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birch - application launcher
bldna - DNA sequence analysis
blncbi - run Entrez queries at NCBI
build complex queries
examine output in
blncbi spreadsheet
DNAML
maximum
likelihood
phylogeny
retrieve sequences
from NCBI
extract coding
sequences
blprotein - protein sequence analysis
translate
search for more defensins using
TBLASTN
retrieve hits and
combine into a
single set of
proteins
DRAWTREE
blpalign - work with protein alignments
MRTRANS multiple DNA alignment
from protein alignment
1. Create plant defensin dataset
2. Multiple alignment and phylogeny
(using a small sample of the dataset)
bltree - work with trees
blnalign - work with DNA alignments
blnfetch - sequence retrieval