/* plugin.c -- low-level path parsing and plugin functions. Copyright (C) 2015 Genome Research Ltd. Author: John Marshall Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. */ #include #include #include #include #include #include #include #include "hts_internal.h" #include "htslib/kstring.h" #ifndef PLUGINPATH #define PLUGINPATH "" #endif static DIR *open_nextdir(struct hts_path_itr *itr) { DIR *dir; while (1) { const char *colon = strchr(itr->pathdir, ':'); if (colon == NULL) return NULL; itr->entry.l = 0; kputsn(itr->pathdir, colon - itr->pathdir, &itr->entry); itr->pathdir = &colon[1]; if (itr->entry.l == 0) continue; dir = opendir(itr->entry.s); if (dir) break; if (hts_verbose >= 4) fprintf(stderr, "[W::hts_path_itr] can't scan directory \"%s\": %s\n", itr->entry.s, strerror(errno)); } if (itr->entry.s[itr->entry.l-1] != '/') kputc('/', &itr->entry); itr->entry_dir_l = itr->entry.l; return dir; } void hts_path_itr_setup(struct hts_path_itr *itr, const char *path, const char *builtin_path, const char *prefix, size_t prefix_len, const char *suffix, size_t suffix_len) { itr->prefix = prefix; itr->prefix_len = prefix_len; if (suffix) itr->suffix = suffix, itr->suffix_len = suffix_len; else itr->suffix = PLUGIN_EXT, itr->suffix_len = strlen(PLUGIN_EXT); itr->path.l = itr->path.m = 0; itr->path.s = NULL; itr->entry.l = itr->entry.m = 0; itr->entry.s = NULL; if (! builtin_path) builtin_path = PLUGINPATH; if (! path) { path = getenv("HTS_PATH"); if (! path) path = ""; } while (1) { size_t len = strcspn(path, ":"); if (len == 0) kputs(builtin_path, &itr->path); else kputsn(path, len, &itr->path); kputc(':', &itr->path); path += len; if (*path == ':') path++; else break; } // Note that ':' now terminates entries rather than separates them itr->pathdir = itr->path.s; itr->dirv = open_nextdir(itr); } const char *hts_path_itr_next(struct hts_path_itr *itr) { while (itr->dirv) { struct dirent *e; while ((e = readdir((DIR *) itr->dirv)) != NULL) { size_t d_name_len = strlen(e->d_name); if (strncmp(e->d_name, itr->prefix, itr->prefix_len) == 0 && d_name_len >= itr->suffix_len && strncmp(e->d_name + d_name_len - itr->suffix_len, itr->suffix, itr->suffix_len) == 0) { itr->entry.l = itr->entry_dir_l; kputs(e->d_name, &itr->entry); return itr->entry.s; } } closedir((DIR *) itr->dirv); itr->dirv = open_nextdir(itr); } itr->pathdir = NULL; free(itr->path.s); itr->path.s = NULL; free(itr->entry.s); itr->entry.s = NULL; return NULL; } #ifndef RTLD_NOLOAD #define RTLD_NOLOAD 0 #endif void *load_plugin(void **pluginp, const char *filename, const char *symbol) { void *lib = dlopen(filename, RTLD_NOW | RTLD_LOCAL); if (lib == NULL) goto error; void *sym = dlsym(lib, symbol); if (sym == NULL) { // Reopen the plugin with RTLD_GLOBAL and check for uniquified symbol void *libg = dlopen(filename, RTLD_NOLOAD | RTLD_NOW | RTLD_GLOBAL); if (libg == NULL) goto error; dlclose(lib); lib = libg; kstring_t symbolg = { 0, 0, NULL }; kputs(symbol, &symbolg); kputc('_', &symbolg); const char *slash = strrchr(filename, '/'); const char *basename = slash? slash+1 : filename; kputsn(basename, strcspn(basename, ".-+"), &symbolg); sym = dlsym(lib, symbolg.s); free(symbolg.s); if (sym == NULL) goto error; } *pluginp = lib; return sym; error: if (hts_verbose >= 4) fprintf(stderr, "[W::%s] can't load plugin \"%s\": %s\n", __func__, filename, dlerror()); if (lib) dlclose(lib); return NULL; } void *plugin_sym(void *plugin, const char *name, const char **errmsg) { void *sym = dlsym(plugin, name); if (sym == NULL) *errmsg = dlerror(); return sym; } void close_plugin(void *plugin) { if (dlclose(plugin) != 0) { if (hts_verbose >= 4) fprintf(stderr, "[W::%s] dlclose() failed: %s\n", __func__, dlerror()); } }