Pollux 1.0.2
Source compiled on Jan 25 2018 at 17:47:52.


USAGE: 

ERROR CORRECTION
Required: 

	-i 	[file] 	Specify one or many FASTQ input files.
                files cannot be gzipped!



Optional: 

	-o 	 	Output directory.
	-p 	 	Specify input should be treated as paired.

	-s 	[bool] 	Substitution corrections. "true (default)" or "false".
	-n 	[bool] 	Insertion corrections. "true (default)" or "false".
	-d 	[bool] 	Deletion corrections. "true (default)" or "false".
	-h 	[bool] 	Homopolymer corrections. "true (default)" or "false".
	-f 	[bool] 	Low k-mer read filtering. "true (default)" or "false".

	-k 	[int] 	Specify the k-mer size.
	-b 	[int] 	Specify the input batch size.

FASTK CONVERSION
Required: 
	-fastk 		FASTQ to FASTK file conversion.
	-i 	[file] 	Specify one or many input files.

EXAMPLES: 

./error -i file1.fastq
	Correct a single file.

./error -i file1.fastq file2.fastq file3.fastq
	Correct multiple file together.

./error -i frag_1.fastq frag_2.fastq -p
	Correct two paired files.

./error -fastk -i file1.fastq
	Convert file1.fastq to FASTK format.