaagaaat atgattatag ccattaaaga cgatgtcatt 120 cctactaagc cacaaggccc aacaaattgc cgctatgccc tcccaagttt gtcttttgag 180 tttaggttca aaaccattca accaattacc aaacatatga gcgcaacttc tgggttgtct 240 aatccccaaa gtaaaataaa ccacactcca tatgtatcta gccattatac aatcaaagaa 300 aaggtgttgt atcgactctt tagagttaca aaagctacac aataagctat ccttccatct 360 tctcttagct agattatcct ttgttagaat caccccttta ttcaaatacc ataggaaaat 420 cttaatcttt aatagaattc ttagcttcca aattaaagat ttcctaggta ttactccatc 480 aaacataagt aacttataca tagagtttac gatgaacaac ccttctttat tagttttcca 540 tatgaattgg tcaagatgac ttgtcaggtt aacattagcc actttcgaga caatgacata 600 ccaatctgcc aagtttttcc caactatcgc tcttctaaag gacacattca acggtatcgt 660 ttccaaaacc ttagcaagta ctgtattctt attctgaacc aggttgtaca agttaggaaa 720 ttctttctca agagatttgt ttcccatcca acaatcctcc cagaatctaa cttgtttccc 780 atttctcacc ttaaagtgtc caagtaattg gaatgattct tttgctgtca tgagactagc 840 ccagaaatga gaatctcctt gctgcatttg aacctgtaga atggtttttt tgccaaatat 900 ttttttctaa gcaaattttg ccaaattccc tcttcattga ttaacttaga gatccattta 960 ctaagcatgc acttattttg aatctctagg ttctgaatcc ataaacctcc acactcctaa 1020 ggtttgtaaa gtacactcca tttggccagc ctatacttct ttttatgttc atcacattgc 1080 caaaaaaatc tggatctata atagtccagt ttctttaaga tacctttagg tatctcaaag 1140 aatgaaagca tatacattgc tagactgctt agcactgaat tgatgaggat taacctccct 1200 cctgttgaca gaaactttcc tttccagcta ctgatctttt tttcgaatct atcctctaac 1260 tccttccagt ctttgtttgc cagcctttta tagtgcattg gaaggcctag atatctaaaa 1320 gggtaggacc ctatcttgca gccaaataga aaagaaaatg ctttttctac ttccttggct 1380 tttccgtaac agaacatctc actcttatga aaattgattt ttaagcctga aagcttctca 1440 taggcactta gtaccatttt aagatttttg gcttcttcta catcattttc cataaagata 1500 atggtatcat ctgcatattg taaaattgac aacccgttat ctaccaaatt cggtattaca 1560 cctcgtgtca ttcctctttc agtcgaccta ttgattagaa ttgccaacat atctgccacc 1620 aaattaaata aaattggtga taagggatcc ccttgtcata accctttttt tgtttgaaaa 1680 aaatttccga tttcatcgtt gacttttaca gctacacttc cccctgtcac tatctgctct 1740 atccatttgc accaacgttc cgaaaagcct ttcatcctca tggtctgctg aagaaatttc 1800 cagtctacct tatcatatgc tttttcgaaa tctagcttga gaatgacccc atctaacttc 1860 ttcctatgca tctcatgtaa cgtttcataa aggataatgg ccccttccat gatatttctt 1920 ccttttagaa aggcagtctg tgaaggtctt atgacttttt gtgctactag agcaatccta 1980 tttgtcataa ccttagtaaa gaccttgaaa cttacattaa gtaagcatat cggtctgtat 2040 tgttgaatct gccttgcctc cttattcttg ggtagaagag taataatacc aaaattcaaa 2100 ttattgagag aaagattgcc cctatgaaag tctctaaaga ctgccattag gtcatcctta 2160 attacctccc agaacacttg ataaaactcc gccggaaaac catcaggccc tggggcttta 2220 ttatgctcca tttgaaagat agcatttttc acctcttctt ctgaaaactc actcgtaagc 2280 aactcatttt ccgctacgga tatttgaggt atatcatctt tttggttctc acacatagag 2340 aaattattct tttcaggagc tccaaaaaga ttcttataat agttagagat gtacttcttg 2400 agttgctcat tacctttaat tattccctct tcttggtcta gctggaaaat cttagttttc 2460 ctatgctttc catttgcaat catttggtaa tatttagtat ttctatctcc tacaatttgc 2520 cttgtttttg ctctttgata ccatttgatc tcttcttctc tcaacatctt agccaaggca 2580 tgttttactg aattttttaa ctcgagctct tgactagtca aaagtctagt ttcagctagt 2640 ttgtctagct catctgcctt tgccattaat ttcactttct ctttcttata agccccactt 2700 gtattcttcg cccatcctct aagaaactga cgaagtcttc aaattttatt ttgccatctc 2760 gcaatatttg ttgcccctct aacatctttg gtccaaatat ttgctaacag tttttgaaag 2820 tcctccctaa ggagccaacc gagctcaaat ttgaacaatg gttgactatc cttgtgagac 2880 cctttacacg tgtctagcaa catgggggta tgatcggaga gatctctact aagggcatga 2940 acagtcacca atgggttttt cacttcccac tctgtgctta ccaaaactcg atctaatttt 3000 tcatatgttg ggtttggcat ggcatttgcc caggtaaatt tgcgcccaga gagtatgatc 3060 tctctcaaat ttaaactatt tatgacagca ttaaataaga aggaccactt aacattgaaa 3120 tttgcattgt ttttctcctg tggtttcctt ataatattaa agtctccacc aattaccata 3180 ggtaatgcct cctttctaca tgaattaact agttcagtga gaaaggcctc tttgtactcc 3240 tcctgtgttg ccccataaac tgctaccaat atccattgga aagcatcctc cttatttcgt 3300 acatgaaatt taacataaaa atctccttcg tctatgcttg acactttgaa gtattctagg 3360 ttaacaccaa gtaaaattcc ctcacttctc cccttaggtc tcgtccaatg ccagagaaac 3420 tctcttcctc cataaatact tttaagccac gagtcagtat acttattttt actcgtttct 3480 aatagggcaa taaagtctag cttttgctct ttagaaattt cggacaggaa cctagtttta 3540 gccaagtctt taagacctct gctattccaa aaaattcctt tcat 3584 // ID TOURIST6_OS repbase; DNA; ORY; 334 BP. XX AC . XX DT 09-SEP-2002 (Rel. 7.08, Created) DT 09-SEP-2002 (Rel. 7.08, Last updated, Version 1) XX DE Rice non-autonomous DNA transposon TOURIST6_OS. XX KW DNA transposon; Transposable Element; TOURIST6_OS; non-autonomous; KW target site duplication. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RA Bureau E.T. and Wessler R.S.; RT "Mobile inverted-repeat elements of the Tourist family are RT associated with the genes of many cereal grasses."; RL Proc. Natl. Acad Sci. U.S.A 91(4), 1411-1415 (1994). XX RN [2] RP 1-334 RA Jiang N. and Wessler R.S.; RT "TOURIST6_OS: a non-autonomous DNA transposon from Oryza RT sativa."; RL Direct Submission to Repbase Update (28-NOV-2001). XX DR [2] (Consensus) XX CC MITE, TAA target site duplications. TOURIST superfamily. XX SQ Sequence 334 BP; 115 A; 50 C; 53 G; 116 T; 0 other; ggtggtgttt agatccaggg acttaacttt agtccctgtc tttagacact aatttagagt 60 attaaatata gactacttac aaaactaatt acataaataa aagctaattc acgagacaaa 120 ttttttaagc ctaattaatc tataattaga gaatgtttac tgtagcatca cataggctaa 180 tcatggatta attaggctca ttagattcgt ctcgcaaatt agtccaagat tatggatggg 240 ttttattaat agtctacgtt taatatttat aattaatttt caaacatccg atgtgatagg 300 gacttaaaag ttttagtccc atctaaacag ggcc 334 // ID CLOUD-7 repbase; DNA; ORY; 495 BP. XX AC . XX DT 06-NOV-2002 (Rel. 7.1, Created) DT 06-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Rice Mutator-like non-autonomous DNA transposon CLOUD-7 - a DE consensus. XX KW DNA transposon; Transposable Element; Nonautonomous; CLOUD-4; KW CLOUD-7; Mutator-like; non-autonomous; target site duplication. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-495 RA Jiang N. and Wessler R.S.; RT "CLOUD-4: a Mutator-like non-autonomous DNA transposon from Oryza RT sativa."; RL Repbase Reports 2(7), 11-11 (2002). XX RN [2] RP 1-495 RA Jurka J. and Drazkiewicz A.; RT "CLOUD-7: a Mutator-like non-autonomous DNA transposon from Oryza RT sativa."; RL Direct Submission to Repbase Update (29-MAR-2002). XX DR [2] (Consensus) XX CC 9bp target site duplications. XX SQ Sequence 495 BP; 138 A; 113 C; 106 G; 138 T; 0 other; agagtaaaat acaccagcgg tccttaaact tgtcaggagg tttcacttag gtccacgaac 60 ttgcaaagcg cacatcgaga tccctaaact tggtttattg tatcatcccg gtccaaagcc 120 gcgtttgacc gtggtcttgc ctacgtggca tgccacgtgg acgatgacat ggaatttttt 180 tttttttttt tttctccctt cttccttctt ttttttcttt cttcttcttc ctctcccctc 240 gtgccgcctc tcaccacgga ggaaaaaaag aaggaagaaa gagaaaaaag aaggaagaag 300 ggagaaaaaa aaaaaaaaaa attccatgtc atcgtccacg tggcatgcca cgtaggcaag 360 accacggtca aacgaggctt tggaccggga tgatacaata aaccaagttt agggatctcg 420 atgtgcgttt tgcaagttcg tggacctaag tgaaacctcc tgacaagttt aaggaccgct 480 agtgtatttt actct 495 // ID SZ-22 repbase; DNA; ORY; 4404 BP. XX AC . XX DT 16-AUG-2004 (Rel. 9.07, Created) DT 16-AUG-2004 (Rel. 9.07, Last updated, Version 2) XX DE Rice gypsy-type retrotransposon SZ-22. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW GYPSY superfamily; RIRE4; SZ-22. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-4404 RA Jiang N. and Wessler R.S.; RT "SZ-22: a gypsy-type retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 79-79 (2002). XX DR [1] (Consensus) XX CC SZ-22 is a gypsy-type retrotransposon. It has 759bp LTRs. CC Similar to RIRE4. XX SQ Sequence 4404 BP; 1199 A; 880 C; 951 G; 1374 T; 0 other; tgatgtgacc atggctacta tagatacaac cgtcgttcac atcaagatca agccgtccaa 60 gttctgcaat ccagttcggc tacctgctac agtgtggact tcaaacggcc gccaaatatg 120 catgcaagct ccattttgga tccatgatta cttgatggaa agctctcaga gtcatctttc 180 caatgatcta gcttcatcgc caaattccaa cccagtcggc caaaatcaca aaaaaaaggt 240 gttgcgtcac ctataatggg cctatgggcc tgtaacttct ctgggacccc ggcccaagtg 300 gggcccatgt ggggtgcgcc ccaaccaggt ggagcacgac cctagggtcc ccttaggtcg 360 tcctcccacc tccttaaata gttaggtacc cctttagagt ttcttgggtt ttgatagatt 420 aaagtttagc cagtgctact tgcttgcagc gcacgtgtcg gctagatcgt ccgtctgctt 480 gctcttcgga accccaactt atcttgtgta ttcattccta tttgctattc agattgcttt 540 tatcttgttc ttgcttgttt cttcgatttg cttgcaggaa taaggttgat ctgcaccggc 600 aagatcaaca acccacggag aggtgtattg atcgctaagg cgcaacagaa cgtcttgtac 660 ggttgtagtc ggatcgttaa cgtttctccc aaatcatagt tatcacaact caccgaaaga 720 tcgggccaac aacagccttg agtgtcgaga ggaactcagg gttcatcagg tggtatcaga 780 gctttcatta ctcggtgagt ttttatcttc ctataaccag aaaatagcca tacaaaaaaa 840 atccgtatca tttacctagc catattgtgc cattgcattg tttttttcag tttttgcttt 900 gttgaatttt gtgttgcatc gtctcgtcgt gttgctggtc ttagcgtcta gttcgtttag 960 agtttcgagt tctggtcatg ttttatacca gagtcgtcgt cgcctctgtg tctctgttat 1020 cgtcgggacc tacgaaaacg gaatcggctt gctgccacga ttctattttt gtagttttca 1080 aaagtttcta tcggttggat ttggagttgt tgagttgcat cttgggtttg ctgattgccg 1140 tgcttctgtt ttggccgtgc ctgtgtcgtg cacgagagga ggaaagtgaa ttaccaatct 1200 gattttggaa gtagtcaagt ttgttttgga aagatatagt agattggatt ggttaaaaat 1260 cagtttcatt tttatcccat acaccaaatc ctaattatcg gctaccatcc actccacctc 1320 ctggccgact cccactcgtc cctttggccg agtccgactc cctccctccc tttcacggtt 1380 ccaagttgtg tcaaacacct tggtgaattt ttgtttggta tcggttttga gatctgtttg 1440 gaaaaacgga accggcataa attcagcatt ccatttttgt ataatttgaa ttttgggttt 1500 agacttttac atttgagtcc ctgtaaattt tatatttacg tttgagtcct tgtaacctta 1560 cattaaggtc cttgagtcag tttttgttaa aaaaaatcaa gaaaaaagtg agaaaaaaag 1620 gcagaaaggt gcataaaaaa ataaaagaaa aaaaaactgc accaaaaaaa acagaaaagg 1680 aaaggaaaga aaaaaaagaa aagaagaaag aagaaagaaa gaaaagagaa aatactgtta 1740 tgtttgagct gaacttcata tatcagagtt gtgcatgagt tgttcctagt gctatcttgt 1800 ggtatcgttt gtgtctaggc tcggtctcta gtacgttcta gcctaggacc agcacggtac 1860 ttgactttga accattattc aactttacat tctctgattt gagcatttgc tatccctttg 1920 ctacatattt aagcctaccc agagctccac agatatgatt gcagccgtac agcaagtgtt 1980 tcccaaggca tcgatacatc caatctccat tggggtgctt ggttaagtcg gtgtacatca 2040 ccattccgct tgctttggta agaacttgta agagcttcgt taaaagcttg agtgtgtgtg 2100 atatttgagc tgccactacc tagtagttga taggagcgtg catatttttg tgtgtttctt 2160 gtttgcttct aaccatggca ggattgcgta agggaatacg agaacatcga cttctacacc 2220 ttcgacgaga tatgacgact tctccacgtg atgcatatga ggtacatgac tataattttg 2280 aacaagttgc atctaagtta ccattctatg atggaaagta ttgattctgt tgcatacatt 2340 gattgggagc tagcagtaga caatgaattt gatatatatg atttttctga tgctcaaatg 2400 attaaggctg ctagtaataa gtttacctct tctgcattat tttggtggac ttatgttagt 2460 aataaacctg aaacttagga tgaattgaaa accatgatga gaaaacgctt tgtgacttct 2520 tattacaaat gtactctttg ggagaaatta gaacatctga aacaaggtga tagaactgtt 2580 agggagtaca ttcatgaatt taaggtctgt atcatctaca gtggtctcaa agagtgcaat 2640 gaaaatacaa tgcgtagatt tttcaatggg cttaattctg aaattcaggt tttgcttgat 2700 aatgtgacat ataattatat tgggcaccta ttcatgcttg ctcgtagcat tgagagttag 2760 atcatatcaa aggcgaggat gcatgaccaa tgtgatttat ctcctatttc tgaatcccca 2820 atatacttat gtaatgatga tgtgcaaaca ttggaggagc aatcttttgt ctcccctgtt 2880 actaacgttt tgcaggaaga tcagcacatc caagaaaagg agaatggtat acttgagaag 2940 aaagaggatg aagcacctac gatgtctgaa gaaagttcgc aaggtaaatt aaatggtgct 3000 gagagaaatg aaggtgagta ttctcaaggt gagctatact tgtccacttt tcatgctata 3060 gtagagcaac cattagtgga atcaattgct gagttgcctt tgtcacaaat tgatttactt 3120 gctgttcctt gtgataaaga agagttgtgc gataatgctt cacttatatc catgccacaa 3180 ctagtgaatg aacatgctat tcctgttgtt aatactaact gcgctgattt taagcatgtt 3240 gttcacattg ctaatagagt agaggaacgt gaattgacat attctttaaa tactttgggc 3300 tatgttcagt ttgctgattt tcatgagctc gataatttga aggagaaatt atttgctaag 3360 tctgatttgc catgtccaag taacactatt tttcatctct ttggtgaata taatgataga 3420 ggaatatatt tggtgcatag agtttacatc tgttcagatt tagaacctcc tgtacttgtg 3480 gataaaacat gcaagctaga gagaaatgtt attgctaaca aaattatctc gagtttgtct 3540 tgttgtgatt ggaagaaaca ggttgtttta aatagactac acgaagagca ccatatggaa 3600 aaaccgagga cggttttccg tgaagaaggg gaggatgatg tgaccatagc tactatagat 3660 acaaccgtcg ttcacatcaa gatcaagccg tccaagttct gcaatccagt tcggccacct 3720 gctacagtat ggacttcaaa cggccgccaa atatgcatgc gagctccatt ttgggtccat 3780 gagtacttga tggaaagctc tcggagtcat ctttccaatg gatccagctt catcgccaaa 3840 ttccatccta gtcggccgaa atcacaaaaa gaaggtgttg cgtcacctat aatggcctat 3900 gggcttataa cttcgtctgg aaccccggcc caagtggggc ccatgtgggg tgcgccccaa 3960 ccaggtggag cacgacccta gggtcccctt aggtcgtcct cccacctcct taaatagtta 4020 ggtacccctt tagagtttct tgggttttga tagattaaag tttagccatt gctacttgct 4080 tgcagcacgc gtgtcggcta gaccgtccgt ctgcttgttc ttcggaaccc caacttatct 4140 tgtgtattca ttcctatttg taattcagat tgcttttatc ttgttcttgc ttgtttcttc 4200 gatttgcttg caggaataag attgatctgc actggcaaga tcaacaaccc acggagaggc 4260 gtatcgatcg ctaaggcgca acagaacgtc ttgtacggtt gtagtcggat cgtcaacatt 4320 tctcccaaat cgtagttatc acaactcacc gaaagatcgg gccaacaaca gccttgagtg 4380 ttgagaggaa ctcagggttc atca 4404 // ID RIRE7_I repbase; DNA; ORY; 5896 BP. XX AC AB033235; XX DT 10-JUL-2002 (Rel. 7.06, Created) DT 10-JUL-2002 (Rel. 7.06, Last updated, Version 1) XX DE RIRE7_I is an internal portion of the RIRE7 gypsy-like endogenous DE retrovirus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW GYPSY superfamily; RIRE7_I; endogenous retrovirus; gag-pol. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-5896 RA Ohtsubo H., Kumekawa N. and Ohtsubo E.; RT "Direct Submission."; RL Direct Submission to EMBL/GenBank/DDBJ (05-OCT-1999). Hisako RL Ohtsubo, The University of Tokyo, Institute of Molecular and RL Cellular Biosciences,; Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-0032, RL Japan (E-mail:hohtsubo@ims.u-tokyo.ac.jp, Tel:81-3-5841-7854, RL Fax:81-3-5841-8484). XX DR GenBank; AB033235; Positions 1 5896. XX SQ Sequence 5896 BP; 1680 A; 1179 C; 1337 G; 1700 T; 0 other; gtggtatcag agctcaagtt gctcggtgag agattttatc acttctttgt ttttacctac 60 agcccaaaag aaaaaccact aaaataggtc agacccgaaa tcacagaaac atgttgagcc 120 tttgctgttc tacttagtct ttgcttgctg agttttcgat tgcatcgatt ggttgagttg 180 ctggttctag tagtttagtc ctttagagtt tcgagttctg ctcacgattt cgtcaccgca 240 aacacttcca ccatcacttc atttatcttc atcctgctgc caccatcacc accatattca 300 ccacgaagtc cacctccaac cccaccaaat ttcgtccacc acaaccagca gcaccctcat 360 caccacatca gccaccccca aatgcattta ttgctgcctc caccaacagc caaccctttt 420 gcaacttttt gaagtgaatc agcccttccc aagaaagcat ttaagtgctc tcacttttaa 480 cttgttggct gaatcatgta actagccaac caacccatca ttacttcttg ttttgatttg 540 ttggctgaag cttgtgaaat ttcgaaaatg tttgagaaaa ggttattttg ctaaggcttg 600 ttttgacttg ttggctgaag ctttgagctt gctgtacaaa aaaaaagaaa gaaaacaaaa 660 aaaaagaaag aaaaaaaatc agaagtgaag agaagaaaaa aaaaggaagg gaagagagga 720 agttgttgtt gttgctgttt tgtttgtgtt attttcgtgc tattttgagt ggctacgctt 780 gtgactaggc tcgcgtctct aaagggtttt gcctaggacc agcacaatac catcgttgaa 840 tgattattca acttgctttg attaatgtgg ttctagctat accttgatat tacttgcagc 900 cacctatagc tccacaaatt tttatctact atatcacagg attgtgcttg ttgtcggctc 960 cagtactact aaccgttgtt gctgttcttg ctgtttgcca acgcctttta cataacaaag 1020 taagaacatg taagaactcg tttgcacaag tttggtagaa gtggagatgg acaacaccta 1080 gctccaatag ttgataggac atatttcttg tgaattgttt cttcccatta accatgacag 1140 gaggatcggg ggagcaccct caacattcac cacgtacgag gggcatcata caacattttg 1200 agcgccaggt gagggagcat gctgaaggcc ttgatgagga tgttagggtc gccaatgatc 1260 gccttggtca attggaggct gctcaaatta acaccaactc caagctttcc tcattggaga 1320 ggtcccttgt ggctgtgaac acttctcttg caggtatctt gaatacgttg gagagaattg 1380 gccaagatgg tcatgatgga tcgtctaggc gcaaccacaa tggccatgat gctaatagca 1440 gcatcgcagc aagggaagaa ctggagtacg ctgctgacac tgagcatgat gaggaggtac 1500 ttggtcgtcc acaaagacaa cagcgccggc agcgccatgg catgggcgct ccaccacggc 1560 gggaggtacg tgataatgat gattctttag gcaagatcaa gtttaccatt ccttgctttg 1620 atggaaaata tgaccctgat gcatatctta cttgggagtt agccattgtt cagaaatttg 1680 cttgccatga ttttcctgag aataaacgtg ttagggctgc tactagtgag ttcactgatt 1740 ttgcatccat ttggtggagt gaatttgttc gttccaatcc aaataacact ccccaaacct 1800 gggatgcaat gaaaagagtc atgcgagcta gatttgttcc ttcatatcat gcacgtgatt 1860 tgctgcacaa attgcaacaa cttagacaag gaaacaaatc tgtagaggag tattatcaag 1920 ctttgcaaat aggaatgctt cgttgtggat tggtagaaaa tgatgatgct ggtatggcta 1980 gattcatggg tgggctaaac cgagaaattc aggacattct agcctacaaa gaatataatt 2040 caattaatcg tttgtttcat cttgcttgta aagctgaaag ggaagtacag ggacgaagag 2100 ctagcttcag gactaacatt tctgcaggtt gtgctagctc ttggacatct tccaacgctg 2160 ctgcaccgtc aactcgagca gcagcaccat cgtgctcaag caacaagctg cgtccctcta 2220 caacaaactc tacaccatgc ccgagtgaac caacaagagg ggttgctgct acaccttcca 2280 agagctcatc atcagtagct tcatcaggaa ggacaagaga tattcagtgc ctacgctgca 2340 agggctatgg tcacgtgcgc aaggactgcc caagcactcg tgtaatgatc gtgagagctg 2400 atggtgggta ctacttcgat agtgatttag atgaagaaac ctatgctttg cttgcaacta 2460 acaatgcagg ggaaggtgac gcgccccacc aagatgagga acacattagg gctgaagctg 2520 cagagcacta tgagagcctc gtggtgcagc gagtgctaag cgcacaaatg gaaagggctg 2580 aacagaatca gctccacacc ttgtttcaaa ccaagtgtgt gatcaaggaa cgctcttgcc 2640 acgtgatcat agatggagga agctgcaata atttggctag tgctgaaatg gtggagaaac 2700 ttgcattgag cacacagcca catccgcagc cctactatat tcaatggctt aatagcagcg 2760 gcaaggtaaa ggtaacacga ttggtaagag tacattttgc cattggttct tatcatgatt 2820 caatcaactg tgatgttgtg cctatgcaag catgttctat gttattaggt aggccatggc 2880 agtttgataa agattcttta cactttggca aatccaatca atactccttt gtgcataatg 2940 gaaaaaaact tgtgttacat cctatgtctc ctgaagttat tttaaaggat gaacttgcta 3000 gagctagcaa acaaaaaaat caggagcata ctaggagtga gcatcttatt gcggctaatg 3060 aacttgagaa gcataagaag aaacccacca actctgttca aaataataaa aatgagatta 3120 agctgaaggg atcttgtttc attgcaacaa aatcagattt ggatgaagtt gacactgaca 3180 ctgttttttg ctatgctttg gtttgcaaag aaaccttatt tccaattgag gatactccta 3240 tttctttgcg tcctccggtc actaaccttt tgcaggagta tgctgatatt ttcccaaagg 3300 aggttccacc ggggctgcca ccaattcgag ggattgagca ccaaattgac ctcattcctg 3360 gggcctctct gccaaaccgt gcgccataca ggaccaaccc ggaggaaaca aaggagattc 3420 agcgtcaagt gcaagagtta ctcgacaagg ggtatgtacg tgagtctctt agtccttgtt 3480 ctgtccccgt gcttttagtt cctaagaaag atggctcttg gcgcatgtgt gtggattgta 3540 gagcaattaa caacatcaca atcagatatc gtcatcctat ccctaggcta gatgatatgc 3600 ttgacgaatt gagtggttca cttgtgttct ctaaaattga tttgcgtagt ggttaccacc 3660 agattcgcat gaagttagga gatgaatgga aaacagcttt taaaactaaa ttcggcctat 3720 atgagtggtt agtcatgccc tttggtctca ctaatgcacc cagtactttc atgagattaa 3780 tgaatgaagt tttacgtgct ttcattggca gatttgtggt ggtatatttt gatgacattc 3840 tcatatatag cagatcaata gaggatcatc atggtcattt gcgtgctgtt tttgatgctc 3900 tacgagatgc acgtttattt ggtaaccttg agaagtgcac attttgcaca gatcgagtct 3960 cttttcttgg ctatgttgtg actccgcagg gaattgaagt agatcaagcc aaggttgaag 4020 ccatacatag ctggccggtt ccaacaacga tcacacaagt gagaagcttt ctaggacttg 4080 ctgggttcta ccgccgcttt gtgaaggatt ttagcaccat tgcagcccca ttacatgagc 4140 ttaccaagag aaatgtcaca ttcacttggg ctgcagcaca aaggaatgca ttcgacactt 4200 tgaaagataa gttaacacac gctcctttac tccaacttcc tgatttcaac aaaacttttg 4260 agcttgaatg tgatgctagt gggattggat tgggtggtgt gttgttacaa gaaggcaaac 4320 ctgtagcata tttcagcgag aaattgagtg ggcctagttt gaattattct acttatgata 4380 aggaattgtt tgctctagtg cgaacattgg aaacatggca gcattattta tggcccaaag 4440 aatttgttat acactctgat catgaatctt tgaaacacat tcgaagtcaa gcaaaacata 4500 accgtcggca tgctaaatgg gttgaattta ttgaatcttt tccatatgtc atcaaacata 4560 agaaggggaa agaaaatgtc attgctgatg ctttgtctag acgttacgca atgctatccc 4620 aacttgactt caaaattttt ggcttagaaa caataaaaga gcaatatgcg cacgatgatg 4680 attttaaaga tgtgttgttg aattgcaagg agggaaggac ttggaacaaa ttcgttctca 4740 ccaatgggtt tgtgtttaga gctaataagt tatgcattcc agctagctcc gtgcatatgc 4800 tattattgca ggaagcgcat ggtggagggc tgatgggaca ctttggtgtg aagaagatgg 4860 aggatatcct tgctgaccat ttcttttggc ctaagaagag gagagacgtg gagaggttcg 4920 ttgctcgctg cacaacatgc caaaaagcta aatcacgcct taaccctcat ggtttgtata 4980 tgcctttgcc tgttcctagt gtgccttggg aggatatttc tatggacttt gttttagggc 5040 tgcctagaac aaagaagggg agggacagta tctttgttgt tgtagataga ttttctaaga 5100 tggcgcattt cataccttgt cataagagtg atgatgctac acatgttgct gatttgttct 5160 ttcgtgagat tgttcgcttg catggagtgc caaacaccat agtttctgat cgcgatacaa 5220 aattccttag tcatttttgg agaaccttgt gggctaagtt ggggactaaa cttttatttt 5280 ctactacatg tcacccccaa actgatggac aaactgaggt ggtgaataga acattatcta 5340 caatgcttag ggctgttttg aaaaagaata ttaaaatgtg ggaagaatgt ttgcctcatg 5400 ttgagtttgc ttataatcgt tcacaacatt ctactactaa gaagtgccct tttgagattg 5460 tttatggcct tctaccccgt gctccaattg atcttttgcc cctcccaact tcagagagag 5520 tgaactttga tgcaaaatat cgcgctgaat tgatgttaaa actgcatgag accactaagg 5580 agaacataga gcgcatgaat attaagtata aacttgctgg gagcaaagga aagaaacatg 5640 ttgcttttga acctggtgat ttggtttggt tgcatttgag aaaggatagg ttccctaatt 5700 tgagaaaatc taagttgcta cctagagctg atggtccttt caaagtgcta caaaagatta 5760 atgacaatgc atacaagctt gagctacctg ccgattttgg ggttagcccc acgtttaaca 5820 ttgcagattt aaagccatat ttgggagaag aagatgagtt agagtcgagg acgactcaaa 5880 tgcaagaagg ggagga 5896 // ID SZ-39LTR repbase; DNA; ORY; 948 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 04-AUG-2002 (Rel. 7.07, Last updated, Version 1) XX DE Rice long terminal repeat SZ-39LTR. XX KW LTR Retrotransposon; Transposable Element; Long terminal repeat; KW SZ-39LTR; retrotransposon. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-948 RA Jiang N. and Wessler R.S.; RT "SZ-39LTR: LTR from Oryza sativa."; RL Repbase Reports 2(7), 95-95 (2002). XX DR [1] (Consensus) XX SQ Sequence 948 BP; 292 A; 209 C; 190 G; 257 T; 0 other; tgataagagt gttaggtccc gatctttcga taggtattga taaacagtcg atttgggtgg 60 agtcggagtc gcgacataac tcgatccggc ttctgaacga atatgctact gagccccgca 120 attgcagcac cacatctcct ctggttacca actatgctga aacccaattg acctcgccga 180 aaaggctaat cccaagaata caagcaagaa caagatagat tgcaaccaaa ttgcatatga 240 atgattaagc acacgaattt ggggttctac aaatcgatct agcggcgaaa ctattcttga 300 cagattaatc taagcaaaac atgactctaa acgatgacgg ctactgacta aatatgatta 360 gggacattct agggttaccc taaagcgcac acccccttgg gctaagccca cgacacaatt 420 acaaggccca aaacacaaat cagattcgga ctgtatgagg tacatggctt gttttgcaga 480 ttcccggcag ctcggtagga attttgacat gggaccaaaa ccatctgaaa gtagactcca 540 taagcttttc aataagtact catgggcccc gaaattcctt ctagatcagc agctagttcc 600 gtttgaagtt gacgctgtca ggaggcccga atccgaatcc aaaatatgta gaattttatc 660 tcttgtcttc tatggaccaa aagtgacgcg gtgaggtaga agtaaacttg gagtaggtct 720 tagtttggtc cccaatcaac ttctttgatc atccatgcat tccttacgct cggtgtcttt 780 tctttcgccc aagcaagtac ctctgcaaat gaaaacacat gaaacttatt gtgtagcatt 840 atttgttcaa atatataaca agtaaatcaa atatagaaca tatgcacctt tagttgatta 900 atacataagg tagttatggt tatatccgaa ctagttgtgt cctcctca 948 // ID OSTE24 repbase; DNA; ORY; 680 BP. XX AC . XX DT 08-NOV-2002 (Rel. 7.1, Created) DT 11-NOV-2002 (Rel. 7.1, Last updated, Version 2) XX DE Rice putative non-autonomous DNA transposon OSTE24 - a consensus. XX KW DNA transposon; Transposable Element; OSTE24; TNR3; KW non-autonomous. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-680 RA Jurka J. and Drazkiewicz A.; RT "OSTE24: a putative non-autonomous DNA transposon from Oryza RT sativa."; RL Repbase Reports 2(10), 19-19 (2002). XX RN [2] RP 1-680 RA Jurka J. and Drazkiewicz A.; RT "OSTE24: a putative non-autonomous DNA transposon from Oryza RT sativa."; RL Direct Submission to Repbase Update (05-NOV-2002). XX DR [2] (Consensus) XX CC Imperfect palindromic sequence. CC OSTE24 is homologous to TNR3 over part of its internal sequence. XX SQ Sequence 680 BP; 240 A; 98 C; 95 G; 247 T; 0 other; gaattttttt tatttttaca tttttttatt aaaatattta caaaaataat tttttgtttc 60 gaaaatttac aaatctagtc gcctccgccc tctgggaggg cgttttttaa aaatcgccct 120 tccaaagggc gaagggacct aaatgcaaat tttttatttg tgttcaaacc ctttccaccg 180 gttttaattg cttaaaaact aataatgctt atttgacact ctaaatgatt ttaaatgaaa 240 aagttataaa ctacaaagtt gtagatctca tcaagatcta caacttttat ataaagttta 300 tctccatcca atgtcgtttg aaatgtagat ctgagatttt ttaaaatagg ttttagattt 360 tgtaacgaat atttggacat ctaaatgatc taaaatgaaa aagttatcaa cacaaaagtt 420 gtagatctca tcgagctcta caattttgat ataaagtttt ttttcatctg actttatatg 480 atataatttt aaattgtaaa atcatagagc taacaagcta tgctggaaaa tttgcattta 540 ggtcccttgc gccctctgga agggcgattt ttaaaaaacg ccctcccaaa gggcggaggc 600 gactagattt gtaaattttc gaaacaaaaa attatttttg taaatatttt aataaaaaaa 660 tgtataaata aaaaaaattc 680 // ID SC-4 repbase; DNA; ORY; 5216 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 04-AUG-2002 (Rel. 7.07, Last updated, Version 1) XX DE Rice copia-type retrotransposon SC-4. XX KW Copia; LTR Retrotransposon; Transposable Element; KW COPIA superfamily; SC-3; SC-4. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-5216 RA Jiang N. and Wessler R.S.; RT "SC-4: a copia-type retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 36-36 (2002). XX DR [1] (Consensus) XX CC SC-4 is a Copia-type retrotransposon. It has 419bp LTRs. CC Internal region is related to SC-3. XX SQ Sequence 5216 BP; 1142 A; 1295 C; 1601 G; 1178 T; 0 other; tgttagcagt aatcttgtgt gccacggtta gttagttgat tagttatctg catgtttccg 60 ttttttttct gaataaacgc atgagctcac gtgttgtgtg atagccatcg tgtggagtct 120 gttatgaggg tatccgagtt tagctcgttg cccgcgtctt gtgctgggag ctcggatcac 180 gtcgtgtggt tgtggggatg gacgcagcta gagcatggcg tgagaagtgg tcttggtggt 240 tagttgtttc cgttgtattc gttcctttat atatggaagt aaacagaaaa gcagctgaga 300 aaagcgctgc acaaaatttg ctctgtttcc tctgttctgc gaatttgcag gtttagccac 360 agtacgcgtg cgttgtgtcg tctggtttcc tgctagcgat cgctggggaa attcctaaca 420 attggtatca gagcacggtt taggaagtgg actcgtgacc gcgcattgga aggcgtcttc 480 atgccgcgtc gtcgctcgtc gtcaccgatc gtgcgcactc ctcatgactc cggcggccgc 540 gccacgggca gcggcggggg tgaccgcggg ctggtgatcc accgcgtggt gaaagaagga 600 ggcggctcgg tgaactaccc gctgctgacc aagaccaact acaacgactg ggcgctactg 660 atgaagatca agctgcaggc tcactgcctg tgggcggcga tcgagcccga cggcgtggac 720 gtccctctgc atgaggaccg gatggctctt gacgctatct gcagtgccgt gccgccggag 780 atgattggca ccctggcgac caaagcgtcg gcccgggaag cctgggaatg catcaagaca 840 atgcgagtcg gcaacgaccg gattcgcaag gcgagtgcac agaaagtgcg cgctgagtat 900 gaatcgcttg cgttccgcgg tgacgagacc gtggaagatt tcgctctatg gctcacaacc 960 atcgtcaacc agcttgcaac cctcggtgat cctgaacctg ctgataaagt catcgaaaag 1020 taccttcggg tagctcgtcc caggttcaat caactcatct tgtctattga aactcttctc 1080 gatatctcta ctctgtccat ggaggaagtt actggcagac tgaaagccgc tgaggattct 1140 gggcaatcct cgtcgcacac cgccggtggg aagctgtacc taactgagga ggagtgggct 1200 gaacgtcaga agaagaagga tcaagaggca aagcggggtg actcgggcgg ctctggcggc 1260 cgcggcaagc gccgtggcgg gagagggcgc actggtggcg gcgggactgc gagccccgag 1320 agcacgaact ctggttcggc gcgcaaggga gacaaatgcc gaaattgcgg caaacttggg 1380 cactgggcga aggactgtag gagcaagtcc aagcgcgaag aacaggctca cgtcgcccag 1440 gaggatgaag aagagcacac cttgatgttg ctcaccggcg gccgcgttga cacggtcgac 1500 gcggcggcgc cggagggcga cacgcccaca ccgccccacc aagccgtggt ggaactcgtg 1560 gagatgaaag tatttgcagc gctcgacgac gtggctgacc atgatcccgg gcgctggatt 1620 atggattccg gcgcgtcaaa ccatatgacg ggcagcagga tggcgttcgc cgacctcgac 1680 acgaacatca ccgggaacgt gcgactcagc gatggatccg tggtccggat cgcaggacgg 1740 ggcacaattc tctttgcctg caagaatggt gagcaccgca ctctgtcgaa cacctattat 1800 cttccccgtc ttgctgccaa tattatcagc attgggcaat tggatgagac cggcttcaaa 1860 gtgctggcgg aggatggcat catgcgggtc tgggatgagc agcggcgtct gcttgcccgg 1920 atccctcgca ccccagggcg actgtacatg cttgacatca acctggcgcg cctggtctgt 1980 ttggcggcac acgccgacga agacgcgtgg cgctggcatg ctcgcctcgg gcacataaac 2040 ttcagggcgc tctgcaagat gggcaaggag gagctggtac gtggtctacc atgtttgtcg 2100 caggttgatc aggtctgtga ggcctgtctc gccgggaaac accggaggtc gccgttcccg 2160 cggcaggcac tttgccggtc tgacgagccg ctggcgctgc tacatggaga tctctgtgga 2220 ccgatcacgc cggcgacacc cagtggcaac cgctatttcc ttctactcgt cgacgactac 2280 agctggtaca tgtgggtcgc cctcctctcc accaaagatg cggcgccggc tgccatcaag 2340 cgtattcagg cggcggcaga aaggaagagt ggacgcaagc tccgcgcgtt gcggacggat 2400 cgcgggggag aattcacgtc tacacagttc gccgagtact gcgccgagct gggaatgcgg 2460 cgcgagctca cggcgcccta ctctccgcaa cagaacggcg ttgtcgagcg gcgaaaccaa 2520 tccgtggtgg gcacggcgcg gagtatgctc aaggcgaagg ggctaccagg tatgttttgg 2580 ggagaggcga taaataccgc cgtgtatctg ctcaacaggt cgtcgtccaa gggtatcggc 2640 ggcaagaccc cgtacgcgct gtggaatggc gttccgccgg ccgtgcacca tctgcgcacg 2700 tttgggtgtg tggcacacgt gaagacgacc accccgaacc tgaagaaact ggatgacagg 2760 agttgtccaa tgatctttgt cggctacgag ccggggtcca aggcgtatcg cgcctatgat 2820 ccggctactc ggcgtgttca catctcccgt gacatcgtct tcgacgaagc ggcccagtgg 2880 gactgggatg ctgaggcggc cgctgatctc gacaccgact tcgtcgttga gtacaccacg 2940 gtgtaccatc ctggctcgct gtcaggaaca cgccaagatg ctggggagcc gcctgctcga 3000 tcttcatcat cgccgcgaac gccatcagac tcaccgacag ccggccgaac accttcggtg 3060 catggcgatg cgccggcggt tgattttgtg tcgccaccaa ctggagcagc tgctaatctt 3120 gatgcagacc acgacgacgc accactccgt ttccgcacga tggacaatgt gctggggccg 3180 gccatgctgc caggtctcgc taatcgtgag gtccaggaag agctgatgat ggtgagcgga 3240 gaagaaccgg caacgttcgc tcaagctgaa cgcgacgagg attggcgtcg ggcaatgctc 3300 gatgaaatct cttcgataga ggagaacaag acctggaggc tcgtcgatct gccttcggga 3360 catcggccaa ttgggctgaa atgggtgtat aaactgaaga aagatgctca gggcgtcgtc 3420 gtcaaacaca aggcgagatt ggtggcaaag ggctacgtgc agagggctgg aattgacttt 3480 gatgaggtat tcgctcctgt tgctcgtctt gattctattc gtttgttgct cgctctcgct 3540 gcgcaggaag gttggatggt gcatcatatg gacgttaaat cagcgttcct caatggggaa 3600 ctgattgagg aggtgtatgt tgttcagcca ccggggtttg agatcgatgg acaggagaac 3660 aaggtttaca ggcttgataa ggcgttgtat ggtcttcgcc aagcacccag agcttggaac 3720 accaagctag actgcacact gaagaaactt ggcttcaagc aaagcccgtt ggagcatggg 3780 ctgtacgcgc gcggcgatgg cagtgggcga ctgctcgtcg gtgtgtatgt ggatgatctg 3840 gtaattgtcg ggggtgacag tggcatgatc aagggattca aagagcagat gaaggctgaa 3900 tttaagatga gtgatcttgg tcctttgagt ttttatcttg ggatcgaggt acatcaagaa 3960 gctggaatca tcactttaaa gcaagcagcg tatgcgtcgc gtattgtgga gaaggctggg 4020 ctcaccggct gcaacccctg tgcaacaccg atggaaccat gtctaaagct gagcaaggaa 4080 agtgcaggat cgctagttga tgcgacagaa tacagaagtc tagtgggaag cttgcgctat 4140 ctggtgaaca cccgaccaga ccttgcatat tcggttggtt atgtcagtcg tttcatggag 4200 aaacccacgg acgaacactt ggcggcagtg aagcgcatca taaggtatgt tgctggtacc 4260 attcatcttg ggtgccgcta tgtgaaggaa ggtgaaggag gactgcaggg ttacagtgac 4320 agtgatatgg ctggagacat tgacactcgc aagagcacca caggagtaat tttctttctc 4380 ggcaaaaatc ctgttagctg gcagtctcaa aaacagagag ttgtagcact ctcctcctgt 4440 gaatctgagt atattgcagc tgcaacagct gcatgccagg gcatttggct tgcccggctc 4500 ctcggtgacc tcaggaatgc agcaactgaa gtcgtcgatc tcagggtgga caaccaatcc 4560 gctctggccc tgatgaagaa ccctgttttt cacgatcgaa gtaagcacat tcaaacaaaa 4620 tttcatttca ttcgtgaagc cgtggagaat ggggaaatca caccgagtta catcggcata 4680 gaagggcaac ttgcagatat cctgacgaag ccgctttctc gaatcaagtt tcaggagctg 4740 cgggaacaaa ttggtatgtt tcctgtataa tcggcacatc aagcttaggg agagttttgt 4800 tagcagtaat cttgtgtgcc acggttagtt agttgattag ttatctgcat gtttccgttt 4860 ttttctgaat aaacgcatga gctcacgtgt tgtgtgatag ccatcgtgtg gagtctgtta 4920 tgagggtatc cgagtttagc tcgttgcccg cgtcttgtgc tgggagctcg gatcacgtcg 4980 tgtggttgtg gggatggacg cagctagagc atggcgtgag aagtggtctt ggtggttagt 5040 tgtttccgtt gtattcgttc ctttatatat gtaagtaaac agaaaagcag ctgagaaaag 5100 cgctgcacaa aatttgctct gtttcctctg ttctgcgaat ttgcaggctt agccacagta 5160 cgcatgcgtt gtgtcgtctg gtttcctgct agcgatcgct ggggaaattc ctaaca 5216 // ID SZ-66LTR repbase; DNA; ORY; 1223 BP. XX AC . XX DT 11-NOV-2002 (Rel. 7.1, Created) DT 11-NOV-2002 (Rel. 7.1, Last updated, Version 1) XX DE Rice putative long terminal repeat SZ-66LTR - a consensus. XX KW Long terminal repeat; SZ-66LTR; retrotransposon. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-1223 RA Jurka J. and Drazkiewicz A.; RT "SZ-66LTR: a putative LTR from Oryza sativa."; RL Repbase Reports 2(10), 28-28 (2002). XX DR [1] (Consensus) XX SQ Sequence 1223 BP; 351 A; 275 C; 253 G; 344 T; 0 other; tgttggtatt tcttacggtc acagattaaa atccgcaagc gcacggaata taccgatgta 60 gcacttcacc tacggagtat tccaaagggt atcgatttcc acagggaacg tgtgtgtggt 120 cagctcttct tcaggttcat ccaaggacac aaagctaaag ataggcaaag gatagagagg 180 atttactagt gagaaacagt gtctacggaa agcttaagtt taatcctaac gcgatacttc 240 aggcactggc cagcccgctg ctcccagata tcgctctact acgtacccgg acagggagga 300 cttaagtgtt cttgagggct gtcaccacct ctacacccac ctcaaaccta ctgtgggata 360 cgcagcaatc aactggaaat taattaccta gacaccacgt ctacgcaatt aataacttac 420 tttagtgttt ataacacact aaagcaatca ctatatttta atggattata gtgaacaatg 480 atcccgtatg ctaattagga actaaccaag aaataattct cactaagtaa atcttaatta 540 ctcaagaaag atatttctat taaagtcaga gtaattaaac agagtaaaag aaataaggag 600 aggattaccg acaactccgg aattcctccg acttcttcta ctctactctc tccctattct 660 agtatacaat aaagtacaat agagcctctt ataattcagc tcaagcttgg agtgtgtgtg 720 tgaagtgaga gaggtgaggt ctttttatag ggtaaggtat gacggttgga gaatgcgaaa 780 tgtccgaagt accctccaac cgccatcagg aagtcatctg ggacgtccat gccaaacccc 840 gggatgaacg gctacgatcg gggttcggcc gaccaaccag gggttcggcc gaaccctggg 900 ctggcccccc tggcccggtc ttcggcctgg acactcccct tttggtcccc ctttatccat 960 ttctatgagt tttgggccca ttttctggtg ttttaatgag tttttgggcc caaaactcct 1020 tgtatggata cggaagtatg attctccttc actttagtgt atatttcctc ccaactttgg 1080 tggtttatca cctgcataca aatatacacc aacacttgtg gaaattgtta gaaataaacc 1140 ctaccactat gttggatgtt ttattattta tgattttatg caggtattga cggtataaat 1200 ttggcattta acagccgtca aca 1223 // ID RETRO1_I repbase; DNA; ORY; 6156 BP. XX AC AP002816; XX DT 06-NOV-2002 (Rel. 1.1, Created) DT 06-NOV-2002 (Rel. 1.1, Last updated, Version 1) XX DE Oryza sativa retrotransposon RETRO1_I, internal region. XX KW LTR retrotransposon; RETRO1_I. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-6156 RA Sasaki T., Matsumoto T. and Yamamoto K.; RT "Direct submission."; RL Direct Submission to Genbank (26-JUL-2000). XX DR Genbank; AP002816; Positions 10063 16218. XX SQ Sequence 6156 BP; 1173 A; 1853 C; 1882 G; 1248 T; 0 other; tcaggggtag aagcgacgaa ggtgttcaat gttccacggg tttggcagct ccgtgccgtc 60 gcccgtggcc agccgtaccg agcccggccg ggggacaccg accactcgat acggaccctc 120 ccacattggt gagagtttgc tcaatccagc acgcgtttga acgcggcgta ggacgaggtc 180 gtcgacgcag agtgatcggg cccggacgtg gcgctgatgg tagcgccgca ggctctgctg 240 gtagcgcgca gctcggaggg ccgcgcgccg ccttcgctct tccaagtagt cgaggtcatc 300 tctacgaagc tgatcttgat cagcctcgca gtacatggtg gcccgaggag acctcagggt 360 aagctcagat gggagaaccg cttctgcgcc gtagacgagg aagaaaggcg tttccccggt 420 cgctcggctt ggtgtggttc ggttcgccca gagcaccgct ggcaactcct cgatccatga 480 atcgccgtgc ttcttgagaa tattgaaggt cttggtttta aggcctttga ggatttctgc 540 attggcgcgc tccacttggc cattgcttct ggggtgggca ggtgaggcga agcagagctt 600 gatgcccatg tcttcgaagt agtcgccgaa gagttcacta gtgaattggg tgccattatc 660 cgtaataata cggttaggca ctccaaaacg ggccgtgatg cccttaataa atttaagagc 720 agagtgctta tcgatcttga caaccggata agcctcgggc cacttagtga acttgtcgat 780 cgcaacatac agatactcaa acccgcccgg ggcccgtttg aacggcccca ggatatcaag 840 cccccagaca gcaaatggcc atgacagtgg tatgatctgc agggcctggg ccggctgatg 900 aatttgcttg gcgtggaact gacacgctct gcatcgccgg accagatcga ctgcgtcatt 960 gagagctgtc ggccaataaa atccttgacg aaaggccttg ccaaccaggg tacgcgaggc 1020 ggaatgggct ccgcactcgc cctcatggat atctgcaaga agctcaacgc cttgttcctg 1080 aggaatgcac ttcaggagga ttccgttagc cgcgcgccga tagagggtcc cttctaccag 1140 cacatagcgt ttggaaatgc gttgtacgcg ttcactccct tcgcggtcct caggtagagt 1200 cttatctgtg aggtatgttt ggatctcaga gatccaagca atcaatctaa gggagcttgg 1260 agcgctccct tcgggtcccg aggcctggac tccgacgggc ctcgggggcc ggtcaggcgc 1320 atccgtctcc cctaagggat cgggtcgcgc cgacggctgg gtaagccttt cttcaaaggc 1380 gcccggtggg gtctgggctc gcgaggacgc gagccgtgag agttcgtcgg ctatcatgtt 1440 atcccgcctg ggcacatgcc gaagctctat cccgtcaaaa tggcgctcca tacgccgtac 1500 ttggcgcacg taggcgtcca tctgcggatc agagcaccgg tactccttac agacttggtt 1560 aacaaccagc tgagagtcgc ctaacaccag gaggcggcgg atccccagcc cggctgccac 1620 cctgagcccg gcaaggagtc cctcgtactc tgccatatta ttagtcgctc gaaagtcgag 1680 acggaccaag tatctgagga cgtctccgtt tggagaggtc aacgtgaccc ctgcaccggc 1740 gccctgaaga gacagagaac cgtcgaattg catcacccag tgggcggcat gaggcagctg 1800 tgaggggttc gtgctagcct cgggcattga gacggtctct ggagccgggg tccactctgc 1860 cacaaaatcg gcgagggcct ggctcttgat agcgtggcgt ggttcaaagt gcagatcgaa 1920 ctcagaaagc tcgattgccc attttaccac tcgtcctgta ccctctcgat tatgcaagat 1980 ttgaccgagg gggtaagacg taaccacagt gacccgatgc gcctggaaat aatggcgtag 2040 tttcctcgag gccatcagaa tagcataaag catcttctgg gcctgtgggt atcgggtctt 2100 ggcgtcccgg agggcctcac taacaaagta gacaggccgc tgcacccttc ggcggggccg 2160 atcctctttg ctaggggccg aacccccggg gcgttcttcg tccaagtggc ccctcggggc 2220 gcactcgtct tctgtgccga tgacctcggg gtcggaggac gacaggagca gccttcccac 2280 agtggcctcg gggccgtcct gggggtcggg ggctcctggc atcgtcggac aagcgggcaa 2340 agggccaact ccggtcgtca ggggcctctg gcctccgttc ggctcggggg cctcttctcc 2400 ctgctctttc ccgggtcgac tcagcacagg gttagcctcg gggtcaaagg gcgctaagtg 2460 cggccttccc gcagtggcct cggggccttc ctgagggtcg ggggcacccg gcaccgtctg 2520 acaagcgggc ggagggccga ctccggtcgt cgggggcctt aggccaccgt tcgactcggg 2580 ggcctctcct ccctgcctgc tcccaggcca aatcggcaca gagtgggggt gcgcagaatg 2640 agaattgtcc tcatcgcgct ccacaaccaa cgctgcacta actacttggg gggtcgctgc 2700 taagtaaagt agcagggact catttggctc cggggcgact agaaccgggg gagagctgag 2760 atatgccttt aattgagtaa gggcatgttc agcttcctcc gtccaagtga acggccccga 2820 gcgcttgagg agcttaaaca agggtagcgc cttctctccc agccttgata tgaaacgact 2880 tagggcggcc atgcaaccgg tgacgcattg cacatcccta agtttgctgg gggggcgcat 2940 ccgctcgata gctcgaatct tctcggggtt ggcctcaatg cctcgggcag agaccaagaa 3000 cccgagaagc ttgcccgcag gtacaccaaa cacacactta tcggggttca gctttatgcg 3060 ggcggagcgg aggttctcaa aagtttccgc tagatctgaa agtaaagttt cttggttgcg 3120 cgtttttaca accaagtcat cgacatacgc ctcaacatta cgtcctattt ggctacccaa 3180 agaaattcga gtagtacgct gaaaagtggg acctgcattc tttaacccga agggcattga 3240 tgtataacaa taggttccta cgggggtaat gaacgcagtt ttttcctcat cctccctagc 3300 catgcgaatc tgatgataac cagagtatgc atctagaaaa cacaaaaggt cgcaccccgc 3360 agtggagtcg acaatctgat ctatgcgagg cagggggtaa gggtccttag gacatgcctt 3420 gttaaggtcg gtgtagtcga tgcacatccg aagcttgccg ttcgccttgg ggacgaccac 3480 cgggttcgcc agccactccg gatggatgac ttcacggatg aatccggcct ccagaagtct 3540 cgccacctcc tcgcggatga aggcttgacg ttccggggcc tgccgccgca ctttctgccg 3600 gaccggcctt gcgcccggcc gcacggcgag acagtgctca atcacctccc tggggacccc 3660 gggcatgtcc gctggtctcc atgcgaagac atcagcgttt gcccgcagga aggagacgag 3720 cgcgtcttcc tatttgccat ccagaagacc accgatccgt gtggtcttgg atgggccgtc 3780 gcccaaggca acctccttga ccgggacctc gtcgcatgtg gccatccgct gcctcggggc 3840 ggtgggggca gaggggccaa gcctctcgtc accaccctcg ggcttggacg cagcagcgag 3900 acggtcagcg cgctgctcca tgcaagcgag cgcgacttta agatcgccat ggacagagat 3960 ggggccaccg gggcccggca tcttcatctg gaggtaggcg tagtggaccg ccgccatgaa 4020 cttcaccaac gcgggtctcc ctaggaccgc gttgtagggc agactgaggt ccgccacatc 4080 gaagctcacc cgctccgtgc ggaagttggc gggtccaccg aaggtgaccg gtaggtcgat 4140 gtgacctaat ggccacgtgt gccccggcgt cacaccgatg atcggttgag acggctggag 4200 caccatcccc ggggccttga tagcatcaaa ggccgcgggg gaaagaatgt tgagagccgc 4260 tcctccatct atgaggacac gtcccaactt cacgttgcag atggtggggg aaaccaccat 4320 cgcaacctgc cctccccggg caatgcacgg tgggtggtcg gtctggtcga aagtgagagc 4380 gacctccgac caccgcgccc gacgcatcgc ctcatgagta ggggccatgg tcagaagctc 4440 tcgcttcata gccttgaagc tccggcgaga gacatgagca cacgctcctc catcgacggt 4500 ggcaatggtg gccccaggtt cttggaaacc taggtcatca tcaccatcat cgttgtcaac 4560 agcgggggcc ttctgcttgg cctcacttcg ccgtttgccg gaaggaaccg ccggggactt 4620 gccctcacgg cgttcctgcc tcctgtcctc ctcccacttc ctcgttcgct cagccaaatt 4680 tttgactgcg cgacagtccg cgagatcgtg gagggaggta ttgtggacgg agcaccacct 4740 gccggcgggg cgctccttgc tgggagtacc agcctctttc tttttgtcgc tcgcaggcct 4800 cccctttcgg gtggcccgcg gagcgccctc gacggcgagg acatgaccct cgtcgccgga 4860 acggtccgac ctcttcttcc tcctcctgtc acgccgccct gtctgagcgg cggatccggg 4920 ggcggccgaa gctgctactc cggaaccgga ggagttccat gtccacgctt cctccttacg 4980 agccactcgg tccgcaagct gaaaaagctc cgcggtagtc tggggctctt tggaagcaat 5040 cttttcgagc atgcggttgt gccgcacgcc ccccctgaac gcgtagatca ccgcgtgtgc 5100 agggatgcat ggtatagtat tgcggacttg gcaaaaccgc tgaatgtacg agcgaagcga 5160 ctcatcatcg ccccgctgta ctgcatgcaa gtccgcttct tcgcctgggc gcggatatgt 5220 gccttggaag ttcatggtga actgttggca caaatcttcc caggagtgga ccgacgcggg 5280 tggcaggttc attagccaac cccgcgcctg tccttttagg gccatgggaa agaaattcgc 5340 catgaccctg tcgtcacccc cagcggcctc gatcccggtc gtatagacct ggagaaactc 5400 ggtggggttg acgctcccat cgtacttctc agtgatggtg ggccggaacc ttgggggcca 5460 acggacattc cgaagactcg ccacaaaggc tctacagcca acaccaccag ccgggggcac 5520 ggagggctgg tcctcacgtc catgtcgagg tgacactctg gacgaggagg caccctccgt 5580 tgcacggggg gtacgccggc tattacgccg gcgctcgatg ttgaggcgtg catccggctc 5640 cccatgctga tccttccgag tcgaaggtgt cgacgaggga gtagcagccg aatgacgtgc 5700 agccgccgcc gctcgccgcg ccctccgcct tgacgacacg gagccggtgg tagcggcgcc 5760 ggaggtcttg gtggtggcgg accgtccacc agcacccaag cgctgctgag ccgtcatgac 5820 caagttggcc acgtcttcta gccatcgttg ggctggagac tccgggtcat ggacgacagg 5880 cgggtgtcgt aggagcgcgc cagcagcctg aagcgcgccc tgaggcgtgc tgccatcgcc 5940 gtagacgagg aggcgacgct ccccatctcg ccgttctcct gcatcacctg cggctggtga 6000 cgccgcggat ttgtcgaccc tctcaagcgc ctccccctgc ttagggcttt ggcgcggagg 6060 aggtggagga gtacgagctc gacggcgtgg attcggctcc ccatcgtcgc cgcttacact 6120 cggcgagagg tcgtgcgttt ttccttgctc agccat 6156 // ID GYPSY-A repbase; DNA; ORY; 8950 BP. XX AC AF172282; XX DT 09-SEP-2002 (Rel. 7.08, Created) DT 09-SEP-2002 (Rel. 7.08, Last updated, Version 1) XX DE Rice gypsy-type retrotransposon GYPSY-A. XX KW Gypsy; LTR Retrotransposon; Transposable Element; GYPSY-A; KW GYPSY superfamily. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-8950 RA Tarchini R., Biddle P., Wineland R., Tingey S. and Rafalski A.; RT "The complete sequence of 340 kb of DNA around the rice Adh1-adh2 RT region reveals interrupted colinearity with maize chromosome 4."; RL Plant Cell 12(3), 381-391 (2000). XX DR Genbank; AF172282; Positions 25898 34850. XX SQ Sequence 8950 BP; 1866 A; 2637 C; 2101 G; 2346 T; 0 other; tgtaacgccc cgattttcgt tcgggattaa aaatcattaa ataatgcatt ttctagaaat 60 taaataaaag ttaaatcaat ttaatcaagt gaaataatgg gagaattaaa attttccctt 120 aaaaatcaat ggccgggaat attttgtaat attctttgtg ccctaatgta ctctccggaa 180 ttttccgtga attttcggag ctcgagaaat agttttaaag tcacaaagtt cattaaacta 240 atttaaataa aaagaaaaca aaataaactt cccctctttg tctttgggct cggcccattc 300 tcccttccct ccttccctcc tttcttcgcg tgggtcggcc cagctcggct ccccctcctc 360 caagtccaca taacccccag cctcctccct cctcccctcg ccgacaggtg gacccgaggc 420 cccacctgtc atcgcccccc caaccgtctc ctcctctctc ctttcccccg agccgccgac 480 aggtgggccc cacctgtcag ggccatccct aacctccggc tccctcagcc gaaaccgccg 540 ccacggtctc cccacgtcgc cgccgattcc gcccacctcc tccaccccgc gcgcgcgctc 600 gtccgtggga cctcgccgct cacgtccgcg ccgttccccc actctccccg caaaatccgg 660 ccacgtcgcc gcctcccgcg tctctctctc ccccacgacg ccgccccact tcccctcgaa 720 atccgccgct ccccggcttc gccgtcgctc cctcggtcta taaaaagcat ccacgagctc 780 ccttctctct tttccccaat ttccccgagc tctcccgtgc cacaaatcgc gtccgcaccg 840 cgagcccggg cgccgccgct ttccggcgag ctccggccgt cgctcctctc cgccctagcc 900 accgccgcgt cgcgccgccg ccgccgctag catcgccacg ccttgctcta ccccggcccc 960 cactccatct ccctcctcca ccgccggaac caccttccca tcgcgaggcc gagccactac 1020 cgccacacac cgccttcagt cggccgcgtc gcgccgccgc gccgcaccat cgccgccgtc 1080 gcgctcaccg agcccgcccg cacctcggcc gccgcttcat tgccgcgaat caccgccgga 1140 gccttttttt ctcctcgcgc gccggtgaga ccctctctcc cctccgtctc cggccggcaa 1200 ttcaagccgc catggtcgcc ttcccttccc taacccctct atgctctctc ctagggtgcc 1260 gccgccgccc gttcgcgcct cggcatcacc ggtcgtcgcc gccgttttct cccttcgcgc 1320 cggccgccgt gttcgccggt gaggaatccc ctctcctcct tcctttcctc tctctcccat 1380 gagcgccgcc gtcctccgcg cgtgcgccgt cgtcttcggc cgccgccgcc gctttcgcgc 1440 cggccgccgc cgtctcccgc gctgccggtc accgccggtg accgcgcgtg ccgccgccgg 1500 tcgccatggc cgccggtcgg ctttgaggcc gagccgagcc cggccggcgc ctccctcgcc 1560 tccccttgag ccactgcccg gtggggccca ccagccggtg gaccacccct ccctctcctt 1620 tcccctatag agccgctgcc agtggggccc gcttgccggc cgccccttgc tgacgtcagc 1680 gagatccttt tcctttgtaa aaataattaa taattgcgca ataaatcgag tttaattcta 1740 gaaattcatt taaatggctc aaaacttcta aaattcatat ctaattcatt cgaactccga 1800 attgagccat tcaacttgca aaattcatct aaaattgagc tctacatgtt tgtttagttt 1860 ttatgtactg ttttcttggt ctttattaga gtttttcctc gttttgcgtg ccagcgtgta 1920 gtttccgtcg tttcggaagt ccgcggtcgc gaggaaaaga gttcggaaga tcaaagtgaa 1980 gaagcaaggc aagtcacaca ttccctttga gcatgttgat cctaatttac aaatgtttta 2040 ccgtttgcaa ataaatatgc atgttttgct aattacacgg gatcagggtt tacctatctg 2100 ctcgcttgtg ccatgtttac ttgatatcta ttctttggca accttgggta atgaatcgac 2160 tagctcatgt tacttatgtg acctagctag aactatatgc ttagccatgc ttaattacca 2220 ctagctcagt tgatgggata attgcagtat tagacattct agtatcttgt tgagctgcgt 2280 gctcgagaca tctggccatg cttcatggtc gtaattatcc aactaaaatg caactgaatg 2340 gtgggctgtg ggtgcatggt tttgctggtc gcacccatgg caattaagga ccggttcgcg 2400 ggatgccctg gaagaactta tcgtacttac cacaagccag cgtgggcaac ggctggactt 2460 gtagtgtatc tttcctctag tcgacgcatc caggcaaggg tgggcgtgat ggagcggggc 2520 gggccctgcg acggcctttg tcgcttccgg attcacctag gcacgagagg ggactgcccg 2580 ttgcccgctg ggaacggggg tgaaacctga ggtgtggtgt gcttggctag agggggttat 2640 gcgaagggtc ctgtcacggc ctctttccgg tatgtcgtgg tggcatgtcg gcgcacggaa 2700 acgtgtcgtg gggctgtgtc ttgtgggtac agttgtacac ctctgatcag agtaaaacta 2760 ttcgaatagc cgtgcccgcg gttatgggcg gtcgaccaga ttcaccgtga ttagtcccat 2820 cttaataaat cgacccaatg cactgtagtt taggtgggtt ggttgggcct gttcaacgtg 2880 gtgtagcgtt gatcagtgga gatttaatgt tactttaatt actcaacagt tttactgttt 2940 tgctcaataa aatgttttac aaccgccttt atgcaaatag ccacaaaccg tccttgtgtt 3000 ccccttgcac gtctgcatcg ttggtgtggc ttgctgagta cggtggttgt actcagtctt 3060 gctattattc ccccttttca gaagtgtagt gcttctgagc tgaagacgaa gttagaggac 3120 caaggctcag accccagttg agttttgcct gtggagtgga gctgaagccc cgctaggatc 3180 gcctttttcc gctgctgctg tttttgtttc ggtgtgagga ctaagtgcct tttctgtaag 3240 tattttacgc tttatttacg tttggaactg tatattactt gtcgttttgt gtaccctggc 3300 tggtcctgga cagggattta atacacaaaa tagtctggaa atttgggcta aatttctggg 3360 cgtgacaaag tggtatcaga gccaacttga ctgtaggttg agccaaatgg tcaaacccta 3420 aggacaagtt ttctgaaaac cctatttgca aattgtctcc tctcgccctt cggcatttct 3480 ttgtcaaacg gtttttcaaa attctcctcc cagtctctcc aattcttgta gttgtcacac 3540 ctagaggacc agctgtcagc ttcatgtctg ttcggaagtc aagtcaattc gagcctcaag 3600 cttcgtgcaa ggagcgagaa gatcagttca gagtcgtcgt tctgcgaaga tcaagtgaag 3660 ttttctcgga gatgacctaa acccaatctt tcccagaaga gtagttccgt tagctttcta 3720 gatcgtgtgt tgtttgcttg tgtgtagggg tatggtttgc atcattggtg gggatgcgac 3780 catactaggt tgtttgctta agcaacttga acaataaaag tgtactcaca acagatcagt 3840 aggcaagtgg tttagtacct tatctttagc gacccctctc ttccacctct cttccgtcct 3900 agcagcagat ggtcagtgtc agagataaga tcaattaaag ccacagatca atggtttagt 3960 tgaaagctgc aaggtgcccc aacgccagat gaaccctgct catgatcaac ttttggtgtc 4020 caagatcaga agatgggtgt attgatgcag gagatgcaaa gctcgatgca aggtcgaatg 4080 tagcggaagc aactctagca gtagtgtgtt gcagtcagag tcagtggatc agttcaagac 4140 aacaagctac cagctgagtc ggagcacctc gctctggtca gatcctggct agccaagatc 4200 taatgatgga tgtgtcagat gttgataccg caaccgcaga gtccaaagca gcagatgcaa 4260 cgacaatgtc tccaacaaca agtacaagct cagatgcaag ctggaattag gatcagagcc 4320 aaagctagtt tgttttcaaa gaggaagcac ccacaacctc agatagtacg ccactaagtc 4380 ctcagcaaat cagcacagct aagccaccac caatcccagg aataacaagt gctacctata 4440 gtggttatgg tttacaaggt cagttcttgc aaggttgttc aacggcaagg cgttagcgtc 4500 atcaagacaa cagctctatt cgcagcaccc cagttcctca agttgtgtca attccaatgc 4560 gagtcggtca gtttagtttt gagatatcaa ctacacaacc catttaggtg gacgacaccg 4620 aagtcaggtc agaagaagga cagtcatgcc agcagttagt actgatggga aagtcagtta 4680 agagttagta agatcaggag ctaaatgaga atttctttta tgtggaattt cctatcatca 4740 actaagggtt aagttccaaa tcttgtcggg gtgaaagtgc atcgccattg cttcaatttg 4800 atggaccgat gaagttttca gttttcaaag tcagggctct ttgtaaatca gagaagtgtt 4860 ggctatattt gaaggacaac agttcaactg atcccagcca tgcggaagta agactactcc 4920 ctgtaagggg ggtaggtctc ggggaagagt tttgcctcac ttcgtcgctg ttttagttga 4980 aggttcaacc agtgccgcaa tcagggtagc acttgaagaa gtatgttgca aggtatcaga 5040 agaattaagc cgatccccga gcaaccgatt gaattctaag gtacacccat gaggccagtt 5100 caaccgctta gcttagacag gtcaagcaga cggttgcagt tcagacaaaa gacaggtcaa 5160 gcaggttttc ctggaattac ttgttatttg aattgggacc agtcgaagcg gacatagggt 5220 aaatgattta taaatgccag attccatttt catcctctta tagccagcgt ggtgaattct 5280 caggttacca aaattgccaa cctcaacagt tcagtccaag ataagtaagt ttcaggagta 5340 tccgcagttc tggcctaggt cagttcaagc agaaccagtc ggtccagttt tggcaaagca 5400 aaggaacaga aaggtcgaat ccagccagtg caatcgtgca ggtttgatca accagtcaat 5460 caatcagttc gaagcagaat gtggcagttc aatgtgcaga tcagtcagac cgctgaccag 5520 caccggcttt ctttctagcc atcccagaat ctcgggacga gattcctgta aggggggtag 5580 atttgtaacg ccccgatttt cgttcgggat taaaaatcat taaataatgc attttctaga 5640 aattaaataa aagttaaatc aatttaatca agtgaaataa tgggagaatt aaaattttcc 5700 cttaaaaatc aatggccggg aatattttgt aatattcttt gtgccctaat gtactctccg 5760 gaattttccg tgaattttcg gagctcgaga aatagtttta aagtcacaaa gttcattaaa 5820 ctaatttaaa taaaaagaaa acaaaataaa cttcccctct ttgtctttgg gctcggccca 5880 ttctcccttc cctccttccc tcctttcttc gcgtgggtcg gcccagctcg gctccccctc 5940 ctccaagtcc acataacccc cagcctcctc cctcctcccc tcgccgacag gtggacccga 6000 ggccccacct gtcatcgccc ccccaaccgt ctcctcctct ctcctttccc ccgagccgcc 6060 gacaggtggg ccccacctgt cagggccatc cctaacctcc ggctccctca gccgaaaccg 6120 ccgccacggt ctccccacgt cgccgccgat tccgcccacc tcctccaccc cgcgcgcgcg 6180 ctcgtccgtg ggacctcgcc gctcacgtcc gcgccgttcc cccactctcc ccgcaaaatc 6240 cggccacgtc gccgcctccc gcgtctctct ctcccccacg acgccgcccc acttcccctc 6300 gaaatccgcc gctccccggc ttcgccgtcg ctccctcggt ctataaaaag catccacgag 6360 ctcccttctc tcttttcccc aatttccccg agctctcccg tgccacaaat cgcgtccgca 6420 ccgcgagccc gggcgccgcc gctttccggc gagctccggc cgtcgctcct ctccgcccta 6480 gccaccgccg cgtcgcgccg ccgccgccgc tagcatcgcc acgccttgct ctaccccggc 6540 ccccactcca tctccctcct ccaccgccgg aaccaccttc ccatcgcgag gccgagccac 6600 taccgccaca caccgccttc agtcggccgc gtcgcgccgc cgcgccgcac catcgccgcc 6660 gtcgcgctca ccgagcccgc ccgcacctcg gccgccgctt cattgccgcg aatcaccgcc 6720 ggagcctttt tttctcctcg cgcgccggtg agaccctctc tcccctccgt ctccggccgg 6780 caattcaagc cgccatggtc gccttccctt ccctaacccc tctatgctct ctcctagggt 6840 gccgccgccg cccgttcgcg cctcggcatc accggtcgtc gccgccgttt tctcccttcg 6900 cgccggccgc cgtgttcgcc ggtgaggaat cccctctcct ccttcctttc ctctctctcc 6960 catgagcgcc gccgtcctcc gcgcgtgcgc cgtcgtcttc ggccgccgcc gccgctttcg 7020 cgccggccgc cgccgtctcc cgcgctgccg gtcaccgccg gtgaccgcgc gtgccgccgc 7080 cggtcgccat ggccgccggt cggctttgag gccgagccga gcccggccgg cgcctccctc 7140 gcctcccctt gagccactgc ccggtggggc ccaccagccg gtggaccacc cctccctctc 7200 ctttccccta tagagccgct gccagtgggg cccgcttgcc ggccgcccct tgctgacgtc 7260 agcgagatcc ttttcctttg taaaaataat taataattgc gcaataaatc gagtttaatt 7320 ctagaaattc atttaaatgg ctcaaaactt ctaaaattca tatctaattc attcgaactc 7380 cgaattgagc cattcaactt gcaaaattca tctaaaattg agctctacat gtttgtttag 7440 tttttatgta ctgttttctt ggtctttatt agagtttttc ctcgttttgc gtgccagcgt 7500 gtagtttccg tcgtttcgga agtccgcggt cgcgaggaaa agagttcgga agatcaaagt 7560 gaagaagcaa ggcaagtcac acattccctt tgagcatgtt gatcctaatt tacaaatgtt 7620 ttaccgtttg caaataaata tgcatgtttt gctaattaca cgggatcagg gtttacctat 7680 ctgctcgctt gtgccatgtt tacttgatat ctattctttg gcaaccttgg gtaatgaatc 7740 gactagctca tgttacttat gtgacctagc tagaactata tgcttagcca tgcttaatta 7800 ccactagctc agttgatggg ataattgcag tattagacat tctagtatct tgttgagctg 7860 cgtgctcgag acatctggcc atgcttcatg gtcgtaatta tccaactaaa atgcaactga 7920 atggtgggct gtgggtgcat ggttttgctg gtcgcaccca tggcaattaa ggaccggttc 7980 gcgggatgcc ctggaagaac ttatcgtact taccacaagc cagcgtgggc aacggctgga 8040 cttgtagtgt atctttcctc tagtcgacgc atccaggcaa gggtgggcgt gatggagcgg 8100 ggcgggccct gcgacggcct ctgtcgcttc cggattcacc taggcacgag aggggactgc 8160 ccgttgcccg ctgggaacgg gggtgaaacc tgaggtgtgg tgtgcttggc tagagggggt 8220 tatgcgaagg gtcctgtcac ggcctctttc cggtatgtcg tggtggcatg tcggcgcacg 8280 gaaacgtgtc gtggggctgt gtcttgtggg tacagttgta cacctctgat cagagtaaaa 8340 ctattcgaat agccgtgccc gcggttatgg gcggtcgacc agattcaccg tgattagtcc 8400 catcttaata aatcgaccca atgcactgta gtttaggtgg gttggttggg cctgttcaac 8460 gtggtgtagc gttgatcagt ggagatttaa tgttacttta attactcaac agttttactg 8520 ttttgctcaa taaaatgttt tacaaccgcc tttatgcaaa tagccacaaa ccgtccttgt 8580 gttccccttg cacgtctgca tcgttggtgt ggcttgctga gtacggtggt tgtactcagt 8640 cttgctatta ttcccccttt tcagaagtgt agtgcttctg agctgaagac gaagttagag 8700 gaccaaggct cagaccccag ttgagttttg cctgtggagt ggagctgaag ccccgctagg 8760 atcgcctttt tccgctgctg ctgtttttgt ttcggtgtga ggactaagtg ccttttctgt 8820 aagtatttta cgctttattt acgtttggaa ctgtatatta cttgtcgttt tgtgtaccct 8880 ggctggtcct ggacagggat ttaatacaca aaatagtctg gaaatttggg ctaaatttct 8940 gggcgtgaca 8950 // ID RPO_OS repbase; DNA; ORY; 1992 BP. XX AC . XX DT 20-MAY-2005 (Rel. 10.05, Created) DT 31-JUL-2005 (Rel. 10.05, Last updated, Version 2) XX DE Repetitive element from Oryza sativa - a consensus. XX KW Repetitive element; RPO_OS. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-1992 RA Jurka J.; RT "Putative retroelement from Oryza sativa - a consensus RT sequence."; RL Repbase Reports 5(5), 132-132 (2005). XX DR [1] (Consensus) XX CC This is an unclassified element. It contains a minisatellite-like CC tail and is not flanked by any reognizable flanking repeats. It CC could be a SINE element or an abundant retropseudogene derived CC from an unknown RNA. The youngest elements are 95% identical to CC consensus. One notable characteristics of this element is its CC A-richness, shared with L1 elements. However, it cannot be ruled CC out that it represents a non-autonomous helitron due to the CC hairpin-like structure near its 3'-end (CCGCGCAATTGCGCGG). XX SQ Sequence 1992 BP; 913 A; 244 C; 368 G; 467 T; 0 other; taatctatct attatattat taaaacagct ttgaaaggag gcaccacgtt cgctgtgggg 60 gctagaaatt cccacattaa tcggagaaaa agaaaaaaaa aaaaggagag tccaagtaga 120 aatacaattt aaaaatagct gaaattcgga attaaaaata agcaatattg aaagaagttt 180 ccatataaga acccaatacg agattaatca aaattcgaaa taaaaataaa ataaaatcca 240 aaattagaaa aggaaaggag agtccaagta gaaatacaat ttaaaaatag ctgaaattcg 300 gaattaaaaa taagcaatat tgaaagaagt ttccatataa gaacccaata cgagattaat 360 caaaattcga aataaaaata aaataaaatc caaaattaga aaaggaaagg agagtccaag 420 taggaataca atttaaaaat agctgaaatt cggaattaaa aataaggaat attaaaagaa 480 gagtccatat aagaacccaa tacgagatta attaaaattc ggaataaaaa taaaaataaa 540 tccgaaatta gcaaaagaaa ataaaagaag agttcaagta ggaatacaat ttaaaattag 600 ctgaaattcg gaattaaaaa taagcaatat tgaaagaaga atccatataa gaacccaata 660 cgagattaat taaaatttag aataaaaaat aaaataatat ccaaaattag aaaaattaaa 720 agagagttca agtaggaata caattttgaa acaactgaaa ttgaaaataa aaaaataaaa 780 acattaaaag aacacaatac ggtattaact aattttttta aaaaaataaa ttctgaaatt 840 agaaaaagaa aaataagatt tcaattagga atacaattta taaataacta aaatttgtga 900 taaaaataaa gactattgaa agaaaagacc atctaaaaca catgacgaga taaattaagt 960 aacatgccta taaaggagta gagtggtggc ggttgatacg acatataaaa attgttaata 1020 aaacaccaaa tagaatccta atgacgatta aaaggaggga cgtcaggcag gccgtgaagc 1080 aaacgagtaa ggcggttgcc gggacttcta gaaagtaaaa aaaataaacc ccattgataa 1140 tcatattcga tttttaaaat ctcaatgaca ataaaaagga gaagcagcgg gcggggtgta 1200 taagagtata gttgcagagc cgccgacggt tgacgggact tctagaaaat aaaaaatgaa 1260 ttccaacgat agttatgttc gatttttaga atcacaatga caataaagag taggcggcgg 1320 acgggctgta gaggggcata gtggcatcgt ttgatgggac ttctaaaaat tataaaaaaa 1380 ataaaactac aagtccaatt tttaaaggtt cggaacttct aaaaagtaaa aaaaaaacca 1440 atgataatca tgttcgattt taaaatctca atgacaataa agaagggagg cagcgggcga 1500 gccgtagagg agtacaatgg caaagccgct gacggtttgg cgggacttct agaaagtaaa 1560 aaatgaaccc aaacgataat tatgttcgat ttttaaaatc tcaatgacaa taaagagaag 1620 agacagtgga cgggccgtag aggagtataa tggcaacgtt tgacgggaca tctagaaatt 1680 ataaaaatga aacccaacgt gacaataaac tctaaaaact ataaaatcca atttttaaag 1740 gttccaagaa gaatgaatag aaatagtggt agatcgagca agcaaataaa gaaggagatg 1800 acataagggg tagcaactgg tgtgactttt aaaaactata taattagaaa cacgaggatg 1860 ataaggtttg gtctttcaaa gtcttaagac aatgagatag ctatttaata aattttaagt 1920 aaaatcatac taaaaaatat atgattttgt ttgggtgcta gccgcgcaat tgcgcgggcc 1980 acccagctag tt 1992 // ID RIRE3_LTR repbase; DNA; ORY; 2316 BP. XX AC AB014739; XX DT 10-JUL-2002 (Rel. 7.06, Created) DT 10-JUL-2002 (Rel. 7.06, Last updated, Version 1) XX DE Long terminal repeat from the gypsy-like retrotransposon RIRE3. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW GYPSY superfamily; Long terminal repeat; RIRE3_I; RIRE3_LTR. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-2316 RA Kumekawa N., Ohtsubo H., Horiuchi T. and Ohtsubo E.; RT "Identification and characterization of novel retrotransposons of RT the gypsy type in rice."; RL Mol. Gen. Genet 260, 593-602 (1999). XX DR GenBank; AB014739; Positions 1 2316. XX SQ Sequence 2316 BP; 510 A; 614 C; 529 G; 663 T; 0 other; tgtcgcgtcc caaatcgact ctaaaatata tcctcgaaat tgtgcaaaga ataattaaaa 60 ttcaatgtga aagcctccaa caattaaaat gtgcaaagat aaaagtcaaa tgaggcttgg 120 aggatttttg tatatttcct aaaagcctaa aatgcttaaa taaattttag tggaattttc 180 agagcacaaa taataattga taagaaataa acaaagttaa aatgatttta taaaaagaaa 240 aaccctaaaa gtcccccttc ccacccttag gccagcccgg cccatctctc ctccccccct 300 ctctctcctc tccccgcggc ccactcggcc tctccccgcg cgcgcgccgc tgacgggcgg 360 gcccgcccgc caccctcgct gacgggtggg gcccacccgt catccccttc ctcccgccgc 420 tccagccgcc tcccctgcgc cctagcgccg ccgccgccgc gaatcccgcc gcctcccgcc 480 gtccccgcgt gaaataaagt ggggggaatc gctccccgtg atcccctctc cctttccccc 540 catttttccc tctctctctc tctcgcgcgt tcaaacgggc ggatttgccc tcgcaaatct 600 cgccagcgcc attgatggtg gccggacctc ccgcgccggt ttccttcccc tccggccgct 660 ctctccccct tccaacccta ttaaaaccct ccccgtgcct ccctcgcccc tttccgcccc 720 ttgccacacc gtctccccgc cggaatcatc cttgaaggtt gaagccgaca tttgggaaat 780 gagcaaggca agtcacatca tccttgaaca tattgaatcc cagtttataa aattattttg 840 atttaaatta ttgcattatc gctttattta aattcccgcg ttattactgt tttatctagc 900 catgcctatt tacctttgtt atgaccttat tattgttatt gttattattt ccttgttcac 960 cctagaataa ataaaacccc aactagtgga cactctactc atggtaccac tggtatgatt 1020 ttaggtagat gtttcgctgg ttaattaggc aacattaggt ggttttacaa ctctagactt 1080 tggggatact cttatcacct ggacactatg gaatggttgg attattatgg aattggattc 1140 acatctcccc ctctattcaa aaccctcaaa atggttttag gctgggctcg gggtgcatgg 1200 ttttgatagt agcacctcgg ccatataagg accggtcttc gggcctttgt tgcaaagcac 1260 taccatactt ccacatgtct agtgggtaag gcttagttgg tggctcagtc tggttataaa 1320 caaaagtaca tggatggaga tggacaaagt cgggggtcga tggacatctc tggggcaaat 1380 gaaggctaca cgagctgcgg cccggtattc aagatgtcat ggcacagggc cggtgtcctg 1440 ctgctagggg ctcagtcctg cctacctgtc ccgggggttc cggccgtagg tggggttggg 1500 tcggtactct tgtttatggc taggatgggt tggaaactat gtcatgtctt ccgtccgtat 1560 accgtggtgg tatgtggcac gtggttacac gtgaggaaga tgtgtcttgt gggtaaagat 1620 gtacacctct gatcagagta taatctattc gaatagccgc gccctcggat atgggcaagc 1680 cgagcaatgt acccaagtta gtgttttaat tcttaaaacc tgcttaacaa ctaaaatgtg 1740 gaatggttgg cctgggttgg cttgggacga gctgggaccc agggtcgggt tgccagttcc 1800 gtctgaatca tcctaaggcc tgggttaagg caggttcgtg tgggttcacg gccttggtta 1860 ataatattgt atagttctag gaccgtgttt acaaagtaac tttgagcaac taagtgactt 1920 ttaatgctgt ttactgcaaa ccctaacccc tttgcaaaat aattcccttg tactccattg 1980 catctattct gcacgtgtgg gtgtgtcttg ttgagtgcgt tggttgtact cagtcttgct 2040 caattttacc caagcccagg agaggactcc ttggagatga aggctttggt gtctagctca 2100 tgcctgccgt caagcagctg tggtcgtcac cctagtcttc cgctgtttct cggttgtcgt 2160 tgtgtgctgg gccttcgctt cccgtgtaat aattctattt acgcttccgc ttgttaaact 2220 ctgaattgta tcaacttttg gtgtaccttg cctcctggga caaggattaa tgcacgcacg 2280 taaggaacgc ccgttgggtt atttccggtc gtgaca 2316 // ID ENSPM4_OS repbase; DNA; ORY; 11610 BP. XX AC . XX DT 26-MAY-2005 (Rel. 10.05, Created) DT 27-MAY-2005 (Rel. 10.05, Last updated, Version 1) XX DE En/Spm like DNA transposon from rice: a consensus. XX KW EnSpm; DNA transposon; Transposable Element; ENSPM4_OS. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-11610 RA Jurka J.; RT "EnSpm like DNA transposon from Oryza sativa : consensus RT sequence."; RL Repbase Reports 5(5), 114-114 (2005). XX DR [1] (Consensus) XX CC Contains imperfect terminal repeats. It is distantly related CC to ENSPM2 and ENSPM3 from Oryza sativa. Individual copies up to CC 99% identical to consensus. XX FH Key Location/Qualifiers FT CDS 591..3881 FT /product="ENSPM4_OS_1p" FT /translation="FQMDRRWMYYAHRSSTEYREGVTEFVTFADNDRKSRM FT SMHMLCPCRDCKNEQMIEDKDEVHAHLIMNGFMKKYTCWTKHGEQEAPDVA FT AEEVLDQDVENTAAAREGMFVPSPLGGETIDLDTQCLSTMLHDIEDAEDND FT RDYEKFSKLVEDCQMPLYDGCKSKHSKLSCVLELMKLKASNGWSDKSFTEL FT LELLKDLLPEGNNLPQTTYEAKQVLCPLGLEVRRIHACPNDCILYYKEYAD FT LDVCPICGASRYKRAKSEGEGSKSKRGGPAKVVWYLPIAERMKRMFANKEQ FT AKLVRWHAEERKVDTMLRHPADSVQWRTIDRIYQEFSNDPRNMRFAMCTDG FT INPFGDLSSRHSTWPVLLVNYNLPPWLCFKRKYIMLAMLIQGPRQPGNDID FT VFLEPIIDDFERLWNEGTRTWDAYAQEYFNLHAMLFCTINDYPALGNLSGQ FT TVKGKWACSECMEETRSKWLKHSHKTVYMGHRRFLPRYHPYRNMRKNFNGH FT RDTAGPPTELTGTEVHNLVMGITNEFGKKRKVGKRKEKSTSKEKTEEHVEK FT QKTKERSMWKKKSIFWRLPYWKDLEVRHCIDLMHVEKNVCESLMGLLLNPG FT TTKDGLNARRDLEDMGVRSELHPITTESGRVYLPPACYTLSKEEKIDLLTC FT LSGIKVPSGYSSRISRLVSLQDLKLVGMKSHDCHVLITQLLPVAIRNILPP FT KVRHTIQRLCSFFHAIGQKIIDPEGLDELQAELVRTLCHLEMYFPPTFFDI FT MEHLPVHLVRQTKCCGPAFMTQMYPCERYLGILKGYVRNRSHPEGSIIESY FT TTEEAIEFCVDYMSETSSIGLPRSHHEGRLDGVGTVGRKTIRLDRKVYDKA FT HFTVLQHMTEVVPYVDEHLAVIRQENPGRSESWVRNKHMSSFNEWLKNRIA FT RLQNLPSETLQWLSQGPEWSATTWQGYDINGYTFHTVKQDSKCTVQNSGLR FT IEAASDGGRRDQYYGRVEQILELDYLKFKVPLFRCRWVDLRNVKVDNEGFT FT TVNLANNAYKDEPFVLAKQVVQVFYIVDPCNKKLHVVREGKRRIVGLDNIA FT DEDDYNQHVHGIGQEIPLEEEEEEDEVQYARVDHEEGLFL" FT CDS join(7630..8466,8470..9846) FT /product="ENSPM4_OS_2p" FT /translation="QILPSVCAAELPQEQHTSMSGGTSASRSSRNPRSQNI FT WPTTVQVIREVDASGRPTAPRTVIGRWSNCCGIAARENFGILHKDIGKVTE FT AEKERAWTAMEKWFTFPAEAKDRLKRKAFQKMGKAWKNWKSKLFTEFVNPP FT GNHTPFDEYPQITEAVWEEFCSLKTTQEFRESSEAHRVLQQRNEHPHRLGT FT AGYIGKEAIWAQEDAAAAAANVPAPFSDIPEQRARNWARARGKVNPDGSVT FT FENKSDAVVYQELVSSLLNLTNFRSYKVQVRINDYLLFLGLVAEQASQSEV FT ESAPKRREDDILTKALGTKEHPGRTRGIGSDVPWKHGLPQYSSQYRKRKVS FT KEERDARLKAELKVEVIQELEASMNARVEERVNKVLADMNIPRVTTPAVQP FT TPRVQHDASPSQHRSSCASTEVPAPGLPIAPLAAVDHIEVIVVIRSISNKR FT HLHIPILNSNFHLMQGAAQCVLLARVHPTFAPEVAEGMAFKPSVTDKVHGA FT DLLAGYAKVSIDTVKDTWSGYPLPVPPNDEIMTLGDARKTFIQWPKEDIVV FT KMTPRPSRPTELTPPKSKLSIEAPRGPALSVPHSPGGADMDLADIAQSLAP FT IKTTRKADSSPPLVKGQKRERGKGKVGELAPEPKRGKAATSMPVSKSGKVV FT RAPAQFELGMPLVEDNVLAVMGIACRELHKQYMELSNAKRKMRESSIVGHH FT DHQPFLSSPAYITIGFDDLFDLFRIRKLDTGLLKCYSL" XX SQ Sequence 11610 BP; 3090 A; 2632 C; 2706 G; 3176 T; 6 other; tcactacgcc agatcctcac acctctgacg ggatacctgt gacgggcaaa cgaattggtc 60 agtagtgacc attacctttg acgggttata cgggatgccg tcaccggtga ggcatctggc 120 cgcggcccgt cacaggtatc ccctcacctg tgacgggccg aaaggaaaac ccgtcagagg 180 tataccagtg acgagttttt cttccaaccc gtcactggta tcccctcacc tgtgacgggc 240 cgatacatta gaagccgtca gaggtgatgg gccgccacct gtgacggctt tcatttctgg 300 cccgtcacag gtgagcggat accagtgacg ggccgttgaa tagaagcccg tcaaaggtat 360 gagcaatacc tttgacgggc tttttttatc taacccgttt gaggtgtgtt gggtctataa 420 atacccccca aactgccaac tgctttccat cccgaccatt gtactgttca caaatcggtt 480 gggagggcaa ggggggcgat tttttgctaa aattcaaggt aaaaaacaca ttattctcca 540 ttcattctca acatatcgat catcatttat ttttcttcgt atgttgttga tttcagatgg 600 atcgtagatg gatgtactat gcgcatcgtt cgtctaccga gtatagagag ggggtcactg 660 aatttgtcac atttgcggat aatgacagaa aaagtaggat gagcatgcac atgttgtgcc 720 catgtaggga ctgtaagaat gaacagatga tcgaagacaa ggatgaagtg catgctcatt 780 tgataatgaa tggattcatg aagaaatata cctgctggac caagcatgga gagcaagagg 840 cgcctgatgt cgcagctgaa gaagtgttgg atcaggatgt agagaacacc gccgcagctc 900 gagaaggcat gttcgtacct tctcctttag gtggagagac catagatttg gacactcaat 960 gtctatctac aatgttgcat gacattgaag acgcagagga caacgacaga gattatgaga 1020 agtttagtaa gttggtggaa gattgccaga tgccgttgta tgatggatgc aagtcgaagc 1080 acagcaagtt gtcatgcgtg ttggaactca tgaagcttaa ggctagtaat ggctggtcgg 1140 acaagagttt tacagaactc cttgagctgt taaaggatct gttgccagag gggaacaatt 1200 tacctcagac gacatatgaa gcgaagcaag tattatgtcc gttgggcctg gaggtcagaa 1260 gaattcatgc atgtccgaac gactgcattt tgtattacaa ggaatacgct gacttggatg 1320 tctgccctat ctgtggggca tcaagataca aacgagcaaa gagtgaaggt gaaggaagta 1380 agtcaaagag gggaggccca gcaaaggtgg tgtggtatct cccaattgcg gagcgcatga 1440 agagaatgtt tgcgaacaag gaacaagcta agcttgtgcg ctggcatgcc gaagaacgga 1500 aagtcgatac tatgctgagg cacccagcag attcagtaca gtggaggaca atcgatagga 1560 tttaccagga attctcaaat gacccaagaa acatgcgttt cgcaatgtgt acggacggca 1620 ttaatccttt tggtgatttg agcagtcgtc acagtacatg gccagttctg cttgttaact 1680 ataaccttcc tccctggttg tgtttcaaaa gaaagtacat tatgcttgcc atgctcattc 1740 aaggaccgag acaacctggc aacgatatcg atgtgttcct tgaaccgata atcgatgact 1800 tcgaaaggct atggaatgag ggcacacgaa catgggacgc atatgcacaa gagtatttca 1860 acctccatgc gatgctgttt tgtaccatca acgattatcc ggcccttggc aacctttctg 1920 gccaaactgt gaaagggaaa tgggcgtgtt cggagtgtat ggaggaaaca agaagcaaat 1980 ggttgaagca ttcacacaag acggtctaca tgggtcacag gagatttctc ccaaggtatc 2040 acccgtatag gaatatgaga aagaatttca atggacacag agatacagcc ggacccccga 2100 cagagctaac agggacagag gtgcacaact tagtgatggg aataaccaac gagtttggaa 2160 aaaagaggaa agttggaaag cgaaaagaga agagcacatc gaaggaaaaa acagaggagc 2220 atgtggaaaa acaaaagaca aaagagagga gcatgtggaa aaagaagtca atattctgga 2280 gactaccata ctggaaggat cttgaagttc gccactgcat agatttgatg catgtcgaga 2340 agaatgtatg cgagagttta atgggattac tgcttaaccc aggtactaca aaggatggtc 2400 tcaacgcccg acgagatctg gaagatatgg gtgttcggtc ggagctacat cccataacca 2460 cggaatccgg cagggtttac cttcctccag cctgctacac tctctcgaaa gaagagaaga 2520 ttgatttgct aacatgtttg agtggtataa aggttccatc tggttactca tcaagaatca 2580 gtaggctcgt ttcactgcaa gatcttaagt tggttggaat gaagtcgcat gattgccacg 2640 ttcttatcac acagctgttg cccgttgcaa taaggaatat tttgcctcct aaggtgcgac 2700 acacgatcca gcggttgtgt tccttcttcc atgcaatcgg ccagaagatc attgatcccg 2760 agggactaga tgaactacag gcagaacttg tgagaaccct atgtcatctt gagatgtact 2820 ttcctccaac tttctttgac ataatggaac atcttccggt gcaccttgtg aggcaaacaa 2880 agtgctgtgg tccagcattc atgacgcaga tgtatccttg cgaaaggtac ctggggatcc 2940 ttaagggtta tgtacggaac cgttcacacc ccgaggggag tatcatcgag agttacacca 3000 ccgaagaggc catcgaattt tgtgtggact acatgtcaga aacatcttca attggattac 3060 cacgatctca tcacgaaggg aggcttgacg gtgttggtac tgttggaaga aagactatta 3120 ggttggatcg gaaggtgtac gataaagctc atttcacggt actacagcat atgactgagg 3180 tggtgccgta cgttgacgaa caccttgcag ttatccgaca agagaaccca ggccgatcag 3240 agagttgggt caggaataag cacatgtctt ctttcaacga gtggctgaag aaccgaattg 3300 ccaggttgca gaacttgcct agtgaaacac ttcagtggtt gtcacagggt cctgaatgga 3360 gtgccaccac ctggcaagga tatgacataa atggatacac ctttcacacg gtcaagcaag 3420 acagcaaatg cacagtgcag aacagtgggt tacgcatcga ggctgctagt gacggtggtc 3480 gtcgtgatca atactatggt agagttgagc aaatattgga gctagattac ttgaagttca 3540 aagtcccgtt gtttcgttgt cgatgggtcg atcttcgcaa tgtaaaagtt gacaatgaag 3600 gtttcaccac tgtcaacttg gctaacaacg cgtacaagga tgaaccgttc gttctcgcca 3660 aacaagttgt tcaagtgttc tacatagttg acccgtgtaa caagaaacta catgttgttc 3720 gtgaagggaa aaggagaatt gttggattgg acaatattgc agacgaggat gattacaacc 3780 agcacgtcca cggcataggt caagaaatac ctctagaaga ggaggaggaa gaagatgaag 3840 ttcaatatgc acgtgtcgac catgaggaag gattattttt gtaatttatg tacgtagttt 3900 atgtctacat gtctgttatc tgtatgactc taatatgttc gcaatgatca atagtatatt 3960 gcttatgaaa tagtcaaata aaataattaa gtgaagcacc cactagaagt gaaataaaat 4020 aattaagcaa gtataagcat tggaaataat ataattaaag tagtataata atgaagtgca 4080 attactactg ttagtgaaat aaaataatta agtataaaaa aatatgtagt gtatgtgaaa 4140 atatgttaag gaaaataaaa gaactaagtg aaataaaata aaataaaatt gctctaggca 4200 aactcacctg tgacgggctc tatctgtagg gccgtcacag gtgacctcac ctgtgacggc 4260 ccagagtgtt gggcccgtca caggtggtct tacctgtgac ggctccacgg ttggcgcccg 4320 tcacaggtga ggccacctgt gacggccaca tagttggagc ccgtcacagg tgagtttgac 4380 tagggttgac ctagggttgg acatcttcta gatcgatcca gatccggcgc ccactctcac 4440 tcactcactc tctcgaccgc cgcctcgcct ctctcgacct ctctgccgcc ctctacgccc 4500 tcctctccac cgccgcctcg acctctccac cgacgccgtc ctgcaccacc gccgccgcac 4560 tcactctctc gaccgccgcc atccatctcc gccgccatct ccaccgccgc cgcctcgacc 4620 tctccgccgc catctccgcc gccatccaga ccctcctcgc cgccgccctc tctgccgcca 4680 tctccgccct ctccgccgcc ctcgccgcct ccctctccac cgccgcctcc tcactcactc 4740 tctcgaccgc cgccgtcctc tccaccgcca tctccaccgt cgccgcctca acctctcctc 4800 cgccctctcc gccgccatct ccgctgccct ctctgccgcc atctccgccg tcctctccac 4860 cgccctctcc gccgccgcct ccaccgccgc cctcgccgcc ggtcgtcctc tccgccgtcc 4920 gtccatcgac ttccccgacc tccccgaccc tgacctcccc gacgccggga tccccgacca 4980 ccgccgaccg cctcgacctc ttcgccactg cctctccgcc gccgccacca ggatccagga 5040 cgactacggc ctgcgccgcc gtctccaagt acgccgcttc tccaagtatg ccgccaccct 5100 cccccattcc tccttttttc cgatggatga attgcattgt ttagatgaat gaaatgtgat 5160 ttgttgtttc gattattggt gctgctgtat agatgaatta aatgtgattt gttgtctgtg 5220 gatgttttgg atgaatgtag gggctagatt ttatatacat gattttggtg cagtgaatct 5280 tagcatcaat agaggatctt agcatgaatt tttaatgcat tttgttttct ataattcttt 5340 gataattaag gacctttatt aggtttaggg tttgaaattt agttcaaatg gaagaattga 5400 twgattggcc gcagatttaa tgtagttccg aggttatcaa accatcacag aatacaaaat 5460 gcatggggaa ttttggtgga ttggycagtg tagtccatgg acggaaccga cctagacacc 5520 aaaattctcc atgcattttg ttttctgtca ttctttgatg attaaggaag ctttgcagat 5580 tatctaaact tgttgattta tatacccttt ttgtctatga ataggtgaat tgcatgaatt 5640 gttgtttata tacatgattt atataccctt gctgctgctg ccacataaat gattgtgggc 5700 tgttttatta tctagacttg cttgaattga atggatgaat tgctgtttac atgaagttag 5760 tagtactgtc tcctttttta tctacacccc tgctactgcc cctacacttg ttcacttgtt 5820 ccttattaaa tggccagtgt agagtggtta tatacctcta cacttgttct ttttttatgc 5880 ataagaacag attttgtgca cttgctcttt ttttatgcat aagaacagat tttctgcayt 5940 tgctcttttc ttctggattg ataaatggcc agtgatgaat tgctcaataa gaacagatta 6000 tctacacttg ttcatttttt tatctattct tctttttgcc cctgttgtgg ctcaataagt 6060 aatgaattgc tcaataagaa tagtttatct gtacccttat tgtgggctgt tttttaaatt 6120 tgcatgattg actcagtggt tatatacctc tacacttgtt ctttatggat aagaacagat 6180 tatctacact tgttcttttt ttatgcataa gaacagattt tctgcacttg ctcttttgat 6240 gttatgattt cctcttttta tcccttcatg caaatgaata taattgatgc atatttctga 6300 gcaaaactga ggccatatct ttcatagtat accccgtatt acatgatttt ggtgcagtga 6360 atcttgaatg tggatttaag tgcaactgct gctgtctatg tttgcccttg ctgtctatgt 6420 ttgcccatgc tgctgcctat ggttgcaact gttagttaag tgcaacttga atgtggattt 6480 aagtgccatt tggacatata accattcatg gagtgtgtac tgctatatat gttgctacac 6540 ctattgaatt ttgtggactt gcatttatac tcctcctgct gctgttttat gtcaatcatg 6600 caaattctgt acccttgctg ctgctgtttt ttaaatttgc agtgattgat tcagtggtta 6660 tatacctcta cacttgttct ttttttatgc ataagaacag attttctgca cttgctcttt 6720 tttttggatg cataagaaca gattttctgc acttgttcat ttttttatct acaataatat 6780 atgcatgatt tatataccac tgctgttgtt gccccatgta cttcttgtta aatggccaag 6840 gatgaattgc ttaataagaa cattctatct acacttgttc ttttctttat ggataagaac 6900 agattatcta cacttgttga tttatatacc cttgctgtct atgtgaattt ccctctgctg 6960 ttgctgttta tgtgaatttc taccctgctg ytgctgtttt atgtgaattt ccaccctgct 7020 gttgctgttt atgtgaatct ccccttgctg ttgctgcccc tgtggcatat atacccctac 7080 tgctgttgta tggccctgct actgctctta ttgctgctat tatatggcca tgctgttgct 7140 actactctaa tttcctgcac ttgctctttt ccttatggat aagaacagat tatctacact 7200 tgttcttttt tattgataag aacagatgaa ctacacttgt tctattttat ttgggttgct 7260 tttttctcct agtagctgat ttcctctttt tatcccttca tgcaaatgat tgtaattgat 7320 gcatatttct cagcaaaact gaggccatat ctttcatagt ataccccgta ttacattgga 7380 tctaatgcta tttagtctaa tggtaggaaa tttataatct ttttcgcgaa agttaaacca 7440 tgtcaacgcc cggcgcaaac ccgccctccc caacacctgc gaggatccag gaagaagcaa 7500 acccagccac agaggcagtt gccgaaggtc atcccgcgac aacggcggtc caacaacccg 7560 aaattcatgg taatttatag gataaatttt caccacatga ccacataaat tttagctagc 7620 accccttagc aaatattgcc ttctgtttgt gctgcagaat tgccgcagga acaacatacg 7680 tcgatgtcgg gcgggacaag tgcaagtagg tctagtagaa atccgcggtc acaaaatata 7740 tggccgacca cagtgcaagt tataagagag gttgacgcta gtggtaggcc cacggcgccc 7800 aggactgtca ttggaagatg gtctaactgc tgcgggatag cggcacgtga gaacttcggg 7860 atcctccata aagatatcgg gaaggtcaca gaagccgaga aagagcgagc ttggacggca 7920 atggagaaat ggttcacatt tccagccgaa gcaaaggata ggctcaagcg gaaggcattc 7980 caaaagatgg gcaaagcttg gaagaattgg aagtcgaagc tcttcaccga gtttgtcaac 8040 ccgcccggca atcatacgcc gttcgatgaa taccctcaaa taaccgaagc ggtgtgggag 8100 gaattctgct ctctcaagac cacccaagag tttagggaat caagcgaggc acatcgcgta 8160 ctgcaacagc ggaatgagca cccgcatcgg ctgggcaccg cagggtacat cggcaaggag 8220 gcaatatggg cccaagaaga tgcagccgct gcagcagcga atgtccctgc cccgttttca 8280 gacatccctg aacaaagagc tcgcaactgg gcgcgggcaa ggggtaaggt caacccggac 8340 ggctctgtca catttgagaa caaaagtgat gccgtcgtct atcaggaact ggtgagttca 8400 ctacttaacc taactaattt ccgttcgtat aaagtacaag ttcgtataaa cgactatctt 8460 cttttctagt tgggcttggt tgctgaacaa gcttcacaaa gcgaggttga gtccgcgccg 8520 aagaggcgcg aagatgacat cctcacaaag gcgctcggaa ccaaagaaca tcctggccga 8580 actcggggaa ttggtagcga tgtgccctgg aagcatggac tccctcagta cagctcccaa 8640 tacaggaaac ggaaagtctc caaggaagag agggacgctc gtttgaaggc cgaacttaag 8700 gttgaggtca ttcaagaact agaagctagc atgaatgcaa gggtggaaga aagggttaac 8760 aaggtgctcg ccgacatgaa tataccccga gtcacaacac ctgctgtgca accaactcct 8820 cgtgtacaac acgacgcgag tccgtcacag cataggagta gttgtgcatc cacagaggtg 8880 ccggcccctg gtctcccgat cgcaccacta gctgcagtgg accacatcga ggtaattgtt 8940 gttatccgat ccatatctaa taaaagacat ttacacattc caatattaaa ttcaaacttt 9000 caccttatgc agggcgcagc acagtgtgtc ctactagcga gagtccaccc aactttcgct 9060 cctgaagtcg ctgagggcat ggctttcaag ccctcggtta cagacaaggt ccacggcgca 9120 gacctgctag ctgggtatgc caaggtgtcc atcgatacag taaaggacac ctggtcaggc 9180 tatccgctgc ccgtgccccc aaatgatgaa atcatgactt tgggcgatgc gcgcaagacg 9240 ttcatacaat ggcccaaaga agacatagtt gtgaagatga ctcctcgtcc aagtcgaccg 9300 acggagctta cacctcccaa gtctaagcta tcaattgagg ctccccgtgg accggcattg 9360 tcagtacctc attctcccgg tggagctgat atggacttgg cagatatagc tcaaagcttg 9420 gctccaataa agaccacaag aaaggccgat agctccccac cacttgtcaa gggccagaag 9480 cgtgaacgcg gcaaggggaa ggtcggggag ttggcgccgg agccaaaaag gggcaaggct 9540 gcgacgtcga tgccggtgag caaatcgggg aaggtcgtga gggcgccagc ccaatttgag 9600 ctaggcatgc cattggtgga ggacaatgtg ttagctgtga tgggtattgc ttgccgagag 9660 ctacataagc aatacatgga gctaagcaat gccaagcgga aaatgaggga gtcatccata 9720 gttggacatc acgaccacca gccgttccta tcgtcgcctg cctatataac tataggcttt 9780 gatgacctct tcgacctttt caggatccgg aagttggaca ctggtcttct aaaatgctac 9840 tccttgtaag tgcatacctt ctatacttgt gatatgactg gactatatct cctaattaaa 9900 ttagttctaa tacgtaaata ttttaaggtt gtgttggatc gagagtcgtc gccatggtaa 9960 tcaggttggg ttccttgatc catccatggt gaatgaggtt aatttacgac agagcttcac 10020 tgaggtggtt gactatgtca accggtgttt atgggcccat caagacaagg agtacatcat 10080 gtgcgcacac aaccaagagt aagaggacaa tacccttcgt gtatattgtt tttgaagtta 10140 aggttcttag tactaacgct acataaccac tgcgcaggcg acattggatt ctcctagtca 10200 tcgtacctaa gtggagtagg gttacctacc ttaactccaa taagtccaaa gattatgatt 10260 tcagtgaaat caccaaggcc ttaaatatgg cttggggccc atatgtggaa aagggtggta 10320 ggcacaagga gggcaagaat gaactttatc atgacaccaa gtttgcatgc gcacaacaga 10380 tcggagacca atgtggtttc cacgtgtgcc acaacatgtc aacacttcta agagaggtga 10440 aagatttcga ccctgaggtt gttgctaatg gcgaataagc tcatttcaat atctacattg 10500 ctattcaaaa cgtgctaatt aacctcttat ttattaaaca gaaaggtaga gctggcttca 10560 agatctcacc catcaacccc cccgctatca gaggcgaatt gtgcgccttt attcttgcag 10620 aaataatgaa caagaaagga cgttttcatg ccaaatagac tcatgaactt ggctagataa 10680 tttattgtga tgtaaaaaag atgtttttat aatttctggc gatgtaaaaa attatgtttt 10740 tatagagtgc aatgtaattt actttcatat gtgcaatatt tatggtactt tactaaattg 10800 tcatcacatt tgatcaacta cgatttatgt tgtactattc atctgttttc tccttttttt 10860 ttcccttatt gacaggttgt ggaggtcgay gacattatgg ctttaatcca ttttggtaag 10920 tatatatgcg gttytatgag caacgaccga aattgtgtgc tataataaat taaattgttg 10980 catatgtgat gttgtaaatt gttgcatttg tgatggatct gtgatatgtg atggatctgt 11040 gatgttatat tggggaggtg gtgtatctgt gatatggagg gggggtgact ggaatatatc 11100 tgtgatgttt ctgtttttca gagggcatgg ctagcaaatc ctgaggctag ccaatattta 11160 gcatttattt tttttctgga attaactcat cagtgacggg tcggaacaaa aatccgtcaa 11220 aggtaacatc acctgtgacg gactagcaaa taaaggcccg tcagaggtga cctacctgtg 11280 acgggccttt acttttgggg ccgtcacagg tagatcaccc tgtgacagct tctaactacc 11340 ggagaccatc acctctgacg ggcctttatt taaagggccg tcagagatga gtcacctgtg 11400 acgggtccta actcgcccta ggctagcgga gaccaacacc tctgacggcc ttctagtaac 11460 ttgcccgtca gaggtgggtg tcacctgtga cggccggcca cccgtcaaag gtgactggac 11520 tcaccagtga ccactgatca ctgaccatgc gcgaagccgt caaagatgag ggtttgggcc 11580 cgtcacaggt gaccttggcc agtgtagtga 11610 // ID CRM-I_OS repbase; DNA; ORY; 5933 BP. XX AC . XX DT 16-MAY-2005 (Rel. 10.05, Created) DT 11-OCT-2005 (Rel. 10.05, Last updated, Version 2) XX DE Rice centromeric LTR retrotranposon, internal sequence consensus. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW reverse transcriptase; internal sequence; pol domain; KW integrase domain; CRM-I_OS. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-5933 RA Gentles A. and Jurka J.; RT "Rice centromeric LTR retrotransposon."; RL Direct Submission to Repbase Update (16-JUN-2005). XX DR [1] (Consensus) XX CC There are about 15 nearly complete copies in the rice genome, CC that are more than 97% similar to the consensus, indicating CC relatively recent activity of this retrotransposon. Generates CC 5 bp TSDs. It is 83% similar to the maize (Zea mays) CC centromeric retrotransposon CRM_INT. The 908 bp LTRs are CC deposited as CRM-LTR_OS. XX FH Key Location/Qualifiers FT CDS 1256..5839 FT /product="CRM_1p" FT /translation="MAGPEDKDEEGASHSPRTKGIIQYFTRQVKQHTEGLD FT TDLQVTNEKIGQLESTQISTNTKLTGLETAVARIDTSLAALVRHFDALNAG FT GNGGGNDDDIDGEYVEDNLEDEYIADTEQDDRDARDRRRLHNNRRGMGGRR FT RREVRNNDDAFSKIKFKIPPFDGKYDPDAYLSWEIAVDQKFACHEFPENTR FT VRAATSEFTDFASVWWIEHGKKNPNNMPQTWDALKRVMRARFVPSYYARDL FT LNRLQQLRQGAKSVEEYYQELQMGLLRCNLEETEDAAMARFLGGLNREIYD FT IVDYKDYTNMTRLFHLACKAEREVQGRRASAKANFSAGKTSSWQTRTTPPA FT GRTASPSSTPTTSRAAPPPSSDKSATKAAQPAPSASSMASTGRMRDVQCHR FT CKGFGHVQRDCPSKRVLVVKNDGEYSSASDFDDDTLALLAADHADNEPPEE FT HIGAAFADHYESLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKERCCRMIID FT GGSCNNLASSEMVEKLALSTKPHPHPYYIQWLNNSGKAKVTKLVHINFAIG FT NYHDVVECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIVLH FT PMSPEDILRDDVAKAAKSKCESDKKAQSDGKKPETINLKPKCLLATKSDIN FT ELIASPSVAYALVCKDALISLHDMQHSLPPAVANILQEYSDVFPKEVPPGL FT PPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESL FT SPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSI FT VFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMR FT LMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNL FT EKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLA FT GFYRRFVQDFSTIAAPLNALTKKGVPFTWGTSQENAFHMLKDKLTHAPLLQ FT LPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPVLNYSTYDKEL FT YALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESF FT PYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDV FT LLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFG FT AKKTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPT FT VPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKTDDASHIAD FT LFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTD FT GQTEVVNRTLSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKMCPFQI FT VYGLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHETTKENIERMNAKYK FT FAGDKGRRELNFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAKINE FT NAYKIDLPADFG" XX SQ Sequence 5933 BP; 1588 A; 1198 C; 1391 G; 1756 T; 0 other; ggtggtatca gagcgtggtt catcggtgag agaatttacc cttcccttcg tcattaattt 60 ttttttccta tagtccagaa aagaccaaca aaaaaaatag tagattagtt ttcccgtgat 120 cctatagacc attgtgcctt tttactagta ctgcttagtt aaggcttgtt gagttttcga 180 ttgcatcggt tgtgttaatt tgctggtctt agtgttaggc gattagagtt tcgagttctt 240 gccaccaccg cacatcgcca ccttcatcaa ttttgccgtc atcaccaccg tcaccaccgt 300 cgcagtcacc caccaaatca ctttctattt gtgtttgatc tgttgccgat agcttttgtg 360 agttgccttg tatcctgccg ccactagaaa ggaaatagaa ccctgattcg agtgaccttc 420 cttaaaacag tcatatcttt ttcatacgga ctcgaaatta ggcttataat atatccacgg 480 acatctacaa aaaaagttac atccgattct ccccgctttg ccgggttcgg caaatttaaa 540 atcgccaaat tcctcttgca aaattctgtt tttgtggcga gaagcttcgg gacctattcg 600 catagaactt taaaaaaatt ctacaagctt catactttgt ccgtttgaga taagattttc 660 tgtggttggt tctagtgtgc tcctggttgt gaaaaaaata tcaaaaaaaa aaaaaaaaag 720 ttgtgcctct ctcctcagca ctagagagag caagcaaaaa aaaaaaaaaa aagaggatcc 780 agcgagcaca ccccaccatt ccccctttgt caccaccttc caccaccggt tcttgttttc 840 gttgctgttt gggtttgtgt tttgtggcgt cctttgtggt taggctcgcg tctctacttc 900 gactagccta ggaccagcac tgtacactat acccttgagc gattattcaa tttgctttgg 960 ctaacgtggt ttctagtttt ctcttgagca ttgctttcag cccaccaaca gctccaccac 1020 aaacccgact acagcttgac aggtcttgtt gctacagcac cgatacacct cgttccacgg 1080 ttgctaactt gtgggttgct gtccccctcc tgtgggcaag gtaagaactg gtaagagctt 1140 gtgagacaag ctgcgagtga agtgagagtg agcgtcttgc aaaagctaca tcccaatagt 1200 tgtgtagggc ttacattaca tcctccattg ttttgttgtc cttcatttct aaaccatggc 1260 aggtccagag gataaagatg aggagggtgc atctcattcc ccacgcacca aaggcatcat 1320 ccaatacttt acaaggcaag tgaagcagca cacagaagga cttgatacag atttgcaggt 1380 gacaaatgag aagattggac aattggagtc cacgcagatc tccaccaaca ctaagcttac 1440 agggctggag acagcggtcg cccgcattga cactagcctt gctgctcttg tgaggcattt 1500 tgatgctctc aatgctggag gcaatggtgg gggtaatgac gatgacattg acggagagta 1560 cgtcgaggat aatttggagg atgaatatat tgctgacact gaacaagatg atcgagatgc 1620 tcgagatcgt cgacggctac acaacaatcg acgaggtatg ggtggtcgcc gccgacgcga 1680 ggtacgcaac aatgatgatg ctttttctaa aattaaattt aagattcctc cttttgatgg 1740 aaaatatgat cctgatgcgt acctctcttg ggagattgct gttgaccaaa aatttgcatg 1800 ccatgagttt cctgagaaca ctagagttag agctgctacg agtgagttca ccgattttgc 1860 ttcggtttgg tggatagaac atggcaagaa aaatcctaat aacatgccac aaacttggga 1920 tgctttgaaa cgggtcatgc gggctagatt tgttccttct tactatgcac gtgacttgct 1980 gaataggttg caacaattga gacagggtgc gaaaagtgta gaggaatatt atcaggagtt 2040 acaaatgggc ttgcttcgtt gtaatttaga ggaaactgag gacgctgcca tggctagatt 2100 tttgggtggg ttaaaccgcg agatttatga catcgtagac tataaagatt acactaatat 2160 gacccgattg tttcatcttg cttgtaaggc tgaaagggaa gtgcagggac gacgtgctag 2220 tgccaaggct aatttttctg caggtaaaac ttcatcatgg cagacacgca ccactcctcc 2280 ggccggccgt actgcttctc catcttccac acccacaacc agtcgagcag cacctcctcc 2340 atctagtgac aagtcagcga caaaggctgc tcagccagca ccgagtgctt cttcaatggc 2400 atccacaggc cgaatgagag atgttcagtg ccaccgttgc aagggctttg ggcatgtgca 2460 gcgtgactgc cctagcaagc gagttttggt agtcaaaaac gatggtgagt actcctctgc 2520 tagtgatttc gatgatgata cacttgcttt gcttgcggct gaccatgcag ataatgagcc 2580 accggaagag cacattgggg ctgcatttgc ggatcactat gagagcctca ttgtgcagcg 2640 tgtccttagc gcacaaatgg agaaggcgga gcaaaatcag cgacacacgt tgttccaaac 2700 aaagtgtgtc gtcaaagagc gttgttgccg catgatcatt gatggaggta gctgcaacaa 2760 cttggctagc agcgagatgg tggagaagct tgcacttagc accaaaccgc acccacatcc 2820 atactacatc caatggctga acaacagtgg taaggcgaag gtaacaaaac tggtgcacat 2880 taattttgca attggaaatt accatgatgt tgttgaatgt gatgttgtgc ccatgcaagc 2940 atgtaatatt ctgctaggta gaccatggca atttgatagg gattctatgc atcatggtag 3000 gtccaaccag tactcttttc tgtaccatga taagaaaatt gtgttgcatc ccatgtctcc 3060 tgaagatatt ttgcgtgatg atgttgctaa ggctgccaaa tccaaatgtg agagtgataa 3120 aaaagcccaa tctgatggca agaaacctga gacaatcaat ttgaaaccca aatgcttact 3180 tgctactaaa tctgatatta atgagttgat tgcatcacct tcagttgcct atgctttggt 3240 atgcaaagat gctttgattt cacttcacga tatgcagcat tctttgcccc ctgctgttgc 3300 taacattttg caggagtact ctgatgtgtt tcccaaggaa gtgccaccgg ggctgccacc 3360 ggtgcgcggc attgagcatc aaatcgactt gatcccaggt gcttccctac cgaaccgtgc 3420 gccataccga accaaccctg aggaaaccaa ggagattcag cgtcaagttc atgagttgct 3480 tgataaaggg tatgtacgcg agtctcttag tccatgtgcg gttccggtaa ttttggtacc 3540 aaagaaagat ggttcatggc gtatgtgtgt tgattgtaga gctattaata acattaccat 3600 tcgatatcgt catcctattc ctaggttaga tgatatgctt gatgaattga gtggctctat 3660 tgtgttctcc aaagttgatt tgcgtagtgg ttaccaccag attcgtatga agttgggtga 3720 tgaatggaaa acagcattta aaacgaagtt tgggttgtat gagtggttag tgatgccttt 3780 tggtttaact aatgcaccca gcactttcat gaggttgatg aatgaggttt tgcgtccttt 3840 cattggaaaa tttgtggtgg tctactttga tgatatcttg atttacagca agtctatggg 3900 tgaacatttt aatcatttac gtgctgtttt taatgctctt cgtgatgcac gtttatttgg 3960 taaccttgag aagtgcacct tttgcacaga tcgagtttct tttcttggct atgttgtaac 4020 tccgcagggg attgaggttg atcaagccaa ggttgaggca attcagagtt ggccgactcc 4080 taaaacggtc tcacaagtgc ggagctttct aggactcgcg gggttctatc gccgctttgt 4140 gcaggatttc agcaccattg ctgcaccatt gaatgcgctt acaaagaagg gagtgccttt 4200 cacttggggc acatcacaag agaacgcctt ccacatgttg aaagataagt tgacccatgc 4260 acctctcctc caacttcccg attttaataa gacttttgaa cttgaatgtg atgctagtgg 4320 gattggattg ggtggtgttt tgctacaaga aggaaaacct gttgcatatt ttagtgaaaa 4380 gttgagtggg cctgttctga attattctac ttatgataag gaattgtatg ctcttgtgcg 4440 aactttagaa acatggcagc attatttgtg gcccaaggaa tttgtcatac attctgatca 4500 tgagtctttg aagcatattc gtagtcaagg gaagctgaac cgtagacatg ctaaatgggt 4560 tgaatttatt gaatcttttc cttatgttat caaacacaag aaagggaagg agaacatcat 4620 tgctgatgct ttgtctagga gatacacttt gttgacacaa cttgactaca agatttttgg 4680 cctggaaaca atcaaagacc aatatgcgca tgatgctgat tttaatgatg tgttgctgca 4740 ttgtaaggat ggaagaacat ggaacaaatt cgtcatcaat gatgggtttg ttttcagagc 4800 taacaagcta tgcattccag ctagctccgt tcgcttgttg ttgttgcagg aagcgcatgg 4860 aggcggtttg atgggacatt ttggtgccaa gaagacacat gacatccttg ctagtcattt 4920 cttttggcca cagatgcgaa gagatgttgg caggttcgtt gctcgctgcg ctacatgtca 4980 aaaggctaag tcacgcttac atccacatgg tttgtatatg cctcttcctg ttcctactgt 5040 tccttgggaa gatatttcaa tggattttgt gttaggattg cctaggacca agagggggcg 5100 tgatagcatt tttgtggttg tggatagatt ttctaaaatg gcacatttca taccatgtca 5160 taaaactgat gatgcttctc atatcgctga tttgttcttt cgagaaattg ttcgcttgca 5220 tggtgtgcca aacacaattg tttctgatcg tgacacaaaa tttcttagcc atttttggag 5280 aactttgtgg gctaaattgg ggactaaact tttgttttct actacttgtc atccccaaac 5340 tgatggacaa actgaagtgg tgaatagaac cttgtctact atgcttaggg ctgttttgaa 5400 gaaaaatatc aagatgtggg aagaatgctt gcctcatatt gaatttgctt ataatcgttc 5460 cttgcattct actacaaaaa tgtgcccatt tcagattgtg tatggtttgt tgcctcgtgc 5520 tccaattgat ttgatgcctt taccatcttc tgaaaaactg aattttgatg ctaagcaacg 5580 tgctgagttg atgttaaaac tgcatgagac aactaaagaa aacatagagc gcatgaatgc 5640 taagtataag tttgctggtg acaaaggtag aagggaattg aattttgaac ctggagattt 5700 ggtttggttg catttgcgaa aagaacgatt tcctgatttg agaaagtcta aattgatgcc 5760 tagagctgat ggaccattta aagtgttagc aaagattaat gagaatgcat ataagattga 5820 tttgcctgca gatttcgggg ttagtcccac atttaacgtt gcagatttga agccgtattt 5880 gggagaagaa gatgagcttg agtcgaggac gactcaaatg caagaagggg agg 5933 // ID HELITRON2_OS repbase; DNA; ORY; 15167 BP. XX AC . XX DT 10-JUL-2002 (Rel. 7.06, Created) DT 10-JUL-2002 (Rel. 7.06, Last updated, Version 1) XX DE HELITRON2_OS is a rolling-circle DNA transposon - a consensus DE sequence. XX KW Helitron; DNA transposon; Transposable Element; HELITRON class; KW HELITRON2_OS; helicase; replication protein A. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-15167 RA Kapitonov V.V. and Jurka J.; RT "HELITRON2_OS."; RL Direct Submission to Repbase Update (MAY-2001). XX DR [1] (Consensus) XX CC HELITRON2_OS encodes the 1813-aa OSHEL2p and 367-aa OSRPA2Hp CC proteins. CC OSHEL2p is composed of the rolling-circle initiator and DNA CC helicase domains. CC OSHEL2p (CDS positions 3937-4329, 4595-4741, 4825-6876, CC 6956-7621, CC 7713-9869, 10180-10323, 10388-10703): CC MAAVGVSFVSLLNAVAWHCRLPSVSYLWELDGNDILLAGVELALPSDESPSKTVSKFFWIATSDQPIVSH CC EMVAHQAVRFLFAKYGFAVHDYNLQTLLLYRQIAASAVDAALTASTHLARFRARYGPMDLSFLVFGLCLP CC PFLSSNLPSLGFSLYTMSGSSSQRVQRARESRTRRRASIGQGFLQAPVFSNVSPTAPRLTTVLPGLSGSI CC PSVPKPALSLPTISDVGVESQTGSIGSTSCPVHDSQPAPSRKRTLLDVPRHAATANRERRRLKRAGGDSG CC HLLQKILDGPVPTLDDVLPLPKDYIASLKALCPERSYYGGPSHECPYCGAAFWYQERVKRDSAVTQRRIV CC YNLCCRAGKISLPELRFPPAMLANLLRFDGDRRSRRFLRQIRSYNSLFAFTSLRADVDKSINNGTAPCVF CC KINGIVHHRIGSLLPQQGAPPKFAQLYIYDTENEVSNRMRVFDKESSTDEPDPFIVTELGAMLDEHNDLV CC KSFRFARKRLKDHGDEKIALRLLGCNSKDEVQYNLPTSGEIAGIIVGDYSNDKYTYDVVVQSCDSRLRRV CC SALHPSYMALQYPLLFPYGERGFHLDMYSTVEGSRLKFIADNQPDLRSECVQGIADAIDHGLESGDSVGQ CC KYVLPSSFTGGRHYMVQNYQDAMAVCRVFGSPDLFVTFTCNSKWQEIYDALLFEPGQVPSDRSDMIVRVF CC NMKVNEFITDIREGKTFGPVLAVLYTVEFQKRGLPHIHCLVWLAASTTDFNAATVDGFSSAEIPDVFTDP CC LGYALVDEFMIHGPCGEKNKSCVCMKNNQCSKHFPKSFQDETIMDEFGFTVYMRRNNGRYVVKNGIKLDN CC RWVVPYNMKLLKKYQAHINVEWCNKSNMIKYLFKYVTKGSDRTKVYFETTGNTANKPTDSNAAPRNEIDE CC YINARFLSTCESIWRTLEFDIHYRVPAVERLAVHEWFEANKKHSKARHLTYCDFPKEWTWDNSARCWRPR CC TPVEKIGRMYYINPVAGELYYLRMLLMIVKGATCFADIRTYEGVVYPTFRQACEARGLHENDNEWHLLFD CC EAIVSASSYQLRQLFVTVVMFCSIGNVRSLFDKYWTYFTDDIQHRVRKMLSNPSYVIPHDRLLSLLIKEL CC KSVFANSGGNIDDYDLPQSTARTDDDSGNRMVNEELALDSVALAAHADSIIPKLNSDQKRVFDTIMCRVN CC ESKPGFFFVYGHGGTGKTFLWNALISKVRSEKKIVLAVASSGVASLLLPRGRTAHSRFKIPIDINENSLC CC TIKRGTMLAELIQKTSLIIWDEAPMTHRRCFEALDRTLRDLLSEHAPSNGLVPFGGKVVVLGGDFRQILP CC VVRKGSRASIIDASITNSPLWSHAVLLKLTVNMRLLQCNLGEQQQQELEKFAQWVLALGDGKLPVSKRND CC ESEATWIDIPDDLLIKTTGDKIHSIVNEVFPGFASKYTDRSYLASRAIVCPNNSTVDDINDRMVDMVPGE CC VKEYLSCDTISKSSEHIPDFDLLYPTEFLNSISANNFPAHKLALKKGVTVMLLRNLNQSMGLCNGTRLLA CC LSLGQRLLECQILTGTNIGDRVFIPRIALTTTSPKWPFTLQRRQFPVRVCYAMTINKSQGQTLKRVGVYL CC KKAVFTHGQLYVAVSRSTSRDGLRILIEGDDEACSSKTRNVVYHEVLQTVDLMMGHTLLSDLSLGDDNER CC ICVRVSRFWAFCDQKDDDKILHFGLVLIDEKGTSIAAQIYPPCDEIFRPIITEGKVYYIKYFRVRKCNRQ CC YKPVDNCMSIYFTRWTKLEERVDPPAEIPLYTYSLSPFGGLRSRVGKKDSFTGSLTLLLLMHA CC OSRPA2Hp is similar to the RPA70 subunit of the replication CC protein A. CC OSRPA1H2p (CDS positions 11101-11235, 11313-11393, 11489-11606, CC 11690-11854, 11937-12443): CC SNAILNVALWGERATSFPADEVFVAGQKEPQIVIFVGTLVKGYGNGDVSLSGNSACKWYINADTPEVISL CC RNSIQATYSPIEWTDLPPAAPAYSNAEPKTIIQIKDLNPFEFQKHEFLVTVVIKKIDMEYSWWYTACDIC CC RRTARPYGNAYKCQNESCPPLVGASPRFKLSVVAGDDTADAKFVLFGRLAQCLIGRSVEILLEGNAAGKE CC AIPKEITNLLEENFTWKVAITENTMSSSNVSFQVNMIVGNGNSQNPAIPQSPSASQASSMVPSLALSPSV CC THELSVGQSTAAFAPSIGFSDPPATPSAGLNSPLVVGAKDKNDDVECQSKTPVQVLDEEDEDDDNLPLSQ CC MGGHSATKKTTSKSHNK. XX SQ Sequence 15167 BP; 3872 A; 3426 C; 3296 G; 4573 T; 0 other; tcggagagat taaaggggac cgcgaaatgg agccaccaca gcgctccggg gcttttttgg 60 ctggcgtgtt cgcttccggt gatatccacg tcgcccggcg ctggaggtgg cgttttgcaa 120 aaaagtcctc tatctatata ataatagcta ttagatccct cattgtatgg ccaagaccag 180 cgcgattcta aatatagggc cgcggtctaa gaaaaaagaa actcatgggt tttttcggaa 240 aaagaaaaca tccctatccc ttcccttcgc tgaaatcggc gctagaggtg gcgttttgca 300 aaaaaatcct ctatctatat aataataact gttagatccc tcattgtatg gtcaagacca 360 gcgcgaagga ggtaagattc taaatatagg gccgtgctct gaaaaaaaaa gaaagccatg 420 ggtttttttc gcaaaaataa aacatcccta tcccctccct tcgccgaaat cctagccgtc 480 actgttcacc cttcctcgct tctcctcgcc gcaatcgtct tccgcgggtg gcatcgctca 540 cgctgtcccc cgcccatctc cgcctttctt cctccgccca tccccgccgc cgtcacccag 600 ccaccttttc cctcctttct tcctccatga ttacagtcga ccaggtgatt ggacggtgcg 660 gcgccaaatc aatggtgtgg gggatcgatg ttctggtctt gattcctttt ctctcttatc 720 ttccctcctt tcttgcttat ggcatgccaa atcgatggtg tggggatcga tcgatgttct 780 ggtctcgatt tgctggttcc ccttctgttc aagctcgagt ctttgccatc gtgcggcacc 840 aagctccgcc gttctgcgcc gccagcgctg tttgccgatt acagatatga tgatattggt 900 tggcttccca tattcacttt tggtaagtta atccacagac agttccttcc tatgttcttc 960 gcttgcaaag aatgggctgc ctacgaaaaa acaaatttgt gattcctatg ttttcccctg 1020 gttgtgtttg catttatccg gaacaatgct aattctgatt tgtgatggtt agattttgct 1080 ttagttgtgt ttgtatatag cccgaacaaa cagatccgag gtgtttgttt ccccagtgtt 1140 ttccctgccg agacaacggc tctgccatag ttgcacagat gcaagttcat tgcctctttg 1200 gaatttaggt caggctaagc agaattaggc ctgctgggat tttttttgtt agccgacaac 1260 acctcaagca taactgcacg gatgcaaact gttagattac atgacccctt tagaattcag 1320 gccaggctaa ccagaactag gccaacatag aaaatttttc gttgatattt ggattttatt 1380 taacacccac atgagaatat ggaaagttct ctactttttt taagtttggg actaggtacc 1440 atgtcctaga tatcgaataa gagattactc tgaaaaattt tcttcataaa ctggtgtgaa 1500 tgggggagca tcagtcattg gattatacct gataatttag atgtacgttg tcttcctatg 1560 gcttttcatc taatgtatat gatttattat tcaatggaaa ggtactgtta tacatggaga 1620 taggttgccc ctttctttgg agggtggtag gtacagtcct attataaata acaaatgtga 1680 attcttcttt tatcttattc atgtaaaaag gattggttcc ctccatgtat ggtgctcatg 1740 tatgtcagag ctatatgcca tgtttcttgc tatctagcaa cctccttttg aaatttaggc 1800 taacaggaga aagtagggct gtcagttttt ttgtttaacg gcttttccaa catattcaga 1860 tgcaaagaca tttcagtgcc ttttaagaga ttaccaacag actgagatga ctatttcaaa 1920 gcaggacatg caacagcgat gttgttcacg catggaacag cttttagtag ggaaatttga 1980 gcgtgtctac cctttatacc tgaacaacat tattttcaca gcgagtaggt gtaaaaaggg 2040 atttgtaata tatggactta tgtctgccat ttccggtgtg ttgtctgcac taatctgcat 2100 gtcgcataaa acgcacgcac gcaccagttt ccaagattgc aattttgcaa gcaaatagaa 2160 tcagaaacct ggtgcacgcg aattcttaga atccccagag cgcgattgaa ggacatgtat 2220 ctgaaatatt aaagagaacc acaaaatttg ctaaattgtt gcatacacgt agcccttcac 2280 atttctatga gaccatattg gacggttaat gtctgagaga gtctggttta gaataggcat 2340 tggataaggc tagcttcata acgtgtttta agagggcgat cagggcaagg tttagggcat 2400 gaatcagaac atttaagaaa ctacagtacc gtaccttact tttatctgta aagttgctct 2460 ttttaatatt taaataattg gcaggttgga gacatcacca ggtttgttgt gctctatatg 2520 gtctgtgctg tgctcccctc tgtgcctggt tcgctgtggg gatgtgcgtg ggtgcctgtc 2580 taccaacgga gctgacgctc gatggcccac ctggtagtca ctttggtcca tggtgcgccg 2640 gtgctaggta gttccttccc tgcctgacag gctttccttt tggtacaccg cccactttta 2700 ctcaggacaa tgcactgtct ctctgtgtga gacacgtcta ttcgtggttc tcctaccaac 2760 gtggtgcacc atggtccccc atcacacagg tgctttccta tatgcgtgtt ccgtgcgcta 2820 ggagcacgtt cacctaacac cactgaaagt agctgagaaa ttatccgctg gttaatacca 2880 caaaaatcct gatgcacatg catctattcg ttgcagtcag cgacaggtgg ggtcaatttc 2940 gtgtgcttcc ccacctgcca tacactatgc ccatccggga ggttatagct gtatgatgcc 3000 atgttttttt gtgagcgccg cgcgctacgc caccgcgtga ggcaccatca aatcgacgtc 3060 catacacacc gtaccggcgt gcgcgcgagc accgatgccc acgtcatggt cttagccttt 3120 ccttctcctc ttcatacccg gttcgttagt tctgctcgag gctgttgctg gttcggttcg 3180 ttggtgtgct ttgctcccgt tttgcccctt ttcgctgttg cgcacatggc gagcaccagg 3240 tgatatgctg ccccatatgt ctttcgttct ccctgactgc tattctgaat gtgtatgcgt 3300 gtgcagggga cattgtggat actgcgtcga cacttaggat ttgccccgct catctaggta 3360 tattgcctaa ctcaagcttt gtgcttcctt attgtcctgg atcttgattg ttgtttttgc 3420 cttccagtgt acgactttag ctcctcgacg ccctgttcat ttcgctcgaa ggtcttggtg 3480 gggttcgcgc tgtaggccag gacgctcggc cgaggtgact ctgcccattg gcttcttcgc 3540 tagcccatgt ctgcacgcgt tcctcgatcc tacgaggtat atatccctcc tccttctacg 3600 gctttgatgt tcatttgttc ttctgcgttt ctttccattg cgcttggcct ttatttcgtg 3660 attttattgt ggttggtttg ttctgtgcct gctctatagt tactgacagt ataatatatg 3720 ttatatatgg aaaaatgtgt ctcagtgcct taccaggcac tgcatatggg cccatacaac 3780 catactagct gcagctgctt gcctctttct gatctttcct tttctcactt cagtgctttt 3840 gcatagtact gcctgatagt gctagaactg ctgtgcgtct ctacacgccc tttgaaatat 3900 ttctctgcga ttcgcagtgt tagctctttc tccaagatgg cggctgtggg agtttccttt 3960 gtttctttgt tgaatgccgt cgcatggcat tgtcgcctgc catccgtctc atacctctgg 4020 gagctagatg ggaacgatat cctgctagca ggtgttgagc ttgctctgcc atccgatgag 4080 agtcccagca aaaccgtaag caagttcttt tggatcgcta catctgatca gcctattgtt 4140 tcccatgaaa tggttgcaca tcaggctgtt agatttctgt ttgccaagta tgggttcgca 4200 gtccacgact acaacctgca gactttgctt ttataccgtc aaatagctgc ctctgcagtc 4260 gatgcagctc ttacggcctc gacgcacctt gctaggtttc gggcgcgcta tggtcccatg 4320 gatctgtcat gtgagtgtat tctgcgacag tgcattgctc tgtggtccaa ttttgttaag 4380 gaagaccact tcttctatag cacatatagg ccatagaagt agctactgca ccaaacaatt 4440 gtgttttagg atacgcgttt cgtaaaacta tgtgtaatag taccttttct tcagcgtatc 4500 tgtttctaat ggatgagtcg ttgtttggat ttgtatgtgc gtgcccattt atatattaaa 4560 tgctccatgg tttcttactg atgattctgc agttttggta tttggtttgt gcctgccccc 4620 cttcctgtcg agcaacttac ccagtttagg attttcccta tacacgatgt cgggtagctc 4680 ttcccagcgt gtacagcggg cacgggaaag tcgaacgcgc cgacgtgctt ctataggcca 4740 gggttcgtgc ttctttgcat tgcttaaaat gctacatacg attttttcga tgggcctcac 4800 ccaaaaaatg gttttccctt tttaggattc ttgcaggctc ctgtgttcag caatgttagc 4860 cctacagccc ctaggctcac cactgtcctc ccaggtctat caggttctat accgagtgtg 4920 ccgaaacctg ctctcagctt gcctactatc tcggacgtgg gtgttgagtc tcagaccggg 4980 tcgattggca gcacgtcgtg tcctgtgcat gactcacaac ccgctcctag cagtaagttt 5040 acaatgatct gcattctaca ccatagttct ctccaatgat gcttatgttt agctttccat 5100 gctgccgttg ggtctaggaa aaagaacact cttagatgtg ccacggcatg ccgctacagc 5160 aaatagagaa cgacgccgtt tgaagagagc aggaggtgac tcgggtcatt tgctgcagaa 5220 aattctggat ggtaaacctg ctgcacagcc attttttctt tcttcttttt tccccttggt 5280 acaagtgtgt tgtttgatag ccgtcatggc ttaatgaggt ctccttgctg tactttcaac 5340 tacataggtc cagtgcctac tcttgatgat gtcctgccct tgcctaagga ctatattgca 5400 tcattgaaag gtctgttcaa tgctgattag ttcttttggt acttttagct ccatctatct 5460 ccttgcttcg cacctaacaa atatgcagcg ttgtgccctg agcgatccta ctatggtgga 5520 ccgtcgcatg aatgccctta ttgtggtgct gccttttggt accaagaaag ggtcaaaaga 5580 gatagcgctg ttacacaaag aaggatagtg tacaacttat gttgcagggc tggtaagatc 5640 agcctgcctg agctaaggtt tccacctgct atgttagcga accttttgcg atttgatggc 5700 gatagacggt caaggcgttt cctacgccaa attcgatcat acaactctct ttttgcgttt 5760 acttccttaa gagctgatgt agacaagtcg attaataatg gaactgcacc atgtgttttc 5820 aaaatcaatg gtattgttca ccaccggatt ggcagcctgc taccacagca gggtgccccg 5880 ccaaagtttg ctcaactcta catatacgat actgaaaatg aggtcagcaa taggatgcgt 5940 gtattcgata aagagagctc cactgatgaa cctgacccat ttattgttac agagttaggt 6000 gctatgcttg atgaacacaa cgaccttgtc aaatccttcc gctttgctag gaaacgttta 6060 aaagatcatg gcgatgaaaa aattgcgctt aggctccttg ggtgcaactc aaaagatgaa 6120 gtgcagtata acctaccaac aagtggtgaa atagcgggga taattgttgg cgattattca 6180 aacgataaat acacatacga tgttgttgtc cagtcctgtg atagtaggct aagacgagta 6240 tcagctttgc atccatccta tatggcgctg caataccctt tgcttttccc ctatggggaa 6300 cgagggttcc acttaggtat aaaatatact gatttcccga gcataactgg aacatcacga 6360 cgctatgtga caatgcttga gtactatcgg taccgcctac actatagact aaataaacca 6420 aacccatata cgtgttgcgg tcgtcttagt gattctatat gtgtagatat gtactcgact 6480 gttgagggct cgagactaaa gttcattgct gacaatcaac ctgatttgcg atcagaatgt 6540 gtgcagggaa ttgcggatgc aattgaccat ggtcttgaat ctggtgattc tgtgggccag 6600 aaatatgtat tgccttccag ttttactgga ggccgtcatt acatggtcca aaattaccaa 6660 gatgcaatgg ctgtttgtcg tgtatttggt tcccctgacc tttttgttac tttcacgtgc 6720 aattcaaaat ggcaagagat atacgatgcc ctcctatttg aaccaggcca ggtaccgagc 6780 gatcgttccg acatgattgt gcgagtattt aacatgaaag ttaatgaatt catcactgat 6840 attagggagg gaaaaacttt tggcccagtc cttgcaggta ggggtcatga ctatggtgtt 6900 ttgcagctag ataggtgtat tgtggactgt ttctaacact taaaatcatt atgtagtgtt 6960 atacacagtg gagttccaaa aacgtggcct accgcacatt cactgccttg tgtggcttgc 7020 agcaagcacc actgatttca atgctgctac tgtcgatggt ttcagttctg ctgagattcc 7080 cgacgtattt actgaccctt taggttatgc tttggttgat gagtttatga tacatggtcc 7140 ttgcggtgag aaaaataaat catgtgtgtg tatgaaaaac aatcagtgct ctaaacattt 7200 ccctaagtct ttccaggacg agacaattat ggatgagttt ggcttcactg tatatatgcg 7260 ccgaaacaat ggacgatatg ttgttaaaaa tggaattaaa cttgacaata gatgggttgt 7320 cccatacaac atgaaacttc tgaaaaaata ccaagcccac attaatgttg aatggtgcaa 7380 taaatcgaac atgataaaat atcttttcaa atatgtaacg aagggatctg atagaactaa 7440 agtatatttt gaaactactg gtaacacagc aaacaagcca accgacagta atgcagcacc 7500 acgaaatgag atagacgaat acatcaatgc tagatttcta tccacttgtg aatcaatctg 7560 gcgtacccta gagtttgata tccattatag ggttcctgct gttgagcgtt tggctgtgca 7620 ccttccaaac atgaattttg tgcgatatca gaaaggaact gacctcaaaa aattacttga 7680 aagccctgct gcgaaaaaaa accatgttga cagaatggtt tgaagctaat aaaaaacatt 7740 ctaaggcacg acacctcaca tactgtgatt tcccgaaaga atggacctgg gacaacagcg 7800 cacgctgttg gcgtccacga acaccggttg aaaaaatcgg tagaatgtac tatatcaacc 7860 cagttgctgg agaactatac tacctacgga tgttgctgat gatagtaaag ggtgcgacgt 7920 gctttgccga tataaggacc tacgagggtg ttgtttaccc aacttttaga caagcatgcg 7980 aggcaagagg gcttcatgag aacgataacg agtggcactt gctctttgat gaggctattg 8040 tgtctgcgtc ctcctaccaa ctaaggcagc tgtttgtaac cgtggtaatg ttttgttcta 8100 ttggaaatgt gcgatctctt ttcgataaat attggacata ctttacagat gatatacaac 8160 accgcgttag aaaaatgttg tcaaaccctt cttatgttat cccccatgac aggcttctat 8220 ctcttttgat taaagaatta aaatctgttt ttgcaaatag cggcggtaat atagacgatt 8280 acgacctgcc acagtcaaca gcacgcacag atgacgattc tgggaatagg atggtcaatg 8340 aagagttagc tcttgatagt gttgctcttg ctgcccatgc tgattccatc ataccgaaac 8400 taaactcgga ccaaaaaagg gtatttgaca caataatgtg ccgtgttaat gaatcgaaac 8460 ctggtttttt cttcgtttat ggtcatggtg gaactggtaa aacattttta tggaatgcac 8520 tgatttctaa agtaaggtcc gagaaaaaaa ttgtcctcgc agttgcttca tctggggttg 8580 cttctctcct cttgccaaga ggacgcactg cccattctag gtttaaaatc ccgattgata 8640 taaacgaaaa tagtttatgc actatcaaaa gagggaccat gcttgctgaa cttattcaaa 8700 aaacatcact aatcatatgg gatgaagctc caatgactca taggcggtgc tttgaggctc 8760 tagatcgaac tttacgagac ttgctttccg aacatgctcc ttccaacggt ttggtgccct 8820 ttggtggaaa ggttgttgtc ctaggtggcg attttaggca gatattacca gttgtaagga 8880 aaggctcccg tgcttctata atcgatgcat ctataacgaa ttctccgctt tggagtcatg 8940 ctgttcttct aaaacttact gtcaacatga ggctcctaca gtgtaatctt ggtgaacagc 9000 agcagcagga gctagaaaag tttgctcagt gggtcttggc gcttggtgat ggcaagttgc 9060 ctgtgtcaaa aaggaacgat gaatctgaag caacctggat tgacatccct gatgatttgt 9120 tgataaaaac aactggtgat aaaatacatt ctatagtaaa cgaagtattc ccaggttttg 9180 catctaagta tacagaccgt tcttacctag catcgcgtgc tattgtatgc ccgaataact 9240 caactgttga cgacataaat gaccgaatgg ttgatatggt acctggtgag gtgaaggaat 9300 accttagttg cgacactatt tcgaaatcgt ctgagcacat accagatttt gatcttctgt 9360 acccaaccga attcttaaat tcaattagcg ccaacaattt cccagcacat aaacttgcgc 9420 taaaaaaggg tgtcacagtg atgttgctac gaaacctaaa tcaatcaatg ggtttatgca 9480 atggaaccag gttgttagcc ctttctcttg ggcaacgact cttagaatgt cagatcttga 9540 ctggaacaaa cattggagat agggtgttca taccaagaat agcgcttaca actacgagcc 9600 ctaaatggcc tttcactctt cagaggaggc aattccctgt gcgtgtatgc tatgcaatga 9660 caatcaacaa aagccagggc caaaccctta aaagggttgg cgtatacctt aaaaaagctg 9720 tcttcacgca tggacagttg tatgttgcgg tgtctagatc gacttcaaga gacggcctta 9780 ggattcttat tgagggtgat gatgaggcat gtagttccaa gactagaaat gtggtgtacc 9840 atgaggtgct gcaaacagtg gatctgatgg tacatcatgt attgcccgat cttatagctg 9900 ttacccatga atatcttaag ttccaacaat ctaacacgct gctacgattc tgttccgtag 9960 gatgctgata cctagctgaa actcgagact ccgatgcttg ctgttgtttg atgttctgcc 10020 tgattgtttt cttcatttct tcgtatctta ttcactgtgc cgctattgtt ttcattttgg 10080 gtcacgtttt ttgtaagttt tccttgctgt tttgctttcg gtttttttaa aactacagca 10140 aactggctac tgacaaattc tttgttaatt tccttgcaga tgggacacac cctgctctct 10200 gatctctccc ttggtgacga caacgagcgc atttgtgttc gggtttcgcg attttgggct 10260 ttctgtgacc aaaaggatga tgacaagatt cttcactttg gcttggtcct gattgatgag 10320 aaggtcagat ctgtgcaacg attaccttga tttgtttagt tcacacaagg tgttttctga 10380 ctttgttatt gccacagggg actagcattg ctgctcagat ttatccccca tgtgatgaga 10440 tattcaggcc aatcatcact gaaggcaagg tgtactacat taagtacttc cgtgtgagga 10500 agtgtaacag gcagtacaaa ccagtcgaca actgcatgtc catctatttc acaaggtgga 10560 ctaaactaga ggagcgtgtc gatccaccag ctgagattcc tttgtatact tattcactct 10620 caccatttgg cggtcttcgc tcacgtgttg gcaagaaaga ctcattcaca ggtagtctca 10680 ctttactgtt gctaatgcat gcatagtact tcatgttatg ttaattggca aatggctgat 10740 attgttccct ttatttgtca aaatcaaaaa gatatcattg gaattattac tcagctgtcg 10800 cccgtgactc cgcttcaagg caccgtaaag aggagtgtct tcatccgcaa cactgagtta 10860 gccccaactc ttgcatacta aaataaaata gattcatcag gactaactta atcttgattt 10920 gtttatatgg ttccctttta tctgagctaa ccaattacca aaagagatac aactttcccc 10980 ttatcttcac agagattctt aatacaacca ttatacctct aacacagcca aaagatacgc 11040 cagatacatc tggccacctg cattttggtt ttcatgcatc tgttactgca tatttcctat 11100 agcaatgcaa tcttgaatgt ggcgctttgg ggggaacgtg caacaagctt tcctgccgat 11160 gaggtgtttg ttgctggtca gaaagaacca cagatagtaa tcttcgttgg cacccttgtg 11220 aagggctatg gtaatgaata ttccaaatac tcaaccatgt ttctacatcg tagttccaat 11280 ggttccatgc ttaatagaat atatgttctc taggcgatgt ctctttatca ggtaactcag 11340 cctgcaagtg gtacattaac gcagacacac ctgaggtcat ctctctgaga aacaggtctg 11400 tactaaggtt tctatacaaa gtgcatatcg ttttcttaaa tgtagcttgg cttatatata 11460 catactaaca ctgtcgttat gtgtacagca tccaagcaac ctatagtcct atagagtgga 11520 ctgatctacc tcctgcagca cctgcttata gcaatgctga gcccaagacg attatccaaa 11580 ttaaggatct gaatcctttc gaattcaaga tacattgtgt gatttataca cttttgctat 11640 ccaaattccc tagaatgagc tataaccatt gtttcatacc tcttttgtgc agaaacatga 11700 attcttggtt actgttgtca tcaagaaaat agacatggag tactcttggt ggtacactgc 11760 atgtgatata tgcaggagaa cagcaaggcc atatggaaac gcatacaagt gccagaatga 11820 gtcatgccct cctcttgtgg gagcatcacc taggtcagta acattgcttt ccggaaccac 11880 acttatgtca aaccaaagaa gataagccaa ttctaacatt actctatgtt tgcaggttca 11940 agcttagcgt tgtggcaggt gatgacacag ctgacgctaa gttcgtgctc tttggccgcc 12000 tagcacagtg tcttattggt cgatcagtgg agattctgtt agagggcaac gctgccggca 12060 aggaggccat acccaaggag atcacaaatt tgcttgagga aaatttcacc tggaaagttg 12120 ctattaccga gaataccatg tcttcaagca atgtctcatt ccaagtgaat atgattgtcg 12180 gaaacggcaa cagccagaat cctgccatcc cacaatctcc atctgcatct caggcatcct 12240 ccatggtacc ttctctagct ctatcaccaa gtgtaacaca tgaactctct gttggccagt 12300 ccacagcagc atttgctcca tccattggat tcagtgatcc gcctgccact ccatcggctg 12360 gattaaacag tccgttggtt gttggagcca aggacaaaaa tgatgatgtt gaatgccagt 12420 ccaagactcc agttcaggtc cttgacgaag aagatgaggt tagcctgctt agcaagcata 12480 cccaaccttt tattcctgag tctttctgtg ctaaaacttt cctcgctaat gatttagctg 12540 atcctatagg atgatgacaa tttgcccctt tcccaaatgg gtggtcattc tgctactaag 12600 aaaaccacat ccaagtccca caacaaaagg ttacagctct tctcagtctt ccatgctttt 12660 agttaaagta gcctagcttt gctctgttta gctaactatg gttgcaaaac agggcaaggc 12720 catctcctgg cactggcaca gctaagaagt tgttcaaaga aagtggtgac gataccgctg 12780 atggcaggta ctacagattc agagtgatta gcattggcat ttgttttctt atatgcaaaa 12840 tgacaactga ttgttgctag attatataat tgacaaattt tcatctgcaa ttcagcggcg 12900 agaacaaggc ctgatgcagc aaaggaatgt gtacgctttt gttttgcaca gttgtatcag 12960 actcggcatc ggtctcatgc tctgcttgca tgggtacctt aaccaagctt ctttagaacc 13020 actctacagt gtttcgttgg ttaatattgt gccatgcatt tacaaactgt gctattttgt 13080 cgctcgctat agacctttga gcatggttgt agccagacgc ttccttttgt aaagacttaa 13140 cagcgaccct acgcattatg tggctaggat tctatgttat catgcatagc acacgataaa 13200 cacgaatgct tgctgctgta cccagtatga tgttacttac gcaatagtag ctctgtgttt 13260 cgggatacat atatattcca gctcagtgtg tatttcgact gttgcttgct tttagcctat 13320 ttctaccttc gattcacaac ctgcgagtat tgattcggta cgcatcgagc aactattcac 13380 atacactctc accgcattct atcccaatcc aacagcacac tgtgcaagaa tgctcatgag 13440 aaggcatgta tctaactccc aaccaccagc cgtccggtct aggtgtgccg ccccatgcca 13500 ccttgccagc acgtttgcat gcaagaaaag gctacacacc tacctattcc cttcgaatag 13560 acagcacagg gtgctagcac ggtacatcct acactttctc tttatcctct tccatggtta 13620 gcttctttgc ctgcaggaca cactgttgct gggtagagcc caaacatcga acaagagctg 13680 cgctctgaag aagcctttca aggggagaaa acaaccgccg cttcgttcag gtattaatca 13740 acttcggaaa ctcttcttca tgtggcttta tatgcatcag tgctatacat actatgttta 13800 gaaaaacaaa gcgacaacaa acagattggt taaaacacca ttcatttcct cgctgtttat 13860 ttgctatctc acattgtgaa atctttgctg cctattgatt tctggatggc tagatcaagg 13920 ttcaacgctc tttcctggga aaaggagcag ctgaggatgg agtttggcta tggtggtgag 13980 ctcagcgtag cacaacctcg gcggccttct tcctacggaa cacagcgacc attggttgcg 14040 acaaagttct cagggtgtgg agagatatcg cagctgcttg ctgatgtcat ctatcagcag 14100 gctgttgttg tgaaagtcct tggagctggt gatccaaaca gcacaaggat atctgctatg 14160 gtaagtgctg tgtgcaggtg tgaaattgat gattttgctc tgctaccctt tcgtccaaag 14220 atgtatattg ttctattcat ggatgctgac aagcaacaag aaagggctga aatggcctgc 14280 aacaaaaaaa aattcacgtt caagacaact cgcctcgagt ttgagccttt caagatgaat 14340 cttcatagtg ttacaaaccc actgcgtcaa agggttatac ttgcccttga aggagtgccg 14400 ccggaatcat ggaataagca ggccataaca gagctaatgg acaacagttg catggttgaa 14460 gagttgtatg gagagcacca tatacatgac ctttctgttt tcaagctagc tgcctggacc 14520 accgactgtg accttatacc caaggcgatt agatggaaca ttgagaccaa acagggagca 14580 cgagcatcag ccaatgttag ctggaaccac aacgcagctc actctctgat tctggtacac 14640 atggaaaaac tattcgacta caccgacgaa gacagtggca gtgatagcga tggtgaactt 14700 cttagacaat atgagcagca aaggcctcgc ctacctgttg tcaagacatt tacctgggta 14760 tcctgtcaaa ttgacctaga caatggacca attgaaggtg gtccaccggc aatcctccca 14820 cgtcggcttc ctctcgaatt tcgcaggcat ggccgtcagt agtcttccgc atgattcctt 14880 gcctatttat ctatgttagt tgtgatgctt ccatgtatgc tgttataaca tgatctaaat 14940 tatgtattgt ccttcgcgaa cagtgttcac atccatttca tgtatttttt ttcctgctta 15000 atccattata gttactaatc acaaactgaa tggtctgaat gacaatgcta tagccaatga 15060 aatgagtagg ctcttcaggt ctttctaatg ctttcacaga ttcttcttat caacttcctc 15120 cttttaaagc accggtaggg cgccgcgaag cgcgccgcaa gttctag 15167 // ID SC-3 repbase; DNA; ORY; 5747 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 04-AUG-2002 (Rel. 7.07, Last updated, Version 1) XX DE Rice copia-type retrotransposon SC-3. XX KW Copia; LTR Retrotransposon; Transposable Element; KW COPIA superfamily; SC-3. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-5747 RA Jiang N. and Wessler R.S.; RT "SC-3: a copia-type retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 35-35 (2002). XX DR [1] (Consensus) XX CC SC-3 is a Copia-type retrotransposon. It has 393bp LTRs. XX SQ Sequence 5747 BP; 1149 A; 1715 C; 1775 G; 1108 T; 0 other; tgttggataa gtctttgtga tccttggttg tgattcttct ttttgctttt ggatagtttc 60 acctttttca ggacagcatc taccctttag catatttttc aggtgctagg acagctgcgg 120 ttagtaggac agcaacagtt agcatcttct ttatgcctcc tttatgcttt attcagtttg 180 gatgccctct aggacagcat cccattcaaa tttcgaattt tagactagga gggtgtagca 240 ataggctagc agccagctct ggctatatat atgtatccaa cctccctcgg gtaggtatgg 300 cttttgtgtt tttgtgaatg aagaaaacca gaaaattgcc ccatctcgag tgccatcctc 360 ttctcaatga gagtaaccat tgaaattcta acatctggta tcagagccac actttcctgt 420 aggctaaaca tctcttgttc caccccttcc caagctcggt tgagctctca gccagcagca 480 gcagcactgg ttgctcctcc ttcccctttc ccttccccct ctccacgcag cagccccccg 540 gaggtgcgcc atgtccgacg ctcggtctcg gcgtttggtc gcctcgagca cttggcgtca 600 gcaggacgcc gagctcgccg cagcagaaga gcgcaggcga gcaacggctc agaccgctgc 660 agcagcagca gcgagggtgg ccaaactggc ggcagtggag ttggcagcag ccagggcgga 720 ggcggaggcg gaggcggcgg aagatgcggc acgtgcggcg gaggtagagg ttgagacctt 780 gcgcagcagc atcaacggct ccatcgccgg cgacatcacc gccgacaggg agcttgagga 840 gttggcaaga ggaagggcat gggagcgggc agagcggtgg gcagcagccc acctccacgg 900 cggcggcggc ggcccaaggg accgcgcgcc cgccgacggg aacccagacg ggcgctggcg 960 tgccggcggc agcccggagc ccgcacgcgg ccctcgcagg cagcgcggct ctctctcccc 1020 tgactggcgc catggtcacc acggcgtcca gacggtggtc agggactttg gtcccggcgg 1080 tgggtggcct accctcacca aaaccaacta catcgagtgg gccgcggtga tgagggtgag 1140 gctccaggtg cggcacatgt gggaggcagt ccggtacggg cgacgtcgac tacgacgagg 1200 atcggcgggc actggatgcc ctcatcgctg cagtcccgcc cgagatgcag ttctcgcttt 1260 cccagaagcg gactgccaag gaggcctggg acgccatcgc tgcggcacgc atcggcagcg 1320 accgcgcccg caagtccaca ctgcaggcac tccgcaagga gtgggagaac ctgcccttca 1380 agccaggtga ggatgttgat gactttgctc tccgtctcaa cactctcttg cagaaaatgg 1440 tgcagtacgg cgacgacacc tacgacgagg agagagctgt cgagaagctc ttccgctgtg 1500 tccctgagaa gtacaggcag atcgctcgct cgatcgaatc tctgctggac ctctccacga 1560 tgtcgatcga ggaggcgtta ggtcgcctca aggtcgtcga tggtgatgag ccacagcctc 1620 tctcggggcc catcaccatc ggcgggaagc tcaatctcac tcgggagcag tgggaggcct 1680 ctcagggtga cgggaggaag ggggagtcat cttccccgac aggcggccgt aagccgcgca 1740 aggcgcgggg aggtgtccag ctacggtggg cgcgaagacg tgccgagggt ggcgcccgca 1800 gaggcgccca gggcgttgcc accggcaacc acaagccggc acgagacaac gcctgccgca 1860 actgtggcaa gcttggccat tgggccaaag actgtcgaca gccacgacgt ggccaggccc 1920 acgtcgcacg ggtggaggag gaagagccgg ctctgctcct ggctcatgca agcatcgagc 1980 tacctccagc ggcaccggcc gcagcggctt tcctccacct tgatgagccg aaggtactcg 2040 tctccctctg caacggctcc agcaacgaca aggctgatgg gtggtacctc gacaccggcg 2100 ccacccatca catgaccggc tgacgggagt tcttcaccga gttcgactcc agcgtccaag 2160 gctccgtcaa gttcggggac gcctccggcg tggagatcaa gggtgttggc tccgtcacct 2220 tcactgccaa gtccggtgag cacaggctgc tcaccggagt ctactacatc cccgcgttga 2280 ggaattctat catcagcgtg ggacagctgg atgagaacgg ctcacgcgtg ttggtcgagg 2340 acggactcat gaggatttgg gatcgccgtc gtcgccttct tgccaaggta accagaggca 2400 ctaatcaact ctacatcctc agcgcgcagg tcgcacaacc agtttgcctc gccgctcgtc 2460 gggacgacga ggcgtggcag tggcacgagc gcttcgggca cctccacttc gaggccctga 2520 agcagctcag tgctaaggag atggtgcgag gcatgccgtg cctggaccac gtggagcagc 2580 tctgcgacgt ttgcgtggtg acgaagcagc ggcggctccc ctttccccag cagacgagct 2640 tccgagccaa ggagcggctc gagctcgtgc acggggactt gtgtggccca gtgacagcgg 2700 ccacaccagg aggacgacgt tacttcctgc tgctcgtcga cgacctctcc cgttacatgt 2760 gggtgatggt cctcggcagc aagggagagg ctgcggacgc catcaggcat gcgcaagcta 2820 ctgcagaggc ggagtgcgac cgcaagctgc gcgtgctgcg caccgacaac ggcggcaaat 2880 tcagttcgcg tcgtactgcg ctgatgaggg cattcagcgc cactacacca cgccgtacag 2940 cccgcagtag aacggcgtcg tcgagcggcg caaccagacg gttgtgggga tggctcgggc 3000 cctcctcaag cagaggggga tgccggccat cttttggggg gaggcggtgg tgacggccgc 3060 ctacatcctc aaccgctcgc ctaccaaggc cctcgatggc aggacaccgt acgaggcttg 3120 gcatgggcgc aagccggcgg tctcccacct atgggtcttc ggctgcctcg cgttcgccaa 3180 ggagcttggc cacatcggca agctcgacga caggagcacc ccaggggtgt tcatcggcta 3240 cgcggagggc tcgaaggcct accgcatcct cgacctggag acacagcgtg tgcgcactgc 3300 gcgcgacgtt gtgttcgacg aagggcgagg gtgggtatgg gacaaggcgg tggacgatgg 3360 ttcgactccg atgtacgacg acttcaccgt cgagtacgtc cacttcgagg gagctggggg 3420 agtaggcagc tcttcttcat cgagcgtgtc taccccagcc cccgaatctc caccgactcc 3480 gacaccaaca caccctcggg ccacgacttc gactacgacg agctcttcgt cgacaccacc 3540 ccagccagtg actccacatg ctccagcacc aacagtcact cctccaagca cgtctacttc 3600 gacgccagct cgtgttgagc gcagcccggt ggagttcgct actccgctct cccacgacgg 3660 ggagcgcatc gcataccacg acggtgagca gctacggtac cgtacgatgg aggatcttct 3720 cggcgaccag ccggtgccgg gactggtgcc tcgcgaccta gaggcgcagt tgcaccttgc 3780 gtgcgacgac ggtgagcctc ggtcttttgc agaggccgag aaacacgcgg catggcgtgc 3840 cgcgatgcag tcggagatgg acgcggttca ggagaaccgc acctgggagc ttgctgacct 3900 ccctcgtggt caccgcgcga tcacccttaa gtgggtgttc aagctgaaga gggatgaagc 3960 cggagccatc gtcaagcaca aggctcgctt ggtggcacgc ggtttcgtgc agcaggaggg 4020 gatcgactac gacgatgcct tcgctcccgt ggcacggatg gagtccgtgc gactccttca 4080 tgcgctggct gctcaggaag gctggggcgt ccatcacatg gacgtcaagt cggcgtttct 4140 gaacggcgac ttgaaggagg aggtctacgt gcaccagccg ccgggatttg tgatccccgg 4200 caaggagggc aaggtgctac gcctgcacaa ggccctctac ggcttgcggc aggcaccgag 4260 ggcgtggaat gccaagttgg attccacgct caaggggatg ggcttcgagc aaagcccaca 4320 cgaggcggcc atctaccggc ggggcaatgg aggaaatgcc ttgctggtgg gtgtctacgt 4380 cgacgacttg gtgatcaccg gcaccaagga tgcggaggtc gcggcgttca aggaggagat 4440 gaaggccacc ttctagatga gtgatctggg gcctctctcc ttctacctgg ggatcgaagt 4500 gcaccaggac gactccggga tcacgcttcg acagaccgcc tacgccaagc gcgtcgttga 4560 gctggctggg ctcaccgatt gcaacccagc tctcactccg atggaggaga gactgaagct 4620 gagccgcgac agcacggcgg aggaggtgga tgctacacag taccggcgtc ttgtggggag 4680 ccttcgctac ctcacccaca cacggccgga cttggccttc tccgtcggct acgtcagtcg 4740 gttcatgcag cgaccgacga cggagcacca gcaggctgtg aagaggatca tccgctacgt 4800 tgcggggact ctcgaccacg gtctctacta cccaaggtgt cctggcaagg cacacttcgt 4860 cgggtacagc gacagcgacc acgccggcga catcgacacc agcaagagca cgagcgggat 4920 tctcttcttc ctcggcaagt gctcgttagc tggcagtcgg tcaagcagca ggtggtggcc 4980 ctgtccagct gcgaggccga gtacatggcg gcctccgccg cttcgaccca ggcgctctgg 5040 cttgctcgac tgcttagtga tctcctcggc agagacactg gaacggtgga gctcagggtg 5100 gatagcaagt ccgctctggc cctgacaaag aaccccgttt ttcacgaacg gagcaagcac 5160 atccgggtga ggtaccactt catccgaagc tacttggaag aagggagcat caaggcgagc 5220 tacatcaaca ccaaggacca gcttgcggac ttgctcacca agcctcttgg gaggatcaag 5280 ttcctcgagc tctgctccag gatcgggatg gcccaacttc cccacaagac gacgcacaag 5340 acttaggggg agaatgttgg ataagtcttt gtgatccttg gtcgtgattc ttctttttgc 5400 ttttgggtag tttcaccttt ttcaggacag catctaccct ttagcatatt tttcagttgc 5460 taggacagct gcggttagta ggacagcagc agttagcatc tcctttatgc ctcctttatg 5520 ctttattcag tttggatgcc ttctaggaca acatcccatt caaattttga attttagact 5580 aggagggtgc agcaataggc tagcagccag ctatggctat atatatgtat ccaacctccc 5640 tcgggtaggt atggcttttg tgtttttgtg aatgaagaaa accagaaaat tgccccatct 5700 cgagtgccat cctcttctca atgagagtaa ccattgaaat tctaaca 5747 // ID SZ-7IN repbase; DNA; ORY; 10293 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE Rice gypsy-type retrotransposon SZ-7. XX KW LTR retrotransposon; GYPSY superfamily; internal region; SZ-7IN. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-10293 RA Jiang N. and Wessler R.S.; RT "SZ-7IN: a gypsy-type retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 122-122 (2002). XX DR [1] (Consensus) XX SQ Sequence 10293 BP; 2872 A; 2865 C; 2490 G; 2066 T; 0 other; gtggcgcgcc aggtaggggg atttggtact caaggttcta ctactatgtc atccagcttc 60 gtcgacaaca acgtcaacac cagcctcagc caagcgctcc ctgcttcaac aatgctggta 120 tggactcaag tcggcgaaat cgtcttcccg ttttacacca cgacgctgat ctcaaccggt 180 cctccaatga ccggaaacga gaacgcagtg gctacaaacc aaggcgactt catgtcgaaa 240 aatccacctg tcgaaacgga gaacggatca tcgacgacat ccaagctcgg gaaggattct 300 gatacggcca aaccttgccc ttctgacatg aaccacgagc cggcaaagat gacttccgaa 360 gccacaaggt cttggtgtcc tatccacaaa accaagaaac acaccctgca agattgctgg 420 gttttcctca acgtccatgc tgaaattcgc gcatgcaaag aacgtggaat tcagcgtact 480 tctccaactc gggatgtcta ttgtcctatt cacaagacaa agaatcacaa cctctcgagc 540 tacaaagtct tcctcggcgc catgaaagct ccgtctcctg agtcatacgt ccccgtcagg 600 gataacggca aggaacaagg agcgactcca gcctcagatc gattcgttga ggtaatcgat 660 atcgatcctc atgaaccacc ggtcttacat cttctcgaag actatgggtc atcgacaatg 720 agcgtgccgc aggaggtatt ggctatcgat gacgttggca cgtcaacgca agccaacgca 780 gaagcggcga atcaatcgac tactccagcc caacacatca gggccgttca agccttacta 840 agggaaactc cttacgatcc cgttctgaat gatgacctcg agcgttgaca gaacgactac 900 gggaatcggt gaccaacctt agcaacgcgt ttgaagaagt cgctaccgca gcgcaccaag 960 atcagccgcc aactagcgac gccaatggtg aagatccgga acggagggaa tcacctcaac 1020 gagccactcc tccacctcgc ggcgctggcg atctccgaga tcaaatcaac ggccgccgag 1080 aagcacgacg cacacgagac aatgtaaatc gctctcggcg tcatgtctct tcacggcgcc 1140 atgataacgg aaatcgagga gaccgctcaa acgaggaccg ggatcacgac aaccaccgca 1200 atcgcaacga tcgcgaatga cgggggccag acaatactgg tcatggccgc cgccgtaacg 1260 acgacaataa tggagatcgg cgccgagaca acagcgagag acaacgatag gattcccgag 1320 atccaggccg tcatactcgt aatcgtacgc cggaaccaag tgacccatcg tcatcatcat 1380 catctgcgtc ctcctcatcg tcagacagac atccacgaag gacacacgac cgctgacaac 1440 ccaccgcccc caacgctggg tgcagggctt tcggtcgttc cctacgtgat gtccgatggc 1500 ctgagagatt ccgacccgga gcaattgaaa agtatgatgg gagcaccaac ccagaagaat 1560 tccttcaagt ctactccaca gtactctatg ctgccggagc agacgacaac gcgctagcga 1620 actatttatc aaccgcgttg aagggttctg cacgttcatg gctgatgcat cttcctccct 1680 actcaatctc ttcgtgggca gacctgtggc aacaattcgt tgccaatttc caaggaacgt 1740 acaagcgcca cgcgatcgaa gacaacctac acgcgttgac acagaactca ggtgaatcat 1800 tgagggaata tgttcgacgc ttcaacgaat gcagaaacac aattcctgaa atcaccgacg 1860 cttctgtaat ccgcgccttc aaatccggtg tcagagatcg ctacactacc caggaattgg 1920 cgacaagacg catcacaacc actcggaggt tattcgagat cgttgagcga tgtgcccatg 1980 tggacgatgc gctaagacgc aagaacgaca agccgaagac cgggggagag aagaaatcag 2040 ccacagacgc atctgagtca agcaagaaga aaaatcgcaa aaatgggaaa aggaaagctc 2100 aagcggaagt cctcgcagca gaatacgcga accctcccaa gcgcccagac ccacaaggca 2160 gcgacacaaa gaaatcttgg tgccccatac acaagacgga cagacattct ctggaagatt 2220 gccttgtttt caaaaagtcg ctcgagaagc acatggcgtt tgaaaaaggc aagcgagtac 2280 gcattgtcga gaagaacgaa gagacggctc ctcacgaatc ggattatgcg tatccagact 2340 ccgacctcca catctcacac attttcggcg gctccacaac gtactcctcc aagtgagaat 2400 acaagaaagt ggaacgtgaa gtctgttcga catggcgggg ggctgcaccc aagatgaagt 2460 ggtctaagca gaaaatagag ttctcgaaag aagaccaccc caagaccgcc gttatcccag 2520 gacgatatcc gatcgtggtc gaacccatta ttcggaacat caaagtagcg cgagttctca 2580 tcgacggtgg cagctcgatc aatcttcttt tcgctagtac tctagacgca atgggaattc 2640 cgcaaagtga gttgacacca actgatcaac ccttccatgg aattactccc caatcatcat 2700 ccagaccttt tggcaagatt acgttgcctg tgactttcgg ccaagccaac aacttccgaa 2760 cagagcagat caccttcgat gtcgttgaat ttgatacagc ttacaacgcc atcatcggga 2820 gaactgcact tgcgaagttc atggccatat ctcactacgc gtatcaagtg ctcaagatgc 2880 cgggaccgaa gggaacaatc actattcagg ggaacacaaa gctggcagtg cagtgcgaca 2940 agcggagcct cgacatagtc gagcaaacgc ccagcccacc cgccacaact gagccaccca 3000 agaaagtgag caagacaaat aagacgccga agccggacgg cgccatcaag atcgttccac 3060 tctccagtgc caatcccgac aagactgtca agatcggggc gacactaaac gagaaatagg 3120 aactcgcgct catcaccttc ctccgcgata atgcctgcat gttcgtttgg caaccgtccg 3180 acatgccggg ggtccctagg gaggtgattg agcacaaact aatggtgcga cccgatgcca 3240 agtcagtaaa gcaaagactg cggagatttg caccagaccg gaaacaagcc atacgagaag 3300 agctcgacaa acttctcaaa gctggcttca tcagagaagt acttcatcca gagtggctag 3360 ccaatccagt catggtgcgg aaggccaatg gaaaatggag aatgtgtgtc gacttcaccg 3420 acctcaacaa ggcgtgtccc aaggatcact ttcctctccc tcgaatagat caattggtgg 3480 attcaacagc cggttgcaag ctattgagct tcctcgacgc ttactttggc taccaccaaa 3540 tcagcatggc aatagaggac gaagagaaga cagcattcat catgccgttc ggggtatttt 3600 gctatgttaa gatgccgttc ggactgataa ccgtcgggaa tactttccag cgcacggtcc 3660 agggcgcact tagcaaccag cttggcaaca atgttgaggc ttacgttgac aacatcgttg 3720 tcaaaaccaa gacaagcgac tcattgattg acgatctgcg ggaaatgttc gacaacctcc 3780 gacgatatcg cctcatgctc aatcctgaga agtgcacgtt cggagtaccg tcgggcaagc 3840 tactcggatt ccttgtctct ggcagaggaa tagaggcaaa tcccgagaag atcaaagcaa 3900 tcgagaacat gaagtcgccc acgagactca aggaggtaca aaagctaact ggatgcatgg 3960 aagcactaag cagattcgtc gctaggatgg gagaacgagc acaaccttcg ctctattgaa 4020 gaaacaagac aaatttatat ggacacagaa agccaaagag gcatttattg cactcaagcg 4080 ctacctatca aacccccctg tacttgttgc tccccaacct aatgaagaat tattcctcta 4140 tattgccgcc acgccatatt ccgttagcac tgtcattgtt gtcgagagag agaaagtaca 4200 gcgaccagtt tattacatca gcgaagctct ccatgacgca aagacaagat acccacatat 4260 ccaaaaaatg ctttacgcag tcatcatgac atcaaggaag ctgcgccact actttcaagc 4320 tcacagagtc acagttgtat cctccttccc ccttggagaa gttgtgagaa acaaagacgt 4380 tgtcggccgc attgcgaaat gggtagtcga gctaagccaa tttgatgtcc actttctgcc 4440 gcgaatagcc atcaaatccc aggtactcgc cgacttcgtt gccgattgga ctatgccgga 4500 caacaaatca gacaaccaag gcgacaacga aacatggaca atggcgttcg atggcgcact 4560 caacagccaa ggagcagggg caggatttat cttgacgtct ccttccggag atcaattcaa 4620 gcacgcaatc cacctcaact tcagggcgac caataacact gcagaatacg aaggactact 4680 cgccaggata cgagctgcag ccgcacttgg cgccaagcga ctaatcgtca aaggggactc 4740 cgagctagtc gcgaaccagg tgcacaaaga ctataaatgc tctaaccccg agttatccaa 4800 gtatctcgta gaagtcagga agctagagaa gaggttcgat gggatcgagg tccgacacgt 4860 ctatcgcaag gacaacgtcg agccagacga gaaccactcg aacccggcac ctttctcgat 4920 atcctgacga agccatcggt gaaagaagtt agcggcgaag ttagcccgaa cacccccgac 4980 atcagctcgg aggtcaccga ggcagaacgc gccgttgctg acatcgaaac cacagacgac 5040 tggcgcatcc cattaatcaa attcatcagc agcgaggagt tgcccgagga cgatacagag 5100 gccgagaaaa taacccgtaa agcaaagatc tactgtatgg tcggtaacga tttatacaaa 5160 aaagcgctaa acggggtact tctcaaatgc gtctctactg acgacgacag acacctcctc 5220 ctcgacatac atgaaggcat atgtgggtca cacgccgccg gtcggacatt ggtcggcaaa 5280 gcttttcgac aagtcttttt ctggccaacc gcccttaaag atgcattcga catggtccag 5340 cgatgtgaag cctgtcaatt ccacagtaaa cacacaaagc tacccgcgca agcgctccag 5400 actatccctc tgacttggcc gttctcgtgc tgggggctag atatacttgg gccattccca 5460 cgaggacagg gcggctacag attcctattc gtggcgatcg acaaattcac caaatggata 5520 gaagcagtgc ccacggggga aatcaaggcc gacaacgcca tcaaattcat cagagggata 5580 ttctgcagat acggactact gcaccgcatc ataaccgaca acggctccca attcatcagc 5640 accgacttcc aagattactg catcgggttg ggagtcaaaa tatgtttcgc ctcggtctct 5700 caccctcaaa gcaacgaata agtcgaaagg gcaaacgaca tagtactaca agggatgaaa 5760 acccgcgtct acgacaggct catgtcacaa gacaaaaagt gggttgaaga actcccatca 5820 gtactatggg ccgtacgcac cacaccgaca acgtccaata aggaaacacc cttcttcctc 5880 gtgtacggct ccgaggccat gctccccggc gagctacgac atcagagtac acgagtacag 5940 aagtattcca acgagaacca ggaggaacag tgagacatcg atgtaaatct tctcgaggag 6000 catcatgagc gagttgccgt ccgagcagcc agctatcaac agtccctccg ccgttatcac 6060 gagaagcgca tccgagcacg catactttcg atcggcgact atgtcctccg acgagttcaa 6120 acccaagcag ggcaaaacaa actctcacca aaatgggaag gaccttacac aatcacacaa 6180 gtcttgcggc caggcgcatt caaaatcgca gacggtgatg gtcgcgaatt agcaaattct 6240 tggaacattg accaactacg taaattctat gtatgagtca ataccactgt acctgtaagt 6300 acccttatag tatcaataaa gcctatttct aggtcccata tcacaatcaa agtgttttca 6360 cccgatgatc ccttactctg atgacaccta gcgttgaaac ctgtccttat gtccctttac 6420 gccgtctcga caaggcctcc gaggaaccta agggatcttc ggctggggat gcccagagcc 6480 gataaggcct tgtcagatcc tgtagagaca aaagaccatg taagatctgg tcgtgtaaga 6540 gttctcaccg tgcgtattaa ccaagccgtg aaatcggaaa tcaattttcc aaactcacgg 6600 ctgggggcta ggatcagagc ttattcaacc aaggcaggtc aatggtccaa gagccttatc 6660 ctccgagaaa attcctccga cgacaaggct gggggctagg gagagtgtac gactcaaacg 6720 gctgaccaaa gtcattaact gagaacacac tcttacacac gacatctaga gtaagataca 6780 tttgtttaag gaatatttct ttattcacaa aataattctt acagttttta cataaatttt 6840 ccactacatt acatctttcc ctaagatatc tgtgacaggg catgagtact accaagaagg 6900 ccaacgctag tccatagact ggaagatctt ctcggccagc ggcgacatcg acctcgccag 6960 atggtctatc tccgccggag ttctccgaga acgagcaaaa ccatggcgga gaaactcgag 7020 gtccaagcgc gggcggtgat ctcgtaggca agccagcatg tgcactccgg cgtatcggct 7080 cactcgacga cactcttgct tcaaggcctc gtcgatatgc ttgccgatgc catcaagttg 7140 ggcacaggcc ccgtttagcc aagagatgta cccagccgcc gactcctcgg gatcatcgcg 7200 gactactcga agttccctgc atactctggc catggaggca cagcaactcc tcaagtaaga 7260 gttgaaccac acctcgcgac ctcggagcgt ctccacaacc tgctctttct tcacggccag 7320 catggttctc tcaagttccg ccacttcaaa tttcgtcttc cagtattgga tacgacgatc 7380 ttgatttgca agggcaccct cgagatctgc taaatgtgat gaccactaag acaagttgga 7440 tacctccttt acaacataaa taacctaatc aagaggtcac taagaggtga aaaggctact 7500 cacttgaggt ggccgttgcc atcccggcct tcgcatcaag agtttgatcc acattgtcag 7560 acgaaacatg tggttcaaaa tcgagtaccg gaatcatcgc cagtgactca ggctgcccgc 7620 gctgctggac atcctcatca tcaacatctc tataatggac aaaaactccc gagatcaaca 7680 tacaaaattg gacaagggtg gtaatcgcac gaacgaaggc ggccagagtt caagatttac 7740 acaatatata acaaatacaa gaagtcctac tcttcaaaaa ggggcagaac agactccccc 7800 agatcactga cttcttccat cacctcctta cgcgtgtcgc ttgccgcccc ctgatccaag 7860 atctcgcgca gatcgagttc aggacgcgac aatcttacac acgcgaggac gtgacacgct 7920 ccggtgtaga tgccgttcga cgtctcctcc gcgatcctgg ccgcatgctt ggaggggatt 7980 ttccccatcg ccgtcgccag ttccgcaaga gaggaagtca gcaaaaactc gtcgggattc 8040 gccgggatcg tggacttgac gccgcactcc tcggcgagct gatggaggcc agtgtaggtg 8100 acccgcaacg agccatggat ctcggagaga ttgttcccga gttccgacat tcagtcctcg 8160 agccccttcc gttgatgctc gttgccggcc accaactccc tcatcttcgt gaggtcctca 8220 cgggcttcag ctagctcgcg caccaatctc tcagcacgcg cattcgccgt cgccgcttcc 8280 gacctcgcct ccgagatctc gctgccgatg ccgcgagcac cagcttcgag aagacgcccc 8340 atctcgactt ggagctcctc ccaggtgaga acggccgctg gcagaccacg acccgcagcg 8400 ggattgttga tggggccact aggcgtcgcc tcccggctcc cggtcatggg cacgacatct 8460 gtcgaggccg tggcaggtga tgcgctagaa gctcccccgg acttggcccg tgcagccttc 8520 gcccgcgcct ccctacggac aaccacgaat caaacaccat ttgaacgaaa agcacgagaa 8580 tccaagaatc tatttactta cttctcgccg atcgttacaa tgcgctgtcg tcgtggaggt 8640 ggaggggacg cgtctgaagc ctgaaagaca atcaatacag agtaagaaga aaccctcctt 8700 gctgcacgat ctgacgacaa gatgataccg aggggggtcg ctgccttgcg gcaatgtccg 8760 agtacagacg agaatttcct cgccttggtc gggactttgc caccgctagt ggtggccgca 8820 tcagatgcct ccttgacaac cttctccttt agagatgtcg ccacctgatg gtccgcgagc 8880 ggcccgatga tgtcagtcaa aggaagggcc tacgcttaat caggtcataa ggtgatttcg 8940 aaaggagaat acgagatgct tatcaaatac acttacgttg atggcttcat cgcgttccgc 9000 cgcccccttt tcacaaaggg gcacggggat gtcgctagcc gtggtcggac cgctgatcat 9060 cacttgaccg acgcgccgct ccatagcttc gctgcttaga cctgttaaac ggaaaccaac 9120 ttttgataag tcaagaggaa cgcgactaca agcacgccaa gatgaatacg agaaagatac 9180 cccgaggaga aacccgggtc gcgtcatccg acccgaaata gttataggct ggatgggccc 9240 gagcctggag cggctggatc cgcctaccga cgaagtctgc agcgacttca tatcccgaca 9300 agccctgttc tcggagatca tcgatgatgt cgataaacga ctgaagagag gggctcaaag 9360 ggggcttggc ggtccaggcc ggaatcttgt ccggttgatc ctcgggaaca acgaagacag 9420 ggttcgagtc cttgatctca agatagaacc acctgttccg ccacttactg cgggaagaag 9480 gacactggaa ggggatataa cgcgacttca tgccatcacg aagtcggaac ccgacgcaac 9540 cagacaccct attggattcc atccaacgca gttcatagta gaaacggaag agatcgagaa 9600 aaggctctac cccaatgtag gcctcacaga gatgaacaaa gatactaaga aaggcgatgg 9660 aattaggatt caaatggaga agagaaagac catagaaatt caacaccagg agaagaaact 9720 cggaaggtgg aggaagaaaa ccgcagagaa cgtaatcttc gatcacaacc atgcgaccta 9780 agaggggctg aggatcagta cctcctactt ctctctccat gtctccacgg ccgggaaggg 9840 cgccgtcctc ctaaaggttc ttcaacgtcg cgctggtgga agacgactta ccgagatcca 9900 ttgttgttcc aagatcgccg gaaaacaagc ctgagttggc gaactagggt ttcttgcggc 9960 ggcggagaag gcaaggagcg ctggcaggtg gtgtgtgttc aacaaggttg gcagacttca 10020 aaatgagctc ccaaaattcc tttaaataag cacactacca acggtgcgaa ttccaaggaa 10080 cggagagaga tccccgccgg aaatctctgg gcccgttacg cgcggtagtt ttctggactt 10140 cagttcaaaa ttcactcgtg accgttgggc ttcaaacggc atgctcgact acgttctatc 10200 tccgcggtcc tcgcgccaag aatgacaacg ttctcgacac ccgaagtcat aaatggttgc 10260 acgagttcat tttaagcaga agtcgggggc tac 10293 // ID SZ-30 repbase; DNA; ORY; 6340 BP. XX AC . XX DT 01-FEB-2005 (Rel. 1, Created) DT 01-FEB-2005 (Rel. 1, Last updated, Version 1) XX DE Rice retrotransposon SZ-30. XX KW LTR retrotransposon; SZ-5; SZ-30. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-6340 RA Jiang N. and Wessler R.S.; RT "SZ-30: a retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 87-87 (2002). XX DR [1] (Consensus) XX CC SZ-30 has 1198bp LTRs. LTRs are similar to SZ-5. XX SQ Sequence 6340 BP; 2147 A; 1568 C; 904 G; 1721 T; 0 other; tgtaggatcg aacacaagca accaagccta ccagaagggg gtgaatggta gagaaaaaca 60 aaaacccaaa aacttttaac ggaaataaaa gttaccctca aatcgatgga aatcttgacg 120 tagttttatg gccgccggtc ggaccgctcg tacgccgcca gtcgaaccgc ctccctgccg 180 tctgaacccg aagaaacaca aatcgaagaa ctctcaaagt agatgaaaac tttatttctt 240 ctctctgtgt ttacaaagtg caacaacagc actccttaca aaaatctcga ctaaactcga 300 aacccgaatt aaactatcaa ctcaattgct ctcaaagcga taccgggaag gctcacgctc 360 cctctctatt tataccaaaa aaccccctac tcaaagtagg tgtaaaactc ctattcacaa 420 taggactcaa tccctcaatt tctaaacctt ttacaattta ccaaaactcc cacagccgca 480 gccaaccgca tcggactcga tctcctgcgc ttgctcctgc ttgggcctat cgcacgtggg 540 ctgacgtgcc gctgctcctg gaccggctcg gcctccagcc agctgccacc gaagcccacc 600 gagccatcac acatgcatgg cacaacatgc atgcatcaat caccatacat acatgcatat 660 gctacgacca gcatacacac atatatgcat acacgacctg ctacaataac tcgaagcact 720 gtagcaccat atacttctct ctaatttctt ccaatctcct tcgcgaacac cggcacttgc 780 acgcacacct cgtgaagccc gttgcgaaga tctctcccac acggtgtcca ttcaccatgt 840 gtcatctcgt atccaatttc gttactcggt atccttaacc gtctgaacct caactcctcc 900 atgagtttag tcccgatccc caccgttgac cgaagttgac ctccaagaat ctggactcta 960 gtcaccttct cacatggtat cccgaccgca ctagacctct gttcctccct gaacatagtc 1020 ccagtcctca ccattgacca aggctgacct caagtcacct gcacacaatc agacaaaaca 1080 accgtttctg ggcacagata tcacaaccta acccacatta gtcacacgca ctcacaccaa 1140 cattcacaca aactctcaaa ccaattcttt aattaaatca tttgcatagc caattgttca 1200 tcacaaatat taatcatgac aatgatttca caatctcccc cttgatgaac acattggcaa 1260 catcaacaaa atgcaatttt ttgtttatga aaaataaaaa caaaaatcac aaaagtgaaa 1320 agaaaaactc tccccttttt aaaagaaaga atttctctca tcaatttgca atcaaagtac 1380 aaaattgact atttttaaaa tcgaaacaat tcaattctcc ccctttcaag aagcatgcat 1440 tttgtatatt tctccccctc tgacaatgat ttcatcaaga attcaaaaga gaaataataa 1500 caataaaaca caaatgaaat tatgtcatga ttgccacttg gaataaccat ttttagtttt 1560 tatattttct caattttttc cgagagcttt gaaatgtacc aaaagcaatt catgatcatg 1620 tgttgcaata taagggagat aaattcatca gctagttaac aagcatgcac tatagtataa 1680 acatgaatca aagatattac aattaagctc aaatcaacaa taaggattca tgatttcaaa 1740 tgatttataa tgcaatatat tcacaagcac ataggttgaa aaacaaacaa tatacatata 1800 tacctattgc atttatcact ctttctcaaa ttagctttag cacaaaacaa tcaagagaat 1860 tttttaactt tcatttgagc ctttttgctc actttttttc tctcaattat ttcgggtacg 1920 tccttgtcgt caagactgtt tccaaggatt cggtattcat tttttttctc tcatagatat 1980 tttttattct cttgcacaat gagcaaataa aagctatttg aggaataaca attcaataaa 2040 gcatatacat aagcatttat aaatcaaacc atatgctagc atcaatattg catattttct 2100 taattcaagt aaaagaatta gtgtcatgca tcatctcact taaaagcaat atctaatcct 2160 catataaaga ctaaaatgca tacaagctaa catagcaaca aatagacctc aattattttg 2220 ctagcatgca caagaatata ctagaggtat aaaacaaagc tcttcttttt ctcattttta 2280 tttattttca aaattagagc aaatgcataa aaataaacat gaatgcatga aaaagcataa 2340 actccccctc aaattaacct ccaattctcc ccgaacaaaa atcaagaaga aatcaatgat 2400 tttgaaaaag acatccaatt gccaatgata tcaccaaggt tctcatgaat cgacatatat 2460 ccacatgtat taaacaaaac tactatctca aacactagca tatgaaaagc taataatcaa 2520 gagagtagaa caaaattata tcaatccaaa aattaccttg atgttacctt gtaaagcaat 2580 cgccgtcaca acattgaacg ctcatgggga gtatgccacc aaaataccta caaatgagaa 2640 gatgtcaagg cctccgtgtt ggggttagaa ataagaaatt ttggaatcca acactgagtc 2700 acacgaccag tagaaccagt aggtacatat gcactaacaa aatcagaacc agacatacct 2760 gaaaacttac cttttcgttt cacaaaagac tgatttgaat tacgcacaaa atcaccccga 2820 ggccggtctg accgccgctg tccctgcggt ctaaccgggc ctagctgccg gtctgaccgc 2880 cggttcaact gcggtctcac cgtgctcctc gaactaaaac ccgatttttg ccaacgtcgt 2940 tttgcaaaag caatttctct ttcctttttc tgtttatggg caagtctaaa acaaaaacca 3000 accaaatatc catcttttcc acaaaaagaa caagtgtact tctcacgaca agtttggtaa 3060 gtagatggtt ttgaaattga tggttttgca acaacagaag attttgcatt cacaacattt 3120 gattttgaag aagatgcatt caaagaagac atgatgccag cagatttaaa cacagtgttc 3180 ttaggctcag tttcaatcaa aatttcacct ctcctagcag cacccaaaac agtaggagga 3240 tgtctagcat gataagcata agaatcaaaa cctaaaccac gattgtgtgt gctaacttta 3300 gattgatcaa gaatcatgtt gaggttcttt ttaccatcag aaaatctttg caaagaactt 3360 ttcaaataag aaacctcttg agtaagaata gcacaatttt tgcaagcatc caaaaaacct 3420 ttttgctttc tacaagttga gcaagaaaac acctcatctt gtttaacaac ttcttccatg 3480 tgtttaacac gccctatagc atctttcaac ttcatctcat tcaaaacaca ctttgaacaa 3540 tcttgagaaa tcaaaacacc attgttttgt tttgccttat ttgcacatga agcattgacc 3600 aaagaacttg cataaaaaac aactttgtat ttttttcaaa acattctttg tcaaaatcaa 3660 ctcatcaaca acacgagcat gtaaagcaaa tccaagagca aaagaagatt ccaacttttt 3720 agatttttca atctcaaatt ccaatttttt gcaattaaca gaattgacat ctcgcaaagc 3780 attaatttca gaaaataaaa cttcacaaga ttgacaatta tcatcatcag gaatcgaaga 3840 ttttaatcta tcaatttcag catttagaat ctcaatagtg tgatccttct catcaagcac 3900 aatagaacat gtttgaagtt tcttagcaaa tttgtaagca gcaagttcta attgatcata 3960 actaagcttt tcttcattat catcgtcaga ttcatcaaca gcagaactag cattacgagc 4020 aataaaatct agatcaacaa cttgcttacc tttgccctca tcttcatctt cagatccatc 4080 aagaactttt atgagttctt gaactaacca ctgcatacaa tgcttcttct tctccttctc 4140 cttcatgttc ttcttcttgt tcacgtcatc ctctttgact cttccatcat cttcattctt 4200 tcctctccca agcttaggac aatgcgaacg aagatgatta agtgctccac actcaaaaca 4260 acgattcggt tctcctcttt tcctgttcct aacatttttc atagctcgag aaaatctgtt 4320 agatagcaaa accaaatcat cctcgaactg ttcgagttga tcatcggata tggcattaaa 4380 taaagcaaga acagaagact tcgatgaaga agcaccaaca tccaaaaaag ttgaagacga 4440 aaccaaaaca ctagacttag aatcaccttt acgagaacga atattcatct catgagtttt 4500 cagttttgtg taaagcgaat ccaaagtcaa agtagacata ttcacagact cctgaataga 4560 tgtaactttc atctcccaaa tagacatgtc aagaccattc aaaaagtggc gaaaaatctt 4620 agattgtgga taattagcat cataagaaga atcaacagat ctaagatcac tcaaaatttt 4680 attaaaccga gaaatatagt catccaaagc ttctccaggt ttcatctcaa atttaatgta 4740 ctccgttttg aaaagatcac gacgaagttc ttttatatta tttgttcctt gatgaaaatt 4800 actcaaaaaa atccaaatct catgagcagt ttgaagatga gcaacacgat cataatccga 4860 acgagaaatc ccactcaaaa gaatattgcg agctttgcaa ttttgttcaa aagcagtttt 4920 ttcagcagca gtattaatag cttcaggaat cacataagca tgagaaactt ttctctaaat 4980 atcataatct tcagccataa tgtaagattg catcctacta caccaatgag aaaaatccgt 5040 tccatcgaaa acatgaggtt tagttgaaaa cctaacagga gcagccatgg caaaaacttt 5100 agatcgataa aaatccaaag aagaaaacga ggctatgata ccacttatag gatcgaacac 5160 aagcaaccaa gcctaccaga aaggggtgaa tggtaggcaa aaccaaaaac ccaaaaactt 5220 ttaacggaaa taaaagttac cctcaaatcg atggaaatct cgacgtagtt ttatcgcccc 5280 cggtcggacc gctcgtacgc cgccagtcga accgcctccc tgccgcctga acctgaagaa 5340 acacaaatcg aagaactctc aaagtagatg aaaactttat ttcttctctc tgtgtttaca 5400 aagtgcaaca acagcactcc ttacaaaaat ctcgactaaa ctcgaaacct gaattaaact 5460 atcaactcaa ttgctctcaa agcgataccg ggaaggctca cgctccctct ctatttatac 5520 caaaaaaccc cctactcaaa gtaggtgtaa aactcctatt cacaatagga ctcaatccct 5580 caatttctaa accttttaca atttaccaaa actcccacag ccgcagccaa ccgcatcgga 5640 ctcgatctcc tgcgattgct cctgcttggg cctatcgcac gtgggctgac gtgccgctgc 5700 tcctggaccg gctcggcctc cagccagctg ccaccgaagc ccaccgagcc atcacacatg 5760 catggcacaa catgcatgca tcaatcacca tacatacatg catatgctac gaccagcata 5820 cacacatata tgcatacacg acctgctaca ataactcgaa gcactgtagc accatatact 5880 tctctctaat ttcttccaat ctccttcgcg aacaccggca cttgcacgca cagctcgtga 5940 agcccgttgc gaagatctct ccaacttcgt cacctggtat ccttgactgt ctgaacctca 6000 actcctccat gagtttagtc ccgatcccca ccgttggccg aagttgacct ccaagaatct 6060 ggactctagt caccttctca catggtatcc cgaccgcact agacctctgt tcctccctga 6120 acatagtccc ggtcctcacc attgaccaag gctgacctca agtcacctgc acacaatcag 6180 acaaaacaac cgtttctggg cacagatatc acaacctaac ccacattagt cacacgcact 6240 cacaccaata ttcacacaaa ctctcaaacc aattctttaa ttaaatcatt tgcatagcca 6300 attgttcatc acaaatatta atcatgacaa tgatttcaca 6340 // ID OSTE24 repbase; DNA; ORY; 683 BP. XX AC . XX DT 08-NOV-2002 (Rel. 10.03, Created) DT 21-APR-2005 (Rel. 10.03, Last updated, Version 1) XX DE Rice putative non-autonomous DNA transposon OSTE24 - a consensus. XX KW DNA transposon; Transposable Element; non-autonomous; TNR3; KW OSTE24. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-680 RA Jurka J. and Drazkiewicz A.; RT "OSTE24: a putative non-autonomous DNA transposon from Oryza RT sativa."; RL Repbase Reports 2:(10) p. 19 (2002). XX RN [2] RP 1-680 RA Jurka J. and Drazkiewicz A.; RT "OSTE24: a putative non-autonomous DNA transposon from Oryza RT sativa."; RL Direct Submission to Repbase Update (05-NOV-2002). XX RN [3] RP 1-683 RA Gentles A. and Jurka J.; RT "OSTE24 transposon, improved consensus sequence."; RL Direct Submission to Repbase Update (05-APR-2005). XX DR [3] (Consensus) XX CC Imperfect palindromic sequence. CC OSTE24 is homologous to TNR3 over part of its internal sequence. XX SQ Sequence 683 BP; 247 A; 96 C; 91 G; 249 T; 0 other; gaattttttt tatttataca tttttttatt aaaatattta caaaaataat tttttgtttc 60 gaaaatttac aaatctaatt gcctgccgcc cttaagaagg gcgattttta aaaatcgccc 120 tctcaaaggg cggcaaggga cctaaataca aaatttttat ttgtgttcaa acccttccca 180 ccggttttaa ttgcttaaaa actaataatg cttattcgat actccaaatg attttaaatg 240 gaaaagtgat aaactacaaa gttatagatc tcatcaagat ctacaacttt atataaagtt 300 tatctccatc caatgtcgtt tgaaatgtag atctgagatt ttttaaaatg tgttttatat 360 tttgtaacga atatttggat atctaaaaca tcttaaatga aaaagttatt aactacaaag 420 ttgtagatct ccttgagctc tacaattttg atataaagtt ttatttcatc tgactttata 480 taatataatt ttaaattgta aaattataga gctaacaagt tatgctggaa aatttacatt 540 taggtccctt gccgccctgt ggaagggcga tttttaaaaa tcgccctccc aaagggcggc 600 aggcgattag atttgtaaat tttcgaaaca acaaattatt tttgtaaata ttttaataaa 660 aaaaagtata aataaaaaaa att 683 // ID SZ-7IN repbase; DNA; ORY; 10293 BP. XX AC . XX DT 08-JUL-2004 (Rel. 9.06, Created) DT 08-JUL-2004 (Rel. 9.06, Last updated, Version 2) XX DE Rice gypsy-type retrotransposon SZ-7. XX KW Gypsy; LTR Retrotransposon; Transposable Element; KW GYPSY superfamily; SZ-7IN; internal region. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-10293 RA Jiang N. and Wessler R.S.; RT "SZ-7IN: a gypsy-type retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 122-122 (2002). XX DR [1] (Consensus) XX SQ Sequence 10293 BP; 2872 A; 2865 C; 2490 G; 2066 T; 0 other; gtggcgcgcc aggtaggggg atttggtact caaggttcta ctactatgtc atccagcttc 60 gtcgacaaca acgtcaacac cagcctcagc caagcgctcc ctgcttcaac aatgctggta 120 tggactcaag tcggcgaaat cgtcttcccg ttttacacca cgacgctgat ctcaaccggt 180 cctccaatga ccggaaacga gaacgcagtg gctacaaacc aaggcgactt catgtcgaaa 240 aatccacctg tcgaaacgga gaacggatca tcgacgacat ccaagctcgg gaaggattct 300 gatacggcca aaccttgccc ttctgacatg aaccacgagc cggcaaagat gacttccgaa 360 gccacaaggt cttggtgtcc tatccacaaa accaagaaac acaccctgca agattgctgg 420 gttttcctca acgtccatgc tgaaattcgc gcatgcaaag aacgtggaat tcagcgtact 480 tctccaactc gggatgtcta ttgtcctatt cacaagacaa agaatcacaa cctctcgagc 540 tacaaagtct tcctcggcgc catgaaagct ccgtctcctg agtcatacgt ccccgtcagg 600 gataacggca aggaacaagg agcgactcca gcctcagatc gattcgttga ggtaatcgat 660 atcgatcctc atgaaccacc ggtcttacat cttctcgaag actatgggtc atcgacaatg 720 agcgtgccgc aggaggtatt ggctatcgat gacgttggca cgtcaacgca agccaacgca 780 gaagcggcga atcaatcgac tactccagcc caacacatca gggccgttca agccttacta 840 agggaaactc cttacgatcc cgttctgaat gatgacctcg agcgttgaca gaacgactac 900 gggaatcggt gaccaacctt agcaacgcgt ttgaagaagt cgctaccgca gcgcaccaag 960 atcagccgcc aactagcgac gccaatggtg aagatccgga acggagggaa tcacctcaac 1020 gagccactcc tccacctcgc ggcgctggcg atctccgaga tcaaatcaac ggccgccgag 1080 aagcacgacg cacacgagac aatgtaaatc gctctcggcg tcatgtctct tcacggcgcc 1140 atgataacgg aaatcgagga gaccgctcaa acgaggaccg ggatcacgac aaccaccgca 1200 atcgcaacga tcgcgaatga cgggggccag acaatactgg tcatggccgc cgccgtaacg 1260 acgacaataa tggagatcgg cgccgagaca acagcgagag acaacgatag gattcccgag 1320 atccaggccg tcatactcgt aatcgtacgc cggaaccaag tgacccatcg tcatcatcat 1380 catctgcgtc ctcctcatcg tcagacagac atccacgaag gacacacgac cgctgacaac 1440 ccaccgcccc caacgctggg tgcagggctt tcggtcgttc cctacgtgat gtccgatggc 1500 ctgagagatt ccgacccgga gcaattgaaa agtatgatgg gagcaccaac ccagaagaat 1560 tccttcaagt ctactccaca gtactctatg ctgccggagc agacgacaac gcgctagcga 1620 actatttatc aaccgcgttg aagggttctg cacgttcatg gctgatgcat cttcctccct 1680 actcaatctc ttcgtgggca gacctgtggc aacaattcgt tgccaatttc caaggaacgt 1740 acaagcgcca cgcgatcgaa gacaacctac acgcgttgac acagaactca ggtgaatcat 1800 tgagggaata tgttcgacgc ttcaacgaat gcagaaacac aattcctgaa atcaccgacg 1860 cttctgtaat ccgcgccttc aaatccggtg tcagagatcg ctacactacc caggaattgg 1920 cgacaagacg catcacaacc actcggaggt tattcgagat cgttgagcga tgtgcccatg 1980 tggacgatgc gctaagacgc aagaacgaca agccgaagac cgggggagag aagaaatcag 2040 ccacagacgc atctgagtca agcaagaaga aaaatcgcaa aaatgggaaa aggaaagctc 2100 aagcggaagt cctcgcagca gaatacgcga accctcccaa gcgcccagac ccacaaggca 2160 gcgacacaaa gaaatcttgg tgccccatac acaagacgga cagacattct ctggaagatt 2220 gccttgtttt caaaaagtcg ctcgagaagc acatggcgtt tgaaaaaggc aagcgagtac 2280 gcattgtcga gaagaacgaa gagacggctc ctcacgaatc ggattatgcg tatccagact 2340 ccgacctcca catctcacac attttcggcg gctccacaac gtactcctcc aagtgagaat 2400 acaagaaagt ggaacgtgaa gtctgttcga catggcgggg ggctgcaccc aagatgaagt 2460 ggtctaagca gaaaatagag ttctcgaaag aagaccaccc caagaccgcc gttatcccag 2520 gacgatatcc gatcgtggtc gaacccatta ttcggaacat caaagtagcg cgagttctca 2580 tcgacggtgg cagctcgatc aatcttcttt tcgctagtac tctagacgca atgggaattc 2640 cgcaaagtga gttgacacca actgatcaac ccttccatgg aattactccc caatcatcat 2700 ccagaccttt tggcaagatt acgttgcctg tgactttcgg ccaagccaac aacttccgaa 2760 cagagcagat caccttcgat gtcgttgaat ttgatacagc ttacaacgcc atcatcggga 2820 gaactgcact tgcgaagttc atggccatat ctcactacgc gtatcaagtg ctcaagatgc 2880 cgggaccgaa gggaacaatc actattcagg ggaacacaaa gctggcagtg cagtgcgaca 2940 agcggagcct cgacatagtc gagcaaacgc ccagcccacc cgccacaact gagccaccca 3000 agaaagtgag caagacaaat aagacgccga agccggacgg cgccatcaag atcgttccac 3060 tctccagtgc caatcccgac aagactgtca agatcggggc gacactaaac gagaaatagg 3120 aactcgcgct catcaccttc ctccgcgata atgcctgcat gttcgtttgg caaccgtccg 3180 acatgccggg ggtccctagg gaggtgattg agcacaaact aatggtgcga cccgatgcca 3240 agtcagtaaa gcaaagactg cggagatttg caccagaccg gaaacaagcc atacgagaag 3300 agctcgacaa acttctcaaa gctggcttca tcagagaagt acttcatcca gagtggctag 3360 ccaatccagt catggtgcgg aaggccaatg gaaaatggag aatgtgtgtc gacttcaccg 3420 acctcaacaa ggcgtgtccc aaggatcact ttcctctccc tcgaatagat caattggtgg 3480 attcaacagc cggttgcaag ctattgagct tcctcgacgc ttactttggc taccaccaaa 3540 tcagcatggc aatagaggac gaagagaaga cagcattcat catgccgttc ggggtatttt 3600 gctatgttaa gatgccgttc ggactgataa ccgtcgggaa tactttccag cgcacggtcc 3660 agggcgcact tagcaaccag cttggcaaca atgttgaggc ttacgttgac aacatcgttg 3720 tcaaaaccaa gacaagcgac tcattgattg acgatctgcg ggaaatgttc gacaacctcc 3780 gacgatatcg cctcatgctc aatcctgaga agtgcacgtt cggagtaccg tcgggcaagc 3840 tactcggatt ccttgtctct ggcagaggaa tagaggcaaa tcccgagaag atcaaagcaa 3900 tcgagaacat gaagtcgccc acgagactca aggaggtaca aaagctaact ggatgcatgg 3960 aagcactaag cagattcgtc gctaggatgg gagaacgagc acaaccttcg ctctattgaa 4020 gaaacaagac aaatttatat ggacacagaa agccaaagag gcatttattg cactcaagcg 4080 ctacctatca aacccccctg tacttgttgc tccccaacct aatgaagaat tattcctcta 4140 tattgccgcc acgccatatt ccgttagcac tgtcattgtt gtcgagagag agaaagtaca 4200 gcgaccagtt tattacatca gcgaagctct ccatgacgca aagacaagat acccacatat 4260 ccaaaaaatg ctttacgcag tcatcatgac atcaaggaag ctgcgccact actttcaagc 4320 tcacagagtc acagttgtat cctccttccc ccttggagaa gttgtgagaa acaaagacgt 4380 tgtcggccgc attgcgaaat gggtagtcga gctaagccaa tttgatgtcc actttctgcc 4440 gcgaatagcc atcaaatccc aggtactcgc cgacttcgtt gccgattgga ctatgccgga 4500 caacaaatca gacaaccaag gcgacaacga aacatggaca atggcgttcg atggcgcact 4560 caacagccaa ggagcagggg caggatttat cttgacgtct ccttccggag atcaattcaa 4620 gcacgcaatc cacctcaact tcagggcgac caataacact gcagaatacg aaggactact 4680 cgccaggata cgagctgcag ccgcacttgg cgccaagcga ctaatcgtca aaggggactc 4740 cgagctagtc gcgaaccagg tgcacaaaga ctataaatgc tctaaccccg agttatccaa 4800 gtatctcgta gaagtcagga agctagagaa gaggttcgat gggatcgagg tccgacacgt 4860 ctatcgcaag gacaacgtcg agccagacga gaaccactcg aacccggcac ctttctcgat 4920 atcctgacga agccatcggt gaaagaagtt agcggcgaag ttagcccgaa cacccccgac 4980 atcagctcgg aggtcaccga ggcagaacgc gccgttgctg acatcgaaac cacagacgac 5040 tggcgcatcc cattaatcaa attcatcagc agcgaggagt tgcccgagga cgatacagag 5100 gccgagaaaa taacccgtaa agcaaagatc tactgtatgg tcggtaacga tttatacaaa 5160 aaagcgctaa acggggtact tctcaaatgc gtctctactg acgacgacag acacctcctc 5220 ctcgacatac atgaaggcat atgtgggtca cacgccgccg gtcggacatt ggtcggcaaa 5280 gcttttcgac aagtcttttt ctggccaacc gcccttaaag atgcattcga catggtccag 5340 cgatgtgaag cctgtcaatt ccacagtaaa cacacaaagc tacccgcgca agcgctccag 5400 actatccctc tgacttggcc gttctcgtgc tgggggctag atatacttgg gccattccca 5460 cgaggacagg gcggctacag attcctattc gtggcgatcg acaaattcac caaatggata 5520 gaagcagtgc ccacggggga aatcaaggcc gacaacgcca tcaaattcat cagagggata 5580 ttctgcagat acggactact gcaccgcatc ataaccgaca acggctccca attcatcagc 5640 accgacttcc aagattactg catcgggttg ggagtcaaaa tatgtttcgc ctcggtctct 5700 caccctcaaa gcaacgaata agtcgaaagg gcaaacgaca tagtactaca agggatgaaa 5760 acccgcgtct acgacaggct catgtcacaa gacaaaaagt gggttgaaga actcccatca 5820 gtactatggg ccgtacgcac cacaccgaca acgtccaata aggaaacacc cttcttcctc 5880 gtgtacggct ccgaggccat gctccccggc gagctacgac atcagagtac acgagtacag 5940 aagtattcca acgagaacca ggaggaacag tgagacatcg atgtaaatct tctcgaggag 6000 catcatgagc gagttgccgt ccgagcagcc agctatcaac agtccctccg ccgttatcac 6060 gagaagcgca tccgagcacg catactttcg atcggcgact atgtcctccg acgagttcaa 6120 acccaagcag ggcaaaacaa actctcacca aaatgggaag gaccttacac aatcacacaa 6180 gtcttgcggc caggcgcatt caaaatcgca gacggtgatg gtcgcgaatt agcaaattct 6240 tggaacattg accaactacg taaattctat gtatgagtca ataccactgt acctgtaagt 6300 acccttatag tatcaataaa gcctatttct aggtcccata tcacaatcaa agtgttttca 6360 cccgatgatc ccttactctg atgacaccta gcgttgaaac ctgtccttat gtccctttac 6420 gccgtctcga caaggcctcc gaggaaccta agggatcttc ggctggggat gcccagagcc 6480 gataaggcct tgtcagatcc tgtagagaca aaagaccatg taagatctgg tcgtgtaaga 6540 gttctcaccg tgcgtattaa ccaagccgtg aaatcggaaa tcaattttcc aaactcacgg 6600 ctgggggcta ggatcagagc ttattcaacc aaggcaggtc aatggtccaa gagccttatc 6660 ctccgagaaa attcctccga cgacaaggct gggggctagg gagagtgtac gactcaaacg 6720 gctgaccaaa gtcattaact gagaacacac tcttacacac gacatctaga gtaagataca 6780 tttgtttaag gaatatttct ttattcacaa aataattctt acagttttta cataaatttt 6840 ccactacatt acatctttcc ctaagatatc tgtgacaggg catgagtact accaagaagg 6900 ccaacgctag tccatagact ggaagatctt ctcggccagc ggcgacatcg acctcgccag 6960 atggtctatc tccgccggag ttctccgaga acgagcaaaa ccatggcgga gaaactcgag 7020 gtccaagcgc gggcggtgat ctcgtaggca agccagcatg tgcactccgg cgtatcggct 7080 cactcgacga cactcttgct tcaaggcctc gtcgatatgc ttgccgatgc catcaagttg 7140 ggcacaggcc ccgtttagcc aagagatgta cccagccgcc gactcctcgg gatcatcgcg 7200 gactactcga agttccctgc atactctggc catggaggca cagcaactcc tcaagtaaga 7260 gttgaaccac acctcgcgac ctcggagcgt ctccacaacc tgctctttct tcacggccag 7320 catggttctc tcaagttccg ccacttcaaa tttcgtcttc cagtattgga tacgacgatc 7380 ttgatttgca agggcaccct cgagatctgc taaatgtgat gaccactaag acaagttgga 7440 tacctccttt acaacataaa taacctaatc aagaggtcac taagaggtga aaaggctact 7500 cacttgaggt ggccgttgcc atcccggcct tcgcatcaag agtttgatcc acattgtcag 7560 acgaaacatg tggttcaaaa tcgagtaccg gaatcatcgc cagtgactca ggctgcccgc 7620 gctgctggac atcctcatca tcaacatctc tataatggac aaaaactccc gagatcaaca 7680 tacaaaattg gacaagggtg gtaatcgcac gaacgaaggc ggccagagtt caagatttac 7740 acaatatata acaaatacaa gaagtcctac tcttcaaaaa ggggcagaac agactccccc 7800 agatcactga cttcttccat cacctcctta cgcgtgtcgc ttgccgcccc ctgatccaag 7860 atctcgcgca gatcgagttc aggacgcgac aatcttacac acgcgaggac gtgacacgct 7920 ccggtgtaga tgccgttcga cgtctcctcc gcgatcctgg ccgcatgctt ggaggggatt 7980 ttccccatcg ccgtcgccag ttccgcaaga gaggaagtca gcaaaaactc gtcgggattc 8040 gccgggatcg tggacttgac gccgcactcc tcggcgagct gatggaggcc agtgtaggtg 8100 acccgcaacg agccatggat ctcggagaga ttgttcccga gttccgacat tcagtcctcg 8160 agccccttcc gttgatgctc gttgccggcc accaactccc tcatcttcgt gaggtcctca 8220 cgggcttcag ctagctcgcg caccaatctc tcagcacgcg cattcgccgt cgccgcttcc 8280 gacctcgcct ccgagatctc gctgccgatg ccgcgagcac cagcttcgag aagacgcccc 8340 atctcgactt ggagctcctc ccaggtgaga acggccgctg gcagaccacg acccgcagcg 8400 ggattgttga tggggccact aggcgtcgcc tcccggctcc cggtcatggg cacgacatct 8460 gtcgaggccg tggcaggtga tgcgctagaa gctcccccgg acttggcccg tgcagccttc 8520 gcccgcgcct ccctacggac aaccacgaat caaacaccat ttgaacgaaa agcacgagaa 8580 tccaagaatc tatttactta cttctcgccg atcgttacaa tgcgctgtcg tcgtggaggt 8640 ggaggggacg cgtctgaagc ctgaaagaca atcaatacag agtaagaaga aaccctcctt 8700 gctgcacgat ctgacgacaa gatgataccg aggggggtcg ctgccttgcg gcaatgtccg 8760 agtacagacg agaatttcct cgccttggtc gggactttgc caccgctagt ggtggccgca 8820 tcagatgcct ccttgacaac cttctccttt agagatgtcg ccacctgatg gtccgcgagc 8880 ggcccgatga tgtcagtcaa aggaagggcc tacgcttaat caggtcataa ggtgatttcg 8940 aaaggagaat acgagatgct tatcaaatac acttacgttg atggcttcat cgcgttccgc 9000 cgcccccttt tcacaaaggg gcacggggat gtcgctagcc gtggtcggac cgctgatcat 9060 cacttgaccg acgcgccgct ccatagcttc gctgcttaga cctgttaaac ggaaaccaac 9120 ttttgataag tcaagaggaa cgcgactaca agcacgccaa gatgaatacg agaaagatac 9180 cccgaggaga aacccgggtc gcgtcatccg acccgaaata gttataggct ggatgggccc 9240 gagcctggag cggctggatc cgcctaccga cgaagtctgc agcgacttca tatcccgaca 9300 agccctgttc tcggagatca tcgatgatgt cgataaacga ctgaagagag gggctcaaag 9360 ggggcttggc ggtccaggcc ggaatcttgt ccggttgatc ctcgggaaca acgaagacag 9420 ggttcgagtc cttgatctca agatagaacc acctgttccg ccacttactg cgggaagaag 9480 gacactggaa ggggatataa cgcgacttca tgccatcacg aagtcggaac ccgacgcaac 9540 cagacaccct attggattcc atccaacgca gttcatagta gaaacggaag agatcgagaa 9600 aaggctctac cccaatgtag gcctcacaga gatgaacaaa gatactaaga aaggcgatgg 9660 aattaggatt caaatggaga agagaaagac catagaaatt caacaccagg agaagaaact 9720 cggaaggtgg aggaagaaaa ccgcagagaa cgtaatcttc gatcacaacc atgcgaccta 9780 agaggggctg aggatcagta cctcctactt ctctctccat gtctccacgg ccgggaaggg 9840 cgccgtcctc ctaaaggttc ttcaacgtcg cgctggtgga agacgactta ccgagatcca 9900 ttgttgttcc aagatcgccg gaaaacaagc ctgagttggc gaactagggt ttcttgcggc 9960 ggcggagaag gcaaggagcg ctggcaggtg gtgtgtgttc aacaaggttg gcagacttca 10020 aaatgagctc ccaaaattcc tttaaataag cacactacca acggtgcgaa ttccaaggaa 10080 cggagagaga tccccgccgg aaatctctgg gcccgttacg cgcggtagtt ttctggactt 10140 cagttcaaaa ttcactcgtg accgttgggc ttcaaacggc atgctcgact acgttctatc 10200 tccgcggtcc tcgcgccaag aatgacaacg ttctcgacac ccgaagtcat aaatggttgc 10260 acgagttcat tttaagcaga agtcgggggc tac 10293 // ID SC-7 repbase; DNA; ORY; 4430 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 04-AUG-2002 (Rel. 7.07, Last updated, Version 1) XX DE Rice copia-type retrotransposon SC-7. XX KW Copia; LTR Retrotransposon; Transposable Element; KW COPIA superfamily; SC-5; SC-7. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-4430 RA Jiang N. and Wessler R.S.; RT "SC-7: a copia-type retrotransposon from Oryza sativa."; RL Repbase Reports 2(7), 39-39 (2002). XX DR [1] (Consensus) XX CC SC-7 is a Copia-type retrotransposon. It has 117bp LTRs. CC Internal region is related to SC-5. XX SQ Sequence 4430 BP; 1332 A; 713 C; 1170 G; 1215 T; 0 other; tgttgagtgt aggcgtgtgt atttcagccc aatagggccc attccaccaa tgtatatgta 60 tagtagatga gaaagaaaat gaagtgaagc ttctagagga aaaatcacaa aactacatgg 120 tatcagagct gggtcaccgg cgacctcgcc gacgcgaacc ctagtcggcg gcggcgctgt 180 gaccagaggg gttctgcggc gacgtcgacg gctgaggcgg agcggcgacg tcggacagcg 240 gaggtggagc ggcagtgtcg acggcggagg cggcgacggc tgctgcagag gttctcgacg 300 cgagcagcgt gaaggaggag cagggcgcac gctcgctggt tgagctgcgc aaggatttgg 360 tgcagcacaa gctgtaggga gcacagcggc tgagagacgc gcagctattg gctgtaggat 420 caacagagaa ggatttggtg ctattggcta ttgttgtccg ttccagtggt ggtgactttg 480 gtggtgctgt tgctggtgct gctgctactt gagaaggtga ggatttggag gtgaagcgga 540 agcttggttt gctgttgctg ttgttctgat ttggggaaga aactgagtac gagagcttgg 600 cttgctgctg ctgttgtgct gatttggggg aaactgaaaa gtagtgctgc tgggaggaag 660 tagtgctact gctgctgttc tgtttttggt gagaaactga ggagtagtgt tgttactcct 720 attaattgat ttggctagta tcctagaaga tttggttgat ctgccatggg ggaaattcaa 780 ggaattgagc aaatacttga gaaattggct gaagaagttg aagaaataag gggaagaatt 840 cagaaagtga aggagaaaac aacagtgctt ggcaactttg ttaatctcgc acatcctatg 900 caggtaccta actcaacttg gatattagac cccggagcat ctagacatgt tacaggaatg 960 tcgagtgagt ttacatcata tactccattt cagtcatcat ttaaagaaac aattcaaact 1020 gccgacggaa ctttacgaca tgtgagggga gtgggaacag tcaaatgtac tccatcaatt 1080 acattgtcgt caattttata tgctccctct tttcctgtta acctagtatc cgtaagctcg 1140 ttggttgatc atatggattg tcgaattact attgaccgag agaattgtct aattgaggag 1200 agaagaactg gaagaaagct tggaaccggc gttaggcata atgggttgtg gtatctggat 1260 agaagaggga cggacaaagc actatgtagt gctttgttag ctagcacaag tgaagaggag 1320 gctaaattga ttctaaaaca ttgtcaattg ggacatatgt cctttgatac tatgtctaag 1380 gtatttcctg atgagatgag taaggtggac aaaagcaaat taatgtgtga tgcatgcgag 1440 tatggaaaac atacacgaac cacatacata agcagaggac ttcgaagcat tttgccattt 1500 gtgttggttc actctgatgt atggacttct cctattgctt cggtaagtgg agcaaagtac 1560 tttgtcacct ttattgattg ccactcacga atgacttgga tatatctcat gagacacaag 1620 agtgaagtat tgaaatgttt caagaatttc tatgcttggg ttaggaatca attaaacact 1680 tgtgttaaag ttattaggag cgataatggg ggagaatatg tgaatgatga atttaggagt 1740 tttctctcag cagaaggaat agtacatcaa acttcttgtg ctgacacacc tccacagaac 1800 ggagtagctg agaggaaaaa tcgacatatt ctggaggtaa ctcgttcact catgtatacg 1860 atgaatgtac caaagtttct atggagtgag gcagtcatga cagcaacata tctcatcaat 1920 cgcatgccat cacgaatact tgggatgaag actccatatg aaatggtgtt tgggaaaaat 1980 gaattcattg ttcctccaaa agtgtttggg tgtacttgtt ttgtcagaga tcatagacca 2040 tccgttggaa aattggatcc tcgagccgtc aagtgtattt ttataggtta ctcttctggg 2100 caaaagggat ataaatgttg gagtccatct gagcggcgaa cttttgttag tatggatgtt 2160 acttttagag agtctgttcc gttctatgga gaaagaacag atttgagttc cttgtttgtt 2220 aatcttgaca atccaattat tgatgaggat ggacaagagg gggagaatgg ctcatcaggt 2280 actgaagaag acacacaatc aagaagcatg aaatttgtgg ttggctcaat cccatatcct 2340 gttagtgaac ccattcatga gaaaaattgg agaaggccac gtgaagaaga aaatctacaa 2400 gtttatacta ggaggaaaac aaggtctttg gaggcgcaaa caatggggca acatgagtct 2460 cctatggatg ggatggagca gcaacaatct tcaattgttg ctgaagtagg tgataaacca 2520 tctgatcagt gtgatactat acagatttca tcggatacgg aaggagagga gtttgaaaca 2580 gggggagaag aaactaatct tcctattgct ataagaaagg gggtaagaag caatgcaggt 2640 aaacctccac aaaggtatgg ttttgaagct caaggtgtga atgatgatga gaataacata 2700 gccaattatg tctcttatgc ttctttgtca tccacatata aggcctttgt gacatcacta 2760 aattcagtgg aaattccaaa tgattggagg gaagcaaagc aagacccaag gtggcatcaa 2820 gctatgctag aggagctaga ggctcttgaa aagaacaaaa catgggacct tgtaccattc 2880 cctaaaggga agaaagtggt taactgtaaa tgggtttata cagtaaagca aaatcctgat 2940 ggaaatgtgg aaagatacaa ggcaaggctt gtggctaagg gatatagtca aacatatgga 3000 attgattatg atgaaacttt tgcaccagta gcaaagatga gcacggtaag aactcttatc 3060 tcttgtgcag ctaattttga ttggccattg catcagttag atgtcaagaa tgcattctta 3120 catggagatc ttcaaaagga ggtgtatatg gaaattccac ctggatttgc tacctcacaa 3180 actgaaggta aagtgttgag actgaaaaaa tctttatatg gccttaaaca atcaccaaga 3240 gcatggtttg atcgctttag acgtgcaatg tgtggtatgg gttataaaca gtgcaatgga 3300 gaccacacag ttttctatcg ccataataga ggtcttaaaa ctattcttgt tgtgtatgtt 3360 gatgacatga ttatcactgg agatgattgc ttggagatat ctaggttgaa acaaaatcta 3420 agcaaggagt ttgaggtcaa ggatctgggc caattaaaat attttttggg tattgaaatt 3480 gcaagatctc ctagaggaat agttctttca cagcgaaagt atgtattgga tctgctcagt 3540 gatacaggta tgcttggatg tcggccagct tctacaccaa ttgaacaaaa tcataagtta 3600 tgtgctgaat ctggagatcc agttaataaa gagagatatc aaagacttgt gggaaggttg 3660 atatatttgt cacacaagac ctgatataac ttatgctgtg agtgtggtga gccgatacat 3720 gcatgatcct agaagtggtc acatggatgt tgtgtataga attttgagat atttgaaggc 3780 aagcccaggt aaaggcatat ggttcaagaa gaatggacac ctagatgtgg agggatattg 3840 tgatgcagat tggggcagtt gtcttgatga taggaggtca acatcaggct actgtgtatt 3900 tattggtggc aatctggtat cttggaggag caagaaacaa tcagttgtgt ctcgctcgac 3960 tgctgaggcg gaatacaggt caatgtcaat gagcttgagt gaattgttat ggttgaaaaa 4020 tcttttggct gaattgaagc tgtcgacaag cacttccatg aagttgtggt gtgacaacaa 4080 atcagccata aatattgcta acaatccagt ccagcatgat cgaacgaagc atgtggaaat 4140 agatcgcttc tttattaaag agagaatgga tgagggaacc ttaaacttag gctttgtaaa 4200 ctctggtgaa caagtagctg atagtttaac gaaggcatta ggtgctagag agtgcacttc 4260 ttcgtgtagc aagatgggca tgatagatat ttatcgccca tcttgagggg gagtgttgag 4320 tgtaggcgtg tgtatttcag cccaataggg cccattccac caatgtatat gtatagtaga 4380 tgagaaagga aatggagtga agcttctaga ggaaaaatca caaaactaca 4430 // ID CLOUD-2 repbase; DNA; ORY; 711 BP. XX AC . XX DT 04-AUG-2002 (Rel. 7.07, Created) DT 04-AUG-2002 (Rel. 7.07, Last updated, Version 1) XX DE Rice Mutator-like non-autonomous DNA transposon CLOUD-2. XX KW DNA transposon; Transposable Element; Nonautonomous; CLOUD-2; KW Mutator-like; non-autonomous; target site duplication. XX OS Oryza sativa OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; OC BEP clade; Ehrhartoideae; Oryzeae; Oryza. XX RN [1] RP 1-711 RA Jiang N. and Wessler R.S.; RT "CLOUD-2: a Mutator-like non-autonomous DNA transposon from Oryza RT sativa."; RL Repbase Reports 2(7), 9-9 (2002). XX DR [1] (Consensus) XX CC 9bp target site duplications. XX SQ Sequence 711 BP; 249 A; 103 C; 87 G; 272 T; 0 other; gagtaaattg cgcccacggt ataacaactt ggcagatggg tgcgatatag tgcaagaact 60 ttagaattga acgtccaagt gtaacaattt gacaagtggg tgcattctag tacaagaact 120 taataattta gtattttggt aaatcaattt ggataagcat atgctaggtg agttttttca 180 ctatgtcaat atgccaaaac acaataatcc tacaaatatt accttttttt agttgataca 240 aatattacct tataatattg aatttaatct ttaagaatta tattgcacat acaatttata 300 tccaattacc tttaagaatt ttttgttttc ttcaccttct caaatatcaa ccgaaatata 360 ataatttcta tattcagttt aattgacttt cagttattag ttattaggaa aaaatataaa 420 tatgtttata caaatccacg ctagtatatt gtcaaaataa gtacttaaaa atttgaattt 480 atataaaaaa tgcttgaaat taagttgtca aaattataat ttattttact cttttttgta 540 ttaaaatctt acctacctta aaagttattg catttatacg accacttata aagtccttat 600 actaaattgt actttcctgc taagttgttg tactagaacg cttatttttc aagttattat 660 actaaattac acccacctac taaattgttg taccgtgggt gtaatttact c 711 //