/home/psgendb/BIRCHDEV/install/quast-5.2.0/quast.pyc --min-identity 90.0 --colors #E31A1C,#1F78B4 --ls solid,solid --no-check-meta --contig-thresholds 1000,5000,10000,25000,50000 -t 16 /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_test_output/quast_corrected_input/meta_contigs_1_not_aligned_anywhere.fasta /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_test_output/quast_corrected_input/meta_contigs_2_not_aligned_anywhere.fasta -o /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_test_output/not_aligned --labels "meta_contigs_1, meta_contigs_2" Started: 2023-07-07 16:03:48 Logging to /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_test_output/not_aligned/quast.log CWD: /home/psgendb/BIRCHDEV/install/quast-5.2.0 Main parameters: MODE: meta, threads: 16, min contig length: 500, min alignment length: 65, min alignment IDY: 90.0, \ ambiguity: one, min local misassembly length: 200, min extensive misassembly length: 1000 Contigs: Pre-processing... 1 /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_test_output/quast_corrected_input/meta_contigs_1_not_aligned_anywhere.fasta ==> meta_contigs_1 2 /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_test_output/quast_corrected_input/meta_contigs_2_not_aligned_anywhere.fasta ==> meta_contigs_2 2023-07-07 16:03:48 Running Basic statistics processor... Contig files: 1 meta_contigs_1 2 meta_contigs_2 Calculating N50 and L50... 1 meta_contigs_1, N50 = 1610, L50 = 1, auN = 1409.0, Total length = 2730, GC % = 51.94, # N's per 100 kbp = 0.00 2 meta_contigs_2, N50 = 885, L50 = 1, auN = 885.0, Total length = 885, GC % = 0.00, # N's per 100 kbp = 0.00 Drawing Nx plot... saved to /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_test_output/not_aligned/basic_stats/Nx_plot.pdf Drawing cumulative plot... saved to /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_test_output/not_aligned/basic_stats/cumulative_plot.pdf Drawing GC content plot... saved to /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_test_output/not_aligned/basic_stats/GC_content_plot.pdf Drawing meta_contigs_1 GC content plot... saved to /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_test_output/not_aligned/basic_stats/meta_contigs_1_GC_content_plot.pdf Drawing meta_contigs_2 GC content plot... saved to /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_test_output/not_aligned/basic_stats/meta_contigs_2_GC_content_plot.pdf Done. NOTICE: Genes are not predicted by default. Use --gene-finding or --glimmer option to enable it. 2023-07-07 16:03:50 Creating large visual summaries... This may take a while: press Ctrl-C to skip this step.. 1 of 2: Creating PDF with all tables and plots... 2 of 2: Creating Icarus viewers... Done 2023-07-07 16:03:51 RESULTS: Text versions of total report are saved to /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_test_output/not_aligned/report.txt, report.tsv, and report.tex Text versions of transposed total report are saved to /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_test_output/not_aligned/transposed_report.txt, transposed_report.tsv, and transposed_report.tex HTML version (interactive tables and plots) is saved to /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_test_output/not_aligned/report.html PDF version (tables and plots) is saved to /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_test_output/not_aligned/report.pdf Icarus (contig browser) is saved to /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_test_output/not_aligned/icarus.html