# /Users/gec/Work/StringKernal/Junk/fasta/fasta34 -m 9 -d 0 -Q single.fa testset.fa FASTA searches a protein or DNA sequence data bank version 3.4t24 June 23, 2004 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query library single.fa vs testset.fa library searching testset.fa library 1>>>d1pfsa_ 2.24.6.1.2 Gene V protein [Pseudomonas phage pf3] - 78 aa vs testset.fa library opt E() < 20 0 0: 22 0 0: one = represents 1 library sequences 24 0 0: 26 0 0: 28 0 0: 30 0 0: 32 0 0: 34 0 1:* 36 5 3:==*== 38 0 5: * 40 7 6:=====*= 42 7 8:=======* 44 10 8:=======*== 46 7 9:======= * 48 7 8:=======* 50 7 8:=======* 52 9 7:======*== 54 4 6:==== * 56 4 5:====* 58 5 4:===*= 60 5 3:==*== 62 1 3:= * 64 3 2:=*= 66 1 2:=* 68 2 1:*= 70 2 1:*= 72 2 1:*= 74 1 1:* 76 0 0: 78 3 0:=== 80 0 0: 82 0 0: 84 0 0: 86 0 0: 88 0 0: 90 0 0: 92 0 0: 94 0 0: 96 0 0: 98 0 0: 100 0 0: 102 0 0: 104 0 0: 106 0 0: 108 0 0: 110 0 0: 112 0 0: 114 0 0: 116 0 0: 118 0 0: >120 1 0:= 13355 residues in 93 sequences Expectation_n fit: rho(ln(x))= 5.0980+/-0.0217; mu= 2.2844+/- 0.849 mean_var=62.2146+/-17.240, 0's: 0 Z-trim: 1 B-trim: 0 in 0/19 Lambda= 0.162603 Kolmogorov-Smirnov statistic: 0.0665 (N=20) at 56 FASTA (3.47 Mar 2004) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, gap-pen: -12/-2, width: 16 Scan time: 0.000 The best scores are: opt bits E(93) %_id %_sim sw alen an0 ax0 pn0 px0 an1 ax1 pn1 px1 gapq gapl fs d1pfsa_ 2.24.6.1.2 Gene V protein [Pseudomonas ph ( 78) 534 132.9 5.5e-35 1.000 1.000 534 78 1 78 1 78 1 78 1 78 0 0 0 d4ptp__ 2.29.1.2.1 Trypsin(ogen) [bovine (Bos tau ( 223) 52 20.1 1.4 0.429 0.857 52 14 51 64 1 78 8 21 1 223 0 0 0 d1fus__ 4.1.1.1.2 RNase F1 [Fusarium moniliforme] ( 106) 48 19.0 1.5 0.333 0.515 48 33 40 72 1 78 24 50 1 106 0 6 0 d1jbc__ 2.18.1.1.1 Concanavalin A [jack bean (Can ( 237) 52 20.1 1.5 0.361 0.556 52 36 23 52 1 78 190 225 1 237 6 0 0 d1cyo__ 4.62.1.1.1 Cytochrome b5 [bovine (Bos tau ( 88) 44 18.0 2.4 0.393 0.607 44 28 7 34 1 78 58 84 1 88 0 1 0 d2sga__ 2.29.1.1.2 Protease A [Streptomyces grise ( 181) 46 18.7 3.1 0.381 0.714 46 21 2 22 1 78 36 56 1 181 0 0 0 d1ckaa_ 2.20.2.1.1 C-Crk, N-terminal SH3 domain [ ( 57) 40 17.0 3.2 0.343 0.571 40 35 24 57 1 78 20 53 1 57 1 1 0 d1rgea_ 4.1.1.1.1 RNase Sa [Streptomyces aureofac ( 96) 42 17.6 3.5 0.400 0.560 42 25 33 53 1 78 25 49 1 96 4 0 0 d2olba_ 3.68.1.1.1 Oligo-peptide binding protein ( 517) 50 19.9 3.9 0.367 0.633 50 30 48 77 1 78 312 340 1 517 0 1 0 d1pls__ 2.35.1.1.5 Pleckstrin, N-terminal domain ( 113) 42 17.6 4 0.368 0.737 42 19 15 33 1 78 72 90 1 113 0 0 0 d1burs_ 4.35.1.1.2 Ribulose 1,5-bisphosphate carb ( 123) 41 17.4 5.1 0.357 0.536 41 28 49 73 1 78 20 47 1 123 3 0 0 d1ifc__ 2.39.1.2.2 Intestinal fatty acid binding ( 131) 40 17.2 6.2 0.278 0.667 40 18 9 26 1 78 34 51 1 131 0 0 0 d1lkka_ 4.47.1.1.1 p56-lck tyrosine kinase [human ( 105) 38 16.6 7.1 0.312 0.625 38 32 35 64 1 78 23 54 1 105 2 0 0 d8rxna_ 7.34.3.1.1 Rubredoxin [Desulfovibrio vulg ( 52) 34 15.5 7.6 0.353 0.647 34 17 56 71 1 78 15 31 1 52 1 0 0 d1lcpa2 3.50.1.3.1 (160-484) Leucine aminopeptida ( 325) 43 18.1 8 0.290 0.613 43 31 36 66 1 78 283 312 1 325 0 1 0 d1ra9__ 3.51.1.1.1 Dihydrofolate reductase, proka ( 159) 38 16.7 9.9 0.267 0.550 38 60 19 76 1 78 51 109 1 159 2 1 0 >>>d1pfsa_, 78 aa vs testset.fa library 78 residues in 1 query sequences 13355 residues in 93 library sequences Scomplib [34t24] start: Tue Aug 15 22:58:37 2006 done: Tue Aug 15 22:58:37 2006 Total Scan time: 0.000 Total Display time: 0.010 Function used was FASTA [version 3.4t24 June 23, 2004]