############################################################### # # # phredpar.dat - phred parameter file: 020425 # # # # known chemistries: primer, terminator, unknown # # known dyes : rhodamine, d-rhodamine, big-dye # # energy-transfer, bodipy, unknown # # known machines : ABI_373_377, MolDyn_MegaBACE, # # ABI_3700, LI-COR_4000, # # Beckman_CEQ_2000, ABI_3100 # # # # Notes: # # (1) enclose the `dye primer' name in double quotes # # and include spaces in the names. # # (2) leave one or more spaces between the `dye primer' # # and chemistry names, between the chemistry and # # dye names, and between the dye and machine names. # # (3) add entries between the `begin chem_list' and # # `end chem_list' lines. # # (4) `dye primer' string `__phred_default__' # # identifies the chemistry, dye, and machine used # # when the chromatogram dye primer string is # # missing from either the chromatogram or this file # # and phred is run with the -process_nomatch # # option. # # # ############################################################### # begin chem_list "DP6%25Ac{-21M13}" primer rhodamine ABI_373_377 "DP6%Ac{-21M13}" primer rhodamine ABI_373_377 "DP6%25Ac{M13Rev}" primer rhodamine ABI_373_377 "DP6%Ac{M13Rev}" primer rhodamine ABI_373_377 "DyePrimer{-21m13}" primer rhodamine ABI_373_377 "DyePrimer{KS}" primer rhodamine ABI_373_377 "DyePrimer{M13RP1}" primer rhodamine ABI_373_377 "DyePrimer{SK}" primer rhodamine ABI_373_377 "DyePrimer{SP6}" primer rhodamine ABI_373_377 "DyePrimer{T3}" primer rhodamine ABI_373_377 "DyePrimer{T7}" primer rhodamine ABI_373_377 "DyePrimer{-21M13LR}" primer rhodamine ABI_373_377 "DP5%LR{HS}" primer rhodamine ABI_373_377 "DP4%25Ac{-21M13}" primer rhodamine ABI_373_377 "DP4%Ac{-21M13}" primer rhodamine ABI_373_377 "DP4%25Acv2{M13Rev}" primer rhodamine ABI_373_377 "DP4%Acv2{M13Rev}" primer rhodamine ABI_373_377 "DP4%Ac{KS}" primer rhodamine ABI_373_377 "DP4%Ac{M13Rev}" primer rhodamine ABI_373_377 "DP4%Ac{SK}" primer rhodamine ABI_373_377 "DP4%Ac{SP6}" primer rhodamine ABI_373_377 "DP4%Ac{T3}" primer rhodamine ABI_373_377 "DP4%Ac{T7}" primer rhodamine ABI_373_377 "DyePrimer48cm{-21M13}" primer rhodamine ABI_373_377 "DP5%CEHV(KS)" primer rhodamine ABI_373_377 "DP5%CEHV(SK)" primer rhodamine ABI_373_377 "DP5%LR(KS)" primer rhodamine ABI_373_377 "DP5%LR(SK)" primer rhodamine ABI_373_377 "DP6%Ac{SP6}" primer rhodamine ABI_373_377 "DyePrimer{RP1LR}" primer rhodamine ABI_373_377 "P+DyePrimer{-21m13}" primer rhodamine ABI_373_377 "mob.REGA+ET" primer energy-transfer ABI_373_377 "DP4%Ac{ETPrimer}" primer energy-transfer ABI_373_377 "DyePrimer48cm{RP1}" primer energy-transfer ABI_373_377 "ET{-28m13rev}960221" primer energy-transfer ABI_373_377 "ET{-28m13rev}" primer energy-transfer ABI_373_377 "ET{-40m13}" primer energy-transfer ABI_373_377 "ET{-40m13F}" primer energy-transfer ABI_373_377 "ET{-40m13}960208" primer energy-transfer ABI_373_377 "ET{-40m13}longreader" primer energy-transfer ABI_373_377 "ET{-21m13fwd}longreader" primer energy-transfer ABI_373_377 "ET{-21m13fwd}960909" primer energy-transfer ABI_373_377 "ET{-21m13fwd}" primer energy-transfer ABI_373_377 "ET{-21m13}fwd longreader" primer energy-transfer ABI_373_377 "mob377longrngrxlET" primer energy-transfer ABI_373_377 "ET{40m13}960208" primer energy-transfer ABI_373_377 "DP5%LR{BD_M13_FWD_&_REV}" primer big-dye ABI_373_377 "DP5%LR{BD M13 FWD & REV}" primer big-dye ABI_373_377 "ET Primers" primer energy-transfer MolDyn_MegaBACE "DP3700POP5{ET}v1.mob" primer energy-transfer ABI_3700 "DP3700POP5_ET_v2.mob" primer energy-transfer ABI_3700 "DP3700POP5_ET_v2.mob" primer energy-transfer ABI_3700 "DP3700POP5{BD-21M13}v1.mob" primer big-dye ABI_3700 "DP3700POP5{BD-M13Rev}v1.mob" primer big-dye ABI_3700 "DP3700POP6{BD-M13Rev}v1.mob" primer big-dye ABI_3700 "DP3700POP6{BD-21M13}v3.mob" primer big-dye ABI_3700 "DP3700POP6{BD-M13Rev}v2.mob" primer big-dye ABI_3700 "DP3100POP6{BD-21M13}v1.mob" primer big-dye ABI_3100 "DP3100POP6{BD-M13Rev}v1.mob" primer big-dye ABI_3100 "DyePrimer{LI-COR_IR_2.2}" primer big-dye LI-COR_4000 "DT6%Ac{A Set-AnyPrimer}" terminator rhodamine ABI_373_377 "DT6%Ac{A_Set-AnyPrimer}" terminator rhodamine ABI_373_377 "DT6%25Ac{A_Set-AnyPrimer}" terminator rhodamine ABI_373_377 "DyeTerm{T7}-Set B" terminator rhodamine ABI_373_377 "DyeTerm{T7}-Set_B" terminator rhodamine ABI_373_377 "FS_Dye_Terminator{AnyPrimer}" terminator rhodamine ABI_373_377 "FS Dye Terminator{AnyPrimer}" terminator rhodamine ABI_373_377 "DT4%25Ac{A Set-AnyPrimer}" terminator rhodamine ABI_373_377 "DT4%Ac{A Set-AnyPrimer}" terminator rhodamine ABI_373_377 "DT4%25Ac{A_Set-AnyPrimer}" terminator rhodamine ABI_373_377 "DT4%Ac{A_Set-AnyPrimer}" terminator rhodamine ABI_373_377 "DyeTerminator{AnyPrimer}" terminator rhodamine ABI_373_377 "DT4%25Ac{B Set-AnyPrimer}" terminator rhodamine ABI_373_377 "DT4%Ac{B Set-AnyPrimer}" terminator rhodamine ABI_373_377 "DT_{dR_Set_Any-Primer}" terminator d-rhodamine ABI_373_377 "DT {dR Set Any-Primer}" terminator d-rhodamine ABI_373_377 "DT_{dRhod_Set_Any-Primer}" terminator d-rhodamine ABI_373_377 "DT DSP{dR Set-AnyPrimer}" terminator d-rhodamine ABI_373_377 "DT_{BD_Set_Any-Primer}" terminator big-dye ABI_373_377 "DT{BD_Set_Any-Primer}" terminator big-dye ABI_373_377 "DT {BD Set Any-Primer}" terminator big-dye ABI_373_377 "DT373{BD Set-AnyPrimer}" terminator big-dye ABI_373_377 "DT_{BigDye_Set_Any-Primer}" terminator big-dye ABI_373_377 "DT_BigDye_Set_Any-Primer" terminator big-dye ABI_373_377 "373 BDT" terminator big-dye ABI_373_377 "373_BDT" terminator big-dye ABI_373_377 "ET Terminators" terminator energy-transfer MolDyn_MegaBACE "ET_MegaTerm" terminator energy-transfer MolDyn_MegaBACE "DT3700POP5{BD}v1.mob" terminator big-dye ABI_3700 "DT3700POP6{BD-MIT}v1.mob" terminator big-dye ABI_3700 "DT3700POP5{BD}v2.mob" terminator big-dye ABI_3700 "DT3700POP5{BD}v3.mob" terminator big-dye ABI_3700 "DT3700POP6{BD}v0_3.mob" terminator big-dye ABI_3700 "DT3700POP6{BD}v4.mob" terminator big-dye ABI_3700 "DT3700POP6{BD}v5.mob" terminator big-dye ABI_3700 "DT3700PO.MOB" terminator big-dye ABI_3700 "DT3700POP6{37C}.mob" terminator big-dye ABI_3700 "DT3700POP6{BD-40deg}v1.mob" terminator big-dye ABI_3700 "DT3700FSP{BD}v1.mob" terminator big-dye ABI_3700 "DT3700POP5{dRhod}v1.mob" terminator d-rhodamine ABI_3700 "DT3700POP6{dRhod}v3.mob" terminator d-rhodamine ABI_3700 "DT3700POP5{ET}.mob" terminator energy-transfer ABI_3700 "DT3100POP6{dRhod}v1.mob" terminator d-rhodamine ABI_3100 "DT3100POP6{BD}v2.mob" terminator big-dye ABI_3100 "DT3100POP6{BDv3}v1.mob" terminator big-dye ABI_3100 "MegaBACE Mobility File" unknown energy-transfer MolDyn_MegaBACE "BeckmanCEQ" terminator big-dye Beckman_CEQ_2000 # # Chromatograms with no (or empty) dye primer string. # Edit the following entry if you want phred to treat such chromatograms differently. # "" primer rhodamine ABI_373_377 # # Chromatograms with non-empty, unmatchable dye primer strings, and phred runs # with the '-process_nomatch' option. # Edit the following entry if you want phred to treat such chromatograms differently. # "__no_matching_string__" primer rhodamine ABI_373_377 # end chem_list