This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by Samtools configure 1.7, which was
generated by GNU Autoconf 2.68.  Invocation command line was

  $ ./configure 

## --------- ##
## Platform. ##
## --------- ##

hostname = venus
uname -m = x86_64
uname -r = 2.6.32-696.18.7.el6.x86_64
uname -s = Linux
uname -v = #1 SMP Thu Dec 28 20:15:47 EST 2017

/usr/bin/uname -p = unknown
/bin/uname -X     = unknown

/bin/arch              = x86_64
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /opt/rh/python27/root/usr/bin
PATH: /opt/rh/python27/root/usr/bin
PATH: /home/psgendb/BIRCHDEV/local/script
PATH: /home/psgendb/BIRCHDEV/local/bin-linux-x86_64
PATH: /usr/lib64/qt-3.3/bin
PATH: /usr/local/bin
PATH: /bin
PATH: /usr/bin
PATH: /opt/thinlinc/bin
PATH: /usr/local/bin
PATH: /usr/bin/X11
PATH: /usr/dt/bin
PATH: /usr/openwin/bin
PATH: /sbin
PATH: /usr/sbin
PATH: /usr/local/sbin
PATH: /var/cfengine/bin
PATH: /home/psgendb/BIRCHDEV/script
PATH: /home/psgendb/BIRCHDEV/bin-linux-x86_64
PATH: /home/psgendb/BIRCHDEV/local/pkg/EMBOSS/linux-x86_64/bin
PATH: /home/psgendb/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2153: checking for gcc
configure:2169: found /usr/bin/gcc
configure:2180: result: gcc
configure:2409: checking for C compiler version
configure:2418: gcc --version >&5
gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:2429: $? = 0
configure:2418: gcc -v >&5
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.4.7 20120313 (Red Hat 4.4.7-18) (GCC) 
configure:2429: $? = 0
configure:2418: gcc -V >&5
gcc: '-V' option must have argument
configure:2429: $? = 1
configure:2418: gcc -qversion >&5
gcc: unrecognized option '-qversion'
gcc: no input files
configure:2429: $? = 1
configure:2449: checking whether the C compiler works
configure:2471: gcc    conftest.c  >&5
configure:2475: $? = 0
configure:2523: result: yes
configure:2526: checking for C compiler default output file name
configure:2528: result: a.out
configure:2534: checking for suffix of executables
configure:2541: gcc -o conftest    conftest.c  >&5
configure:2545: $? = 0
configure:2567: result: 
configure:2589: checking whether we are cross compiling
configure:2597: gcc -o conftest    conftest.c  >&5
configure:2601: $? = 0
configure:2608: ./conftest
configure:2612: $? = 0
configure:2627: result: no
configure:2632: checking for suffix of object files
configure:2654: gcc -c   conftest.c >&5
configure:2658: $? = 0
configure:2679: result: o
configure:2683: checking whether we are using the GNU C compiler
configure:2702: gcc -c   conftest.c >&5
configure:2702: $? = 0
configure:2711: result: yes
configure:2720: checking whether gcc accepts -g
configure:2740: gcc -c -g  conftest.c >&5
configure:2740: $? = 0
configure:2781: result: yes
configure:2798: checking for gcc option to accept ISO C89
configure:2862: gcc  -c -g -O2  conftest.c >&5
configure:2862: $? = 0
configure:2875: result: none needed
configure:2904: checking for special C compiler options needed for large files
configure:2949: result: no
configure:2955: checking for _FILE_OFFSET_BITS value needed for large files
configure:2980: gcc -c -g -O2  conftest.c >&5
configure:2980: $? = 0
configure:3012: result: no
configure:3145: checking location of HTSlib source tree
configure:3166: result: htslib-1.7
configure:3392: checking for NcursesW wide-character library
configure:3416: gcc -o conftest -g -O2   conftest.c  -lncursesw >&5
configure:3416: $? = 0
configure:3425: result: yes
configure:3445: checking for working ncursesw/curses.h
configure:3478: gcc -o conftest -g -O2   conftest.c  -lncursesw >&5
configure:3478: $? = 0
configure:3487: result: yes
configure:3509: checking for working ncursesw.h
configure:3542: gcc -o conftest -g -O2   conftest.c  -lncursesw >&5
conftest.c:17:46: error: ncursesw.h: No such file or directory
conftest.c: In function 'main':
conftest.c:23: error: 'chtype' undeclared (first use in this function)
conftest.c:23: error: (Each undeclared identifier is reported only once
conftest.c:23: error: for each function it appears in.)
conftest.c:23: error: expected ';' before 'a'
conftest.c:24: error: 'KEY_LEFT' undeclared (first use in this function)
conftest.c:25: error: expected ';' before 'c'
conftest.c:26: error: 'attr_t' undeclared (first use in this function)
conftest.c:26: error: expected ';' before 'd'
conftest.c:27: error: 'cchar_t' undeclared (first use in this function)
conftest.c:27: error: expected ';' before 'e'
conftest.c:28: error: 'wint_t' undeclared (first use in this function)
conftest.c:28: error: expected ';' before 'f'
conftest.c:29: error: 'stdscr' undeclared (first use in this function)
conftest.c:32: error: 'COLOR_WHITE' undeclared (first use in this function)
conftest.c:32: error: 'COLOR_RED' undeclared (first use in this function)
conftest.c:33: error: 'd' undeclared (first use in this function)
conftest.c:33: error: 'NULL' undeclared (first use in this function)
conftest.c:34: error: 'f' undeclared (first use in this function)
configure:3542: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "Samtools"
| #define PACKAGE_TARNAME "samtools"
| #define PACKAGE_VERSION "1.7"
| #define PACKAGE_STRING "Samtools 1.7"
| #define PACKAGE_BUGREPORT "samtools-help@lists.sourceforge.net"
| #define PACKAGE_URL "http://www.htslib.org/"
| #define HAVE_NCURSESW 1
| #define HAVE_CURSES 1
| #define HAVE_CURSES_ENHANCED 1
| #define HAVE_CURSES_COLOR 1
| #define HAVE_CURSES_OBSOLETE 1
| #define HAVE_NCURSESW_CURSES_H 1
| /* end confdefs.h.  */
| 
|                         #define _XOPEN_SOURCE_EXTENDED 1
|                         #include <ncursesw.h>
| 
| int
| main ()
| {
| 
|                         chtype a = A_BOLD;
|                         int b = KEY_LEFT;
|                         chtype c = COLOR_PAIR(1) & A_COLOR;
|                         attr_t d = WA_NORMAL;
|                         cchar_t e;
|                         wint_t f;
|                         int g = getattrs(stdscr);
|                         int h = getcurx(stdscr) + getmaxx(stdscr);
|                         initscr();
|                         init_pair(1, COLOR_WHITE, COLOR_RED);
|                         wattr_set(stdscr, d, 0, NULL);
|                         wget_wch(stdscr, &f);
| 
|   ;
|   return 0;
| }
configure:3551: result: no
configure:3573: checking for working ncurses.h
configure:3606: gcc -o conftest -g -O2   conftest.c  -lncursesw >&5
configure:3606: $? = 0
configure:3615: result: yes
configure:4134: checking for zlib.h
configure:4134: gcc -c -g -O2  conftest.c >&5
configure:4134: $? = 0
configure:4134: result: yes
configure:4143: checking for inflate in -lz
configure:4168: gcc -o conftest -g -O2   conftest.c -lz   >&5
configure:4168: $? = 0
configure:4177: result: yes
configure:4203: checking for library containing regcomp
configure:4234: gcc -o conftest -g -O2   conftest.c  >&5
configure:4234: $? = 0
configure:4251: result: none required
configure:4389: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by Samtools config.status 1.7, which was
generated by GNU Autoconf 2.68.  Invocation command line was

  CONFIG_FILES    = 
  CONFIG_HEADERS  = 
  CONFIG_LINKS    = 
  CONFIG_COMMANDS = 
  $ ./config.status 

on venus

config.status:815: creating config.mk
config.status:815: creating config.h
configure:5626: === configuring in htslib-1.7 (/home/psgendb/BIRCHDEV/install/samtools-1.7/htslib-1.7)
configure:5689: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local'  --cache-file=/dev/null --srcdir=.

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_c_compiler_gnu=yes
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CURSES_LIB_set=
ac_cv_env_CURSES_LIB_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_header_zlib_h=yes
ac_cv_lib_z_inflate=yes
ac_cv_objext=o
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_search_regcomp='none required'
ac_cv_sys_file_offset_bits=no
ac_cv_sys_largefile_CC=no
ax_cv_curses=yes
ax_cv_curses_color=yes
ax_cv_curses_enhanced=yes
ax_cv_curses_obsolete=yes
ax_cv_curses_which=ncursesw
ax_cv_header_ncurses_h_with_ncursesw=yes
ax_cv_header_ncursesw_curses_h=yes
ax_cv_header_ncursesw_h=no
ax_cv_htslib=yes
ax_cv_htslib_which=source
ax_cv_ncursesw=yes

## ----------------- ##
## Output variables. ##
## ----------------- ##

CC='gcc'
CFLAGS='-g -O2'
CPPFLAGS=''
CURSES_LIB='-lncursesw'
DEFS='-DHAVE_CONFIG_H'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EXEEXT=''
HTSDIR='htslib-1.7'
HTSLIB_CPPFLAGS='-Ihtslib-1.7'
HTSLIB_LDFLAGS='-Lhtslib-1.7'
Hinstall='#'
Hsource=''
LDFLAGS=''
LIBOBJS=''
LIBS=''
LTLIBOBJS=''
OBJEXT='o'
PACKAGE_BUGREPORT='samtools-help@lists.sourceforge.net'
PACKAGE_NAME='Samtools'
PACKAGE_STRING='Samtools 1.7'
PACKAGE_TARNAME='samtools'
PACKAGE_URL='http://www.htslib.org/'
PACKAGE_VERSION='1.7'
PATH_SEPARATOR=':'
SHELL='/bin/sh'
ac_ct_CC='gcc'
bindir='${exec_prefix}/bin'
build_alias=''
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host_alias='unknown-Linux'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr/local'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=' htslib-1.7'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "Samtools"
#define PACKAGE_TARNAME "samtools"
#define PACKAGE_VERSION "1.7"
#define PACKAGE_STRING "Samtools 1.7"
#define PACKAGE_BUGREPORT "samtools-help@lists.sourceforge.net"
#define PACKAGE_URL "http://www.htslib.org/"
#define HAVE_NCURSESW 1
#define HAVE_CURSES 1
#define HAVE_CURSES_ENHANCED 1
#define HAVE_CURSES_COLOR 1
#define HAVE_CURSES_OBSOLETE 1
#define HAVE_NCURSESW_CURSES_H 1
#define HAVE_CURSES_ENHANCED 1
#define HAVE_CURSES_COLOR 1
#define HAVE_CURSES_OBSOLETE 1
#define HAVE_NCURSES_H 1
#define HAVE_LIBZ 1

configure: exit 0