# Name Description AST1.fa fasta fle with one sequence AST2.fa Another fasta file Rv3829c.fasta a single fasta sequence (from BLAST2 parser ) Rv3829c.blast example BLAST version 2.10.0 output Rv3829c.psiblast example PSI-BLAST version 2.10.0 output TAT_mase_nuc.txt An IG (intelligenetics) sequence file blosum35.blast blosum35.blast.new clustal.aln clustal181.aln clustal_glualign.aln clustalw182.aln clustalw.pir PIR file from clustalw cox2.gb cox2.gcg cox2.msf cox2.nbrf cox2.phylip phylip format cox2b.phylip phylip format crab.nbrf dist.20comp dna.phy phylip format dna.pir globin.fa A multiple sequence alignment fasta file intelligenetics.txt An IG (intelligenetics) sequence file pam250.mat protein.pir