# ssearch34 -m 9 -d 0 -Q single.fa testset.fa SSEARCH searches a sequence data bank version 3.4t24 June 23, 2004 Please cite: T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; W.R. Pearson (1991) Genomics 11:635-650 Query library single.fa vs testset.fa library searching testset.fa library 1>>>d1pfsa_ 2.24.6.1.2 Gene V protein [Pseudomonas phage pf3] - 78 aa vs testset.fa library opt E() < 20 0 0: 22 0 0: one = represents 1 library sequences 24 0 0: 26 0 0: 28 0 0: 30 0 0: 32 2 0:== 34 0 1:* 36 2 3:==* 38 3 5:=== * 40 4 6:==== * 42 2 8:== * 44 9 8:=======*= 46 10 9:========*= 48 8 8:=======* 50 8 8:=======* 52 5 7:===== * 54 8 6:=====*== 56 5 5:====* 58 7 4:===*=== 60 2 3:==* 62 4 3:==*= 64 3 2:=*= 66 2 2:=* 68 1 1:* 70 1 1:* 72 1 1:* 74 1 1:* 76 1 0:= 78 2 0:== 80 1 0:= 82 0 0: 84 0 0: 86 0 0: 88 0 0: 90 0 0: 92 0 0: 94 0 0: 96 0 0: 98 0 0: 100 0 0: 102 0 0: 104 0 0: 106 0 0: 108 0 0: 110 0 0: 112 0 0: 114 0 0: 116 0 0: 118 0 0: >120 1 0:= 13355 residues in 93 sequences Expectation_n fit: rho(ln(x))= 7.2437+/-0.0204; mu= -3.4950+/- 0.925 mean_var=32.6334+/- 9.107, 0's: 0 Z-trim: 1 B-trim: 0 in 0/19 Lambda= 0.224514 Kolmogorov-Smirnov statistic: 0.1096 (N=24) at 42 Smith-Waterman (PGopt) (4.2 Mar 2004) function [BL50 matrix (15:-5)], gap-penalty: -12/-2 Scan time: 0.020 The best scores are: s-w bits E(93) %_id %_sim sw alen an0 ax0 pn0 px0 an1 ax1 pn1 px1 gapq gapl fs d1pfsa_ 2.24.6.1.2 Gene V protein [Pseudomonas ph ( 78) 534 177.3 2.4e-48 1.000 1.000 534 78 1 78 1 78 1 78 1 78 0 0 0 d1fus__ 4.1.1.1.2 RNase F1 [Fusarium moniliforme] ( 106) 48 19.6 0.97 0.333 0.515 48 33 40 72 1 78 24 50 1 106 0 6 0 d4ptp__ 2.29.1.2.1 Trypsin(ogen) [bovine (Bos tau ( 223) 52 20.2 1.3 0.429 0.857 52 14 51 64 1 78 8 21 1 223 0 0 0 d1jbc__ 2.18.1.1.1 Concanavalin A [jack bean (Can ( 237) 52 20.2 1.5 0.361 0.556 52 36 23 52 1 78 190 225 1 237 6 0 0 d1cyo__ 4.62.1.1.1 Cytochrome b5 [bovine (Bos tau ( 88) 44 18.5 1.8 0.393 0.607 44 28 7 34 1 78 58 84 1 88 0 1 0 d1ckaa_ 2.20.2.1.1 C-Crk, N-terminal SH3 domain [ ( 57) 40 17.6 2.1 0.343 0.571 40 35 24 57 1 78 20 53 1 57 1 1 0 d1rgea_ 4.1.1.1.1 RNase Sa [Streptomyces aureofac ( 96) 42 17.7 3.1 0.400 0.560 42 25 33 53 1 78 25 49 1 96 4 0 0 d2sga__ 2.29.1.1.2 Protease A [Streptomyces grise ( 181) 46 18.5 3.6 0.381 0.714 46 21 2 22 1 78 36 56 1 181 0 0 0 d1pls__ 2.35.1.1.5 Pleckstrin, N-terminal domain ( 113) 42 17.6 4.1 0.368 0.737 42 19 15 33 1 78 72 90 1 113 0 0 0 d1burs_ 4.35.1.1.2 Ribulose 1,5-bisphosphate carb ( 123) 41 17.2 5.8 0.357 0.536 41 28 49 73 1 78 20 47 1 123 3 0 0 d8rxna_ 7.34.3.1.1 Rubredoxin [Desulfovibrio vulg ( 52) 34 15.7 6.9 0.353 0.647 34 17 56 71 1 78 15 31 1 52 1 0 0 d2olba_ 3.68.1.1.1 Oligo-peptide binding protein ( 517) 50 18.8 7.9 0.367 0.633 50 30 48 77 1 78 312 340 1 517 0 1 0 d1xsoa_ 2.1.7.1.3 Cu,Zn superoxide dismutase, SOD ( 150) 41 17.0 7.9 0.308 0.538 41 39 31 66 1 78 36 72 1 150 3 2 0 d1ifc__ 2.39.1.2.2 Intestinal fatty acid binding ( 131) 40 16.8 8 0.278 0.667 40 18 9 26 1 78 34 51 1 131 0 0 0 d1lkka_ 4.47.1.1.1 p56-lck tyrosine kinase [human ( 105) 38 16.4 8.7 0.312 0.625 38 32 35 64 1 78 23 54 1 105 2 0 0 d3sdhb_ 1.1.1.1.1 Hemoglobin I [ark clam (Scaphar ( 145) 40 16.7 9.3 0.270 0.541 40 37 10 40 1 78 55 91 1 145 6 0 0 >>>d1pfsa_, 78 aa vs testset.fa library 78 residues in 1 query sequences 13355 residues in 93 library sequences Scomplib [34t24] start: Tue Aug 15 22:53:20 2006 done: Tue Aug 15 22:53:20 2006 Total Scan time: 0.020 Total Display time: 0.010 Function used was SSEARCH [version 3.4t24 June 23, 2004]