# A superclass for reading [f]ixed-column type [f]lat-[f]ile records. (e.g. class fff_rec: def __init__(self,inrec=''): self.data = inrec def __repr__(self): return str(self.data) __str__ = __repr__ def __len__(self): return len(self.data) def __getitem__(self,index): if isinstance(index, slice): return self.data[index] elif (isinstance(index, tuple) or isinstance(index, list)) \ and len(index) == 2: #Not sure if this is needed anymore: return self.data[index[0]:index[1]] else: return self.data[index] # Definition of the align section in a FSSP file class align: abs_res_num = (0,4) pdb_res_num = (4,9) chain_id = 10 res_name = 12 ss1 = 15 turn3 = 17 turn4 = 18 turn5 = (20,22) acc = (34,37) start_aa_list = 42