#!/bin/sh

# It seems stupid, but in Fedora 16, if you don't explicitly
# make $HOME your current working directory, birch starts in root (/)
# and for whatever reason, bioLegato jobs launched from birch won't 
# be able to find important files.
cd

# Get BioLegato environment variables.
if [ -f $BIRCH/admin/setblenv.profile.$BIRCH_PLATFORM.source ]
   then
      . $BIRCH/admin/setblenv.profile.$BIRCH_PLATFORM.source
fi

BIOLEGATO_HOME=$BIRCH/java/bioLegato
export BIOLEGATO_HOME


# The location of anciliary data files used by bioLegato.
BL_DATA_DIR=$BIRCH/dat/blprefs
export BL_DATA_DIR


BL_PROPERTIES=$BL_DATA_DIR/blprefs.properties
export BL_PROPERTIES


java -Xms6M -Xmx32M -jar $BIOLEGATO_HOME/pcdcanvas.jar $*


# ------------------------ LOGGING ------------------------------
# For future use when we have a secure logging method.

#if [ "$BIRCH_LOGGING" -eq "1" ] 
#    then
#    echo `whoami` `date` >> $BIRCH/local/admin/biolegato.log
#fi