New Ace File Format from David Gordon at gordon@genome.washington.edu, who is the author of Consed. Refer to the accompanying sample_ace_file.txt (below) AS CO <# of bases> <# of reads in contig> <# of base segments in contig> The U or C indicates whether the contig has been complemented from the way phrap originally created it. Thus this is always U for an ace file created by phrap. BQ This starts the list of base qualities for the unpadded consensus bases. The contig is the one from the previous CO, hence no name is needed here. AF This line replaces the "AssembledFrom*" line in the previous ace file format. C or U means complemented or uncomplemented. The is the true read name (no .comp on it as with the previous ace file format.) BS This replaces the "BaseSegment*" line from the previous ace file format. RD <# of padded bases> <# of whole read info items> <# of read tags> QA This is new information not found in the previous ace file. If the entire read is low quality, then and will both be -1. DS CHROMAT_FILE: PHD_FILE: TIME: This is replaces the DESCRIPTION line from the old ace file. The following is for whole read info items. These are not fully implemented, and the format may eventually change. The read is implied by the location of the whole read info item within the ace file. They are found after the DS line for a read. WR { } The following is for transient read tags (those generated by crossmatch and phrap). They are not fully implemented, and the format may eventually change. The read is implied by the location of the whole read info item within the ace file. They are found after the WR lines for a read. RT{ } There are consensus tags now in the ace file. All consensus tags have the following format: CT{ (possibly additional information) } In the case of most consensus tag types, there is only 1 line for the consensus tag. In the case of comment tags and oligo tags, there are additional lines of information. The comment tag includes the comment on the additional lines. The oligo tag has the following information: Sample Ace File: AS 1 8 CO Contig1 1475 8 156 U agccccgggccgtggggttccttgagcactcccaaagttccaacccagga tgtccccgacgcttaaaccttccaagtctgaaacgggaaatttgatttgc gggctaggataaacgccggggagaaaggcagaactgccttttacccccca aggatatcccttgggaagggcccctttgcactcagctgctccctaattat ggcgatcctccctctatctttgtccccctgtctttcaggatccctctcAA CAACAgaccaCTCccattaaaGAAATCtccttctgatctgcgggatcACA TAAAACAGTGCCattcAAaAcgtcccttcCcccAATGTCtaagtgTggtg gagcCcttcctgcCCggctctgtgcacccacggtgcctgcatgaccccgg atGCAGTGTGCACCAGctCCCATCATTCAAgagCATGACTGTGTTGCCAA CCAGCcacCAGGCACTGGGGAGGGAGCtgaGGGAGCAcaaAAGGGATGAG CCACCCTCTGTcCcagAAGTGGAGGGCATGGGGCTTGGCTGGGCTTAGAG CTAACATACACAGGATGCTGAAAAAGAACAACACAAggtGTGTGGAGCAA AGGAAAGGGAAATCAGCTTGAAGCTGATGTTAGTGTGCTTGGGCTGAGTA CAGCCATGCTCTCAGTTGAGGCACGGTTGGCTCCCCATGGGCAAGATCCC TCCTGGCCCATCTCTCCTCTTATTCTCTATCCCTTCCCCAGGTCCCTGCC TTAGAGGTTTCACCAGAGCACAGCTCCTGCCTGTGGCCAAAACAGTATTT GGCCACTCACCGACCCAGTGTCAGC*ATCCAGATGGGTTCCACATCTCAC AACCCT*GAGCAGCAGAGAAGGGTTTGAAAGGCCAGGGGAG*AATGAAGA CGAAGGAGG*TGTTGGCAACAACACAGA*G*AGTCAGCAGCCAGAACGCC AGGTATCCACACACATAAGACATTCTAAATTTTTACTCAACAGAAATTGT CTATGTCTGTGTCTGGGCACCATGGCAACACCTTATCTCTACAAAAATTA GCGGAATGTAGTGGTGCCTGTGTGTAGTCCCAGCTATTCAAGAGGCTGAA GTGGGAGGATTGCTTGAGCCATGGAAGTCAAGGCTGTAGTGAGCCATGAT TGTGTCAATGCACTCCAGACAGAGCAAGACCCTGCTCCCACCACACACCT CaaacgaaAAAAAAaaagggcaaagatatgaactgaaatggaatatag*a gcagcaaaaggaacagaaaattgtctatgcctggttctctagtcatgtgc agaacagacagtatcccggccctattgagttcttggggcagttaggcttg tgcacccttgcttctatgccacagttagggcattcgggattcccatcctt ttccccggggttgctttttgtttgcgattaccttttcggaacaatggggg gaaattattttccaagttgggtttg BQ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23 22 23 26 24 25 25 17 17 13 14 19 21 22 22 17 17 11 8 7 10 13 18 23 28 28 31 31 32 18 18 10 10 10 12 15 8 6 6 8 8 10 15 9 11 12 15 14 15 20 20 28 30 31 24 24 22 24 25 28 23 27 24 27 18 15 15 16 21 23 18 20 13 8 7 7 12 10 9 10 10 21 12 14 14 28 27 32 24 23 20 19 15 17 15 17 19 20 13 13 13 14 14 10 10 10 23 10 10 10 10 10 11 11 18 25 24 10 10 10 10 10 14 10 11 11 11 13 12 12 10 12 10 10 10 10 10 10 14 10 12 10 10 10 10 10 10 10 14 13 15 15 17 19 24 32 37 37 37 37 32 30 30 30 28 23 23 25 15 15 20 27 32 23 22 22 27 32 34 34 21 21 12 12 12 24 32 41 45 45 37 45 45 45 45 45 37 37 37 41 41 37 37 37 41 32 32 14 14 19 32 28 37 37 41 41 45 45 37 37 37 30 30 32 32 37 37 32 28 16 16 17 32 32 37 45 37 25 25 9 9 9 25 25 37 37 37 37 37 45 40 37 37 37 45 45 37 37 37 37 38 25 25 12 25 10 10 15 32 47 52 62 62 55 43 43 34 43 43 58 58 78 77 72 72 70 70 70 74 77 69 68 55 55 55 57 61 65 70 73 68 61 64 58 56 56 64 65 67 70 70 75 79 70 70 70 70 70 70 67 71 71 71 84 63 63 62 62 62 59 59 61 61 64 64 49 42 32 10 6 18 32 35 46 47 48 47 47 47 55 55 55 55 49 46 47 47 55 55 55 54 47 47 47 48 48 54 54 54 48 48 55 47 47 47 55 49 48 48 48 55 47 48 48 47 47 47 46 48 48 48 50 44 43 44 44 49 49 73 75 82 78 74 66 66 58 54 60 68 68 61 63 47 57 45 74 85 78 70 65 62 61 61 55 73 65 59 61 75 77 80 86 81 81 83 85 85 85 90 84 78 78 73 75 78 77 86 75 76 83 79 84 87 78 72 75 72 72 76 79 82 88 90 89 89 89 89 89 90 90 90 85 85 79 83 83 90 90 90 90 90 90 90 90 90 90 90 90 90 89 89 89 90 90 90 90 90 90 90 90 90 90 90 90 90 81 66 66 62 62 62 73 89 90 90 86 86 86 86 88 88 90 90 90 90 90 90 90 88 71 68 61 61 66 66 70 65 64 70 70 76 90 90 90 90 90 90 85 90 90 90 87 87 79 79 79 79 89 74 65 71 72 79 73 73 70 75 79 76 81 81 83 80 87 89 90 82 82 90 88 88 88 88 89 86 77 77 80 79 79 79 90 90 90 90 79 79 61 58 53 76 63 57 65 76 76 76 80 89 89 89 90 90 90 90 88 88 88 88 88 88 90 90 90 90 90 90 90 90 90 90 88 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 83 79 58 43 45 68 70 61 75 76 73 68 84 88 90 90 90 90 90 89 72 54 62 62 53 55 55 80 83 80 80 83 85 83 87 83 83 83 85 85 86 86 84 81 83 82 77 78 76 76 77 77 80 88 88 87 90 90 90 90 85 84 82 71 75 62 62 37 68 75 77 74 70 71 70 72 72 80 80 80 84 83 82 66 70 55 55 55 37 55 55 55 55 55 55 55 55 54 55 55 55 48 47 47 47 47 47 47 47 47 47 47 55 50 50 50 47 47 47 47 44 44 55 48 51 51 54 54 54 54 54 55 54 54 55 55 55 55 55 55 55 55 55 55 55 55 55 51 51 51 54 51 61 61 61 61 61 61 44 42 34 34 37 37 37 44 47 47 47 61 61 61 61 61 61 61 47 49 48 47 55 54 55 55 55 55 55 44 44 44 44 46 43 43 44 44 44 51 44 47 44 34 44 44 44 44 39 39 43 42 50 42 42 38 37 38 41 50 52 55 47 47 39 44 44 46 41 42 40 43 40 41 42 38 37 42 55 50 44 44 46 48 55 55 55 37 34 34 33 42 47 42 42 42 42 55 46 46 46 48 47 48 46 43 41 39 42 39 44 44 44 48 48 38 36 36 38 38 38 44 44 44 44 44 44 42 42 36 41 40 36 36 30 33 32 29 28 28 23 12 16 10 8 8 13 14 23 20 21 28 28 31 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 AF K26-217c U 498 AF K26-526t U 510 AF K26-961c U 577 AF K26-394c U 797 AF K26-291s U 828 AF K26-822c U 883 AF K26-572c C 1 AF K26-766c C 408 BS 1 515 K26-572c BS 516 516 K26-217c BS 517 521 K26-572c BS 522 529 K26-217c BS 530 538 K26-572c BS 539 569 K26-217c BS 570 571 K26-526t BS 572 573 K26-217c BS 574 579 K26-526t BS 580 584 K26-217c BS 585 591 K26-526t BS 592 592 K26-217c BS 593 601 K26-526t BS 602 604 K26-217c BS 605 606 K26-526t BS 607 607 K26-217c BS 608 621 K26-526t BS 622 628 K26-217c BS 629 629 K26-526t BS 630 630 K26-217c BS 631 633 K26-526t BS 634 634 K26-217c BS 635 635 K26-526t BS 636 639 K26-217c BS 640 646 K26-526t BS 647 648 K26-217c BS 649 649 K26-526t BS 650 650 K26-217c BS 651 654 K26-766c BS 655 655 K26-961c BS 656 656 K26-217c BS 657 669 K26-961c BS 670 675 K26-217c BS 676 676 K26-961c BS 677 688 K26-217c BS 689 693 K26-526t BS 694 696 K26-217c BS 697 698 K26-526t BS 699 700 K26-961c BS 701 706 K26-217c BS 707 707 K26-961c BS 708 708 K26-217c BS 709 709 K26-961c BS 710 710 K26-526t BS 711 775 K26-961c BS 776 776 K26-766c BS 777 777 K26-961c BS 778 834 K26-766c BS 835 837 K26-961c BS 838 840 K26-394c BS 841 882 K26-766c BS 883 884 K26-394c BS 885 898 K26-766c BS 899 899 K26-961c BS 900 900 K26-766c BS 901 901 K26-961c BS 902 934 K26-766c BS 935 935 K26-394c BS 936 936 K26-766c BS 937 937 K26-394c BS 938 940 K26-766c BS 941 944 K26-394c BS 945 945 K26-291s BS 946 948 K26-822c BS 949 949 K26-766c BS 950 951 K26-822c BS 952 954 K26-766c BS 955 955 K26-822c BS 956 957 K26-394c BS 958 962 K26-822c BS 963 963 K26-394c BS 964 970 K26-822c BS 971 971 K26-394c BS 972 972 K26-822c BS 973 973 K26-394c BS 974 976 K26-822c BS 977 979 K26-394c BS 980 986 K26-291s BS 987 987 K26-394c BS 988 1004 K26-822c BS 1005 1009 K26-394c BS 1010 1012 K26-291s BS 1013 1014 K26-394c BS 1015 1021 K26-822c BS 1022 1022 K26-394c BS 1023 1026 K26-822c BS 1027 1028 K26-291s BS 1029 1036 K26-822c BS 1037 1052 K26-291s BS 1053 1053 K26-822c BS 1054 1060 K26-291s BS 1061 1061 K26-822c BS 1062 1062 K26-291s BS 1063 1065 K26-394c BS 1066 1068 K26-822c BS 1069 1079 K26-291s BS 1080 1081 K26-822c BS 1082 1082 K26-291s BS 1083 1084 K26-822c BS 1085 1089 K26-291s BS 1090 1094 K26-822c BS 1095 1096 K26-394c BS 1097 1099 K26-822c BS 1100 1100 K26-291s BS 1101 1104 K26-822c BS 1105 1105 K26-394c BS 1106 1110 K26-822c BS 1111 1115 K26-291s BS 1116 1122 K26-822c BS 1123 1124 K26-291s BS 1125 1135 K26-822c BS 1136 1136 K26-394c BS 1137 1139 K26-822c BS 1140 1140 K26-291s BS 1141 1150 K26-822c BS 1151 1155 K26-291s BS 1156 1161 K26-822c BS 1162 1164 K26-291s BS 1165 1167 K26-822c BS 1168 1173 K26-291s BS 1174 1175 K26-822c BS 1176 1189 K26-291s BS 1190 1196 K26-822c BS 1197 1199 K26-291s BS 1200 1221 K26-822c BS 1222 1225 K26-291s BS 1226 1227 K26-822c BS 1228 1228 K26-394c BS 1229 1231 K26-291s BS 1232 1233 K26-822c BS 1234 1235 K26-291s BS 1236 1236 K26-394c BS 1237 1239 K26-291s BS 1240 1242 K26-822c BS 1243 1244 K26-291s BS 1245 1247 K26-394c BS 1248 1255 K26-822c BS 1256 1256 K26-291s BS 1257 1257 K26-394c BS 1258 1258 K26-291s BS 1259 1259 K26-822c BS 1260 1260 K26-394c BS 1261 1265 K26-291s BS 1266 1266 K26-822c BS 1267 1268 K26-394c BS 1269 1269 K26-822c BS 1270 1275 K26-291s BS 1276 1280 K26-822c BS 1281 1281 K26-394c BS 1282 1290 K26-822c BS 1291 1292 K26-291s BS 1293 1294 K26-822c BS 1295 1297 K26-291s BS 1298 1301 K26-822c BS 1302 1302 K26-291s BS 1303 1475 K26-822c RD K26-217c 563 0 0 tcccCgtgagatcatcctgaAGTGGAGGGCATGGGGCTTGGCTGGGCTTA GAGCTAACATACACAGGATGCTGAAAAAGAACAACACAAgntGTGTGGAG CAAAGGAAAGGGAAATCAGCTTGAAGCTGATGTTAGTGTGCTTGGGCTGA GTACAGCCATGctntCAGTTGAGGCACGGTTGGCTCCCCATGGGCAAGAT CCCTCCTGGCCCATCTCTCCTCTTATTCTCTATCCCTTCCCCAGGTCCCT GCCTTAGAGGTTTCACCAGAGCACAGCTCCTGcctgtggccaAAACAGTA TTTGGCCACTCACcGAcccagTGTCAGC*atccaGatggGtTccacatct cacaaccct*gggcagcagagaaggggtttaaaggccagggggg*tatta agccgaaggagg*ttttggaaacaccaaggg*g*ggtcagaccccaacgc cagtttccccaaaaaggggcattcaaatttttttctcagagattttcttt ccttttttgggccccgggaaccttttttaaaaaatgggggattgggcccc cttggcccccctc QA 19 349 19 424 DS CHROMAT_FILE: K26-217c PHD_FILE: K26-217c.phd.1 TIME: Thu Sep 12 15:42:38 1996 RD K26-526t 687 0 0 ccgtcctgagtggAGggcatggggcttggctggGCTTAGAGCTAACATAC ACAGGATGCTGAAAAAGAACAACACAAggtGTGTGGAGCAAAGGAAAGGG AAATCAGCTTGAAGCTGATGTTAGTGTGCTTGGGCTGAGTACagcnatgc tntgaGTTGAggaacgGTTGGCTCCCCATGGGCAAGATCCCTCCTGGCCC ATCTCTCCTCTTATTCTCTATCCCTTCCCCAGGTCCCTGCCTTAGAGGTT TCACcAgAGCACAgCTCctgcctgtggccaAAACAGTATTTGGccACTCA CCGAcCCAGTGTcagt*atccAGATGGGttccACATCtcacagcccT*Ga gcAgcagngaaGGGTttgaaagggcAgggggggaatgaaGacggaggagg gtgttggcaaccacacaga*ggagtcaggaggcaggacggcaggtatccA Cacacattaggcattttaaatttttacttaacaggaattgtctatggctg ggtttgggaac*atgggaacacctattcttt*caaaa*ttggggggat*t agtggtgc*tgt*tatagtcccgttattaaGggttaagtggggtttcttt gccaggaggtaaggtttggggccctatttttaattacttggaaggaagcc ttttcccagataaggaaaaaggaggtTTtttgtttta QA 12 353 9 572 DS CHROMAT_FILE: K26-526t PHD_FILE: K26-526t.phd.1 TIME: Thu Sep 12 15:42:33 1996 RD K26-961c 517 0 0 aatattaccggcgcggggttCcgTCGGAAAGGGAAATCAGCTTGAAGCTG ATGTTAGTGTGCTTGgGCTGAGTacaGCCATGCTCTCAGTTGAGGCACGG TTGGCTCCCCATGGGCAAGATCCCTCCTGGCCCATCTCTCCTCTTATTCT CTATCCCTTCCCCAGGTCCCTGCCTTAGAGGTTTCACCAGAGCACAGCTC CTGccTGTGGCCAAAACAGTATTTGGccactgaccGACCCagtGTCAGC* ATCCAGATGGGTTCCACATCTCacaaccCT*GAGCAGCAGAGAAGGGTTT GAaagGcCAGGGGAG*AATGAAGACgaaggaGG*TGTTgGcaacaacaca gA*G*AGTCAGCAGccAgaacgccaggtatccacACACATaaggCATtct aaatttttaCtcaACaggaattgtctATgtctgtgTCtgggcaccagggc a*cacctTATCTCTAcaaaaat*agcgggatttagtggtgcttgtgtg** g*cccagctattcaggg QA 20 415 26 514 DS CHROMAT_FILE: K26-961c PHD_FILE: K26-961c.phd.1 TIME: Thu Sep 12 15:42:37 1996 RD K26-394c 628 0 0 ctgcgtatcgtcacc*accCAGTGTCagctatcCAGATGGGTTCCACATC TcacaacCCT*GAGCAGCAGAGAAGGGTTTGAAAGGCCAGGGGAG*AATG AAGACga*gGAGG*tgTTGGCAACAacacagA*G*AGTCAGCAGCCAGAA CGCCAGGTATCCACACACATAAGACATTCTAAATTTTTACTCAACAGAAA TTGTCTATGTCTGTGTCTGGgcaCCATGGCAACACCTTATCTCTACAAAA ATTAGCGGAATGTAGTGGTGCCTGtgtGTAGTCCCAGCTATTCaaGAGGC TGAAGTGGGAGGATTGCTTGagccaTggaagtcaagGCTGTAGTGagCCa TGattgtgtCaATGCACtcnagAcagagcaaGACCctgctcccaccacac aacttaanaggaaaaaaaaaaaggaaaagaaatgaaatgaaatgggatat ag*aa*aggaaaagga*cagaaa*ttgtctatgcctggt*ctctagtaat gtcagtcagccagtttccagccttttggtcttgggcattctgctgtcaca atctcttggaacgttgggcagggaatcccatttttcccccgtttTttttt gtggcaattaccttttggaaccctgggt QA 18 368 11 502 DS CHROMAT_FILE: K26-394c PHD_FILE: K26-394c.phd.1 TIME: Thu Sep 12 15:42:32 1996 RD K26-291s 556 0 0 gaggatcgcttTCCacatctcaCAaccctcgagCAgCagagAAgggTTTG AAAGGCCAGGGGAG*AATGAAGACGa*ggAGG*TGTTGGCAACAacacag a*G*AGTCAGCAGCCAGAACGCCAggtaTCCAcacacataAgccatTCTA AATTTTTACTCAAcagAAATTGTCTAtgTCTGTGTCTGggcacCATGGCA ACACCTTATCTCTACAAAAATTAGCGGAATGTAGTggtGCCTGTGTGTAG TCCCAGCTATTCAAgaggctGAAGTgcgaggatTGCTTgagCCATGGAAG TcaaggctgtAGTGAgccatgatTGTGTCAATGCACTCCAGACAGAGCAA GACCCTGCTCCCAccaCACAcctcaaaaggtattgattaaaGGAaAagaa atgaaAtgaaatgagataaaggaaaaggaaaaagaacaggatattgTCtA Tgcctgat*ctctagt*atgtgcagacagaagtttccagccactgagttc ttgccccagctaactttttacaaatccccctggggaaggtttggcccagg cagatg QA 11 373 11 476 DS CHROMAT_FILE: K26-291s PHD_FILE: K26-291s.phd.1 TIME: Thu Sep 12 15:42:31 1996 RD K26-822c 593 0 0 ggggatccg*tcatgagacga*ggAGG*TGTTGGCAACa*ca*agaag*A GTCAGCAGCCAGAACGCCAGGTATCCACACACATAAGACATTCTAAATTT TTACTCAACAGAAATTGTCTATGTCTGtgtCTGGGCACCATGGCAACACC TTATCTCTACAAAAATTAGCGGAATGTAGTggTGCCTGtgtGTAGTCCCA GCTATTCAAGAGGCTGAAGTGGGAGGATTGCTTGAGCCATGGAAGTCAAG GCTGTAGTGAGCCATGATTGtgtCAATGCACTCCAGAcAgAGCaAgacCC tgCTCccACCACACacctCaaacgaaAAAAAAaaagggcaaagatatgaa ctgaaatggaatatag*agcagcaaaaggaacagaaaattgtcTATGcct ggttctctagtcatgtgcagaacagacagtatcccggccctattgagttc ttggggcagttaggcttgtgcacccttgcttctatgccacagttagggca ttcgggattcccatccttttccccggggttgctttttgtttgcgattacc ttttcggaacaatggggggaaattattttccaagttgggtttg QA 25 333 16 593 DS CHROMAT_FILE: K26-822c PHD_FILE: K26-822c.phd.1 TIME: Thu Sep 12 15:42:36 1996 RD K26-572c 594 0 0 agccccgggccgtggggttccttgagcactcccaaagttccaacccagga tgtccccgacgcttaaaCcttccaagtctgaaacgggaaAtttgatttgc gggctaggataaacgccggggagaaaggcagaactgccttttaccCCcca aggatatcccttgggaagggcccctttgcactcagctgctccctaattat ggcgatcctccctctatctttgtccccctgtctttcaggatccctctcAA CAACAgaccaCTCccattaaaGAAATCtccttctgatctgcgggatcACA TAAAACAGTGCCattcAAaAcgtcccttcCcccAATGTCtaagtgTggtg gagcCcttcctgcCCggctctgtgcacccacggtgcctgcatgaccccgg atGCAGTGTGCACCAGctCCCATCATTCAAgagCATGACTGTGTTGCCAA CCAGCcacCAGGCACTGGGGAGGGAGCtgaGGGAGCAcaaAAGGGATGAG CCACCCTCTGTcCcagAAGTGGAgcgcATGGGGCTTGGCTgggcTTAGAG CtaacaTACACAGGATGCTGAAaaagaaCAACACaatagtaaca QA 249 584 1 586 DS CHROMAT_FILE: K26-572c PHD_FILE: K26-572c.phd.1 TIME: Thu Sep 12 15:42:34 1996 RD K26-766c 603 0 0 gaataattggaatcacggcaaaaatttggggacaaatattatttccaaaa ttcccccagcaatcacacaggccctcaagcccatcaactcggtcattcac cgattttcctaaatcaagggtattagcttg*ctgggcttacacctaacat acacagcatgctcaatgagaAcaatacgagctgtgtggagcacaggaagg ggaAAtcagcctgaagctgctgttagtgtgcttgg*ctgAGTACAGCcaT GCTctCAGTTgaggcAcggTTGGCTCCCCATGGgCAAGATCCCTCCTggC CCATCTCTCCTCTTaTTCTCTATCCCTTCCCCAGGTCCCTGCCTTAGagg tttCACCAGAGCACAGCTCCTGCCTGTGGCCAAAACAGTATTTGGCCACT CACCGACCCAGTGTCAGC*ATCCAGATGGGTTCCACATCTCACAACCCT* GAGCAGCAGAGAAGGGTTTGAAAGGCCAGGGGAG*AATGAAGACGAAGGA GG*TGTTGGCAACAACACAGA*G*AGTCAGCAGCCAGAACGCCAGGTATC CACACACATAagaCATtctaAATTTTTACTCAAacgatcCccggaaccac acg QA 240 584 126 583 DS CHROMAT_FILE: K26-766c PHD_FILE: K26-766c.phd.1 TIME: Thu Sep 12 15:42:35 1996 CT{ Contig1 repeat consed 976 986 971218 } CT{ Contig1 comment consed 996 1007 971218 This is line 1 of a comment There may be any number of lines } CT{ Contig1 oligo consed 963 987 971218 standard.1 acataagacattctaaatttttact 50 U seq from clone } -- ------------------------------------------------------------------------------ David Gordon gordon@genome.washington.edu Dept. of Molecular Biotechnology (206) 685-4465 Box 352145 University of Washington Seattle, WA 98195 ------------------------------------------------------------------------------