This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by HTSlib configure 1.7, which was generated by GNU Autoconf 2.68. Invocation command line was $ ./configure --disable-option-checking --prefix=/usr/local --cache-file=/dev/null --srcdir=. ## --------- ## ## Platform. ## ## --------- ## hostname = venus uname -m = x86_64 uname -r = 2.6.32-696.18.7.el6.x86_64 uname -s = Linux uname -v = #1 SMP Thu Dec 28 20:15:47 EST 2017 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /opt/rh/python27/root/usr/bin PATH: /opt/rh/python27/root/usr/bin PATH: /home/psgendb/BIRCHDEV/local/script PATH: /home/psgendb/BIRCHDEV/local/bin-linux-x86_64 PATH: /usr/lib64/qt-3.3/bin PATH: /usr/local/bin PATH: /bin PATH: /usr/bin PATH: /opt/thinlinc/bin PATH: /usr/local/bin PATH: /usr/bin/X11 PATH: /usr/dt/bin PATH: /usr/openwin/bin PATH: /sbin PATH: /usr/sbin PATH: /usr/local/sbin PATH: /var/cfengine/bin PATH: /home/psgendb/BIRCHDEV/script PATH: /home/psgendb/BIRCHDEV/bin-linux-x86_64 PATH: /home/psgendb/BIRCHDEV/local/pkg/EMBOSS/linux-x86_64/bin PATH: /home/psgendb/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2150: checking for gcc configure:2166: found /usr/bin/gcc configure:2177: result: gcc configure:2406: checking for C compiler version configure:2415: gcc --version >&5 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18) Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:2426: $? = 0 configure:2415: gcc -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.4.7 20120313 (Red Hat 4.4.7-18) (GCC) configure:2426: $? = 0 configure:2415: gcc -V >&5 gcc: '-V' option must have argument configure:2426: $? = 1 configure:2415: gcc -qversion >&5 gcc: unrecognized option '-qversion' gcc: no input files configure:2426: $? = 1 configure:2446: checking whether the C compiler works configure:2468: gcc conftest.c >&5 configure:2472: $? = 0 configure:2520: result: yes configure:2523: checking for C compiler default output file name configure:2525: result: a.out configure:2531: checking for suffix of executables configure:2538: gcc -o conftest conftest.c >&5 configure:2542: $? = 0 configure:2564: result: configure:2586: checking whether we are cross compiling configure:2594: gcc -o conftest conftest.c >&5 configure:2598: $? = 0 configure:2605: ./conftest configure:2609: $? = 0 configure:2624: result: no configure:2629: checking for suffix of object files configure:2651: gcc -c conftest.c >&5 configure:2655: $? = 0 configure:2676: result: o configure:2680: checking whether we are using the GNU C compiler configure:2699: gcc -c conftest.c >&5 configure:2699: $? = 0 configure:2708: result: yes configure:2717: checking whether gcc accepts -g configure:2737: gcc -c -g conftest.c >&5 configure:2737: $? = 0 configure:2778: result: yes configure:2795: checking for gcc option to accept ISO C89 configure:2859: gcc -c -g -O2 conftest.c >&5 configure:2859: $? = 0 configure:2872: result: none needed configure:2935: checking for ranlib configure:2951: found /usr/bin/ranlib configure:2962: result: ranlib configure:2985: checking for grep that handles long lines and -e configure:3043: result: /bin/grep configure:3068: checking for C compiler warning flags configure:3181: result: -Wall configure:3298: checking for special C compiler options needed for large files configure:3343: result: no configure:3349: checking for _FILE_OFFSET_BITS value needed for large files configure:3374: gcc -c -Wall -g -O2 conftest.c >&5 configure:3374: $? = 0 configure:3406: result: no configure:3489: checking for _LARGEFILE_SOURCE value needed for large files configure:3508: gcc -o conftest -Wall -g -O2 conftest.c >&5 configure:3508: $? = 0 configure:3536: result: no configure:3619: checking shared library type for unknown-Linux configure:3647: result: plain .so configure:3656: checking how to run the C preprocessor configure:3687: gcc -E conftest.c configure:3687: $? = 0 configure:3701: gcc -E conftest.c conftest.c:10:28: error: ac_nonexistent.h: No such file or directory configure:3701: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HTSlib" | #define PACKAGE_TARNAME "htslib" | #define PACKAGE_VERSION "1.7" | #define PACKAGE_STRING "HTSlib 1.7" | #define PACKAGE_BUGREPORT "samtools-help@lists.sourceforge.net" | #define PACKAGE_URL "http://www.htslib.org/" | #define HAVE_FSEEKO 1 | /* end confdefs.h. */ | #include configure:3726: result: gcc -E configure:3746: gcc -E conftest.c configure:3746: $? = 0 configure:3760: gcc -E conftest.c conftest.c:10:28: error: ac_nonexistent.h: No such file or directory configure:3760: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HTSlib" | #define PACKAGE_TARNAME "htslib" | #define PACKAGE_VERSION "1.7" | #define PACKAGE_STRING "HTSlib 1.7" | #define PACKAGE_BUGREPORT "samtools-help@lists.sourceforge.net" | #define PACKAGE_URL "http://www.htslib.org/" | #define HAVE_FSEEKO 1 | /* end confdefs.h. */ | #include configure:3789: checking for egrep configure:3851: result: /bin/grep -E configure:3856: checking for ANSI C header files configure:3876: gcc -c -Wall -g -O2 conftest.c >&5 configure:3876: $? = 0 configure:3949: gcc -o conftest -Wall -g -O2 conftest.c >&5 configure:3949: $? = 0 configure:3949: ./conftest configure:3949: $? = 0 configure:3960: result: yes configure:3973: checking for sys/types.h configure:3973: gcc -c -Wall -g -O2 conftest.c >&5 configure:3973: $? = 0 configure:3973: result: yes configure:3973: checking for sys/stat.h configure:3973: gcc -c -Wall -g -O2 conftest.c >&5 configure:3973: $? = 0 configure:3973: result: yes configure:3973: checking for stdlib.h configure:3973: gcc -c -Wall -g -O2 conftest.c >&5 configure:3973: $? = 0 configure:3973: result: yes configure:3973: checking for string.h configure:3973: gcc -c -Wall -g -O2 conftest.c >&5 configure:3973: $? = 0 configure:3973: result: yes configure:3973: checking for memory.h configure:3973: gcc -c -Wall -g -O2 conftest.c >&5 configure:3973: $? = 0 configure:3973: result: yes configure:3973: checking for strings.h configure:3973: gcc -c -Wall -g -O2 conftest.c >&5 configure:3973: $? = 0 configure:3973: result: yes configure:3973: checking for inttypes.h configure:3973: gcc -c -Wall -g -O2 conftest.c >&5 configure:3973: $? = 0 configure:3973: result: yes configure:3973: checking for stdint.h configure:3973: gcc -c -Wall -g -O2 conftest.c >&5 configure:3973: $? = 0 configure:3973: result: yes configure:3973: checking for unistd.h configure:3973: gcc -c -Wall -g -O2 conftest.c >&5 configure:3973: $? = 0 configure:3973: result: yes configure:3991: checking for stdlib.h configure:3991: result: yes configure:3991: checking for unistd.h configure:3991: result: yes configure:3991: checking for sys/param.h configure:3991: gcc -c -Wall -g -O2 conftest.c >&5 configure:3991: $? = 0 configure:3991: result: yes configure:4011: checking for getpagesize configure:4011: gcc -o conftest -Wall -g -O2 conftest.c >&5 configure:4011: $? = 0 configure:4011: result: yes configure:4020: checking for working mmap configure:4167: gcc -o conftest -Wall -g -O2 conftest.c >&5 configure:4167: $? = 0 configure:4167: ./conftest configure:4167: $? = 0 configure:4177: result: yes configure:4189: checking for gmtime_r configure:4189: gcc -o conftest -Wall -g -O2 conftest.c >&5 configure:4189: $? = 0 configure:4189: result: yes configure:4189: checking for fsync configure:4189: gcc -o conftest -Wall -g -O2 conftest.c >&5 configure:4189: $? = 0 configure:4189: result: yes configure:4189: checking for drand48 configure:4189: gcc -o conftest -Wall -g -O2 conftest.c >&5 configure:4189: $? = 0 configure:4189: result: yes configure:4201: checking whether fdatasync is declared configure:4201: gcc -c -Wall -g -O2 conftest.c >&5 configure:4201: $? = 0 configure:4201: result: yes configure:4205: checking for fdatasync configure:4205: gcc -o conftest -Wall -g -O2 conftest.c >&5 configure:4205: $? = 0 configure:4205: result: yes configure:4296: checking for library containing log configure:4327: gcc -o conftest -Wall -g -O2 conftest.c >&5 conftest.c:36: warning: conflicting types for built-in function 'log' /tmp/cc7jqdvv.o: In function `main': /home/psgendb/BIRCHDEV/install/samtools-1.7/htslib-1.7/conftest.c:40: undefined reference to `log' collect2: ld returned 1 exit status configure:4327: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HTSlib" | #define PACKAGE_TARNAME "htslib" | #define PACKAGE_VERSION "1.7" | #define PACKAGE_STRING "HTSlib 1.7" | #define PACKAGE_BUGREPORT "samtools-help@lists.sourceforge.net" | #define PACKAGE_URL "http://www.htslib.org/" | #define HAVE_FSEEKO 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_GMTIME_R 1 | #define HAVE_FSYNC 1 | #define HAVE_DRAND48 1 | #define HAVE_FDATASYNC 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char log (); | int | main () | { | return log (); | ; | return 0; | } configure:4327: gcc -o conftest -Wall -g -O2 conftest.c -lm >&5 conftest.c:36: warning: conflicting types for built-in function 'log' configure:4327: $? = 0 configure:4344: result: -lm configure:4359: checking for zlib.h configure:4359: gcc -c -Wall -g -O2 conftest.c >&5 configure:4359: $? = 0 configure:4359: result: yes configure:4368: checking for inflate in -lz configure:4393: gcc -o conftest -Wall -g -O2 conftest.c -lz -lm >&5 configure:4393: $? = 0 configure:4402: result: yes configure:4428: checking for library containing recv configure:4459: gcc -o conftest -Wall -g -O2 conftest.c -lz -lm >&5 configure:4459: $? = 0 configure:4476: result: none required configure:4493: checking for bzlib.h configure:4493: gcc -c -Wall -g -O2 conftest.c >&5 configure:4493: $? = 0 configure:4493: result: yes configure:4502: checking for BZ2_bzBuffToBuffCompress in -lbz2 configure:4527: gcc -o conftest -Wall -g -O2 conftest.c -lbz2 -lz -lm >&5 configure:4527: $? = 0 configure:4536: result: yes configure:4575: checking for lzma.h configure:4575: gcc -c -Wall -g -O2 conftest.c >&5 configure:4575: $? = 0 configure:4575: result: yes configure:4588: checking for lzma_easy_buffer_encode in -llzma configure:4613: gcc -o conftest -Wall -g -O2 conftest.c -llzma -lbz2 -lz -lm >&5 configure:4613: $? = 0 configure:4622: result: yes configure:4655: checking for curl_easy_pause in -lcurl configure:4680: gcc -o conftest -Wall -g -O2 conftest.c -lcurl -llzma -lbz2 -lz -lm >&5 configure:4680: $? = 0 configure:4689: result: yes configure:4805: checking for CCHmac configure:4805: gcc -o conftest -Wall -g -O2 conftest.c -llzma -lbz2 -lz -lm >&5 /tmp/ccYXRSYn.o: In function `main': /home/psgendb/BIRCHDEV/install/samtools-1.7/htslib-1.7/conftest.c:69: undefined reference to `CCHmac' collect2: ld returned 1 exit status configure:4805: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HTSlib" | #define PACKAGE_TARNAME "htslib" | #define PACKAGE_VERSION "1.7" | #define PACKAGE_STRING "HTSlib 1.7" | #define PACKAGE_BUGREPORT "samtools-help@lists.sourceforge.net" | #define PACKAGE_URL "http://www.htslib.org/" | #define HAVE_FSEEKO 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_GMTIME_R 1 | #define HAVE_FSYNC 1 | #define HAVE_DRAND48 1 | #define HAVE_FDATASYNC 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBBZ2 1 | #define HAVE_LZMA_H 1 | #define HAVE_LIBLZMA 1 | #define HAVE_LIBCURL 1 | #define ENABLE_GCS 1 | /* end confdefs.h. */ | /* Define CCHmac to an innocuous variant, in case declares CCHmac. | For example, HP-UX 11i declares gettimeofday. */ | #define CCHmac innocuous_CCHmac | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char CCHmac (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef CCHmac | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char CCHmac (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_CCHmac || defined __stub___CCHmac | choke me | #endif | | int | main () | { | return CCHmac (); | ; | return 0; | } configure:4805: result: no configure:4812: checking for library containing HMAC configure:4843: gcc -o conftest -Wall -g -O2 conftest.c -llzma -lbz2 -lz -lm >&5 /tmp/ccwGhR5r.o: In function `main': /home/psgendb/BIRCHDEV/install/samtools-1.7/htslib-1.7/conftest.c:46: undefined reference to `HMAC' collect2: ld returned 1 exit status configure:4843: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HTSlib" | #define PACKAGE_TARNAME "htslib" | #define PACKAGE_VERSION "1.7" | #define PACKAGE_STRING "HTSlib 1.7" | #define PACKAGE_BUGREPORT "samtools-help@lists.sourceforge.net" | #define PACKAGE_URL "http://www.htslib.org/" | #define HAVE_FSEEKO 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_GMTIME_R 1 | #define HAVE_FSYNC 1 | #define HAVE_DRAND48 1 | #define HAVE_FDATASYNC 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBBZ2 1 | #define HAVE_LZMA_H 1 | #define HAVE_LIBLZMA 1 | #define HAVE_LIBCURL 1 | #define ENABLE_GCS 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char HMAC (); | int | main () | { | return HMAC (); | ; | return 0; | } configure:4843: gcc -o conftest -Wall -g -O2 conftest.c -lcrypto -llzma -lbz2 -lz -lm >&5 configure:4843: $? = 0 configure:4860: result: -lcrypto configure:4897: checking whether PTHREAD_MUTEX_RECURSIVE is declared configure:4897: gcc -c -Wall -g -O2 conftest.c >&5 configure:4897: $? = 0 configure:4897: result: yes configure:5042: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by HTSlib config.status 1.7, which was generated by GNU Autoconf 2.68. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on venus config.status:843: creating config.mk config.status:843: creating htslib.pc.tmp config.status:843: creating config.h ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_c_compiler_gnu=yes ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_CCHmac=no ac_cv_func_drand48=yes ac_cv_func_fdatasync=yes ac_cv_func_fsync=yes ac_cv_func_getpagesize=yes ac_cv_func_gmtime_r=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_have_decl_PTHREAD_MUTEX_RECURSIVE=yes ac_cv_have_decl_fdatasync_int_=yes ac_cv_header_bzlib_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_lzma_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_header_zlib_h=yes ac_cv_lib_bz2_BZ2_bzBuffToBuffCompress=yes ac_cv_lib_curl_curl_easy_pause=yes ac_cv_lib_lzma_lzma_easy_buffer_encode=yes ac_cv_lib_z_inflate=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_GREP=/bin/grep ac_cv_prog_CPP='gcc -E' ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_search_HMAC=-lcrypto ac_cv_search_log=-lm ac_cv_search_recv='none required' ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no ac_cv_sys_largefile_source=no hts_cv_prog_cc_warnings=-Wall ## ----------------- ## ## Output variables. ## ## ----------------- ## CC='gcc' CFLAGS=' -Wall -g -O2' CPP='gcc -E' CPPFLAGS='' CRYPTO_LIBS='-lcrypto' DEFS='-DHAVE_CONFIG_H' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' EXEEXT='' GREP='/bin/grep' LDFLAGS='' LIBOBJS='' LIBS='-llzma -lbz2 -lz -lm ' LTLIBOBJS='' OBJEXT='o' PACKAGE_BUGREPORT='samtools-help@lists.sourceforge.net' PACKAGE_NAME='HTSlib' PACKAGE_STRING='HTSlib 1.7' PACKAGE_TARNAME='htslib' PACKAGE_URL='http://www.htslib.org/' PACKAGE_VERSION='1.7' PATH_SEPARATOR=':' PLATFORM='default' PLUGIN_EXT='.so' RANLIB='ranlib' SHELL='/bin/sh' ac_ct_CC='gcc' bindir='${exec_prefix}/bin' build_alias='' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' enable_plugins='no' exec_prefix='${prefix}' gcs='enabled' host_alias='unknown-Linux' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' libcurl='enabled' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' oldincludedir='/usr/include' pc_requires=' liblzma' pdfdir='${docdir}' plugindir='$(libexecdir)/htslib' pluginpath='$(libexecdir)/htslib' prefix='/usr/local' private_LIBS=' -lbz2' program_transform_name='s,x,x,' psdir='${docdir}' s3='enabled' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' static_LDFLAGS='' static_LIBS='-lz -lm -lbz2 -llzma -lcurl -lcrypto' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "HTSlib" #define PACKAGE_TARNAME "htslib" #define PACKAGE_VERSION "1.7" #define PACKAGE_STRING "HTSlib 1.7" #define PACKAGE_BUGREPORT "samtools-help@lists.sourceforge.net" #define PACKAGE_URL "http://www.htslib.org/" #define HAVE_FSEEKO 1 #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_STDLIB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define HAVE_GMTIME_R 1 #define HAVE_FSYNC 1 #define HAVE_DRAND48 1 #define HAVE_FDATASYNC 1 #define HAVE_LIBZ 1 #define HAVE_LIBBZ2 1 #define HAVE_LZMA_H 1 #define HAVE_LIBLZMA 1 #define HAVE_LIBCURL 1 #define ENABLE_GCS 1 #define HAVE_HMAC 1 #define ENABLE_S3 1 configure: exit 0